Citrus Sinensis ID: 019871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLDKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHcccEEEEEEccccEEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHcccccEEHHHHcccHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHcccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEccccccEEEEEEcccccHHHcccEEcccEEEEEEcccccccccHHHccHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHcccccHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mslapssyaslysppplprtnqnpflfsqnshvwfkkncflsasgcscntllvkpSVFVAKAseteaqaspeaesgseeqeEKYEEYEVEIeqpyglkfakgrdggtyidaiapggsadktgmfqvGDKVLATSAVfgteiwpaaeygrtMYTIRQRVGPLLMKMQKRYgkmeqtgelSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFEsvlgskptpeessvasYNVACCYSKLNQVKAGLSALEDALLAGYedfkrvrtdpdlenlraSEEFDVLLKRFDESFINENAINAIKSLFGLLDKK
Flexible Loop (DISEMBL)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASeteaqaspeaesgseeqeEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGteiwpaaeygrtmYTIRQRVGPLLMKMQKRYGKmeqtgelsekeiiraernsgvisnrvreiqmqnymkkkeqkerreqdlreglqlyrtgkyevAREKFesvlgskptpeesSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFkrvrtdpdlenlraSEEFDVLLKRFDESFINENAINAIKSLFGLLDKK
Low Complexity Region (SEG)
MslapssyaslysppplpRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETeaqaspeaesgseeqeekyeeyeveieqpyGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMkkkeqkerreqDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLDKK
Disordered region (IsUnstruct)
************************FLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVA****************************VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKM***********************************************************LYRTGKY**********************ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLL***
Disordered Region (DISOPRED)
************************************************************************************EEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLD**
Disordered Region (DISEMBL)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKAS*************************VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYM***********DLREGLQLYRTGKYEVAREKFE***************SYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLDKK
Disordered Region (DISPRO)
************SPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASE*****************EKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLDK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQxxxxxxxxxxxxxxxxxxxxxLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLDKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
F4J117	591	Phosphoglucan phosphatase	no	no	0.251	0.142	0.273	0.0002

>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%)

Query: 86  EYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145
           EY V +E+P G++FA   DG  ++ AI  G +A+K  +  VGD +   S   G  +    
Sbjct: 76  EYMVTLEKPLGIRFALSADGKIFVHAIKKGSNAEKARIIMVGDTLKKASDSSGGTLVEIK 135

Query: 146 EYGRTMYTIRQRVGPLLMKMQKRY 169
           ++G T   + ++ G   + +++ +
Sbjct: 136 DFGDTKKMLVEKTGSFSLVLERPF 159

Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation. Participates to the regulation of the initial steps of starch degradation at the granule surface. May release a different set of phosphate groups from those removed by DSP4.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
225435790	329	PREDICTED: uncharacterized protein LOC10	0.955	0.969	0.769	1e-135
224073126	344	predicted protein [Populus trichocarpa]	0.988	0.959	0.727	1e-134
255564826	337	protein binding protein, putative [Ricin	0.982	0.973	0.75	1e-133
357519275	335	hypothetical protein MTR_8g088420 [Medic	0.970	0.967	0.692	1e-127
297847910	335	binding protein [Arabidopsis lyrata subs	0.931	0.928	0.730	1e-125
449463844	337	PREDICTED: uncharacterized protein LOC10	0.976	0.967	0.680	1e-124
357519277	332	hypothetical protein MTR_8g088420 [Medic	0.961	0.966	0.686	1e-124
147789082	1051	hypothetical protein VITISV_041015 [Viti	0.847	0.269	0.797	1e-124
255645435	342	unknown [Glycine max]	0.988	0.964	0.690	1e-121
18405391	335	ZKT protein containing PDZ, K-box and a	0.928	0.925	0.734	1e-121

>gi|225435790|ref|XP_002285744.1| PREDICTED: uncharacterized protein LOC100241562 [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/342 (76%), Positives = 281/342 (82%), Gaps = 23/342 (6%)

Query: 1   MSLAPSSYASLYSPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCS---------CNTL 51
           MSLAPSSYASLYS PPLPRT        Q+S       C L  S  S         CNT 
Sbjct: 1   MSLAPSSYASLYSSPPLPRT----VPMRQSSF------CKLPCSNHSSIPTGLISFCNTH 50

Query: 52  LVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDA 111
           LVKPS+ V +ASETE    P   S SE +EEKYEEYEVE+ QPYGLKFAKGRDGGTYIDA
Sbjct: 51  LVKPSILVVRASETE----PSQTSKSESEEEKYEEYEVELVQPYGLKFAKGRDGGTYIDA 106

Query: 112 IAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK 171
           IAPGGSADKT MF VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKRYGK
Sbjct: 107 IAPGGSADKTEMFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGK 166

Query: 172 MEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKY 231
           ++ TGEL+EKEIIRAERNSGVISNRVREIQMQNY KK EQKERR +DLREGLQLYR+ KY
Sbjct: 167 VDNTGELTEKEIIRAERNSGVISNRVREIQMQNYQKKMEQKERRAKDLREGLQLYRSAKY 226

Query: 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRT 291
           E A +KFESVLGSKP P E+S ASYNVACCYSKLNQ++AGLSALEDAL AGYEDFK +RT
Sbjct: 227 EEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALEDALEAGYEDFKTIRT 286

Query: 292 DPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLDK 333
           DPDL N+R SEEF+ LLKRFDESFINENAINAIKSLFGLL K
Sbjct: 287 DPDLANIRKSEEFEPLLKRFDESFINENAINAIKSLFGLLKK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073126|ref|XP_002303984.1| predicted protein [Populus trichocarpa] gi|222841416|gb|EEE78963.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/341 (72%), Positives = 278/341 (81%), Gaps = 11/341 (3%)

Query: 1   MSLAPSSYASLYSPPPLPRTN----QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPS 56
           MSLAPS Y +LYS  PLP ++    Q P LFSQN+H   K   FLS S    NTLL+KPS
Sbjct: 1   MSLAPSRYPALYSSSPLPTSSVQAKQIPLLFSQNTHFLSKNYSFLSTSTAFSNTLLLKPS 60

Query: 57  VFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE-------QPYGLKFAKGRDGGTYI 109
             + KASETE+Q S  AESGS  + E   E E + E       QPYG+KFAKGRDG TYI
Sbjct: 61  NSILKASETESQTSKSAESGSGGEGEGEGEGEEKYEEYEVEIEQPYGIKFAKGRDGSTYI 120

Query: 110 DAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRY 169
           DAIAPGGSADK G F VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPL MKMQKRY
Sbjct: 121 DAIAPGGSADKNGKFSVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLFMKMQKRY 180

Query: 170 GKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTG 229
           G M+ TGEL+EKEIIRAERNSGVISNRVREIQMQNY++KKEQKE+RE+DLREGLQLY+  
Sbjct: 181 GNMDYTGELTEKEIIRAERNSGVISNRVREIQMQNYLRKKEQKEQREKDLREGLQLYKNA 240

Query: 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV 289
           KYE A EKFES+LGSKP P E++VASYNVACCYSKLNQ++AGLSALEDA+ AG+EDFKR+
Sbjct: 241 KYEEALEKFESMLGSKPDPTEAAVASYNVACCYSKLNQLQAGLSALEDAMKAGFEDFKRI 300

Query: 290 RTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGL 330
           RTDPDL NLR +E F+ L+KRFDESFINENAINAIKSLFG 
Sbjct: 301 RTDPDLSNLRTAEGFEPLMKRFDESFINENAINAIKSLFGF 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564826|ref|XP_002523407.1| protein binding protein, putative [Ricinus communis] gi|223537357|gb|EEF38986.1| protein binding protein, putative [Ricinus communis]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/336 (75%), Positives = 289/336 (86%), Gaps = 8/336 (2%)

Query: 1   MSLAPSSYASLYSPPPLPRT---NQNPFLFSQNSHVWFKKNCFLSASGCSCNTL-LVKPS 56
           MSLAPSSYASLY+ PPLPRT    QNP +FSQN + +F KNC    +  S ++  L+KPS
Sbjct: 1   MSLAPSSYASLYTSPPLPRTITIKQNPLIFSQN-NPFFSKNCSFFTTSTSFSSTHLLKPS 59

Query: 57  VFVAKASETEAQASPEAESGS--EEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAP 114
               KASETE++AS ++ESGS   E EE+YEEYEVE+ QPYG+KFAKGRDG TYIDAIAP
Sbjct: 60  NLTVKASETESKAS-KSESGSTEGEGEEQYEEYEVELLQPYGIKFAKGRDGATYIDAIAP 118

Query: 115 GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQ 174
           GG+ADKTGMF VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMK+QKRYGK + 
Sbjct: 119 GGAADKTGMFTVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKLQKRYGKTDY 178

Query: 175 TGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVA 234
            GE++EKEIIRAERNSG IS+RVREIQMQNY++KKEQK +RE+DLR+GL LY+  KYE A
Sbjct: 179 AGEMTEKEIIRAERNSGFISDRVREIQMQNYLRKKEQKAQREKDLRDGLILYKNAKYEEA 238

Query: 235 REKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPD 294
            E+FESVLGSKP P E+SVASYNVACCYSKLNQ+KAGLSAL+DA+ AG+EDFKR+RTDPD
Sbjct: 239 LERFESVLGSKPDPNEASVASYNVACCYSKLNQLKAGLSALKDAMEAGFEDFKRIRTDPD 298

Query: 295 LENLRASEEFDVLLKRFDESFINENAINAIKSLFGL 330
           L NLR SEEF+ LLKRFDESFINENAINAIKSLFG 
Sbjct: 299 LANLRTSEEFEPLLKRFDESFINENAINAIKSLFGF 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519275|ref|XP_003629926.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|217073920|gb|ACJ85320.1| unknown [Medicago truncatula] gi|355523948|gb|AET04402.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|388505444|gb|AFK40788.1| unknown [Medicago truncatula]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/338 (69%), Positives = 271/338 (80%), Gaps = 14/338 (4%)

Query: 1   MSLAPSS-----YASLYSPPPLPRTN--QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLV 53
           MSL+ S+     Y +L  P    + N  QNP  F  N+ ++  KN   S      NTLL 
Sbjct: 1   MSLSMSTTTSGHYTALSLPTRTTQINSKQNPTYFFPNTKLFSSKNHSFS------NTLLS 54

Query: 54  KPSVFVAKAS-ETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAI 112
           KP ++V KAS E  + AS E     E ++E YEEYEVEI+QPYG+KF KGRDGGTYIDAI
Sbjct: 55  KPFLYVVKASSEVGSDASKEDSEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAI 114

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172
           APGGSADK G+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLM+MQKRYGK+
Sbjct: 115 APGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRYGKI 174

Query: 173 EQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYE 232
           E  G+L+EKEIIRAERNSGV+SN++REIQMQNY++KKE KE RE+DLREGL LYR  KYE
Sbjct: 175 ETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRERDLREGLLLYRNAKYE 234

Query: 233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTD 292
            A EKFESVLGSKP P+E++VASYNVACCYSKLNQ++A LS LE+AL +G+EDFKR+RTD
Sbjct: 235 EALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLEEALNSGFEDFKRIRTD 294

Query: 293 PDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGL 330
           PDL NLRAS EFD LLKRFDESFINE+AINAIKS+FG 
Sbjct: 295 PDLANLRASPEFDPLLKRFDESFINESAINAIKSIFGF 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847910|ref|XP_002891836.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297337678|gb|EFH68095.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/312 (73%), Positives = 260/312 (83%), Gaps = 1/312 (0%)

Query: 19  RTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSE 78
           +T QNP L +Q+S +  K     S S   CNT + K     +KASETE+ A  E      
Sbjct: 22  QTKQNPSLITQSSFISAKSLFLSSNSNSLCNTHVAKRRNLASKASETESTAKTEGGG-EG 80

Query: 79  EQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFG 138
           E EEKYE YEVE+EQPYGLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVFG
Sbjct: 81  EAEEKYETYEVEVEQPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVFG 140

Query: 139 TEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVR 198
           TEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E  GEL+EKEIIRAERN+G IS+R+R
Sbjct: 141 TEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDAGELTEKEIIRAERNAGYISSRLR 200

Query: 199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNV 258
           EIQMQNY++KKEQK +RE+DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYNV
Sbjct: 201 EIQMQNYLRKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYNV 260

Query: 259 ACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINE 318
           ACCYSKLNQV+AGLSALE+AL +GYEDFKR+RTDPDLENLR S++FD LLK+FDESFINE
Sbjct: 261 ACCYSKLNQVQAGLSALEEALKSGYEDFKRIRTDPDLENLRKSKDFDPLLKQFDESFINE 320

Query: 319 NAINAIKSLFGL 330
           +AINAIKSLFG 
Sbjct: 321 SAINAIKSLFGF 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463844|ref|XP_004149641.1| PREDICTED: uncharacterized protein LOC101217229 [Cucumis sativus] gi|449522778|ref|XP_004168403.1| PREDICTED: uncharacterized LOC101217229 [Cucumis sativus]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/335 (68%), Positives = 267/335 (79%), Gaps = 9/335 (2%)

Query: 1   MSLAPSSYASLY-----SPPPLPRTNQNPFLFSQNSHVWFKKNCFLSASGCSCNTLLVKP 55
           MSLAP    S +      PP    ++ + F+    SH    K   L  S     +  +K 
Sbjct: 5   MSLAPPYLYSSHLLPKICPPNHSSSSSSSFILCSQSHSH-PKLSHLPFSTSFSTSHSLKH 63

Query: 56  SVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPG 115
           S F+ +AS+TE++   +++   +  ++ YEEYEVE+EQPYGLKFAKGRDGGTYIDAIAPG
Sbjct: 64  SPFILRASDTESKTDTDSD---DPNQQPYEEYEVELEQPYGLKFAKGRDGGTYIDAIAPG 120

Query: 116 GSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQT 175
           G ADKTG+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKRYGK +  
Sbjct: 121 GFADKTGLFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGKTDSF 180

Query: 176 GELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAR 235
           GEL+EKEIIRAERNSGV+SN+VREIQ+QN ++ KEQK RRE DLR+GL+LY+  KYE A 
Sbjct: 181 GELTEKEIIRAERNSGVVSNKVREIQLQNALRMKEQKARRENDLRQGLRLYKNAKYEEAL 240

Query: 236 EKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL 295
           EKFESVLGSKPTP+E+SVASYNVACCYS+LNQ+KAGLSALEDAL AG+EDFKRVRTDPDL
Sbjct: 241 EKFESVLGSKPTPDEASVASYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDL 300

Query: 296 ENLRASEEFDVLLKRFDESFINENAINAIKSLFGL 330
            N+R  EEF+ L+KRFDESFINENAINAIKSLFG 
Sbjct: 301 SNIRTLEEFEPLVKRFDESFINENAINAIKSLFGF 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519277|ref|XP_003629927.1| hypothetical protein MTR_8g088420 [Medicago truncatula] gi|355523949|gb|AET04403.1| hypothetical protein MTR_8g088420 [Medicago truncatula]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/338 (68%), Positives = 268/338 (79%), Gaps = 17/338 (5%)

Query: 1   MSLAPSS-----YASLYSPPPLPRTN--QNPFLFSQNSHVWFKKNCFLSASGCSCNTLLV 53
           MSL+ S+     Y +L  P    + N  QNP  F  N+ ++  KN   S      NTLL 
Sbjct: 1   MSLSMSTTTSGHYTALSLPTRTTQINSKQNPTYFFPNTKLFSSKNHSFS------NTLLS 54

Query: 54  KPSVFVAKAS-ETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAI 112
           KP ++V KAS E  + AS E     E ++E YEEYEVEI+QPYG+KF KGRDGGTYIDAI
Sbjct: 55  KPFLYVVKASSEVGSDASKEDSEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAI 114

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKM 172
           APGGSADK G+F VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLM+MQKRY   
Sbjct: 115 APGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRY--- 171

Query: 173 EQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYE 232
           E  G+L+EKEIIRAERNSGV+SN++REIQMQNY++KKE KE RE+DLREGL LYR  KYE
Sbjct: 172 ETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRERDLREGLLLYRNAKYE 231

Query: 233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTD 292
            A EKFESVLGSKP P+E++VASYNVACCYSKLNQ++A LS LE+AL +G+EDFKR+RTD
Sbjct: 232 EALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQIQAALSTLEEALNSGFEDFKRIRTD 291

Query: 293 PDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGL 330
           PDL NLRAS EFD LLKRFDESFINE+AINAIKS+FG 
Sbjct: 292 PDLANLRASPEFDPLLKRFDESFINESAINAIKSIFGF 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789082|emb|CAN75787.1| hypothetical protein VITISV_041015 [Vitis vinifera]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/297 (79%), Positives = 255/297 (85%), Gaps = 14/297 (4%)

Query: 48   CNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGT 107
            CNT LVKPS+ V +ASETE    P   S SE +EEKYEEYEVE+ QPYGLKFAKGRDGGT
Sbjct: 759  CNTHLVKPSILVVRASETE----PSQTSKSESEEEKYEEYEVELVQPYGLKFAKGRDGGT 814

Query: 108  YIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167
            YIDAIAPGGSADKT MF VGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQK
Sbjct: 815  YIDAIAPGGSADKTEMFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQK 874

Query: 168  RYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLY- 226
            RYGK++ TGEL+EKEIIRAERNSGVISNRVREIQMQNY KK EQKERR +DLREGLQL  
Sbjct: 875  RYGKVDNTGELTEKEIIRAERNSGVISNRVREIQMQNYQKKMEQKERRAKDLREGLQLLQ 934

Query: 227  ---------RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277
                     R+ KYE A +KFESVLGSKP P E+S ASYNVACCYSKLNQ++AGLSALED
Sbjct: 935  YCFFFDYNKRSAKYEEALDKFESVLGSKPDPNEASAASYNVACCYSKLNQIQAGLSALED 994

Query: 278  ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLLDKK 334
            AL AGYEDFK +RTDPDL N+R SEEF+ LLKRFDESFINENAINAIKSLFGLL K+
Sbjct: 995  ALEAGYEDFKTIRTDPDLANIRKSEEFEPLLKRFDESFINENAINAIKSLFGLLKKE 1051

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645435|gb|ACU23213.1| unknown [Glycine max]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/339 (69%), Positives = 269/339 (79%), Gaps = 9/339 (2%)

Query: 1   MSL--APSSYASLYSPPPLPRTNQ-NPFLFSQNSHVWFKKN-CFLSASGCSCNTLLVKPS 56
           MSL    S ++S+YS   LPRT Q +P LFS  +  +  K+  +   S C  NTLL +P 
Sbjct: 1   MSLPTTTSGHSSIYSALTLPRTTQIHPTLFSPTTKFFSSKSPSYSGLSNCFSNTLLSRPL 60

Query: 57  VFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAI 112
           +F  KAS      + + ES   E+EE+ EE   E E    QP+GLKFAKGRDGGTYIDAI
Sbjct: 61  LFAVKASSGVGSEASKQESDKSEEEEEEEEPYEEYEVEIEQPFGLKFAKGRDGGTYIDAI 120

Query: 113 APGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK- 171
           APGGSADK G+F VGDKV+ATSAVFGTEIWPAAEYGRTMYTIRQR+GPLLMKMQKRYGK 
Sbjct: 121 APGGSADKAGVFTVGDKVIATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGKN 180

Query: 172 MEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKY 231
           ++  GEL+EKEIIRAERNSG ISNRVREIQM N ++K+EQKERRE+DLREGLQLY+ GKY
Sbjct: 181 IDSGGELTEKEIIRAERNSGFISNRVREIQMLNALRKREQKERREKDLREGLQLYKNGKY 240

Query: 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRT 291
           + A EKFES+LGSKP PEE++VASYNVACCY KLNQ +A LS+LE+AL  G+EDFKR+RT
Sbjct: 241 DEALEKFESILGSKPEPEEAAVASYNVACCYFKLNQTQAALSSLEEALNTGFEDFKRIRT 300

Query: 292 DPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGL 330
           DPDL N RASEEFD LLKRFDESFINENAINAIKSLFG 
Sbjct: 301 DPDLANARASEEFDPLLKRFDESFINENAINAIKSLFGF 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405391|ref|NP_564691.1| ZKT protein containing PDZ, K-box and a TPR region [Arabidopsis thaliana] gi|14532604|gb|AAK64030.1| unknown protein [Arabidopsis thaliana] gi|19310719|gb|AAL85090.1| unknown protein [Arabidopsis thaliana] gi|65329373|gb|AAY42135.1| GAN [Arabidopsis thaliana] gi|66766206|dbj|BAD99102.1| hypothetical protein [Arabidopsis thaliana] gi|332195129|gb|AEE33250.1| ZKT protein containing PDZ, K-box and a TPR region [Arabidopsis thaliana]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/313 (73%), Positives = 266/313 (84%), Gaps = 3/313 (0%)

Query: 19  RTNQNPFLFSQNSHVWFKKNCFLSASGCS-CNTLLVKPSVFVAKASETEAQASPEAESGS 77
           +T QNP L +Q+S +   K+ FLS++  S CNT + K      KASETE+ A  EA    
Sbjct: 22  QTKQNPSLITQSSFIS-AKSLFLSSNSASLCNTHVAKRRNLALKASETESSAKAEAGG-D 79

Query: 78  EEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
            E+EEKYE YE+E+EQPYGLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVF
Sbjct: 80  GEEEEKYETYEIEVEQPYGLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVF 139

Query: 138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197
           GTEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E TGEL+EKEIIRAERN+G IS+R+
Sbjct: 140 GTEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDTGELTEKEIIRAERNAGYISSRL 199

Query: 198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257
           REIQMQNY+KKKEQK +RE+DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYN
Sbjct: 200 REIQMQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYN 259

Query: 258 VACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFIN 317
           VACCYSKLNQV+AGLSALE+AL +GYEDFKR+R+DPDLE LR S++FD LLK+FDESFIN
Sbjct: 260 VACCYSKLNQVQAGLSALEEALKSGYEDFKRIRSDPDLETLRKSKDFDPLLKQFDESFIN 319

Query: 318 ENAINAIKSLFGL 330
           E+AINAIKSLFG 
Sbjct: 320 ESAINAIKSLFGF 332

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2193844	335	ZKT "protein containing PDZ do	0.937	0.934	0.652	4.9e-101
TAIR|locus:2024720	453	LPA1 "LOW PSII ACCUMULATION1"	0.257	0.189	0.372	1.6e-06
TAIR|locus:2167150	271	ENH1 "enhancer of sos3-1" [Ara	0.182	0.225	0.387	0.00034

TAIR|locus:2193844 ZKT "protein containing PDZ domain, a K-box domain, and a TPR region" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 207/317 (65%), Positives = 238/317 (75%)

Query:    19 RTNQNPFLFSQNSHVWFKKNCFLSASGCS-CNTLLVKPSVFVAKASETXXXXXXXXXXXX 77
             +T QNP L +Q+S +   K+ FLS++  S CNT + K      KASET            
Sbjct:    22 QTKQNPSLITQSSFI-SAKSLFLSSNSASLCNTHVAKRRNLALKASETESSAKAEAGGDG 80

Query:    78 XXXXXXXXXXXXXXXXXXGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
                               GLKF KGRDGGTYIDAI PGGSADKTG F VGD+V+ATSAVF
Sbjct:    81 EEEEKYETYEIEVEQPY-GLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAVF 139

Query:   138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV 197
             GTEIWPAAEYGRTMYTIRQR+GPLLM+M+KR GK E TGEL+EKEIIRAERN+G IS+R+
Sbjct:   140 GTEIWPAAEYGRTMYTIRQRIGPLLMQMEKRNGKAEDTGELTEKEIIRAERNAGYISSRL 199

Query:   198 REIQMQNYMXXXXXXXXXXXDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYN 257
             REIQMQNY+           DLREGLQ  + GKYE A E+FESVLGSKPTPEE+SVASYN
Sbjct:   200 REIQMQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKPTPEEASVASYN 259

Query:   258 VACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFIN 317
             VACCYSKLNQV+AGLSALE+AL +GYEDFKR+R+DPDLE LR S++FD LLK+FDESFIN
Sbjct:   260 VACCYSKLNQVQAGLSALEEALKSGYEDFKRIRSDPDLETLRKSKDFDPLLKQFDESFIN 319

Query:   318 ENAINAIKSLFGLLDKK 334
             E+AINAIKSLFG  +KK
Sbjct:   320 ESAINAIKSLFGF-NKK 335

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2024720 LPA1 "LOW PSII ACCUMULATION1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 32/86 (37%), Positives = 44/86 (51%)

Query:   222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281
             GL L++ G+ + A  +FE+ L   P P ES  A YN ACC++   + K  +  L  AL  
Sbjct:    82 GLDLFKRGRVKDALVQFETALSLAPNPIESQAAYYNKACCHAYRGEGKKAVDCLRIALRD 141

Query:   282 GYEDFKRVRTDPDLENLRASEEFDVL 307
                 F  +  DPDL + RA  EF  L
Sbjct:   142 YNLKFATILNDPDLASFRALPEFKEL 167

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010270 "photosystem II oxygen evolving complex assembly" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA

TAIR|locus:2167150 ENH1 "enhancer of sos3-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00033
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query:    96 GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155
             GL   + + GG  I  +  GG+A K G+ + GD+V+ TS+ FG E+WPA + G T   I+
Sbjct:    95 GLTLGQKQGGGVVITGVDGGGNAAKAGL-KSGDQVVYTSSFFGDELWPADKLGFTKTAIQ 153

Query:   156 QR 157
              +
Sbjct:   154 AK 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      334       276   0.00079  115 3  11 22  0.37    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.28u 0.11s 20.39t   Elapsed:  00:00:01
  Total cpu time:  20.28u 0.11s 20.39t   Elapsed:  00:00:01
  Start:  Fri May 10 11:29:31 2013   End:  Fri May 10 11:29:32 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0046872 "metal ion binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
PLN03098	453	PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisiona	1e-09
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-04
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	6e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	0.001

>gnl|CDD|215573 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisional

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 32/86 (37%), Positives = 43/86 (50%)

Query: 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281
           GL L+  G+ + A  +FE+ L   P P+E+  A YN ACC++   + K     L  AL  
Sbjct: 82  GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141

Query: 282 GYEDFKRVRTDPDLENLRASEEFDVL 307
               F  +  DPDL   RAS EF  L
Sbjct: 142 YNLKFSTILNDPDLAPFRASPEFKEL 167

Length = 453

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 86  EYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              V +        G     G+D  GG ++  + PGG A++ G+ +VGD++L 
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGL-RVGDRILE 52

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E   VE+E      G     G+D  GG  + ++ PG  A K G+ +VGD +L 
Sbjct: 1   EPRLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGL-RVGDVILE 52

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278
           L       R G Y+ A    E+ L   P    ++ A   +     +  ++    + L  A
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYP---LAAEALLLLGEALLRQGRLAEAAALLRAA 57

Query: 279 L 279
           L
Sbjct: 58  L 58

Length = 65

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 94  PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             G     G +GG  + ++ PG  A++ G  Q GD +LA
Sbjct: 2   GLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILA 39

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.61
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.57
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.27
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.26
PRK15359	144	type III secretion system chaperone protein SscB;	99.22
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.21
KOG0553	304	consensus TPR repeat-containing protein [General f	99.19
KOG0553	304	consensus TPR repeat-containing protein [General f	99.15
PRK15359	144	type III secretion system chaperone protein SscB;	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.13
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.08
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.0
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.91
PRK12370	553	invasion protein regulator; Provisional	98.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.9
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.89
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.85
PRK11189	296	lipoprotein NlpI; Provisional	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.83
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.79
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.78
KOG1126	638	consensus DNA-binding cell division cycle control	98.78
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.77
PLN02789	320	farnesyltranstransferase	98.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.73
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.71
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.7
PRK12370	553	invasion protein regulator; Provisional	98.69
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.69
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.69
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.68
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.66
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.65
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.65
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.63
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.63
KOG4234	271	consensus TPR repeat-containing protein [General f	98.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.6
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.6
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.57
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.56
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.55
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.54
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.52
KOG1125	579	consensus TPR repeat-containing protein [General f	98.52
PLN02789	320	farnesyltranstransferase	98.51
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.49
KOG1126	638	consensus DNA-binding cell division cycle control	98.48
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.46
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.46
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.46
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.45
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.41
KOG4234	271	consensus TPR repeat-containing protein [General f	98.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.39
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.38
PRK10803	263	tol-pal system protein YbgF; Provisional	98.38
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.36
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.35
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.3
KOG1125	579	consensus TPR repeat-containing protein [General f	98.29
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.27
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.24
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.2
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.19
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.19
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.14
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.13
PRK10803	263	tol-pal system protein YbgF; Provisional	98.12
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.08
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.07
PF13512	142	TPR_18: Tetratricopeptide repeat	98.06
PF13431	34	TPR_17: Tetratricopeptide repeat	98.03
KOG4555	175	consensus TPR repeat-containing protein [Function	98.03
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.01
PF12688	120	TPR_5: Tetratrico peptide repeat	98.0
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.95
KOG1129	478	consensus TPR repeat-containing protein [General f	97.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.93
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.91
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.91
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.89
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.88
PF13512	142	TPR_18: Tetratricopeptide repeat	97.87
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.83
PRK11906	458	transcriptional regulator; Provisional	97.83
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.83
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.8
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	97.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.78
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.77
PF12688	120	TPR_5: Tetratrico peptide repeat	97.76
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.75
PRK15331	165	chaperone protein SicA; Provisional	97.74
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.74
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.72
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.69
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.68
PRK15331	165	chaperone protein SicA; Provisional	97.67
KOG2076	895	consensus RNA polymerase III transcription factor	97.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.63
KOG2076	895	consensus RNA polymerase III transcription factor	97.62
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.58
PF13428	44	TPR_14: Tetratricopeptide repeat	97.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.54
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.54
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.53
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.52
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.52
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.46
PRK11906	458	transcriptional regulator; Provisional	97.43
PRK14574	822	hmsH outer membrane protein; Provisional	97.41
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.4
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.36
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.35
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.33
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.32
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.29
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.28
PF13428	44	TPR_14: Tetratricopeptide repeat	97.23
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.21
KOG4555	175	consensus TPR repeat-containing protein [Function	97.2
PF13371	73	TPR_9: Tetratricopeptide repeat	97.17
PRK14574	822	hmsH outer membrane protein; Provisional	97.16
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.15
KOG2003	840	consensus TPR repeat-containing protein [General f	97.15
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	97.12
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.12
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.09
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.08
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.04
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	97.02
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.98
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.95
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.95
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.95
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.93
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.84
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.84
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.83
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.82
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.79
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.76
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.76
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	96.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.71
PF13431	34	TPR_17: Tetratricopeptide repeat	96.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.53
KOG1129	478	consensus TPR repeat-containing protein [General f	96.52
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.48
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.47
PRK10941	269	hypothetical protein; Provisional	96.45
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.42
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.39
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.36
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.32
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	96.29
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	96.19
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.18
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.16
KOG2003	840	consensus TPR repeat-containing protein [General f	96.1
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.07
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.03
KOG3571	626	consensus Dishevelled 3 and related proteins [Gene	95.98
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.93
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.86
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.78
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.76
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	95.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.69
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.69
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.65
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.61
PLN03218	1060	maturation of RBCL 1; Provisional	95.6
PLN03218	1060	maturation of RBCL 1; Provisional	95.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.53
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.51
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.51
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.44
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.4
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.4
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.34
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.17
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.16
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.13
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.0
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.91
PLN03077	857	Protein ECB2; Provisional	94.9
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	94.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.74
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.68
KOG1310	758	consensus WD40 repeat protein [General function pr	94.63
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.26
KOG3532	1051	consensus Predicted protein kinase [General functi	94.25
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.02
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.81
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	93.7
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.68
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.61
KOG1586	288	consensus Protein required for fusion of vesicles	93.6
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.47
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.43
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.15
PLN03077	857	Protein ECB2; Provisional	93.11
KOG3364	149	consensus Membrane protein involved in organellar	93.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.97
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	92.74
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	92.62
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.51
KOG0495	913	consensus HAT repeat protein [RNA processing and m	92.48
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.33
KOG1586	288	consensus Protein required for fusion of vesicles	92.27
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.0
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.53
COG2912	269	Uncharacterized conserved protein [Function unknow	91.39
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.07
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.77
KOG3785	557	consensus Uncharacterized conserved protein [Funct	90.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.65
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	90.47
KOG3580	1027	consensus Tight junction proteins [Signal transduc	90.37
KOG0495	913	consensus HAT repeat protein [RNA processing and m	90.11
PRK11186	667	carboxy-terminal protease; Provisional	90.05
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	90.01
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.82
KOG1892	1629	consensus Actin filament-binding protein Afadin [C	89.79
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	89.67
KOG2796	366	consensus Uncharacterized conserved protein [Funct	89.64
KOG3606	358	consensus Cell polarity protein PAR6 [Signal trans	89.44
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.23
KOG3553	124	consensus Tax interaction protein TIP1 [Cell wall/	89.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	88.52
COG3975	558	Predicted protease with the C-terminal PDZ domain	88.28
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.06
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.86
PRK04841	903	transcriptional regulator MalT; Provisional	87.26
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	87.03
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	86.91
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	86.76
PRK10139	455	serine endoprotease; Provisional	86.6
COG4976	287	Predicted methyltransferase (contains TPR repeat)	86.3
PRK10942	473	serine endoprotease; Provisional	86.06
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	85.83
PLN00049	389	carboxyl-terminal processing protease; Provisional	85.64
KOG3550	207	consensus Receptor targeting protein Lin-7 [Extrac	85.63
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	85.35
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.33
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.15
PRK04841	903	transcriptional regulator MalT; Provisional	85.02
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	85.0
KOG4340	459	consensus Uncharacterized conserved protein [Funct	84.72
COG3118	304	Thioredoxin domain-containing protein [Posttransla	84.47
PRK10898	353	serine endoprotease; Provisional	84.19
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	83.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	83.18
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	82.49
KOG3209	984	consensus WW domain-containing protein [General fu	82.33
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	82.16
PRK10139	455	serine endoprotease; Provisional	81.7
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	81.39
KOG2471	696	consensus TPR repeat-containing protein [General f	81.32
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	81.29
PRK10779	449	zinc metallopeptidase RseP; Provisional	81.08
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	80.14

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.61  E-value=3.5e-15  Score=149.27  Aligned_cols=104  Identities=31%  Similarity=0.472  Sum_probs=91.5

Q ss_pred             ccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHh
Q 019871          212 KERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVR  290 (334)
Q Consensus       212 ~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~  290 (334)
                      +|+..+ ++|+|.+|+++|+|++|+.+|++||+++|++++...+|||+||||..+|++++|+.+|++||++++..+..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~  150 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTIL  150 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHH
Confidence            455544 4599999999999999999999999999998542356999999999999999999999999999666677899


Q ss_pred             cChhhHHHhcChHHHHHHHHHHHhh
Q 019871          291 TDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +||+|+.+|++|+|+++++...+.-
T Consensus       151 ~DpdL~plR~~pef~eLlee~rk~G  175 (453)
T PLN03098        151 NDPDLAPFRASPEFKELQEEARKGG  175 (453)
T ss_pred             hCcchhhhcccHHHHHHHHHHHHhC
Confidence            9999999999999999998665543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=4e-14  Score=142.74  Aligned_cols=223  Identities=19%  Similarity=0.329  Sum_probs=165.3

Q ss_pred             hhhccceEEEeecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhh
Q 019871           80 QEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (334)
Q Consensus        80 ~~~~~~~~~v~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G  159 (334)
                      |.....+|...++=-..|.+ ..+-+.||++.    |.++  .|+.+++.-+-+    |.++|  .+|..+-. ...|+|
T Consensus       240 f~~a~q~y~~a~el~~~it~-~~n~aA~~~e~----~~~~--~c~~~c~~a~E~----gre~r--ad~klIak-~~~r~g  305 (539)
T KOG0548|consen  240 FETAIQHYAKALELATDITY-LNNIAAVYLER----GKYA--ECIELCEKAVEV----GRELR--ADYKLIAK-ALARLG  305 (539)
T ss_pred             HHHHHHHHHHHHhHhhhhHH-HHHHHHHHHhc----cHHH--HhhcchHHHHHH----hHHHH--HHHHHHHH-HHHHhh
Confidence            44555556555552244444 44556777766    5555  356777774444    77888  55555444 557799


Q ss_pred             hHHHHhhcccchhhh-hchhcHHHHHHHhhchhhhhhhHH--HHHHHHHHHHHhhccCHH-HHHHHHHHHHHcCCHHHHH
Q 019871          160 PLLMKMQKRYGKMEQ-TGELSEKEIIRAERNSGVISNRVR--EIQMQNYMKKKEQKERRE-QDLREGLQLYRTGKYEVAR  235 (334)
Q Consensus       160 ~V~lkLek~~~aie~-~~~l~ek~~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~-~~~nlG~al~~~g~yeeAl  235 (334)
                      +.|.+++++..++++ ..+++++.       .+.+...+.  |.++..+.....++|..+ +....|+.+|+.|+|.+|+
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~R-------t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av  378 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHR-------TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV  378 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhc-------CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence            999999999999985 34666653       244444443  445556666666666654 4459999999999999999


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhcChHHHHHHHHHHHh
Q 019871          236 EKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLENLRASEEFDVLLKRFDES  314 (334)
Q Consensus       236 ~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~  314 (334)
                      ..|++||+.+|++   +.+|.|+|.||.++|++.+|+++++++|+++|+... ++++.-.   ++...+|..+++.|++.
T Consensus       379 ~~YteAIkr~P~D---a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a---l~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  379 KHYTEAIKRDPED---ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA---LRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHhcCCch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            9999999999999   689999999999999999999999999999999888 7777544   44556899999999999


Q ss_pred             h----hchhHHHHHHHhhc
Q 019871          315 F----INENAINAIKSLFG  329 (334)
Q Consensus       315 ~----~~~~ai~~~k~~~~  329 (334)
                      +    .+.++|..|+.+.-
T Consensus       453 le~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  453 LELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HhcCchhHHHHHHHHHHHH
Confidence            8    56678888887753

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.27  E-value=1.5e-11  Score=91.60  Aligned_cols=66  Identities=29%  Similarity=0.397  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC-ChHHHHHHHHHHHHcCC
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVKAGLSALEDALLAGY  283 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG-~~eeAl~~lekAIelgp  283 (334)
                      +..++++|..+++.|+|++|+.+|+++|+++|++   +.+|+++|.||..+| ++++|++++++||+++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3456699999999999999999999999999998   689999999999999 79999999999999988

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.26  E-value=4.9e-11  Score=122.54  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=120.5

Q ss_pred             HHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhh--hhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGV--ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG  229 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~--~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g  229 (334)
                      .-..|+||..+..+..++..+. ++.+.. ..-++-|.+.  +..++.++++..|.+++++.|+.++++ |+|+++-..|
T Consensus       255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G  334 (966)
T KOG4626|consen  255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG  334 (966)
T ss_pred             HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc
Confidence            4568999999999999988543 444322 1123445553  346778889999999999999999998 9999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHH
Q 019871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLK  309 (334)
Q Consensus       230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~  309 (334)
                      +..||.++|.+||.+.|++   +.+.+|+|.+|..+|++++|...|++|++..|+... +-.+-. .-+++.+.++++|.
T Consensus       335 ~V~ea~~cYnkaL~l~p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa-a~nNLa-~i~kqqgnl~~Ai~  409 (966)
T KOG4626|consen  335 SVTEAVDCYNKALRLCPNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA-AHNNLA-SIYKQQGNLDDAIM  409 (966)
T ss_pred             chHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh-hhhhHH-HHHHhcccHHHHHH
Confidence            9999999999999999998   679999999999999999999999999999887433 333322 12455567777777


Q ss_pred             HHHHhh
Q 019871          310 RFDESF  315 (334)
Q Consensus       310 ~~~e~~  315 (334)
                      .|++.+
T Consensus       410 ~Ykeal  415 (966)
T KOG4626|consen  410 CYKEAL  415 (966)
T ss_pred             HHHHHH
Confidence            777776

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.22  E-value=1.1e-10  Score=100.62  Aligned_cols=88  Identities=10%  Similarity=0.071  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|...+.++|.+...+ ++|.++.+.|+|++|+..|+++++++|++   +.+|+++|.|+..+|++++|+..|+
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~~~g~~~eAi~~~~  116 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLKMMGEPGLAREAFQ  116 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4557788889999999887765 99999999999999999999999999998   5799999999999999999999999


Q ss_pred             HHHHcCCCCHHH
Q 019871          277 DALLAGYEDFKR  288 (334)
Q Consensus       277 kAIelgp~~~~~  288 (334)
                      +||++.|++...
T Consensus       117 ~Al~~~p~~~~~  128 (144)
T PRK15359        117 TAIKMSYADASW  128 (144)
T ss_pred             HHHHhCCCChHH
Confidence            999999998764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.21  E-value=1.5e-11  Score=126.26  Aligned_cols=173  Identities=15%  Similarity=0.100  Sum_probs=120.5

Q ss_pred             HHHHhhhhHHHHhhcccchhhhhc-hhcHHHHH-HHhhchhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871          153 TIRQRVGPLLMKMQKRYGKMEQTG-ELSEKEII-RAERNSGVISNRVR--EIQMQNYMKKKEQKERREQDL-REGLQLYR  227 (334)
Q Consensus       153 ai~~R~G~V~lkLek~~~aie~~~-~l~ek~~~-~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG~al~~  227 (334)
                      .+++..|++...+++..++-+.++ ++.....| -+|-|.|-+.+...  ..+++.|.++..++|+..+++ |+|++|-+
T Consensus       185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke  264 (966)
T KOG4626|consen  185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE  264 (966)
T ss_pred             hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence            455667777777666666665333 22222222 24666665554444  445789999999999988876 99999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHH
Q 019871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVL  307 (334)
Q Consensus       228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~l  307 (334)
                      ++.|++|+.+|.+|+.+.|++   +.+|-|+||+|..+|..+-||..|++||++.|...+ +..+-.. .|++.++..+.
T Consensus       265 ~~~~d~Avs~Y~rAl~lrpn~---A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~-Ay~Nlan-ALkd~G~V~ea  339 (966)
T KOG4626|consen  265 ARIFDRAVSCYLRALNLRPNH---AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD-AYNNLAN-ALKDKGSVTEA  339 (966)
T ss_pred             HhcchHHHHHHHHHHhcCCcc---hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH-HHhHHHH-HHHhccchHHH
Confidence            999999999999999999998   679999999999999999999999999999997443 2222211 23333344444


Q ss_pred             HHH---------------------HHHhhhchhHHHHHHHhhcc
Q 019871          308 LKR---------------------FDESFINENAINAIKSLFGL  330 (334)
Q Consensus       308 L~~---------------------~~e~~~~~~ai~~~k~~~~~  330 (334)
                      .+.                     |.|....+.|+..++..|.+
T Consensus       340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v  383 (966)
T KOG4626|consen  340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV  383 (966)
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            444                     44555556677777666553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=6.9e-11  Score=112.80  Aligned_cols=89  Identities=20%  Similarity=0.210  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+..+.++..|.++|++.|.++..| |++-+|.++|+|+.|++.++.||.+||.+   +.+|-.+|.+|..+|++++|++
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y---skay~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY---SKAYGRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH---HHHHHHHHHHHHccCcHHHHHH
Confidence            3344556677777777777776666 77777777777777777777777777776   5677777777777777777777


Q ss_pred             HHHHHHHcCCCCH
Q 019871          274 ALEDALLAGYEDF  286 (334)
Q Consensus       274 ~lekAIelgp~~~  286 (334)
                      .|+|||+++|++.
T Consensus       171 aykKaLeldP~Ne  183 (304)
T KOG0553|consen  171 AYKKALELDPDNE  183 (304)
T ss_pred             HHHhhhccCCCcH
Confidence            7777777777754

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=1.7e-10  Score=110.20  Aligned_cols=97  Identities=23%  Similarity=0.275  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChh
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPD  294 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpd  294 (334)
                      ++...+.|+-+++.++|++|+..|++||+++|++   +..|.|||.+|.+||+++.|+++|+.||.++|.+.+.+.+- .
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL-G  156 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL-G  156 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH-H
Confidence            4456699999999999999999999999999999   68999999999999999999999999999999977733322 2


Q ss_pred             hHHHhcChHHHHHHHHHHHhhh
Q 019871          295 LENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       295 l~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ++ .-...+|..+++.|++.+.
T Consensus       157 ~A-~~~~gk~~~A~~aykKaLe  177 (304)
T KOG0553|consen  157 LA-YLALGKYEEAIEAYKKALE  177 (304)
T ss_pred             HH-HHccCcHHHHHHHHHhhhc
Confidence            33 3345789999999999983

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.14  E-value=3.5e-10  Score=97.38  Aligned_cols=107  Identities=14%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       203 ~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .-+.++++++|+.  .+++|.++++.|+|++|+..|++++.++|.+   ..+|+++|.++..+|++++|+.+|++|++++
T Consensus        14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3466778888774  6689999999999999999999999999998   6899999999999999999999999999999


Q ss_pred             CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |.+......- .. .+....++.++++.|++.+.
T Consensus        89 p~~~~a~~~l-g~-~l~~~g~~~eAi~~~~~Al~  120 (144)
T PRK15359         89 ASHPEPVYQT-GV-CLKMMGEPGLAREAFQTAIK  120 (144)
T ss_pred             CCCcHHHHHH-HH-HHHHcCCHHHHHHHHHHHHH
Confidence            9987733221 22 34556788999998888774

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.13  E-value=2.3e-10  Score=84.44  Aligned_cols=65  Identities=23%  Similarity=0.270  Sum_probs=59.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      +.+|..+++.|+|++|+.+|+++++.+|++   +.+|+.+|.|+..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            368999999999999999999999999998   68999999999999999999999999999999863

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.13  E-value=1.2e-09  Score=104.48  Aligned_cols=99  Identities=18%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             Hhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871          186 AERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (334)
Q Consensus       186 a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay  262 (334)
                      .+++.|.++  .+..+.++..|.++++++|+....+ ++|..+...|+|++|+..|+++++++|++   ..+|+|+|.+|
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l  142 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence            355566554  3445777889999999999987765 99999999999999999999999999998   67999999999


Q ss_pred             HHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          263 SKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       263 ~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ...|++++|+++|+++++++|++..
T Consensus       143 ~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999863

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.08  E-value=1.7e-09  Score=112.85  Aligned_cols=156  Identities=10%  Similarity=0.103  Sum_probs=105.7

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK  230 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~  230 (334)
                      ...|.++..+++..++++......+.+  ....+.+.|.+...  ..+.++..|.++++++|++...+ ++|.+++..|+
T Consensus       335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  414 (615)
T TIGR00990       335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE  414 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            445666667677777666322111110  11233444444332  24556677888888888876654 88999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR  310 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~  310 (334)
                      |++|+.+|+++++++|++   ..+|+++|++|.++|++++|+..|+++++..|.+......-.  ..+....+|+++++.
T Consensus       415 ~~~A~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg--~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       415 FAQAGKDYQKSIDLDPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG--ELLLDQNKFDEAIEK  489 (615)
T ss_pred             HHHHHHHHHHHHHcCccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH--HHHHHccCHHHHHHH
Confidence            999999999999999987   568889999999999999999999999998888665222111  123344567778777


Q ss_pred             HHHhhh
Q 019871          311 FDESFI  316 (334)
Q Consensus       311 ~~e~~~  316 (334)
                      |++.+.
T Consensus       490 ~~~Al~  495 (615)
T TIGR00990       490 FDTAIE  495 (615)
T ss_pred             HHHHHh
Confidence            777663

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.00  E-value=5.3e-09  Score=103.01  Aligned_cols=89  Identities=12%  Similarity=0.116  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      +..+.++..|.++++++|++..++ ++|.+++++|+|++|+..++++++++|++   +.+|+++|.+|..+|++++|+.+
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~~~lg~~~eA~~~   92 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTACMKLEEYQTAKAA   92 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHhCCHHHHHHH
Confidence            334557788999999999987765 99999999999999999999999999998   68999999999999999999999


Q ss_pred             HHHHHHcCCCCHH
Q 019871          275 LEDALLAGYEDFK  287 (334)
Q Consensus       275 lekAIelgp~~~~  287 (334)
                      |++|++++|.+..
T Consensus        93 ~~~al~l~P~~~~  105 (356)
T PLN03088         93 LEKGASLAPGDSR  105 (356)
T ss_pred             HHHHHHhCCCCHH
Confidence            9999999999654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.91  E-value=1.6e-08  Score=84.10  Aligned_cols=86  Identities=14%  Similarity=0.102  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.+...+.+.++..|.+...+ ++|.+++.+|+|++|+..|+++++.+|++   ...++++|.||...|++++|+..|+
T Consensus        33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~  109 (135)
T TIGR02552        33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD---PRPYFHAAECLLALGEPESALKALD  109 (135)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3445556666677777765554 88888888888888888888888888887   5688888888888888888888888


Q ss_pred             HHHHcCCCCH
Q 019871          277 DALLAGYEDF  286 (334)
Q Consensus       277 kAIelgp~~~  286 (334)
                      ++++++|++.
T Consensus       110 ~al~~~p~~~  119 (135)
T TIGR02552       110 LAIEICGENP  119 (135)
T ss_pred             HHHHhccccc
Confidence            8888888643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=98.90  E-value=1.8e-08  Score=104.38  Aligned_cols=112  Identities=16%  Similarity=0.035  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..+.++++++|++...+ .+|.++...|++++|+..|++|++++|++   +.+|+++|.+|..+|++++|+.+|++
T Consensus       321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            456778889999999987776 89999999999999999999999999998   67999999999999999999999999


Q ss_pred             HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      |++++|.+....... ... +....+|++++..+++.+
T Consensus       398 Al~l~P~~~~~~~~~-~~~-~~~~g~~eeA~~~~~~~l  433 (553)
T PRK12370        398 CLKLDPTRAAAGITK-LWI-TYYHTGIDDAIRLGDELR  433 (553)
T ss_pred             HHhcCCCChhhHHHH-HHH-HHhccCHHHHHHHHHHHH
Confidence            999999976532211 111 222345666666666554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.90  E-value=2.9e-08  Score=103.63  Aligned_cols=126  Identities=9%  Similarity=0.027  Sum_probs=97.1

Q ss_pred             hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871          157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY  231 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y  231 (334)
                      ..|.++..++++..+++......+..  ....+.+.|.+..  +..+.++..|.++++++|+....+ ++|.+++++|+|
T Consensus       370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~  449 (615)
T TIGR00990       370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence            45666777777777766322111111  0123444444443  335667889999999999876654 999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ++|+..|+++++.+|++   +.+|+++|.+|..+|++++|+..|++|+++.|.+
T Consensus       450 ~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       450 ASSMATFRRCKKNFPEA---PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             HHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence            99999999999999998   5799999999999999999999999999999874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.89  E-value=2.8e-08  Score=90.26  Aligned_cols=110  Identities=10%  Similarity=0.096  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-HHCCC--hHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY-SKLNQ--VKAGLSALE  276 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay-~~lG~--~eeAl~~le  276 (334)
                      .+..+.++++.+|++.+.+ .+|..+...|+|++|+.+|+++++++|++   +.+++++|.++ ...|+  .++|+..|+
T Consensus        58 ~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~  134 (198)
T PRK10370         58 QLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQHMTPQTREMID  134 (198)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            3455566666666655544 66666666666666666666666666665   45666666653 45555  366666666


Q ss_pred             HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +|++++|++.... ..-.+.. ....+|++++..|++.+
T Consensus       135 ~al~~dP~~~~al-~~LA~~~-~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        135 KALALDANEVTAL-MLLASDA-FMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHhCCCChhHH-HHHHHHH-HHcCCHHHHHHHHHHHH
Confidence            6666666654421 1122221 22345556655555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.89  E-value=2.6e-08  Score=82.71  Aligned_cols=109  Identities=18%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             HHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          204 NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       204 ~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .+.+.++++|.... .+.+|..+++.|+|++|+..|++++.++|++   +.+|+++|.+|..+|++++|+..|+++++.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45677788887755 4599999999999999999999999999998   6899999999999999999999999999999


Q ss_pred             CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhc
Q 019871          283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFIN  317 (334)
Q Consensus       283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~  317 (334)
                      |.+......-. . ......+++.+++.|++.+..
T Consensus        82 p~~~~~~~~la-~-~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        82 PDDPRPYFHAA-E-CLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             CCChHHHHHHH-H-HHHHcCCHHHHHHHHHHHHHh
Confidence            99876332221 1 233456788888888777743

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.85  E-value=4.1e-08  Score=108.17  Aligned_cols=125  Identities=12%  Similarity=0.087  Sum_probs=90.1

Q ss_pred             hhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871          187 ERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (334)
Q Consensus       187 ~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~  263 (334)
                      +.+.+.+...+  .+.+...|.++++++|+....+ ++|.++.+.|++++|+..|+++++++|++   +.+++|+|.+|.
T Consensus       612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---~~a~~nLA~al~  688 (987)
T PRK09782        612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD---PALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence            34444444333  3556778888888888876665 88888888888888888888888888887   578888888888


Q ss_pred             HCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          264 KLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       264 ~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      .+|++++|+.+|++|+++.|++...-..=+.+.  ...-.|+.+++.|.....
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~--~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQN--QQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH--HHHHHHHHHHHHHHHHhh
Confidence            888888888888888888887655333223322  222357777777766653

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.84  E-value=5.7e-08  Score=92.96  Aligned_cols=112  Identities=12%  Similarity=0.154  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhhcc---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          199 EIQMQNYMKKKEQKE---R--REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       199 e~q~~~y~~~iel~~---~--~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      |.++..+.+.++..+   .  ....+++|.++...|++++|+..|+++++++|++   +.+|+++|.+|..+|++++|+.
T Consensus        43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHH
Confidence            555566666665332   2  2335699999999999999999999999999998   6899999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          274 ALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       274 ~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +|++|++++|++.... ...... +....+++++++.|++.+
T Consensus       120 ~~~~Al~l~P~~~~a~-~~lg~~-l~~~g~~~eA~~~~~~al  159 (296)
T PRK11189        120 AFDSVLELDPTYNYAY-LNRGIA-LYYGGRYELAQDDLLAFY  159 (296)
T ss_pred             HHHHHHHhCCCCHHHH-HHHHHH-HHHCCCHHHHHHHHHHHH
Confidence            9999999999976532 222222 334456777777666655

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.83  E-value=2.4e-08  Score=90.64  Aligned_cols=99  Identities=11%  Similarity=0.021  Sum_probs=85.3

Q ss_pred             HHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 019871          185 RAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQL-YRTGK--YEVAREKFESVLGSKPTPEESSVASYNV  258 (334)
Q Consensus       185 ~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al-~~~g~--yeeAl~~fekALeldP~~~e~~~a~yNl  258 (334)
                      ..|...|.++...  .+.+...|.+++++.|++...+ ++|.++ +..|+  +++|+..++++++++|++   ..+++++
T Consensus        74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~L  150 (198)
T PRK10370         74 EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLL  150 (198)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHH
Confidence            4566666665444  4667899999999999987776 999986 68788  599999999999999998   6799999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          259 ACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       259 A~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      |.++..+|++++|+.+++++++++|.+.
T Consensus       151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        151 ASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999853

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.83  E-value=1.1e-07  Score=88.31  Aligned_cols=139  Identities=18%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             hHHHHHHHhhhhHHHHhhcccchhhh-hchhcHHH--HHHHhhchhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHH
Q 019871          149 RTMYTIRQRVGPLLMKMQKRYGKMEQ-TGELSEKE--IIRAERNSGVISNRVR--EIQMQNYMKKKEQKERREQDL-REG  222 (334)
Q Consensus       149 ~v~sai~~R~G~V~lkLek~~~aie~-~~~l~ek~--~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG  222 (334)
                      .+...++...|--|+.-++...+-.- .+++ +++  ...+|.....++..+.  +.+-+.|.+++.++|+..+.+ |-|
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG  110 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG  110 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence            34455666666667764444333221 1111 111  1345667777776664  556789999999999987776 999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV  289 (334)
Q Consensus       223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i  289 (334)
                      .-++..|+|++|...|++|+. +|.+++.+.+|-|+|.|-.+.|+++.|.++|+++|+++|++...+
T Consensus       111 ~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         111 AFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             HHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence            999999999999999999998 698887789999999999999999999999999999999876533

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=4e-08  Score=99.81  Aligned_cols=116  Identities=13%  Similarity=0.209  Sum_probs=103.2

Q ss_pred             hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+-...++..|.++|..+|+++..| |++.+|.++|.|.+|++.++++|+++|++   ..+|...|+|+..+.+|+.|++
T Consensus       371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~---~kgy~RKg~al~~mk~ydkAle  447 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF---IKAYLRKGAALRAMKEYDKALE  447 (539)
T ss_pred             ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667889999999999999999 99999999999999999999999999998   7899999999999999999999


Q ss_pred             HHHHHHHcCCCCH-----------------------HHHhcChhhHHHhcChHHHHHHHHHHH
Q 019871          274 ALEDALLAGYEDF-----------------------KRVRTDPDLENLRASEEFDVLLKRFDE  313 (334)
Q Consensus       274 ~lekAIelgp~~~-----------------------~~i~~Dpdl~~Lr~dp~F~~lL~~~~e  313 (334)
                      .|+++++++|++.                       ...+.||+...|.+||-.+.++.++++
T Consensus       448 ay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~  510 (539)
T KOG0548|consen  448 AYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQE  510 (539)
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHh
Confidence            9999999999543                       235678999999999988888877654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.78  E-value=2.4e-07  Score=80.63  Aligned_cols=158  Identities=15%  Similarity=0.091  Sum_probs=99.1

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRT  228 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~  228 (334)
                      +....|.++...+++..+++.........  ....+...+.+....  .+.+...|.+.++..|+.... +++|..++..
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  112 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ  112 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            44567778888777777776432111110  112223333333222  345567777788877776554 4889999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL  308 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL  308 (334)
                      |+|++|+..|++++...+.. .....++++|.+|...|++++|+..|+++++.+|.+......--  ..+....++.+++
T Consensus       113 g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~  189 (234)
T TIGR02521       113 GKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA--ELYYLRGQYKDAR  189 (234)
T ss_pred             ccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHH--HHHHHcCCHHHHH
Confidence            99999999999998754321 12568888999999999999999999999998887655322111  1122234555555


Q ss_pred             HHHHHh
Q 019871          309 KRFDES  314 (334)
Q Consensus       309 ~~~~e~  314 (334)
                      ..+++.
T Consensus       190 ~~~~~~  195 (234)
T TIGR02521       190 AYLERY  195 (234)
T ss_pred             HHHHHH
Confidence            555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=1.4e-08  Score=105.07  Aligned_cols=124  Identities=13%  Similarity=0.107  Sum_probs=91.5

Q ss_pred             hhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871          187 ERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (334)
Q Consensus       187 ~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~  263 (334)
                      |...|+...-.  .+.++.++.++++++|+++-++ -+|-.+....+||.|..+|++||..+|.+   ..|||.+|.+|.
T Consensus       424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh---YnAwYGlG~vy~  500 (638)
T KOG1126|consen  424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH---YNAWYGLGTVYL  500 (638)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh---hHHHHhhhhhee
Confidence            55555544333  3556788888888888887777 77888888888888888888888888887   789999999999


Q ss_pred             HCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          264 KLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       264 ~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ++++++.|.-+|++|++++|.+...+-..-.  .+...++.+++|.-|++++
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~--~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGR--IQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhH--HHHHhhhhhHHHHHHHHHH
Confidence            9999999999999999999987654333221  1222234444444444444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=2.9e-08  Score=74.41  Aligned_cols=63  Identities=25%  Similarity=0.249  Sum_probs=58.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       222 G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..++.+.++|++|++++++++.++|++   +..|+.+|.||..+|++++|+.+|+++++.+|++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            467899999999999999999999998   579999999999999999999999999999997544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.77  E-value=5.1e-08  Score=85.94  Aligned_cols=83  Identities=13%  Similarity=0.008  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.+..-|.-...++|.....+ ++|.++-.+|+|++||.+|.+|+.++|++   +.+++|.|.||.++|+.+.|.+.|+
T Consensus        51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~  127 (157)
T PRK15363         51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---PQAPWAAAECYLACDNVCYAIKALK  127 (157)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3445666777777888877665 99999999999999999999999999998   5799999999999999999999999


Q ss_pred             HHHHcCC
Q 019871          277 DALLAGY  283 (334)
Q Consensus       277 kAIelgp  283 (334)
                      .||..--
T Consensus       128 ~Ai~~~~  134 (157)
T PRK15363        128 AVVRICG  134 (157)
T ss_pred             HHHHHhc
Confidence            9998853

>PLN02789 farnesyltranstransferase

Probab=98.74  E-value=2.8e-07  Score=89.89  Aligned_cols=123  Identities=10%  Similarity=-0.015  Sum_probs=91.1

Q ss_pred             HHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhhHH---HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH--
Q 019871          161 LLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNRVR---EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY--  231 (334)
Q Consensus       161 V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~l~---e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y--  231 (334)
                      ++...++...+++...   .++.+. ..+|...+.+...+.   +.++..+.+.++.+|+....+ ++|.++.++|++  
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~-ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGN-YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence            4556666666666321   222221 345666776666553   446677778888888886665 788888888874  


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++++..++++|+++|++   ..+|++++.++..+|++++|+++++++|+.+|.|..
T Consensus       125 ~~el~~~~kal~~dpkN---y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s  177 (320)
T PLN02789        125 NKELEFTRKILSLDAKN---YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             HHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence            78889999999999988   679999999999999999999999999999988765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.73  E-value=9.2e-08  Score=94.25  Aligned_cols=94  Identities=10%  Similarity=0.069  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      +++..|..++..|+|++|+.+|++||+++|++   +.+|+++|.||..+|++++|+.+|++||+++|.+...... ... 
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~-lg~-   78 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR-KGT-   78 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH-HHH-
Confidence            45688999999999999999999999999998   6799999999999999999999999999999997763322 122 


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 019871          297 NLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .+....+|.+++..|++.+
T Consensus        79 ~~~~lg~~~eA~~~~~~al   97 (356)
T PLN03088         79 ACMKLEEYQTAKAALEKGA   97 (356)
T ss_pred             HHHHhCCHHHHHHHHHHHH
Confidence            2334568888888888877

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.71  E-value=9.3e-08  Score=84.27  Aligned_cols=69  Identities=12%  Similarity=0.045  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      ..+..|..+++.|+|++|...|+-...+||.+   ...|||+|.|+..+|++++||..|.+|+.++|+++..
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            35699999999999999999999999999999   6899999999999999999999999999999998763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.70  E-value=2.1e-07  Score=102.64  Aligned_cols=116  Identities=8%  Similarity=-0.006  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          196 RVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      +..+.++..|.++++++|+....+++|.++.++|++++|+..|+++++++|++   +.+++++|.++..+|++++|+..|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---SNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34566788999999999985555699999999999999999999999999999   679999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          276 EDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       276 ekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ++|++++|++.... ..-... +....++.+++..|++.+.
T Consensus       667 ~~AL~l~P~~~~a~-~nLA~a-l~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        667 ERAHKGLPDDPALI-RQLAYV-NQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHhCCCCHHHH-HHHHHH-HHHCCCHHHHHHHHHHHHh
Confidence            99999999987632 222222 3445667777777777763

>PRK12370 invasion protein regulator; Provisional

Probab=98.69  E-value=6.9e-07  Score=92.63  Aligned_cols=112  Identities=9%  Similarity=-0.062  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYR---------TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~---------~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~  268 (334)
                      +.++..|.++++++|+....+ .+|.++..         .+++++|+..+++|++++|++   +.+|..+|.++..+|++
T Consensus       278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~---~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN---PQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCH
Confidence            567788999999999987765 77776653         345899999999999999999   67999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          269 KAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       269 eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ++|+..|++|++++|++...... -.. .+....++++++..|++.+
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~-lg~-~l~~~G~~~eAi~~~~~Al  399 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYY-YGW-NLFMAGQLEEALQTINECL  399 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence            99999999999999998763211 111 1222345555555555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.69  E-value=1.7e-07  Score=99.19  Aligned_cols=110  Identities=14%  Similarity=0.044  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      ++..|.+++++.|+....+ ++|.++.+.|++++|+..|+++++++|++   +.+++++|.+|..+|++++|+..|++++
T Consensus       269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~---~~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL---PYVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5678888889999876665 99999999999999999999999999998   5789999999999999999999999999


Q ss_pred             HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +.+|++..+...-  -..+....+++++++.|++.+
T Consensus       346 ~~~P~~~~~~~~~--a~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        346 REKGVTSKWNRYA--AAALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             HhCccchHHHHHH--HHHHHHCCCHHHHHHHHHHHH
Confidence            9999865422111  112444566777776666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.69  E-value=2.8e-07  Score=73.77  Aligned_cols=89  Identities=15%  Similarity=0.175  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      +.++..|.+.++..|+.    ...+.+|.++++.|+|++|+..|++++..+|++.....+++++|.+|..+|++++|+..
T Consensus        19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~   98 (119)
T TIGR02795        19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT   98 (119)
T ss_pred             HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence            34455666666666653    34568999999999999999999999999998644457899999999999999999999


Q ss_pred             HHHHHHcCCCCHH
Q 019871          275 LEDALLAGYEDFK  287 (334)
Q Consensus       275 lekAIelgp~~~~  287 (334)
                      ++++++..|++..
T Consensus        99 ~~~~~~~~p~~~~  111 (119)
T TIGR02795        99 LQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHCcCChh
Confidence            9999999998643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.1e-07  Score=94.47  Aligned_cols=160  Identities=13%  Similarity=0.167  Sum_probs=118.9

Q ss_pred             hhhHHHHhhcccchhhhhc---hhcHHHH-HHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHH-------------HH
Q 019871          158 VGPLLMKMQKRYGKMEQTG---ELSEKEI-IRAERNSGVISNRVREIQMQNYMKKKEQKERREQD-------------LR  220 (334)
Q Consensus       158 ~G~V~lkLek~~~aie~~~---~l~ek~~-~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~-------------~n  220 (334)
                      ...++..+.++.+++.-..   .+.+... ..--|+...++..-.+.+...|++++.+.|.....             -.
T Consensus       175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~  254 (486)
T KOG0550|consen  175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE  254 (486)
T ss_pred             hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence            4556677777777765221   2222211 11244566666666788889999999998875442             28


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR  299 (334)
Q Consensus       221 lG~al~~~g~yeeAl~~fekALeldP~~~e-~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr  299 (334)
                      .|+-+|+.|+|..|.++|..||.+||++-. .+..|+|+|.++..+|+..+||.+|+.|+++++.+.+.++.-..  .-.
T Consensus       255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~--c~l  332 (486)
T KOG0550|consen  255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN--CHL  332 (486)
T ss_pred             hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH--HHH
Confidence            999999999999999999999999999742 35789999999999999999999999999999998875443322  122


Q ss_pred             cChHHHHHHHHHHHhhhchh
Q 019871          300 ASEEFDVLLKRFDESFINEN  319 (334)
Q Consensus       300 ~dp~F~~lL~~~~e~~~~~~  319 (334)
                      ..++|..+++.|++...++.
T Consensus       333 ~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHHHHHHhhcc
Confidence            34689999998888775543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.66  E-value=3.3e-07  Score=97.69  Aligned_cols=125  Identities=7%  Similarity=-0.046  Sum_probs=96.9

Q ss_pred             HhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871          186 AERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (334)
Q Consensus       186 a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay  262 (334)
                      +.++.+.+...+  .+.+..-+...+++.|+...++ +++.++.+++++++|+..+++++..+|++   +.+++++|.|+
T Consensus        88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---~~~~~~~a~~l  164 (694)
T PRK15179         88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---AREILLEAKSW  164 (694)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHH
Confidence            344555554433  3666778888999999988776 99999999999999999999999999998   68999999999


Q ss_pred             HHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          263 SKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       263 ~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .++|++++|+..|++++..+|++.... ..-. ..|+..++-.++...|++.+
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~-~~~a-~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFENGY-VGWA-QSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcHHHH-HHHH-HHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999888765522 2111 23555566666666666654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.3e-06  Score=86.77  Aligned_cols=148  Identities=17%  Similarity=0.128  Sum_probs=100.7

Q ss_pred             ccccCcEeeeeccc--cc---cccccccchhhHHHHHH-HhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhh
Q 019871          123 MFQVGDKVLATSAV--FG---TEIWPAAEYGRTMYTIR-QRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNR  196 (334)
Q Consensus       123 ~i~~gD~v~~~sa~--fg---~~~w~~~~~~~v~sai~-~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~  196 (334)
                      .|-++-+|.+.--+  |.   ++-|.-..-.++..|.+ ...|+.+.+.+++..|+..+.. ..+ .+. ++..    ..
T Consensus       173 ~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yer-av~-~l~-~~~~----~~  245 (397)
T KOG0543|consen  173 LIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYER-AVS-FLE-YRRS----FD  245 (397)
T ss_pred             CCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHH-HHH-Hhh-cccc----CC
Confidence            58888888883222  33   34443222234444444 4489999998888877764320 000 010 0001    11


Q ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          197 VREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      ..+.+..-       ...-.-.+|++.++.++++|.+|+..++++|+++|+|   ..++|.+|-||..+|+++.|+.+|+
T Consensus       246 ~ee~~~~~-------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---~KALyRrG~A~l~~~e~~~A~~df~  315 (397)
T KOG0543|consen  246 EEEQKKAE-------ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---VKALYRRGQALLALGEYDLARDDFQ  315 (397)
T ss_pred             HHHHHHHH-------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhhccHHHHHHHHH
Confidence            12222111       1122345699999999999999999999999999999   6899999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      +|+++.|+|..
T Consensus       316 ka~k~~P~Nka  326 (397)
T KOG0543|consen  316 KALKLEPSNKA  326 (397)
T ss_pred             HHHHhCCCcHH
Confidence            99999999843

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.65  E-value=4.6e-07  Score=79.08  Aligned_cols=70  Identities=17%  Similarity=0.156  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+++|..+...|+|++|+..|++++.+.|+....+.+|+|+|.+|..+|++++|+..|++|+.+.|.+..
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~  107 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ  107 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            4599999999999999999999999998765333569999999999999999999999999999998665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.65  E-value=3.4e-07  Score=80.46  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+++|..+...|+|++|+.+|++++++.|+.++...+|+++|.+|..+|++++|+.+|++|++..|.+..
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            3599999999999999999999999988875433578999999999999999999999999999998665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.64  E-value=7.5e-07  Score=65.10  Aligned_cols=66  Identities=32%  Similarity=0.427  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .+++|..++..|++++|+..|+++++..|.+   ..+++++|.+|...|++++|+.+|+++++..|.+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            3567778888888888888888888888776   46788888888888888888888888888877754

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.63  E-value=5.6e-08  Score=71.88  Aligned_cols=59  Identities=29%  Similarity=0.360  Sum_probs=54.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      +++.|+|++|+..|++++..+|++   ..+++.+|.||.+.|++++|...|++++..+|++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            468999999999999999999998   68999999999999999999999999999999853

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.1e-07  Score=96.15  Aligned_cols=69  Identities=20%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV  289 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i  289 (334)
                      .-++|+-+|+.|+|++||++|++||++.|+-   +.-|.|+|.||..+|++++-++++.+|++++|++.+.+
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl  186 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL  186 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence            4499999999999999999999999999996   57899999999999999999999999999999987733

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.63  E-value=1.1e-07  Score=73.92  Aligned_cols=76  Identities=28%  Similarity=0.338  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhhccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKER---REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       199 e~q~~~y~~~iel~~~---~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      +.++.-|.+.++..|.   +...+.+|.++++.|+|++|+..+++ ++.+|.+   ...++-+|.||.++|++++|++.|
T Consensus         6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3455666677777773   23445899999999999999999999 8888876   578888999999999999999999


Q ss_pred             HHH
Q 019871          276 EDA  278 (334)
Q Consensus       276 ekA  278 (334)
                      ++|
T Consensus        82 ~~~   84 (84)
T PF12895_consen   82 EKA   84 (84)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            986

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=2.1e-07  Score=85.25  Aligned_cols=91  Identities=19%  Similarity=0.139  Sum_probs=71.9

Q ss_pred             hhhhHHHHHHHHHHHHHhhccCHHH-----HH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC
Q 019871          193 ISNRVREIQMQNYMKKKEQKERREQ-----DL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (334)
Q Consensus       193 ~~~~l~e~q~~~y~~~iel~~~~~~-----~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG  266 (334)
                      .-.+..+.+...|..++++-|....     +| |+|.++.++++++.||..+.+||+++|.+   -.|+-.+|-+|.++.
T Consensus       106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---EKALERRAEAYEKME  182 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---HHHHHHHHHHHHhhh
Confidence            3455667777888888887765322     23 88888888888888888888888888887   467888888888888


Q ss_pred             ChHHHHHHHHHHHHcCCCCH
Q 019871          267 QVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       267 ~~eeAl~~lekAIelgp~~~  286 (334)
                      ++++|+++|++.++++|...
T Consensus       183 k~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  183 KYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             hHHHHHHHHHHHHHhCcchH
Confidence            88888888888888888743

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=7.2e-07  Score=89.81  Aligned_cols=115  Identities=16%  Similarity=0.104  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      |-++.-+..++.++|+-..++ -+|-.+.++++-..|+.+|++|++++|.+   ..+||.+|-+|..++.+.-|+-+|++
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---yRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---YRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence            556677778899999988877 88999999999999999999999999998   68999999999999999999999999


Q ss_pred             HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHHHhhccc
Q 019871          278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLL  331 (334)
Q Consensus       278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~~~  331 (334)
                      |+++-|+|..               -|+.+-++|.+.-..+.||+-+|...-+|
T Consensus       424 A~~~kPnDsR---------------lw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  424 ALELKPNDSR---------------LWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHhcCCCchH---------------HHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            9999999654               24555567777777777777777665544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.60  E-value=6.8e-07  Score=94.69  Aligned_cols=127  Identities=13%  Similarity=0.066  Sum_probs=95.2

Q ss_pred             HhhhhHHHHhhcccch----hhhhc---hhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHH
Q 019871          156 QRVGPLLMKMQKRYGK----MEQTG---ELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQL  225 (334)
Q Consensus       156 ~R~G~V~lkLek~~~a----ie~~~---~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al  225 (334)
                      ...|.++..+++..++    ++...   ++... ...++.+.|.+....  .+.++..+.+.+++.|+..... ++|.++
T Consensus       250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l  328 (656)
T PRK15174        250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3467777777777653    33211   11111 122344445444333  4566788889999999977654 999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .+.|+|++|+..|+++++.+|++   ...++.+|.++..+|++++|+..|+++++..|++.
T Consensus       329 ~~~G~~~eA~~~l~~al~~~P~~---~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        329 RQVGQYTAASDEFVQLAREKGVT---SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            99999999999999999999997   45677789999999999999999999999999965

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.57  E-value=7.1e-07  Score=71.44  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ..+.+|..+++.|+|++|+..|++++..+|++.....+++++|.+|...|++++|+..|++++...|..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            457899999999999999999999999999874335789999999999999999999999999998874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.56  E-value=1.7e-07  Score=71.29  Aligned_cols=64  Identities=19%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSK----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeld----P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ..++|.+++++|+|++|+..|++++++.    +++++.+.+++|+|.||..+|++++|++++++|+++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3499999999999999999999999662    222233688999999999999999999999999986

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.55  E-value=1.4e-06  Score=75.84  Aligned_cols=82  Identities=18%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.+...+.+.++..|..... ..+|..+...|++++|+..|+++++.+|++   ..+++++|.+|...|++++|+..|+
T Consensus        47 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~  123 (234)
T TIGR02521        47 LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNYGTFLCQQGKYEQAMQQFE  123 (234)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcccHHHHHHHHH
Confidence            445666777778888876555 489999999999999999999999999998   5799999999999999999999999


Q ss_pred             HHHHcC
Q 019871          277 DALLAG  282 (334)
Q Consensus       277 kAIelg  282 (334)
                      ++++..
T Consensus       124 ~~~~~~  129 (234)
T TIGR02521       124 QAIEDP  129 (234)
T ss_pred             HHHhcc
Confidence            999864

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.54  E-value=8.7e-07  Score=64.74  Aligned_cols=82  Identities=29%  Similarity=0.378  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          200 IQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      .+...+.+.++..|.... .+.+|.++...+++++|+..|++++...|.+   ..+++.+|.++...|++++|+..++++
T Consensus        18 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          18 EALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN---AKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344556666666676543 4599999999999999999999999999998   468999999999999999999999999


Q ss_pred             HHcCCC
Q 019871          279 LLAGYE  284 (334)
Q Consensus       279 Ielgp~  284 (334)
                      ++.+|.
T Consensus        95 ~~~~~~  100 (100)
T cd00189          95 LELDPN  100 (100)
T ss_pred             HccCCC
Confidence            998873

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2.1e-06  Score=86.47  Aligned_cols=86  Identities=20%  Similarity=0.230  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++.+|..+++++|.|..+| -+|.+|.-++...=|+-.|++|+++.|++   +..|--+|.||.++++.++|+++|.+
T Consensus       381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD---sRlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND---SRLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            556799999999999997765 99999999999999999999999999999   68999999999999999999999999


Q ss_pred             HHHcCCCCHH
Q 019871          278 ALLAGYEDFK  287 (334)
Q Consensus       278 AIelgp~~~~  287 (334)
                      |+..+-.+-.
T Consensus       458 ai~~~dte~~  467 (559)
T KOG1155|consen  458 AILLGDTEGS  467 (559)
T ss_pred             HHhccccchH
Confidence            9999876433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.52  E-value=1.3e-06  Score=76.68  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=74.4

Q ss_pred             hhchhhhhh--hHHHHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 019871          187 ERNSGVISN--RVREIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (334)
Q Consensus       187 ~~n~g~~~~--~l~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~  260 (334)
                      +++.|....  +..+.++..|.+++++.++.    ...+++|.+++++|+|++|+..|++++.++|++   ..+++++|.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~  114 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---PSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHH
Confidence            344444442  33456667777777766543    334699999999999999999999999999998   679999999


Q ss_pred             HHHHCCC--------------hHHHHHHHHHHHHcCCCCH
Q 019871          261 CYSKLNQ--------------VKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       261 ay~~lG~--------------~eeAl~~lekAIelgp~~~  286 (334)
                      +|..+|+              +++|++.+++++.++|+++
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            9999988              5667777777777777754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=2.5e-07  Score=94.77  Aligned_cols=84  Identities=18%  Similarity=0.163  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++.+|..++..+|++...| .+|-.+....+++|||..|++|+++.|.+   ..++||+|.+|+.+|.|.||+++|-.
T Consensus       447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            445789999999999999888 88999999999999999999999999998   57999999999999999999999999


Q ss_pred             HHHcCCCC
Q 019871          278 ALLAGYED  285 (334)
Q Consensus       278 AIelgp~~  285 (334)
                      ||.+.+..
T Consensus       524 AL~mq~ks  531 (579)
T KOG1125|consen  524 ALSMQRKS  531 (579)
T ss_pred             HHHhhhcc
Confidence            99997763

>PLN02789 farnesyltranstransferase

Probab=98.51  E-value=2.2e-06  Score=83.62  Aligned_cols=112  Identities=12%  Similarity=-0.034  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh--HHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV--KAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~--eeAl~~  274 (334)
                      +.++..+.+.|+++|.+..++ ++|.++..+| ++++|+..++++++.+|++   ..+|++++.++.++|+.  ++++..
T Consensus        54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---yqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---YQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---hHHhHHHHHHHHHcCchhhHHHHHH
Confidence            456678889999999998776 9999999999 6899999999999999998   67999999999999974  789999


Q ss_pred             HHHHHHcCCCCHH-HHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          275 LEDALLAGYEDFK-RVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       275 lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ++++|+.+|.++. |..+--.   +.....|++.|+.+++.+.
T Consensus       131 ~~kal~~dpkNy~AW~~R~w~---l~~l~~~~eeL~~~~~~I~  170 (320)
T PLN02789        131 TRKILSLDAKNYHAWSHRQWV---LRTLGGWEDELEYCHQLLE  170 (320)
T ss_pred             HHHHHHhCcccHHHHHHHHHH---HHHhhhHHHHHHHHHHHHH
Confidence            9999999999887 4333322   3444678999999888874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.50  E-value=2.2e-06  Score=89.22  Aligned_cols=83  Identities=16%  Similarity=0.104  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      +...+.+.++..|++...+ .+|..+...|++++|+..|+++++.+|++   +.+++++|.+|..+|+ ++|+..+++++
T Consensus       755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~-~~A~~~~~~~~  830 (899)
T TIGR02917       755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---AVVLNNLAWLYLELKD-PRALEYAEKAL  830 (899)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence            4444555555555544433 56666666666666666666666666655   4455666666666665 55666666666


Q ss_pred             HcCCCCHH
Q 019871          280 LAGYEDFK  287 (334)
Q Consensus       280 elgp~~~~  287 (334)
                      ++.|++..
T Consensus       831 ~~~~~~~~  838 (899)
T TIGR02917       831 KLAPNIPA  838 (899)
T ss_pred             hhCCCCcH
Confidence            65555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.49  E-value=1.5e-06  Score=79.10  Aligned_cols=92  Identities=10%  Similarity=0.113  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-----
Q 019871          195 NRVREIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-----  265 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l-----  265 (334)
                      .+..+.+...+.+.+...|...    ..+.+|.++++.|++++|+..|+++++.+|+++....++|++|.||..+     
T Consensus        46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence            3344566778888888888653    3469999999999999999999999999999865456899999999987     


Q ss_pred             ---CChHHHHHHHHHHHHcCCCCH
Q 019871          266 ---NQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       266 ---G~~eeAl~~lekAIelgp~~~  286 (334)
                         |++++|++.|+++++.+|++.
T Consensus       126 ~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCh
Confidence               889999999999999999864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=9.7e-07  Score=91.67  Aligned_cols=111  Identities=16%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+++..+|++..+| -+|.+++++++|+.|.-.|++|++++|.+   ......+|..|.++|+.++|+..|+
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n---svi~~~~g~~~~~~k~~d~AL~~~~  547 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN---SVILCHIGRIQHQLKRKDKALQLYE  547 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc---hhHHhhhhHHHHHhhhhhHHHHHHH
Confidence            4667899999999999987665 99999999999999999999999999998   6889999999999999999999999


Q ss_pred             HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHH
Q 019871          277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDE  313 (334)
Q Consensus       277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e  313 (334)
                      +|+-++|.+.-...+-.  ..|....++++++..+++
T Consensus       548 ~A~~ld~kn~l~~~~~~--~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  548 KAIHLDPKNPLCKYHRA--SILFSLGRYVEALQELEE  582 (638)
T ss_pred             HHHhcCCCCchhHHHHH--HHHHhhcchHHHHHHHHH
Confidence            99999998765222211  123333455555544443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=9.3e-07  Score=89.52  Aligned_cols=114  Identities=16%  Similarity=0.236  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          202 MQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       202 ~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      .+.+.++..++|++.+.| ++|..++-+++|++|+..|+++++++|++   ..+|.++||+..++++++++...|+.|++
T Consensus       380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~---~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk  456 (606)
T KOG0547|consen  380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN---AYAYIQLCCALYRQHKIAESMKTFEEAKK  456 (606)
T ss_pred             HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777788899887765 99999999999999999999999999998   57999999999999999999999999999


Q ss_pred             cCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhH
Q 019871          281 AGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENA  320 (334)
Q Consensus       281 lgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~a  320 (334)
                      .=|+-.+-..-=  -+-|-+...|..+++.|++.+.+++-
T Consensus       457 kFP~~~Evy~~f--AeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  457 KFPNCPEVYNLF--AEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             hCCCCchHHHHH--HHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            877644411000  01233345899999999999877765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.46  E-value=5.2e-06  Score=80.48  Aligned_cols=130  Identities=15%  Similarity=0.007  Sum_probs=87.5

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHH------HHHHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERRE------QDLREGL  223 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~------~~~nlG~  223 (334)
                      +...+|.++...++...++.......+..  ...++...+.+..  +..+.++..+.+.++..|...      ....+|.
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            44566778888777777766322221100  1122222333322  223444555666665555431      1237888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .+++.|++++|+..|+++++.+|++   ..+++.+|.+|...|++++|++.++++++.+|.+.
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  248 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDPEYL  248 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence            8899999999999999999999887   56899999999999999999999999999888754

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.46  E-value=5.8e-06  Score=80.17  Aligned_cols=156  Identities=15%  Similarity=0.055  Sum_probs=103.4

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhcHHH-------HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHH-HHHHHH
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELSEKE-------IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQD-LREGLQ  224 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~ek~-------~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~-~nlG~a  224 (334)
                      ....+.++.+.+++.++++....+....       ....+.+.+...  .+..+.+...+.+.++..|..... +.+|..
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  223 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL  223 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence            3456667777777777776433222110       000111222221  233455667788888888876544 489999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHH
Q 019871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEF  304 (334)
Q Consensus       225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F  304 (334)
                      +.+.|++++|++.|+++++.+|.+.  ..++..++.+|..+|++++|+..++++++.+|+.... ..  -...+....++
T Consensus       224 ~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~--la~~~~~~g~~  298 (389)
T PRK11788        224 ALAQGDYAAAIEALERVEEQDPEYL--SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LA--LAQLLEEQEGP  298 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHHHChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HH--HHHHHHHhCCH
Confidence            9999999999999999999988762  3578899999999999999999999999999875332 11  11123344566


Q ss_pred             HHHHHHHHHhh
Q 019871          305 DVLLKRFDESF  315 (334)
Q Consensus       305 ~~lL~~~~e~~  315 (334)
                      ++++..+++.+
T Consensus       299 ~~A~~~l~~~l  309 (389)
T PRK11788        299 EAAQALLREQL  309 (389)
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.45  E-value=3.3e-06  Score=94.66  Aligned_cols=126  Identities=10%  Similarity=0.026  Sum_probs=93.8

Q ss_pred             hhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHH---------------HH
Q 019871          159 GPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQ---------------DL  219 (334)
Q Consensus       159 G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~---------------~~  219 (334)
                      |.+++..++..+++..........  ...++...|.+....  .+.++..|.+++++.|+...               .+
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            666677667776666432111111  123344455544333  45677888888888886421               13


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+|.++.+.|++++|+..|+++++++|++   ..+++++|.+|..+|++++|+++|++|++++|++..
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            66889999999999999999999999998   579999999999999999999999999999999765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.43  E-value=4e-06  Score=82.18  Aligned_cols=134  Identities=17%  Similarity=0.182  Sum_probs=102.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871          190 SGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (334)
Q Consensus       190 ~g~~~~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~  268 (334)
                      ....-.+...-++..|..+++.+|+...+ |.+|.+|+.+|+-..|+..++++|++.|++   ..+-.++|.++.++|++
T Consensus        46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF---~~ARiQRg~vllK~Gel  122 (504)
T KOG0624|consen   46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF---MAARIQRGVVLLKQGEL  122 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH---HHHHHHhchhhhhcccH
Confidence            33344444556789999999999998766 599999999999999999999999999999   67899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh---hchhHHHHHHHhhc
Q 019871          269 KAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF---INENAINAIKSLFG  329 (334)
Q Consensus       269 eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~---~~~~ai~~~k~~~~  329 (334)
                      ++|..+|+..|+.+|++-...-.-.-+..+.   +...+.......+   .-.|||..|.+|+.
T Consensus       123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~---e~~~l~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQ---EHWVLVQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHhHH---HHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence            9999999999999997543221112222232   3344444443333   77889998888764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.41  E-value=4e-06  Score=78.14  Aligned_cols=127  Identities=15%  Similarity=0.124  Sum_probs=98.6

Q ss_pred             HHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871          184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (334)
Q Consensus       184 ~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay  262 (334)
                      ++...+.++...+-...+..+..++++.+|+....+ -++..+.+.|+.+-|-+.|++|+.++|++   ...++|-|.-+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVLNNYG~FL  113 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchhhhhhHHH
Confidence            455666777777777788899999999999987776 89999999999999999999999999999   56999999999


Q ss_pred             HHCCChHHHHHHHHHHHHcCCCCHH--HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          263 SKLNQVKAGLSALEDALLAGYEDFK--RVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       263 ~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ..+|++++|...|++|++. |.++.  ....+..+-.++. ..|...-..|++++
T Consensus       114 C~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL  166 (250)
T COG3063         114 CAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRAL  166 (250)
T ss_pred             HhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHH
Confidence            9999999999999999986 65443  2333444444432 34444444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=3.9e-06  Score=77.13  Aligned_cols=96  Identities=22%  Similarity=0.336  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL  295 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~--e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl  295 (334)
                      +-..|+.+|..|+|++|...|.+||++-|.-.  +++..|.|+|.|+.+++.++.||.+|.+||+++|.+-+.+.+... 
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe-  176 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE-  176 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH-
Confidence            34679999999999999999999999999764  346889999999999999999999999999999997765543221 


Q ss_pred             HHHhcChHHHHHHHHHHHhh
Q 019871          296 ENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~  315 (334)
                       ..-+...|..+|+.|.+.+
T Consensus       177 -ayek~ek~eealeDyKki~  195 (271)
T KOG4234|consen  177 -AYEKMEKYEEALEDYKKIL  195 (271)
T ss_pred             -HHHhhhhHHHHHHHHHHHH
Confidence             2334467888888887766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.39  E-value=3e-06  Score=90.49  Aligned_cols=125  Identities=13%  Similarity=-0.046  Sum_probs=95.9

Q ss_pred             HhhhhHHHHhhcccchhhh---hchhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871          156 QRVGPLLMKMQKRYGKMEQ---TGELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTG  229 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~---~~~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g  229 (334)
                      -..+.+.+.+.+++++...   .+++..+. ..+..+.+.+....  .+.++..+.+.+...|+..... .+|.++.++|
T Consensus        90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g  168 (694)
T PRK15179         90 VLVARALEAAHRSDEGLAVWRGIHQRFPDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG  168 (694)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence            3466666777777776652   22232222 22333444444433  4667788889999999887765 9999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +|++|+.+|+++++.+|++   +.+|.++|.++...|+.++|...|++||+..-.
T Consensus       169 ~~~~A~~~y~~~~~~~p~~---~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        169 QSEQADACFERLSRQHPEF---ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             chHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            9999999999999989987   579999999999999999999999999998544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.38  E-value=8.3e-06  Score=74.18  Aligned_cols=86  Identities=17%  Similarity=0.127  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhccCHHH----HHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCCcchHH------------
Q 019871          199 EIQMQNYMKKKEQKERREQ----DLREGLQLYRT--------GKYEVAREKFESVLGSKPTPEESSVA------------  254 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~----~~nlG~al~~~--------g~yeeAl~~fekALeldP~~~e~~~a------------  254 (334)
                      +.++..|.+.++..|+...    .+.+|.++++.        |++++|++.|+++++.+|++.....+            
T Consensus        87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~  166 (235)
T TIGR03302        87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA  166 (235)
T ss_pred             HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence            4455666666666665432    34666666655        66677777777777766665321111            


Q ss_pred             --HHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          255 --SYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       255 --~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                        ++++|.+|...|++++|+..|+++++..|+
T Consensus       167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  198 (235)
T TIGR03302       167 GKELYVARFYLKRGAYVAAINRFETVVENYPD  198 (235)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence              235666677777777777777777766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.38  E-value=3.4e-06  Score=80.25  Aligned_cols=88  Identities=13%  Similarity=0.114  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      ..++..|.+.+..+|+.    ...+.+|.+++..|+|++|+..|+++++..|+++..+.+++.+|.+|..+|++++|+..
T Consensus       160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~  239 (263)
T PRK10803        160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV  239 (263)
T ss_pred             HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence            44455666667777765    34568888888888888888888888888888766677888888888888888888888


Q ss_pred             HHHHHHcCCCCH
Q 019871          275 LEDALLAGYEDF  286 (334)
Q Consensus       275 lekAIelgp~~~  286 (334)
                      |++.++..|+..
T Consensus       240 ~~~vi~~yP~s~  251 (263)
T PRK10803        240 YQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHCcCCH
Confidence            888888887743

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.36  E-value=1.1e-05  Score=84.13  Aligned_cols=87  Identities=14%  Similarity=0.167  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      .+.++..|.+.++..|+....+++|.++.+.|++++|+..++++++.+|++   ..+++++|.+|..+|++++|+..|++
T Consensus       719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~  795 (899)
T TIGR02917       719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRT  795 (899)
T ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            455677788888888888777799999999999999999999999999998   67999999999999999999999999


Q ss_pred             HHHcCCCCHH
Q 019871          278 ALLAGYEDFK  287 (334)
Q Consensus       278 AIelgp~~~~  287 (334)
                      +++.+|++..
T Consensus       796 ~~~~~p~~~~  805 (899)
T TIGR02917       796 VVKKAPDNAV  805 (899)
T ss_pred             HHHhCCCCHH
Confidence            9999998654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.35  E-value=6.4e-06  Score=88.70  Aligned_cols=86  Identities=16%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.+...|.+.++++|+.... +.+|.++.+.|++++|+..++++++.+|++   .. |+.+|.++...|++++|+..|++
T Consensus        66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~  141 (765)
T PRK10049         66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQ  141 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence            45678888999999987665 499999999999999999999999999998   56 99999999999999999999999


Q ss_pred             HHHcCCCCHHH
Q 019871          278 ALLAGYEDFKR  288 (334)
Q Consensus       278 AIelgp~~~~~  288 (334)
                      ++++.|++...
T Consensus       142 al~~~P~~~~~  152 (765)
T PRK10049        142 ALPRAPQTQQY  152 (765)
T ss_pred             HHHhCCCCHHH
Confidence            99999998763

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.32  E-value=3.1e-06  Score=76.23  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC----------CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC
Q 019871          197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTG----------KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g----------~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l  265 (334)
                      +-|.+.+.|......+|.+.+.+ +.|.+|.++.          .+++|+..|++||.++|+.   ..++|++|.+|+.+
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~---hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK---HDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHH
Confidence            34666778888888999998875 8898887764          4688999999999999998   67999999999987


Q ss_pred             CC-----------hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871          266 NQ-----------VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL  308 (334)
Q Consensus       266 G~-----------~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL  308 (334)
                      +.           |++|..+|++|.+.+|++-- +++  .|+.-++.|+.+.=|
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~k--sLe~~~kap~lh~e~  133 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRK--SLEMAAKAPELHMEI  133 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHH--HHHHHHTHHHHHHHH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHH--HHHHHHhhHHHHHHH
Confidence            75           88899999999999998543 332  233334556654433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.30  E-value=8.9e-06  Score=70.95  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH-------HCC
Q 019871          198 REIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS-------KLN  266 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~-------~lG  266 (334)
                      .+.+...|.+++.+.++.    ...+++|.++...|++++|+..|++++.++|.+   ..+++++|.+|.       .+|
T Consensus        51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~la~i~~~~~~~~~~~g  127 (168)
T CHL00033         51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNNMAVICHYRGEQAIEQG  127 (168)
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHhhHHHHHcc
Confidence            455667777777665542    234699999999999999999999999999998   568999999999       888


Q ss_pred             ChHHHHHHHH-------HHHHcCCCCH
Q 019871          267 QVKAGLSALE-------DALLAGYEDF  286 (334)
Q Consensus       267 ~~eeAl~~le-------kAIelgp~~~  286 (334)
                      ++++|+.+++       +++..+|.+.
T Consensus       128 ~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        128 DSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            8775555555       4555555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=4e-06  Score=86.13  Aligned_cols=108  Identities=18%  Similarity=0.212  Sum_probs=87.6

Q ss_pred             HHHHHHHhhcc--CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          203 QNYMKKKEQKE--RREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       203 ~~y~~~iel~~--~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      .-|.++....|  .+++. .-+|..|+-.|+|+.|++||+.||..+|++   ...|+.+|..++.-.+.++||.+|.+|+
T Consensus       415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  415 ELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---YLLWNRLGATLANGNRSEEAISAYNRAL  491 (579)
T ss_pred             HHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---HHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence            34566665555  34444 499999999999999999999999999999   6899999999999999999999999999


Q ss_pred             HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ++.|.+. +.+.+-++..+ ..+.|+++++-|=+.+
T Consensus       492 qLqP~yV-R~RyNlgIS~m-NlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  492 QLQPGYV-RVRYNLGISCM-NLGAYKEAVKHLLEAL  525 (579)
T ss_pred             hcCCCee-eeehhhhhhhh-hhhhHHHHHHHHHHHH
Confidence            9999954 45666666544 4577888877665554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.27  E-value=1.8e-06  Score=84.50  Aligned_cols=67  Identities=22%  Similarity=0.244  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .-.+|+.||++|+|+|||+||.+++.++|.+   +..|-|+|.+|.++.+|..|..+|+.||.++-.+.+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K  166 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK  166 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCC---ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence            3489999999999999999999999999988   578999999999999999999999999999876544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.24  E-value=4.8e-06  Score=78.21  Aligned_cols=116  Identities=21%  Similarity=0.212  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+..+.++..|.++++++|++.... .++..+...|+++++...+....+..|+++   ..|..+|.+|..+|++++|+.
T Consensus       159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~---~~~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP---DLWDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC---CHCHHHHHHHHHHT-HHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH---HHHHHHHHHhccccccccccc
Confidence            3445678899999999999987765 899999999999998888888887777773   589999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          274 ALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       274 ~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +|+++++.+|.|+.+...=.+  .+...++++++++-+.+.+
T Consensus       236 ~~~~~~~~~p~d~~~~~~~a~--~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  236 YLEKALKLNPDDPLWLLAYAD--ALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHH--HHT----------------
T ss_pred             ccccccccccccccccccccc--ccccccccccccccccccc
Confidence            999999999998886554322  3555566666666554443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.22  E-value=1.8e-05  Score=88.84  Aligned_cols=114  Identities=10%  Similarity=0.058  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+.+++.|++...+ ++|.++...|++++|++.|+++++.+|++   ..++..+|.++..+|++++|++.|+
T Consensus       619 ~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~  695 (1157)
T PRK11447        619 YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS---LNTQRRVALAWAALGDTAAAQRTFN  695 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            4666778888888888876654 88888888888888888888888888887   5678888888888888888888888


Q ss_pred             HHHHcCCCCHH-----HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          277 DALLAGYEDFK-----RVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       277 kAIelgp~~~~-----~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +++...|++..     .+..+.. ...+...+++++++.|++.+
T Consensus       696 ~al~~~~~~~~~~~~a~~~~~~a-~~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        696 RLIPQAKSQPPSMESALVLRDAA-RFEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             HHhhhCccCCcchhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence            88887765432     1111111 11234456667777666664

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=9.3e-06  Score=80.71  Aligned_cols=95  Identities=23%  Similarity=0.397  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----C--------cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP----E--------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~----~--------e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ....|+.+|+.|+|..|+..|++|+..=+..    .        ..-..|.|+|.||.+++++.+|+.+|+++|+++|.|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            3488999999999999999999998653321    1        123689999999999999999999999999999999


Q ss_pred             HH-HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          286 FK-RVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       286 ~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .+ ..++...+.   ...+|+.+...|++.+
T Consensus       291 ~KALyRrG~A~l---~~~e~~~A~~df~ka~  318 (397)
T KOG0543|consen  291 VKALYRRGQALL---ALGEYDLARDDFQKAL  318 (397)
T ss_pred             hhHHHHHHHHHH---hhccHHHHHHHHHHHH
Confidence            98 445554433   3457888888887777

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.19  E-value=6.5e-06  Score=86.56  Aligned_cols=118  Identities=18%  Similarity=0.224  Sum_probs=91.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871          193 ISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG  271 (334)
Q Consensus       193 ~~~~l~e~q~~~y~~~iel~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA  271 (334)
                      ++..-.+..+......++++|-- ..+|.+|.+..+.++++.|.++|.+++.++|++   ..+|+|++++|.++++-.+|
T Consensus       496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~---~eaWnNls~ayi~~~~k~ra  572 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN---AEAWNNLSTAYIRLKKKKRA  572 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc---hhhhhhhhHHHHHHhhhHHH
Confidence            33344566677888888888864 556799999999999999999999999999999   57999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          272 LSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       272 l~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ...+.+|++.+..++... .+=++... +-..|.++++.|....
T Consensus       573 ~~~l~EAlKcn~~~w~iW-ENymlvsv-dvge~eda~~A~~rll  614 (777)
T KOG1128|consen  573 FRKLKEALKCNYQHWQIW-ENYMLVSV-DVGEFEDAIKAYHRLL  614 (777)
T ss_pred             HHHHHHHhhcCCCCCeee-echhhhhh-hcccHHHHHHHHHHHH
Confidence            999999999997765522 22222222 2345666666555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.19  E-value=2e-06  Score=66.70  Aligned_cols=59  Identities=27%  Similarity=0.410  Sum_probs=49.6

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..|+|++|+..|+++++.+|.+. ....|+++|.||.++|++++|+..+++ ++.++.+..
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~   59 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD   59 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH
Confidence            36899999999999999999642 257899999999999999999999999 777776433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.14  E-value=3.5e-05  Score=83.06  Aligned_cols=111  Identities=5%  Similarity=0.033  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..|.+.+...|..+. ...+|.++...|++++|+..|+++++++|++   +.+++++|.++...|++++|+..+++
T Consensus        32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~g~~~eA~~~l~~  108 (765)
T PRK10049         32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLILTLADAGQYDEALVKAKQ  108 (765)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4445667777766676665 4599999999999999999999999999998   57899999999999999999999999


Q ss_pred             HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +++..|++.. ... -.. .+....++.+++..|++.+
T Consensus       109 ~l~~~P~~~~-~~~-la~-~l~~~g~~~~Al~~l~~al  143 (765)
T PRK10049        109 LVSGAPDKAN-LLA-LAY-VYKRAGRHWDELRAMTQAL  143 (765)
T ss_pred             HHHhCCCCHH-HHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence            9999999876 221 111 2333456666666666555

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.13  E-value=2.4e-05  Score=73.40  Aligned_cols=88  Identities=9%  Similarity=0.085  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhhccCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC------
Q 019871          198 REIQMQNYMKKKEQKERREQD----LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ------  267 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~----~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~------  267 (334)
                      ...+...|.+.+...|.....    +.+|.++++.++|++|+..|++.+++.|+++....++|.+|.|+..++.      
T Consensus        48 y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~  127 (243)
T PRK10866         48 WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGF  127 (243)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhc
Confidence            345566677777777765433    5888888888888888888888888888887777888888888655541      


Q ss_pred             ------------hHHHHHHHHHHHHcCCCC
Q 019871          268 ------------VKAGLSALEDALLAGYED  285 (334)
Q Consensus       268 ------------~eeAl~~lekAIelgp~~  285 (334)
                                  ..+|+..|++-|+.-|+.
T Consensus       128 ~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        128 FGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             cCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence                        256778888888887763

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.12  E-value=3.4e-05  Score=73.38  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=63.8

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          216 EQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       216 ~~~~nlG~al-~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      ...|+.+..+ ++.|+|++|+..|++.++..|++...+.++|++|.+|...|++++|+..|+++++..|+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~  214 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP  214 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            4567888887 6789999999999999999999865568999999999999999999999999999988743

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.08  E-value=4.5e-05  Score=83.24  Aligned_cols=190  Identities=8%  Similarity=0.085  Sum_probs=117.9

Q ss_pred             eccccccccccccchhh---HHHHHHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhHHHHH--------
Q 019871          133 TSAVFGTEIWPAAEYGR---TMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQ--------  201 (334)
Q Consensus       133 ~sa~fg~~~w~~~~~~~---v~sai~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l~e~q--------  201 (334)
                      ...+|..|.|.-++.+.   --.-+..++..++...+++..+++.+.+..+.   .+..-...+..+....+        
T Consensus         9 ~~~~~~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~   85 (906)
T PRK14720          9 LTSLLNEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSN   85 (906)
T ss_pred             HHHHhhhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhh
Confidence            34569999998555552   22235566666777777777777643211111   11111112222221111        


Q ss_pred             ----------------HHHHHHHHhhccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871          202 ----------------MQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       202 ----------------~~~y~~~iel~~~-~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~  264 (334)
                                      ...|.+.+...+. ....+.+|.+|-++|++++|...|+++|+++|++   +.+..|+|..|+.
T Consensus        86 lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---~~aLNn~AY~~ae  162 (906)
T PRK14720         86 LLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---PEIVKKLATSYEE  162 (906)
T ss_pred             hhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHH
Confidence                            1222222222222 2445699999999999999999999999999999   6899999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCCC-----HH-----HHhcChh---h-----HHHhcCh-------HHHHHHHHHHHhhhchh
Q 019871          265 LNQVKAGLSALEDALLAGYED-----FK-----RVRTDPD---L-----ENLRASE-------EFDVLLKRFDESFINEN  319 (334)
Q Consensus       265 lG~~eeAl~~lekAIelgp~~-----~~-----~i~~Dpd---l-----~~Lr~dp-------~F~~lL~~~~e~~~~~~  319 (334)
                      . +.++|++.+.+|++...+.     ..     .+..+|+   +     ..+..+-       -+..+.+.|.+.-.++.
T Consensus       163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~  241 (906)
T PRK14720        163 E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE  241 (906)
T ss_pred             h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence            9 9999999999998764311     11     1122332   1     0111111       23444467777778889


Q ss_pred             HHHHHHHhhc
Q 019871          320 AINAIKSLFG  329 (334)
Q Consensus       320 ai~~~k~~~~  329 (334)
                      +|..+|.++.
T Consensus       242 ~i~iLK~iL~  251 (906)
T PRK14720        242 VIYILKKILE  251 (906)
T ss_pred             HHHHHHHHHh
Confidence            9999998876

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=5.6e-06  Score=53.46  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+|+++|.+|..+|++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57888888888888888888888888888886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.06  E-value=4.5e-05  Score=66.35  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ..+.++.|...++.|+|.+|++.|+.....-|..+....+...++.+|.+.+++++|+..+++-|+++|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4556677777777777777777777777777766555567777777777777777777777777777775

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.03  E-value=4.1e-06  Score=55.23  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       237 ~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      +|++||+++|++   +.+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n---~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNN---AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCC---HHHHHHHHHHHHHCcCHHhhcC
Confidence            489999999999   6899999999999999999973

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.03  E-value=1.4e-05  Score=69.12  Aligned_cols=60  Identities=23%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      ..|.++.+.|+.+.|++.|.++|.+-|+.   +.+|+|+|-+|..+|+.++|++++++|+++.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~r---aSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPER---ASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccc---hHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            56777788888888888888888888877   5678888888888888888888888888774

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.01  E-value=0.00015  Score=68.05  Aligned_cols=73  Identities=12%  Similarity=0.103  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .....+..|..+++.|+|++|+..|++++...|..+....+.+++|.+|.+++++++|+..+++.|+..|++.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            4556779999999999999999999999999999865556789999999999999999999999999999754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.00  E-value=9e-05  Score=62.63  Aligned_cols=81  Identities=21%  Similarity=0.187  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      +.++..|.++++......    ..+.+|..+..+|++++|+..+++++...|+++-......-.|.++..+|+.++|+.+
T Consensus        18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~   97 (120)
T PF12688_consen   18 EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEW   97 (120)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            444555555554332221    1235555555555555555555555555555221134444455555555555555555


Q ss_pred             HHHHH
Q 019871          275 LEDAL  279 (334)
Q Consensus       275 lekAI  279 (334)
                      +-.++
T Consensus        98 ~l~~l  102 (120)
T PF12688_consen   98 LLEAL  102 (120)
T ss_pred             HHHHH
Confidence            55554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=8.8e-06  Score=76.33  Aligned_cols=65  Identities=20%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..|+.++...+|..|+.+|.+||.++|..   +..|-|+|.||.++.+++.+..++.+|+++.|+..+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~---~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk   79 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTV---ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK   79 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCc---chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence            44555555555555555555555555554   234555555555555555555555555555555333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.99  E-value=6e-05  Score=71.16  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      +.....++..+.|++.+.+ .+|.+|.+.|++++|-..|.+++++.|..   +.+..|+|..|...|+++.|...+.+|.
T Consensus       119 A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---p~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         119 AVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---PSIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             HHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---chhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444555555554444 55555555555555555555555555555   3455555555555555555555555555


Q ss_pred             HcCCC
Q 019871          280 LAGYE  284 (334)
Q Consensus       280 elgp~  284 (334)
                      ...+.
T Consensus       196 l~~~a  200 (257)
T COG5010         196 LSPAA  200 (257)
T ss_pred             hCCCC
Confidence            44443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.96  E-value=9.1e-05  Score=69.99  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=71.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR  299 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr  299 (334)
                      -.|..+++.|+|.+|+..+.++..++|++   +.+|.-+|.+|.++|++++|-..|.+|+++.|.+...+-+--.+--|+
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence            59999999999999999999999999999   679999999999999999999999999999998665443333333344


Q ss_pred             cChHHHHHHHHHHH
Q 019871          300 ASEEFDVLLKRFDE  313 (334)
Q Consensus       300 ~dp~F~~lL~~~~e  313 (334)
                      .  +++.+..-+.+
T Consensus       182 g--d~~~A~~lll~  193 (257)
T COG5010         182 G--DLEDAETLLLP  193 (257)
T ss_pred             C--CHHHHHHHHHH
Confidence            3  44444443333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.95  E-value=3e-05  Score=76.15  Aligned_cols=93  Identities=20%  Similarity=0.281  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhh
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDL  295 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl  295 (334)
                      ..+.+|..++..|+|.+|+..|..|++.||++   ..++|.+|.+|..+|+-..|+.+|.+.|++-|+... ++.+.-  
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~--  114 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV--  114 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch--
Confidence            35699999999999999999999999999998   789999999999999999999999999999999555 444332  


Q ss_pred             HHHhcChHHHHHHHHHHHhh
Q 019871          296 ENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~  315 (334)
                       .|.+.++++++...|+..+
T Consensus       115 -vllK~Gele~A~~DF~~vl  133 (504)
T KOG0624|consen  115 -VLLKQGELEQAEADFDQVL  133 (504)
T ss_pred             -hhhhcccHHHHHHHHHHHH
Confidence             2445567777777776554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.95  E-value=0.00014  Score=62.07  Aligned_cols=60  Identities=25%  Similarity=0.410  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      .+.+|..++..|+|++|+..|+++++..|+......+.+.+|.++..+|++++|+..|+.
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            358999999999999999999999998776543457899999999999999999999976

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=2e-05  Score=77.00  Aligned_cols=131  Identities=11%  Similarity=0.144  Sum_probs=102.4

Q ss_pred             hhhHHHHhhcccchhhhhchh-cHHHH-HH--HhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHH
Q 019871          158 VGPLLMKMQKRYGKMEQTGEL-SEKEI-IR--AERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYE  232 (334)
Q Consensus       158 ~G~V~lkLek~~~aie~~~~l-~ek~~-~~--a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ye  232 (334)
                      +.-|+..|+.+.++++.++.. ..+.+ ++  +-...++.+.+.-|+++.-|.+-++.-.+..+.| |+|++++-.++|+
T Consensus       296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence            344555666667766644311 11111 11  2335677788888999999999988888887877 9999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       233 eAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      -++.+|++|+..--+..+.++.|||++.+....|++.-|-.+|+-|+-.++++.+.
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea  431 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA  431 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence            99999999998766555568999999999999999999999999999999986553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.6e-05  Score=80.19  Aligned_cols=64  Identities=17%  Similarity=0.253  Sum_probs=62.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      .|+|-++.++++|++||..|+++|.+.|.+   +.+|-.+|.+|..+|+++.|+++|.+||.+.|++
T Consensus       459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  459 NNLGHAYRKLNKYEEAIDYYQKALLLSPKD---ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            499999999999999999999999999999   6799999999999999999999999999999997

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.91  E-value=4.5e-05  Score=56.42  Aligned_cols=52  Identities=27%  Similarity=0.359  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 019871          195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKP  246 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP  246 (334)
                      .+-.+.++..|.++++++|.....+ ++|.+++++| +|++|++.|+++++++|
T Consensus        16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4445667889999999999987765 9999999999 79999999999999998

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.91  E-value=2.4e-05  Score=50.05  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      .+|+++|.+|..+|++++|+.+|++|++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            467778888888888888888888888877764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.89  E-value=0.00015  Score=65.80  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      +...+..|..+++.|+|.+|+..|++.+...|..+....+++.+|.+|.+.|++++|+..+++-|+..|..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~   75 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS   75 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            45678999999999999999999999999999987778999999999999999999999999999999974

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.00016  Score=74.53  Aligned_cols=116  Identities=20%  Similarity=0.278  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---------------------------
Q 019871          198 REIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPE---------------------------  249 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~---------------------------  249 (334)
                      .+++|.+|..+..+-|.-.. .+.+|..+.+++.++-|-..|.+|+.+.|.++                           
T Consensus       362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            46677788877776665433 34666666666666666666666666666653                           


Q ss_pred             --------c---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          250 --------E---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       250 --------e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                              +   -...+.|+|-+|.+++++++||.++++||.+.|.+....-.-.-+-.+  .+.++.+++-|.|++
T Consensus       442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l--lgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL--LGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH--hcChHHHHHHHHHHH
Confidence                    0   013478999999999999999999999999999887744332222223  246788888888877

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=4.8e-05  Score=76.01  Aligned_cols=88  Identities=15%  Similarity=0.100  Sum_probs=76.6

Q ss_pred             hhhHHHHHHHHHHHHHhhccCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871          194 SNRVREIQMQNYMKKKEQKERREQ-----DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (334)
Q Consensus       194 ~~~l~e~q~~~y~~~iel~~~~~~-----~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~  268 (334)
                      ..+-...+...|-++|.++|..-.     .+|++.+..++|+..+||..++.|+++||..   ..++..+|.||..+++|
T Consensus       261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy---ikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY---IKALLRRANCHLALEKW  337 (486)
T ss_pred             hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH---HHHHHHHHHHHHHHHHH
Confidence            344445567899999999987422     2499999999999999999999999999998   68999999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 019871          269 KAGLSALEDALLAGYE  284 (334)
Q Consensus       269 eeAl~~lekAIelgp~  284 (334)
                      ++|+++|++|++..-+
T Consensus       338 e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  338 EEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999999988654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.87  E-value=0.00011  Score=63.89  Aligned_cols=67  Identities=18%  Similarity=0.299  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC---------------hHHHHHHHHHHHHcC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ---------------VKAGLSALEDALLAG  282 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~---------------~eeAl~~lekAIelg  282 (334)
                      .+.+|.++|+.++|++|+..+++-|+++|+++....++|-+|.++..+..               ..+|+..|++.|..-
T Consensus        50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            46999999999999999999999999999998778899999999999876               666666666666666


Q ss_pred             CC
Q 019871          283 YE  284 (334)
Q Consensus       283 p~  284 (334)
                      |+
T Consensus       130 P~  131 (142)
T PF13512_consen  130 PN  131 (142)
T ss_pred             cC
Confidence            65

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.83  E-value=0.00017  Score=67.29  Aligned_cols=97  Identities=20%  Similarity=0.193  Sum_probs=86.4

Q ss_pred             hchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871          188 RNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       188 ~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~  264 (334)
                      +-.|+.+  .+++..+..++.+++.+.|.-++.| .+|.-+...|+|+.|.+.|+..+++||.+.   .++-|+|.++.-
T Consensus        69 fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Ya~lNRgi~~YY  145 (297)
T COG4785          69 FERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYY  145 (297)
T ss_pred             HHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---HHHhccceeeee
Confidence            3456665  4667888889999999999988888 789999999999999999999999999984   699999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHH
Q 019871          265 LNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       265 lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      -|+++-|.+++.+--..+|.|+-
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999998764

>PRK11906 transcriptional regulator; Provisional

Probab=97.83  E-value=0.00012  Score=74.19  Aligned_cols=83  Identities=13%  Similarity=0.021  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          202 MQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       202 ~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      ...-.+++++++.++.+. .+|.++.-.++++.|+..|++|+.++|++   +.+||..|......|+.++|++++++|++
T Consensus       324 ~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~---A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        324 LELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI---ASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            345566788899887775 99999999999999999999999999998   78999999999999999999999999999


Q ss_pred             cCCCCHH
Q 019871          281 AGYEDFK  287 (334)
Q Consensus       281 lgp~~~~  287 (334)
                      ++|.-..
T Consensus       401 LsP~~~~  407 (458)
T PRK11906        401 LEPRRRK  407 (458)
T ss_pred             cCchhhH
Confidence            9997443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00013  Score=71.21  Aligned_cols=93  Identities=22%  Similarity=0.227  Sum_probs=75.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLEN  297 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~-e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~  297 (334)
                      ..|+.+|+.++|.+|+.+|.++|+.+-.++ ..+..|.|+|.|...+|+|-.||.+|.+|+.++|.+.+ .++.-..   
T Consensus        86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc---  162 (390)
T KOG0551|consen   86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC---  162 (390)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH---
Confidence            779999999999999999999997754443 24688999999999999999999999999999999888 4555444   


Q ss_pred             HhcChHHHHHHHHHHHhh
Q 019871          298 LRASEEFDVLLKRFDESF  315 (334)
Q Consensus       298 Lr~dp~F~~lL~~~~e~~  315 (334)
                      +-...+|..+++-+++.+
T Consensus       163 ~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            334457888887777766

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.80  E-value=0.00015  Score=69.62  Aligned_cols=62  Identities=21%  Similarity=0.158  Sum_probs=45.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+|.++...|++++|+..|+++++++|++   ..+++.+|.+|...|++++|+.+++++++..|.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            66777777777777777777777777776   456777777777777777777777777776653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=97.80  E-value=1.1e-05  Score=62.32  Aligned_cols=41  Identities=32%  Similarity=0.853  Sum_probs=38.0

Q ss_pred             CCcceeEeecCCC---ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~g---~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|+|+.+..+.+.   ++||..|.|+|.|+++| +++||.|+.+-
T Consensus        10 ~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~IN   53 (81)
T PF00595_consen   10 GPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEIN   53 (81)
T ss_dssp             SBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEET
T ss_pred             CCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeC
Confidence            5999999888775   99999999999999999 99999999984

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.78  E-value=0.00017  Score=69.16  Aligned_cols=86  Identities=10%  Similarity=0.036  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHCCChHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e-~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      .+.+...+.+.+++.|++... ..+|.++++.|++++|+..++++++..|..+. ....|+.+|.++..+|++++|+..|
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            456678888999999998655 49999999999999999999999999875422 1346779999999999999999999


Q ss_pred             HHHHHcCC
Q 019871          276 EDALLAGY  283 (334)
Q Consensus       276 ekAIelgp  283 (334)
                      ++++...|
T Consensus       210 ~~~~~~~~  217 (355)
T cd05804         210 DTHIAPSA  217 (355)
T ss_pred             HHHhcccc
Confidence            99987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.77  E-value=9.6e-05  Score=74.13  Aligned_cols=62  Identities=16%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~---~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ++|+.||-+|+|++||...+.=|++..++.++   ..++.|+|.||.-+|+++.|+++|++++.+
T Consensus       200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            89999999999999999999999887776432   378999999999999999999999987554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.76  E-value=0.0006  Score=57.63  Aligned_cols=108  Identities=19%  Similarity=0.082  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcChh
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTDPD  294 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpd  294 (334)
                      ..|++|.++-.+|+.++|+..|+++++..+..+....++.++|.+|..+|++++|+..|++++...|++.-  .+..--.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            45789999999999999999999999987766545679999999999999999999999999998776211  1111111


Q ss_pred             hHHHhcChHHHHHHHHHHHhh-----hchhHHHHHH
Q 019871          295 LENLRASEEFDVLLKRFDESF-----INENAINAIK  325 (334)
Q Consensus       295 l~~Lr~dp~F~~lL~~~~e~~-----~~~~ai~~~k  325 (334)
                      + .|....+.++.++-+-..+     .+..||.++.
T Consensus        83 l-~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   83 L-ALYNLGRPKEALEWLLEALAETLPRYRRAIRFYA  117 (120)
T ss_pred             H-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 2344455555554443333     4555665553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.76  E-value=0.00062  Score=69.25  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=67.5

Q ss_pred             hccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          211 QKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       211 l~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      ..|++.... ..|..+.+.+++++|++.+++++.++|..   +..++|+|.+|.+.|++++|+..+++.+..+|+|..+
T Consensus       335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~  410 (484)
T COG4783         335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG  410 (484)
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence            446665555 88899999999999999999999999997   6899999999999999999999999999999998773

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.75  E-value=0.00027  Score=67.21  Aligned_cols=89  Identities=16%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      ..+.+.+.+-+..+|+.    ...|.+|.++|.+|+|++|...|..++...|+.+-.+.+++.+|.|...+|+.++|...
T Consensus       158 ~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~at  237 (262)
T COG1729         158 AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACAT  237 (262)
T ss_pred             HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHH
Confidence            34445555555566663    34568888888888888888888888888888877678888888888888888888888


Q ss_pred             HHHHHHcCCCCHH
Q 019871          275 LEDALLAGYEDFK  287 (334)
Q Consensus       275 lekAIelgp~~~~  287 (334)
                      |++.++-.|....
T Consensus       238 l~qv~k~YP~t~a  250 (262)
T COG1729         238 LQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHCCCCHH
Confidence            8888888887543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.74  E-value=0.00018  Score=63.96  Aligned_cols=68  Identities=4%  Similarity=-0.069  Sum_probs=55.1

Q ss_pred             hhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          210 EQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       210 el~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      ..++.+... +.+|.++..+++|++|+..|..|..++++++   ...|..|-||..+|+.+.|..+|+.|++
T Consensus        65 ~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         65 IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            344554443 4888888888999999999999998888874   5788889999999999999999988888

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.74  E-value=4.5e-05  Score=74.95  Aligned_cols=96  Identities=10%  Similarity=0.051  Sum_probs=82.0

Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC
Q 019871          189 NSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ  267 (334)
Q Consensus       189 n~g~~~~~l~e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~  267 (334)
                      ++.+...+-.+.++-+|.+.+...|..+. ..|++.+|+++++|..|...|+.|+.+|..+   ..+|..++.+-..+|+
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y---~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY---VKAYSRRMQARESLGN  180 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---HHHHHHHHHHHHHHhh
Confidence            33344445556677888888888885444 4599999999999999999999999999887   6899999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCHH
Q 019871          268 VKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       268 ~eeAl~~lekAIelgp~~~~  287 (334)
                      ..||-++|+.+|++.|++.+
T Consensus       181 ~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHH
Confidence            99999999999999998665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.72  E-value=0.00013  Score=53.51  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             hhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          194 SNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       194 ~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      ..+-.+.++..|.+.++..|++...+ .+|.+++++|++++|+..|+++++++|++
T Consensus         9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            34445667788999999999887765 99999999999999999999999999986

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.72  E-value=0.00028  Score=73.23  Aligned_cols=65  Identities=11%  Similarity=0.012  Sum_probs=60.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      -+|..+...|++++|...|++|++++|.    ..+|+.+|.+|...|+.++|++.|++|+.++|.+..+
T Consensus       425 ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        425 ILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            6788888899999999999999999995    4799999999999999999999999999999997653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.69  E-value=3.3e-05  Score=78.25  Aligned_cols=88  Identities=17%  Similarity=0.097  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      ....++.-|.++|+++|+.+..+ +++.++.+.++|..|+..+.+||+++|..   ..+|+-+|.+++.++++.+|+.+|
T Consensus        19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~---~K~Y~rrg~a~m~l~~~~~A~~~l   95 (476)
T KOG0376|consen   19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY---IKAYVRRGTAVMALGEFKKALLDL   95 (476)
T ss_pred             hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh---hheeeeccHHHHhHHHHHHHHHHH
Confidence            34556778999999999887777 88899999999999999999999999997   579999999999999999999999


Q ss_pred             HHHHHcCCCCHH
Q 019871          276 EDALLAGYEDFK  287 (334)
Q Consensus       276 ekAIelgp~~~~  287 (334)
                      ++...+.|++..
T Consensus        96 ~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   96 EKVKKLAPNDPD  107 (476)
T ss_pred             HHhhhcCcCcHH
Confidence            999999998665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.68  E-value=0.00024  Score=75.39  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=75.6

Q ss_pred             hhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871          195 NRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVARE--KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG  271 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~--~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA  271 (334)
                      .+..+.+++.|..++.++|.+... ..+|.++.+.|+-.-|.+  ....|+++||.+   +.+||++|+++.++|+.++|
T Consensus       697 ~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n---~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  697 KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN---HEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccchHHH
Confidence            344577788999999999987555 489999999998888888  889999999998   56999999999999999999


Q ss_pred             HHHHHHHHHcCCCCH
Q 019871          272 LSALEDALLAGYEDF  286 (334)
Q Consensus       272 l~~lekAIelgp~~~  286 (334)
                      .++|.-|+++.+.++
T Consensus       774 aecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  774 AECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHhhccCCC
Confidence            999999999987754

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=6.5e-05  Score=48.39  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      ..+++|.+++.+|+|++|+.+|++||+++|++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            45699999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=97.67  E-value=0.00031  Score=62.54  Aligned_cols=68  Identities=12%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..+..|..+|+.|+|++|...|.-....+|.+   +.-|..+|.|+-.++++++|+..|..|..++++|+.
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            34688999999999999999999999999998   578999999999999999999999999999887664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.66  E-value=0.001  Score=71.73  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=82.5

Q ss_pred             HHhhchhhhhhhHHHH--HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871          185 RAERNSGVISNRVREI--QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (334)
Q Consensus       185 ~a~~n~g~~~~~l~e~--q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a  261 (334)
                      .||...|.++.....+  ..+....++-++|++.+.| .++....++|.+.+|.-||.+||..+|.+   ....|+++..
T Consensus       174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n---~~~~~ers~L  250 (895)
T KOG2076|consen  174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN---WELIYERSSL  250 (895)
T ss_pred             hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc---hHHHHHHHHH
Confidence            4677777777666433  3556666777899987665 99999999999999999999999999998   6789999999


Q ss_pred             HHHCCChHHHHHHHHHHHHcCC
Q 019871          262 YSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       262 y~~lG~~eeAl~~lekAIelgp  283 (334)
                      |-+.|+...|+..+.+.+.+.|
T Consensus       251 ~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  251 YQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHhChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999998

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.63  E-value=0.00012  Score=46.71  Aligned_cols=32  Identities=34%  Similarity=0.426  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      ..+.+|.+++++|+|++|+++|+++++++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45699999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.62  E-value=0.00058  Score=73.51  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      .++.-..+.|.++|....+| .+|.++.++|+.+.|+..+-.|.-++|.+   ...|.-+|-...++|++.+|.-+|.||
T Consensus       157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d---~e~W~~ladls~~~~~i~qA~~cy~rA  233 (895)
T KOG2076|consen  157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD---YELWKRLADLSEQLGNINQARYCYSRA  233 (895)
T ss_pred             HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            34455566777888887776 99999999999999999999999999999   579999999999999999999999999


Q ss_pred             HHcCCCCHHHHhcC
Q 019871          279 LLAGYEDFKRVRTD  292 (334)
Q Consensus       279 Ielgp~~~~~i~~D  292 (334)
                      |.++|.+++.+..-
T Consensus       234 I~~~p~n~~~~~er  247 (895)
T KOG2076|consen  234 IQANPSNWELIYER  247 (895)
T ss_pred             HhcCCcchHHHHHH
Confidence            99999998855543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.61  E-value=0.0009  Score=60.68  Aligned_cols=88  Identities=17%  Similarity=0.249  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC--------
Q 019871          199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN--------  266 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG--------  266 (334)
                      ..++..+.+.+...|..    ...+.+|.++++.|+|++|+..|++.++..|+++....++|.+|.|+..+.        
T Consensus        22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~  101 (203)
T PF13525_consen   22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDR  101 (203)
T ss_dssp             HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhccc
Confidence            33445555555555552    334699999999999999999999999999999877789999999987654        


Q ss_pred             ---ChHHHHHHHHHHHHcCCCCH
Q 019871          267 ---QVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       267 ---~~eeAl~~lekAIelgp~~~  286 (334)
                         ...+|+..|+..|+.-|+..
T Consensus       102 D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen  102 DQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             --HHHHHHHHHHHHHHHH-TTST
T ss_pred             ChHHHHHHHHHHHHHHHHCcCch
Confidence               34589999999999999743

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.58  E-value=0.00016  Score=67.84  Aligned_cols=60  Identities=20%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ..+|.+++.+|++++|+..|+++++.+|++   +..+.+.|-++...|+.++|+..++++++.
T Consensus       218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  218 DALAAAYLQLGRYEEALEYLEKALKLNPDD---PLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT------------------
T ss_pred             HHHHHHhccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            489999999999999999999999999998   689999999999999999999999998764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.54  E-value=0.0002  Score=49.31  Aligned_cols=40  Identities=20%  Similarity=0.097  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~  260 (334)
                      .+.+|.++.++|++++|++.|+++++.+|++   +.+|+.+|.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La~   43 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhhh
Confidence            3466777777777777777777777777776   456666653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.54  E-value=0.00062  Score=68.48  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      .+++-..+.+...|++.+.+ ..+..+.+.++|+.|+.+.++++.+.|.+   -..|+.+|.||..+|++++|+..++-+
T Consensus       218 ~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  218 EAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            34566667777888887766 78888999999999999999999999998   579999999999999999999998865

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.00086  Score=63.63  Aligned_cols=118  Identities=15%  Similarity=0.100  Sum_probs=79.4

Q ss_pred             HHHHhhcccchhhhhchhcHHH----HHH-----HhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871          161 LLMKMQKRYGKMEQTGELSEKE----IIR-----AERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK  230 (334)
Q Consensus       161 V~lkLek~~~aie~~~~l~ek~----~~~-----a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~  230 (334)
                      .+...+.+.++++++.++.+++    .++     .-..+|...     .+++.-.+-++..+.|.++| .++..|+..|+
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-----~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-----EAIKELNEYLDKFMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence            3445566777777655554432    111     111222222     22233333344557887776 99999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC---ChHHHHHHHHHHHHcCCCCH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG---~~eeAl~~lekAIelgp~~~  286 (334)
                      |+.|.-||++.+=+.|.+   +..+-.+|-++.-+|   +++-|.++|.+|++++|.+.
T Consensus       170 f~kA~fClEE~ll~~P~n---~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQPFN---PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence            999999999999999998   455556676665555   67889999999999999544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0015  Score=62.92  Aligned_cols=107  Identities=8%  Similarity=0.014  Sum_probs=70.4

Q ss_pred             HHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC--C-ChHHHHHHHHHHH
Q 019871          204 NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL--N-QVKAGLSALEDAL  279 (334)
Q Consensus       204 ~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l--G-~~eeAl~~lekAI  279 (334)
                      .-...+..+|++.+-| -+|-+++..|++..|+..|.+|+++.|+++   ..+-..|.++...  + .-.++...|++|+
T Consensus       144 ~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         144 RLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---EILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            3445566778775544 888888888888888888888888888884   3454444444332  2 2467788888888


Q ss_pred             HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .++|.+.....- -.+. .....+|++++..+++.+
T Consensus       221 ~~D~~~iral~l-LA~~-afe~g~~~~A~~~Wq~lL  254 (287)
T COG4235         221 ALDPANIRALSL-LAFA-AFEQGDYAEAAAAWQMLL  254 (287)
T ss_pred             hcCCccHHHHHH-HHHH-HHHcccHHHHHHHHHHHH
Confidence            888887662211 1222 233567777777777666

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.52  E-value=0.00011  Score=74.47  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLE  296 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~  296 (334)
                      .-+.+..+++.+.|+.|+..|.+||+++|+.   +..+-|+|.++.+.+.+..|+.++.+||+++|.+.+ .+++.-.  
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc---a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a--   81 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC---AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA--   81 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcc---eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH--
Confidence            3478899999999999999999999999998   467889999999999999999999999999999776 3344222  


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 019871          297 NLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~  315 (334)
                       .....+|.+++..|++-.
T Consensus        82 -~m~l~~~~~A~~~l~~~~   99 (476)
T KOG0376|consen   82 -VMALGEFKKALLDLEKVK   99 (476)
T ss_pred             -HHhHHHHHHHHHHHHHhh
Confidence             333457777777666544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.52  E-value=0.0048  Score=64.13  Aligned_cols=112  Identities=5%  Similarity=-0.054  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHCCC
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRT--------GKYEVAREKFESVLGS--KPTPEESSVASYNVACCYSKLNQ  267 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~--------g~yeeAl~~fekALel--dP~~~e~~~a~yNlA~ay~~lG~  267 (334)
                      ..++..+.++++++|+.+.++ .++.++...        .+.+.|.+..++++.+  +|..   +.+|.-+|..+...|+
T Consensus       359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~---~~~~~ala~~~~~~g~  435 (517)
T PRK10153        359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL---PRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC---hHHHHHHHHHHHhcCC
Confidence            456678889999999987776 555555432        2456777777787775  5555   5789999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          268 VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       268 ~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      +++|...|++|++++|....++.....   +-..++++++++.|.+++.
T Consensus       436 ~~~A~~~l~rAl~L~ps~~a~~~lG~~---~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        436 TDEAYQAINKAIDLEMSWLNYVLLGKV---YELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHh
Confidence            999999999999999963323332211   1123578888888877764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.46  E-value=0.00019  Score=45.96  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+|+.+|.+|..+|++++|+++|++|++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            47888999999999999999999999888874

...

>PRK11906 transcriptional regulator; Provisional

Probab=97.43  E-value=0.0061  Score=62.14  Aligned_cols=86  Identities=9%  Similarity=-0.088  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHH---hhccCHHHHH-HHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC
Q 019871          199 EIQMQNYMKKK---EQKERREQDL-REGLQLYR---------TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (334)
Q Consensus       199 e~q~~~y~~~i---el~~~~~~~~-nlG~al~~---------~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l  265 (334)
                      +.++.-+.+++   +++|....++ -++.+++.         ...-.+|++.-++|++++|.|   +.+++.+|.++...
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D---a~a~~~~g~~~~~~  351 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD---GKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhh
Confidence            44556678888   8999887766 44444332         345678999999999999999   68999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCHH
Q 019871          266 NQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       266 G~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++++.|+..|++|+.++|+...
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~  373 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIAS  373 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHH
Confidence            9999999999999999998765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.41  E-value=0.0016  Score=71.22  Aligned_cols=65  Identities=9%  Similarity=-0.010  Sum_probs=57.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+|..+..+|+|++|++.|+++++.+|++   +.+++.++..|...++.++|++.+++++..+|.+..
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~  171 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN  171 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence            55778888999999999999999999998   568888899999999999999999999999988444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.40  E-value=0.0012  Score=68.43  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeld-----P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      ++|..|..+++|.+|+..|++|+.+-     ++++..+.++.|+|..|.+.|++++|..+|++|+++-
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            59999999999999999999999763     4444447899999999999999999999999999984

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.36  E-value=0.0018  Score=64.56  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=39.0

Q ss_pred             HHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          206 MKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       206 ~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      .+.++..|++... +.+|..+++.++|++|.+.|+++++.+|++    ..+..+|.++.++|+.++|.++|++++.+
T Consensus       318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA----YDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3334444554443 355555555555555555555555555553    34455555555555555555555555543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.002  Score=61.38  Aligned_cols=70  Identities=14%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      ..|+.+..+++.|+|.+|...|..-+..-|+....+.++|++|-|+..+|++++|...|..+++-.|...
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~  212 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP  212 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence            3789999999999999999999999999999987789999999999999999999999999999888643

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.00063  Score=64.08  Aligned_cols=80  Identities=13%  Similarity=0.073  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      -++.+|.++|-++|..+..+ |.+.+++++.+|+.+...+.+|++++|+.   ..++|-+|.+++....+++||..|.+|
T Consensus        28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~---vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   28 DAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL---VKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---HHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            34569999999999987777 99999999999999999999999999998   789999999999999999999999999


Q ss_pred             HHcC
Q 019871          279 LLAG  282 (334)
Q Consensus       279 Ielg  282 (334)
                      ..+.
T Consensus       105 ~sl~  108 (284)
T KOG4642|consen  105 YSLL  108 (284)
T ss_pred             HHHH
Confidence            6654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.32  E-value=0.00065  Score=71.90  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhhccCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQ--DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~--~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      +-..|.++.|+..+...  ...+|...+..++|++|.++++..++++|-.   ...||++|||+.++++++.|.++|.++
T Consensus       469 d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---LGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---hhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            34566677766544322  2477777888999999999999999999987   469999999999999999999999999


Q ss_pred             HHcCCCCHH
Q 019871          279 LLAGYEDFK  287 (334)
Q Consensus       279 Ielgp~~~~  287 (334)
                      +.++|+++.
T Consensus       546 vtL~Pd~~e  554 (777)
T KOG1128|consen  546 VTLEPDNAE  554 (777)
T ss_pred             hhcCCCchh
Confidence            999999876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0031  Score=61.80  Aligned_cols=129  Identities=17%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhc---HHH----H--HHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHH-HHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELS---EKE----I--IRAERNSGVISNRVREIQMQNYMKKKEQKERREQD-LREGL  223 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~---ek~----~--~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~-~nlG~  223 (334)
                      +.+..-.||.+-.+..++|+...++.   .++    |  |.=+.....--......++....++++-+|+...+ +-+|.
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~  222 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR  222 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence            44556668888888888887433221   111    1  11111111111112233556666777777776444 59999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +....|+|+.|++.++.+++.||++-  +.+.--+..||..+|+.++.+.+|.++++..+.
T Consensus       223 v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         223 VELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            99999999999999999999999984  688899999999999999999999999998775

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.28  E-value=0.0021  Score=54.87  Aligned_cols=78  Identities=17%  Similarity=0.173  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          198 REIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+.+...|...++..++..    ..+.++.+++..|+|++|+..++.+ .-.+-   .+.++.-+|.+|...|++++|+.
T Consensus        64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~---~~~~~~~~Gdi~~~~g~~~~A~~  139 (145)
T PF09976_consen   64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF---KALAAELLGDIYLAQGDYDEARA  139 (145)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch---HHHHHHHHHHHHHHCCCHHHHHH
Confidence            4556667777776554432    2358999999999999999999762 22222   26789999999999999999999


Q ss_pred             HHHHHH
Q 019871          274 ALEDAL  279 (334)
Q Consensus       274 ~lekAI  279 (334)
                      .|++||
T Consensus       140 ~y~~Al  145 (145)
T PF09976_consen  140 AYQKAL  145 (145)
T ss_pred             HHHHhC
Confidence            999986

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.23  E-value=0.00081  Score=46.23  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+|+.+|.+|..+|++++|++.|+++|+.+|++..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            48999999999999999999999999999999876

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.21  E-value=0.0031  Score=64.26  Aligned_cols=80  Identities=16%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      ..+.+-+.+++.+.|.... .+++|.+|++.|++.+|+..+++.+..+|++   +..|+-+|-+|..+|+..+|...+-+
T Consensus       357 ~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         357 KEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCchHHHHHHHHH
Confidence            4455677778888888533 4599999999999999999999999999999   46888888877777665555555544


Q ss_pred             HHHc
Q 019871          278 ALLA  281 (334)
Q Consensus       278 AIel  281 (334)
                      ...+
T Consensus       434 ~~~~  437 (484)
T COG4783         434 GYAL  437 (484)
T ss_pred             HHHh
Confidence            4443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.20  E-value=0.0034  Score=54.57  Aligned_cols=90  Identities=14%  Similarity=0.067  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~-e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      ...++.-|.+++.+-|+.+.+| |++.++--+|+.++|++.+++|+++.-.-. -.-.+|.++|..|..+|+-+.|-.+|
T Consensus        59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DF  138 (175)
T KOG4555|consen   59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADF  138 (175)
T ss_pred             hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhH
Confidence            3446678889999999999888 999999999999999999999999864432 11368999999999999999999999


Q ss_pred             HHHHHcCCCCHH
Q 019871          276 EDALLAGYEDFK  287 (334)
Q Consensus       276 ekAIelgp~~~~  287 (334)
                      +.|-++|.....
T Consensus       139 e~AA~LGS~FAr  150 (175)
T KOG4555|consen  139 EAAAQLGSKFAR  150 (175)
T ss_pred             HHHHHhCCHHHH
Confidence            999999987544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.17  E-value=0.0018  Score=48.12  Aligned_cols=51  Identities=22%  Similarity=0.279  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~  249 (334)
                      +.++..+...++++|.+...+ .+|.+++++|+|++|+..|+++++.+|+++
T Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen   12 EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            445677778888999987765 999999999999999999999999999873

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.16  E-value=0.0053  Score=67.16  Aligned_cols=88  Identities=9%  Similarity=-0.028  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhhccCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERRE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~-~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      ..+...+.+.++.+|... ....+...+...|++++|+..+++++  +|++.. ....-.+|.+|..+|++++|++.|++
T Consensus        51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely~k  127 (822)
T PRK14574         51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALWQS  127 (822)
T ss_pred             HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356778888999999874 44477788889999999999999999  555421 34555558899999999999999999


Q ss_pred             HHHcCCCCHHHH
Q 019871          278 ALLAGYEDFKRV  289 (334)
Q Consensus       278 AIelgp~~~~~i  289 (334)
                      +++.+|++....
T Consensus       128 aL~~dP~n~~~l  139 (822)
T PRK14574        128 SLKKDPTNPDLI  139 (822)
T ss_pred             HHhhCCCCHHHH
Confidence            999999986533

>TIGR00540 hemY_coli hemY protein

Probab=97.15  E-value=0.0031  Score=62.95  Aligned_cols=116  Identities=6%  Similarity=-0.053  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhhccCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD---LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~---~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      .+.+.....+.++..|++...   .-........++.+.+++.++++++.+|+++. ......+|..+.+.|++++|.++
T Consensus       279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~  357 (409)
T TIGR00540       279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLMKHGEFIEAADA  357 (409)
T ss_pred             hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHcccHHHHHHH
Confidence            344444555555555554431   22233333345666666666666666666621 14555666666666666666666


Q ss_pred             HH--HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhc
Q 019871          275 LE--DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFIN  317 (334)
Q Consensus       275 le--kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~  317 (334)
                      |+  ++++..|+..... .-  -..+....+-+++.+.|++.+..
T Consensus       358 le~a~a~~~~p~~~~~~-~L--a~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       358 FKNVAACKEQLDANDLA-MA--ADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHhHHhhcCCCHHHHH-HH--HHHHHHcCCHHHHHHHHHHHHHH
Confidence            66  4555555533311 11  12233334455555555555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.15  E-value=0.0024  Score=64.92  Aligned_cols=93  Identities=15%  Similarity=0.053  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHhhccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          195 NRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+..+.+...|.+++.-+... +..||.|+.+..+|+.++|+++|-+.-.+=-++   ...++++|..|-.+.+..+||+
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---AEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhCHHHHHH
Confidence            344455666777766433222 334688888888889999998888877766666   5688999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHh
Q 019871          274 ALEDALLAGYEDFKRVR  290 (334)
Q Consensus       274 ~lekAIelgp~~~~~i~  290 (334)
                      +|-+|..+=|.++..+.
T Consensus       580 ~~~q~~slip~dp~ils  596 (840)
T KOG2003|consen  580 LLMQANSLIPNDPAILS  596 (840)
T ss_pred             HHHHhcccCCCCHHHHH
Confidence            99999888887765443

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=97.12  E-value=0.00097  Score=49.47  Aligned_cols=40  Identities=33%  Similarity=0.699  Sum_probs=35.9

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .|+|+.+....+++++|..|.+++.|++++ +++||+|+.+
T Consensus         1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~I   40 (70)
T cd00136           1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAV   40 (70)
T ss_pred             CCccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence            478999977666699999999999999887 9999999998

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.12  E-value=0.003  Score=67.29  Aligned_cols=95  Identities=20%  Similarity=0.131  Sum_probs=83.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH--HHHHHHHcCCCCHHHHhcChhhH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS--ALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~--~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      +..|..+...|+++||.++|..|+.+||++   ......+|-|+...|+..-|.+  .+..|+++||.+.+++..-.  .
T Consensus       688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~h---v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG--~  762 (799)
T KOG4162|consen  688 YLRGLLLEVKGQLEEAKEAFLVALALDPDH---VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG--E  762 (799)
T ss_pred             HHhhHHHHHHHhhHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH--H
Confidence            488899999999999999999999999999   5789999999999999988888  99999999999999544433  2


Q ss_pred             HHhcChHHHHHHHHHHHhhhch
Q 019871          297 NLRASEEFDVLLKRFDESFINE  318 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~~~~  318 (334)
                      .+++.+.++++.++|+-.+.++
T Consensus       763 v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  763 VFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHccchHHHHHHHHHHHhhc
Confidence            4677788999999998887654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.12  E-value=0.0011  Score=67.27  Aligned_cols=69  Identities=13%  Similarity=0.009  Sum_probs=52.7

Q ss_pred             cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          244 SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       244 ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      .+|++   +.+|+|+|.+|..+|++++|+.+|++||+++|++.+  .+..+.... +....++.++++.+++.+.
T Consensus        70 ~dP~~---a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAca-ya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         70 ADVKT---AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACC-HAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence            45665   789999999999999999999999999999999764  233333322 3344677788877777764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.09  E-value=0.0022  Score=46.93  Aligned_cols=52  Identities=17%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          197 VREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      -...++..|.+.++.+|++.+. +.+|.++++.|++++|...+++++..+|++
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            3455677888889999987665 599999999999999999999999999997

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.08  E-value=0.0003  Score=68.99  Aligned_cols=86  Identities=9%  Similarity=0.023  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      ...+++.|-.+|+++|..+..+ +++.++.++++...|++.|+.|++++|+.   +..|-.++.+...+|++++|-++|.
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---a~~ykfrg~A~rllg~~e~aa~dl~  206 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---AKGYKFRGYAERLLGNWEEAAHDLA  206 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---ccccchhhHHHHHhhchHHHHHHHH
Confidence            4446678888999999988887 99999999999999999999999999998   4578888999999999999999999


Q ss_pred             HHHHcCCCCH
Q 019871          277 DALLAGYEDF  286 (334)
Q Consensus       277 kAIelgp~~~  286 (334)
                      .|.+++++-.
T Consensus       207 ~a~kld~dE~  216 (377)
T KOG1308|consen  207 LACKLDYDEA  216 (377)
T ss_pred             HHHhccccHH
Confidence            9999988633

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.0056  Score=66.73  Aligned_cols=129  Identities=16%  Similarity=0.176  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          200 IQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      .+.+.+.-.+...|+... .+-++-..|..|+|-.|+.+|.++|.++|...  +..-..+|.|+.++|+.+.|+..+++|
T Consensus       148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhccchhhHHHHHHHH
Confidence            344556666666676544 45888999999999999999999999999875  567788899999999999999999999


Q ss_pred             HHcCCCCHHHHhcChhhHH-HhcChHHHHHHHHHHHhh----hchhHHHHHHHhhcc
Q 019871          279 LLAGYEDFKRVRTDPDLEN-LRASEEFDVLLKRFDESF----INENAINAIKSLFGL  330 (334)
Q Consensus       279 Ielgp~~~~~i~~Dpdl~~-Lr~dp~F~~lL~~~~e~~----~~~~ai~~~k~~~~~  330 (334)
                      ++++|.+...+..-..+.- ......|+..+..+...+    .|-.+++.+-.-|=|
T Consensus       226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf  282 (1018)
T KOG2002|consen  226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF  282 (1018)
T ss_pred             HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence            9999987764322221111 122234555554444444    444455555544433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.04  E-value=0.0078  Score=58.04  Aligned_cols=56  Identities=23%  Similarity=0.204  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      +|.+|.-.|++.....+..   +..++.+|+|+..+|++++|.+.+++|++.+|.+.+.
T Consensus       182 ~~~~A~y~f~El~~~~~~t---~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~  237 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGST---PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT  237 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--S---HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred             hHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence            4666666666655544443   4556666666666666666666666666666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=97.02  E-value=0.0023  Score=48.62  Aligned_cols=58  Identities=24%  Similarity=0.586  Sum_probs=43.8

Q ss_pred             cCCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeecccccccccccc--chhhHHHHHHH
Q 019871           92 EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQ  156 (334)
Q Consensus        92 ~kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~--~~~~v~sai~~  156 (334)
                      .+|+|+.+....+  ++++|..|.+++.|++++ +++||+|+.+-      .+++.  ++..+...+..
T Consensus        11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~in------g~~i~~~~~~~~~~~l~~   72 (82)
T cd00992          11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVN------GVSVEGLTHEEAVELLKN   72 (82)
T ss_pred             CCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEEC------CEEcCccCHHHHHHHHHh
Confidence            4789999976654  689999999999999977 99999999983      23444  44455554443

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.006  Score=58.82  Aligned_cols=95  Identities=15%  Similarity=-0.017  Sum_probs=78.5

Q ss_pred             hhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871          190 SGVISNRVR--EIQMQNYMKKKEQKERREQDL-REGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (334)
Q Consensus       190 ~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG~al~~~---g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~  263 (334)
                      .|.+++.+.  ..+...|.+++.+.|+..+.+ -+|.+++..   ..-.++...|++++++||.+   ..+.+-+|..+.
T Consensus       162 Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~---iral~lLA~~af  238 (287)
T COG4235         162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN---IRALSLLAFAAF  238 (287)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc---HHHHHHHHHHHH
Confidence            444444443  446789999999999987766 777777543   34678999999999999999   689999999999


Q ss_pred             HCCChHHHHHHHHHHHHcCCCCHH
Q 019871          264 KLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       264 ~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..|++.+|+...++-++..|.+..
T Consensus       239 e~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         239 EQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999998654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.0089  Score=56.84  Aligned_cols=93  Identities=14%  Similarity=0.025  Sum_probs=75.9

Q ss_pred             hhhHHHHHHHHHHHHHh--------hccCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHH
Q 019871          194 SNRVREIQMQNYMKKKE--------QKERREQD-----------LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA  254 (334)
Q Consensus       194 ~~~l~e~q~~~y~~~ie--------l~~~~~~~-----------~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a  254 (334)
                      ..+....+...|.+++.        -+|..+++           +|...++...|+|-++++.+...|..+|.+   ..|
T Consensus       190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n---vKA  266 (329)
T KOG0545|consen  190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---VKA  266 (329)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---HHH
Confidence            34445566677777664        23444443           388999999999999999999999999999   689


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871          255 SYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV  289 (334)
Q Consensus       255 ~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i  289 (334)
                      ||.+|-+.+..=+.++|..+|.++|+++|.-....
T Consensus       267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            99999999999999999999999999999855433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.97  E-value=0.0056  Score=58.06  Aligned_cols=72  Identities=22%  Similarity=0.251  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ....+++.|...++.|+|++|+..|++.....|..+....+...++.++.+.+++++|+...++=|.+.|..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~  104 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH  104 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence            356678999999999999999999999999999987667899999999999999999999999999999963

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.95  E-value=0.006  Score=66.50  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhccCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC-
Q 019871          190 SGVISNRVREIQMQNYMKKKEQKERR--EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-  266 (334)
Q Consensus       190 ~g~~~~~l~e~q~~~y~~~iel~~~~--~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG-  266 (334)
                      ...|..+..+.+.+.|++++..+++.  ...+-+|..+...|++++|+.+|+++++..|++   ..+.+-+||.|+..+ 
T Consensus       315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~---~etm~iLG~Lya~~~~  391 (1018)
T KOG2002|consen  315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN---YETMKILGCLYAHSAK  391 (1018)
T ss_pred             HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch---HHHHHHHHhHHHhhhh
Confidence            33444555677778888888777765  223488888888889999999999999888888   568888888888876 


Q ss_pred             ---ChHHHHHHHHHHHHcCCCCHH
Q 019871          267 ---QVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       267 ---~~eeAl~~lekAIelgp~~~~  287 (334)
                         ..+.|...+.++++..|.|.+
T Consensus       392 ~~~~~d~a~~~l~K~~~~~~~d~~  415 (1018)
T KOG2002|consen  392 KQEKRDKASNVLGKVLEQTPVDSE  415 (1018)
T ss_pred             hhHHHHHHHHHHHHHHhcccccHH
Confidence               678888888888888888776

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.017  Score=55.02  Aligned_cols=117  Identities=15%  Similarity=0.059  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      ..+++-|...++.+|.+...+ .+-.++-.+|+--+||+...+-++..+.+   ..+|..+|..|...|+|+.|.-+|++
T Consensus       103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D---~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND---QEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            345666777777788876666 55555677899999999999999999999   57999999999999999999999999


Q ss_pred             HHHcCCCCHHHHhcChhhHHH-hcChHHHHHHHHHHHhhhch
Q 019871          278 ALLAGYEDFKRVRTDPDLENL-RASEEFDVLLKRFDESFINE  318 (334)
Q Consensus       278 AIelgp~~~~~i~~Dpdl~~L-r~dp~F~~lL~~~~e~~~~~  318 (334)
                      .+=+.|.++-....-.++--. -.-...+-..+-|.+++.+.
T Consensus       180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            999999877643332222111 11223444455666666443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.95  E-value=0.012  Score=61.07  Aligned_cols=125  Identities=14%  Similarity=0.109  Sum_probs=85.8

Q ss_pred             hhhhHHHHhhcccchhhhhc-hhcH--H------HHHHHhh-chhhhhhhHH--HHHHHHHHHHHhhcc-----C-H---
Q 019871          157 RVGPLLMKMQKRYGKMEQTG-ELSE--K------EIIRAER-NSGVISNRVR--EIQMQNYMKKKEQKE-----R-R---  215 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~-~l~e--k------~~~~a~~-n~g~~~~~l~--e~q~~~y~~~iel~~-----~-~---  215 (334)
                      .++..|...+++..++..+. ++..  +      -...... +.|+++..+.  ..+.--|.+++.+-.     . .   
T Consensus       204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va  283 (508)
T KOG1840|consen  204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA  283 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            38888888888888887433 2222  1      1111122 2444444442  334555666654322     1 1   


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPT-----PEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~-----~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ....|++.+|++.|+|++|..+|++|+++--.     .++.+..+.+++..+...+++++|+..|++++++
T Consensus       284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            22349999999999999999999999987432     2334678999999999999999999999999886

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0065  Score=61.29  Aligned_cols=86  Identities=12%  Similarity=-0.065  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      +|-+..-|.+.+.++|...-+. .++..+...|+++++|..++++|...|+.    ..|..+|-++...+.+++|+++|.
T Consensus       420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~----~LH~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV----NLHNHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc----HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4666677778888888876665 77888899999999999999999999997    689999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      +|+.++|.+-.
T Consensus       496 ~ALr~dP~~~~  506 (564)
T KOG1174|consen  496 KALRQDPKSKR  506 (564)
T ss_pred             HHHhcCccchH
Confidence            99999998754

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.92  E-value=0.0062  Score=66.92  Aligned_cols=85  Identities=16%  Similarity=0.117  Sum_probs=68.1

Q ss_pred             HHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----------------cchHHHHHHHHHHHHC
Q 019871          203 QNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE----------------ESSVASYNVACCYSKL  265 (334)
Q Consensus       203 ~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~----------------e~~~a~yNlA~ay~~l  265 (334)
                      +-....++..|+....+ .+|..+++.+++.+|.-.  +++.+.+.+.                +...|++.+|.||.++
T Consensus        52 ~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~  129 (906)
T PRK14720         52 DICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKL  129 (906)
T ss_pred             HHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc
Confidence            33345666777775554 999999999999998877  7887777662                1126999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCHHHH
Q 019871          266 NQVKAGLSALEDALLAGYEDFKRV  289 (334)
Q Consensus       266 G~~eeAl~~lekAIelgp~~~~~i  289 (334)
                      |+.++|+..++++|+++|+|...+
T Consensus       130 g~~~ka~~~yer~L~~D~~n~~aL  153 (906)
T PRK14720        130 NENKKLKGVWERLVKADRDNPEIV  153 (906)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHH
Confidence            999999999999999999877643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.84  E-value=0.0069  Score=57.61  Aligned_cols=128  Identities=20%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHhhccCH------HHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHC
Q 019871          197 VREIQMQNYMKKKEQKERR------EQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKL  265 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~------~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~l  265 (334)
                      ..+.++..|.+++++....      ... .+.|..+.++|+|++|++.|++++...-++..    ....+.+...|+...
T Consensus       130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM  209 (282)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence            4567788898888764321      111 38999999999999999999999975433211    123567888899999


Q ss_pred             CChHHHHHHHHHHHHcCCCCH---HHHhcChhhHHHh--cChHHHHHHHHHHHhhhchhHHHHH
Q 019871          266 NQVKAGLSALEDALLAGYEDF---KRVRTDPDLENLR--ASEEFDVLLKRFDESFINENAINAI  324 (334)
Q Consensus       266 G~~eeAl~~lekAIelgp~~~---~~i~~Dpdl~~Lr--~dp~F~~lL~~~~e~~~~~~ai~~~  324 (334)
                      |+.-.|-..+++....+|...   +.-.-..-++.+.  +...|...+..|+..-.+++|.-.|
T Consensus       210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~  273 (282)
T PF14938_consen  210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKM  273 (282)
T ss_dssp             T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence            999999999999999987532   2111111122222  2457999999999999999987543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.005  Score=60.47  Aligned_cols=102  Identities=18%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             HHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHH----HHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcch
Q 019871          180 EKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERRE----QDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESS  252 (334)
Q Consensus       180 ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~----~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~  252 (334)
                      ++++...+.-.|+-.-..  ...+...|-+.|..+-.+.    ..| |++.+.+..|+|..||..+.+|+.++|++   .
T Consensus        77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---~  153 (390)
T KOG0551|consen   77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH---L  153 (390)
T ss_pred             hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch---h
Confidence            333333344445444333  3556778888877654432    233 99999999999999999999999999998   6


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .++|.-|-|+..+.++++|+.||+..+..+-+
T Consensus       154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            89999999999999999999999998887655

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.0079  Score=59.79  Aligned_cols=58  Identities=26%  Similarity=0.362  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      ....|.++|.+|+|++|+..|+-+...+.-+   +..|.|+|||+.-+|++.+|...-++|
T Consensus        60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~---~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAP---AELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhccCCCC---cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            4578999999999999999999998644333   569999999999999999999988877

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.83  E-value=0.0047  Score=59.54  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=67.9

Q ss_pred             HHHHHHHhhccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh-HHHHHHHHHHHH
Q 019871          203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV-KAGLSALEDALL  280 (334)
Q Consensus       203 ~~y~~~iel~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~-eeAl~~lekAIe  280 (334)
                      .-|.+-.+..+.. .....++.++..+|+|++|...+++|++.+|++   +.++.|+++|...+|+. +.+-+.+.+.-.
T Consensus       188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~---~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND---PDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH---HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            3444443333333 333478999999999999999999999999998   67999999999999999 556677777777


Q ss_pred             cCCCCHHHHhcChhhHHHhcChHHHHHHHHH
Q 019871          281 AGYEDFKRVRTDPDLENLRASEEFDVLLKRF  311 (334)
Q Consensus       281 lgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~  311 (334)
                      .+|+.+ ++..   +.  ..+..|.+++.+|
T Consensus       265 ~~p~h~-~~~~---~~--~~~~~FD~~~~ky  289 (290)
T PF04733_consen  265 SNPNHP-LVKD---LA--EKEAEFDRAVAKY  289 (290)
T ss_dssp             HTTTSH-HHHH---HH--HHHHHHHHHHHCC
T ss_pred             hCCCCh-HHHH---HH--HHHHHHHHHHHhc
Confidence            788733 2211   11  2234677776655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR00540 hemY_coli hemY protein

Probab=96.82  E-value=0.012  Score=58.90  Aligned_cols=94  Identities=12%  Similarity=-0.049  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH--HHHhcCh
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF--KRVRTDP  293 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~--~~i~~Dp  293 (334)
                      ...+..+..+...|++++|++.++++++..|++..... ..-+.......++.+.+++.++++++..|+++  ..... -
T Consensus       264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s-L  341 (409)
T TIGR00540       264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA-L  341 (409)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH-H
Confidence            44458888889999999999999999998888742100 12233444445788889999999999988888  42212 1


Q ss_pred             hhHHHhcChHHHHHHHHHH
Q 019871          294 DLENLRASEEFDVLLKRFD  312 (334)
Q Consensus       294 dl~~Lr~dp~F~~lL~~~~  312 (334)
                      ....++ ..+|.++.+.|+
T Consensus       342 g~l~~~-~~~~~~A~~~le  359 (409)
T TIGR00540       342 GQLLMK-HGEFIEAADAFK  359 (409)
T ss_pred             HHHHHH-cccHHHHHHHHH
Confidence            222222 356666766666

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.79  E-value=0.0022  Score=37.92  Aligned_cols=31  Identities=32%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          254 ASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       254 a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +|+++|.+|..+|++++|+.++++++++.|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            5777777777777777777777777776664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.76  E-value=0.031  Score=56.41  Aligned_cols=92  Identities=15%  Similarity=0.016  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      ..+-++.++...++-.+|++...+++..+|++   +..+.-.|..+...++++.|+..+++|+++.|.+++         
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~---------  269 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE---------  269 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH---------
Confidence            44578888889999999999999999999998   678899999999999999999999999999999876         


Q ss_pred             HHhcChHHHHHHHHHHHhhhchhHHHHHHH
Q 019871          297 NLRASEEFDVLLKRFDESFINENAINAIKS  326 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~  326 (334)
                            -|..|.+.|-..-.+++|+-++-+
T Consensus       270 ------~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  270 ------TWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             ------HHHHHHHHHHhcCCHHHHHHHHhc
Confidence                  233344455555555555544443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.76  E-value=0.0023  Score=40.83  Aligned_cols=31  Identities=32%  Similarity=0.358  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT  247 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~  247 (334)
                      ..+.+|.++.++|++++|+++|+++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4568999999999999999999999999995

...

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=96.76  E-value=0.0029  Score=49.01  Aligned_cols=38  Identities=37%  Similarity=0.645  Sum_probs=33.0

Q ss_pred             cceeEeecCC-CceEEEeeCCCCccccccccccCcEeeee
Q 019871           95 YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        95 lgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +|+.+....+ ++++|..|.+++.|+++| +++||+|+.+
T Consensus         3 lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~i   41 (82)
T PF13180_consen    3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAI   41 (82)
T ss_dssp             -SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEE
T ss_pred             ECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEE
Confidence            6899977654 699999999999999999 9999999998

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.72  E-value=0.0061  Score=66.72  Aligned_cols=91  Identities=12%  Similarity=0.056  Sum_probs=72.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR  299 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr  299 (334)
                      .+|..+.+.+++..|+..|+.|+..+|.+   ...|-.+|-+|...|++..|++.|.||..++|...---..-.  ....
T Consensus       567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD---~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A--~~ec  641 (1238)
T KOG1127|consen  567 QRGPYYLEAHNLHGAVCEFQSALRTDPKD---YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA--VMEC  641 (1238)
T ss_pred             hccccccCccchhhHHHHHHHHhcCCchh---HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH--HHHH
Confidence            67888889999999999999999999998   679999999999999999999999999999998543111111  1233


Q ss_pred             cChHHHHHHHHHHHhh
Q 019871          300 ASEEFDVLLKRFDESF  315 (334)
Q Consensus       300 ~dp~F~~lL~~~~e~~  315 (334)
                      ..++|+.++..+.+.+
T Consensus       642 d~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLII  657 (1238)
T ss_pred             HhhhHHHHHHHHHHHH
Confidence            4567888887776554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.71  E-value=0.0085  Score=56.98  Aligned_cols=140  Identities=12%  Similarity=0.079  Sum_probs=85.6

Q ss_pred             ccccchhhHHHHHHHhhhhHHHHhhcccchhhhhc---hhcHH----H-HHHHhhchhhhhhhH-HHHHHHHHHHHHhhc
Q 019871          142 WPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTG---ELSEK----E-IIRAERNSGVISNRV-REIQMQNYMKKKEQK  212 (334)
Q Consensus       142 w~~~~~~~v~sai~~R~G~V~lkLek~~~aie~~~---~l~ek----~-~~~a~~n~g~~~~~l-~e~q~~~y~~~iel~  212 (334)
                      |+..++..... ...+.|+.|...+++..+.+...   .+.++    . ....+...+.+.... ...++..|.+++++.
T Consensus        26 ~~~~~~e~Aa~-~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y  104 (282)
T PF14938_consen   26 SKKPDYEEAAD-LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIY  104 (282)
T ss_dssp             -SCHHHHHHHH-HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            33344544444 56888888888888877776422   22221    0 112222233332222 244566777777653


Q ss_pred             cC------HHHH-HHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          213 ER------REQD-LREGLQLYRT-GKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       213 ~~------~~~~-~nlG~al~~~-g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ..      .+.. .++|..+.+. |++++|+++|++|+++-....   .....+.++|.++..+|++++|++.|++.+..
T Consensus       105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  105 REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            21      1222 3888888888 999999999999998743321   12456789999999999999999999999875


Q ss_pred             C
Q 019871          282 G  282 (334)
Q Consensus       282 g  282 (334)
                      .
T Consensus       185 ~  185 (282)
T PF14938_consen  185 C  185 (282)
T ss_dssp             C
T ss_pred             h
Confidence            3

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.67  E-value=0.002  Score=42.31  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=29.0

Q ss_pred             HHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHH
Q 019871          205 YMKKKEQKERREQDL-REGLQLYRTGKYEVARE  236 (334)
Q Consensus       205 y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~  236 (334)
                      |.++|+++|++..++ ++|.++...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            788999999998876 99999999999999963

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.64  E-value=0.083  Score=52.06  Aligned_cols=105  Identities=19%  Similarity=0.078  Sum_probs=81.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhc--ChhhHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRT--DPDLEN  297 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~--Dpdl~~  297 (334)
                      .++..+....+.+.|+..+.+|+..||+.   ..+-.-+|.++...|+++.|++.++++++.||++...+..  -.....
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~c---vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~  261 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQADKKC---VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ  261 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhCccc---eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998   5788999999999999999999999999999997764321  112223


Q ss_pred             HhcChHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871          298 LRASEEFDVLLKRFDESFINENAINAIKSL  327 (334)
Q Consensus       298 Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~  327 (334)
                      +-+..+|...|.++-+.+.+..++.++-.+
T Consensus       262 lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l  291 (389)
T COG2956         262 LGKPAEGLNFLRRAMETNTGADAELMLADL  291 (389)
T ss_pred             hCCHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence            333445666666666666666666555444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.012  Score=61.30  Aligned_cols=65  Identities=23%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------Cc-chHHHHHHHHHHHHCCChH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP---------------------------EE-SSVASYNVACCYSKLNQVK  269 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~---------------------------~e-~~~a~yNlA~ay~~lG~~e  269 (334)
                      ..-.|..+|++|+|++|++.|+..++-+-++                           ++ ....+||.||.+...|+|.
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~  192 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN  192 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence            3478899999999999999999986554332                           11 2578999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 019871          270 AGLSALEDALLAG  282 (334)
Q Consensus       270 eAl~~lekAIelg  282 (334)
                      +|++.|++|+.++
T Consensus       193 qA~elL~kA~~~~  205 (652)
T KOG2376|consen  193 QAIELLEKALRIC  205 (652)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999996654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.61  E-value=0.0036  Score=41.26  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          254 ASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       254 a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      +|.++|.+|..+|++++|+++|++||.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999996655

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.55  E-value=0.023  Score=56.73  Aligned_cols=82  Identities=13%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhccCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQD--LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~--~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      +...+.++.+..|+....  ...+..+...|++++|+..+++.++.+|++   +.++.-++.+|...|++++|++.|.+.
T Consensus       137 A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l  213 (398)
T PRK10747        137 ANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSM  213 (398)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            345555666666665433  356889999999999999999999999998   679999999999999999999888888


Q ss_pred             HHcCCCC
Q 019871          279 LLAGYED  285 (334)
Q Consensus       279 Ielgp~~  285 (334)
                      .+....+
T Consensus       214 ~k~~~~~  220 (398)
T PRK10747        214 AKAHVGD  220 (398)
T ss_pred             HHcCCCC
Confidence            8776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.53  E-value=0.01  Score=61.74  Aligned_cols=65  Identities=18%  Similarity=0.134  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      +.++..+...|+|++|++..++||+..|+.   ...|+.+|-+|-..|++++|.++++.|-+++..|+
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR  262 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGDLKEAAEAMDEARELDLADR  262 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence            478888889999999999999999999998   57999999999999999999999999999998654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.52  E-value=0.038  Score=54.60  Aligned_cols=84  Identities=17%  Similarity=0.020  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      ++.-|-+-++..|.+-..+ ..+.++..++++++|++.|..+++++|.+.|   +.--+|.-|.--++.+-|+.+|++-+
T Consensus       275 AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE---aiAcia~~yfY~~~PE~AlryYRRiL  351 (478)
T KOG1129|consen  275 ALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE---AIACIAVGYFYDNNPEMALRYYRRIL  351 (478)
T ss_pred             HHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce---eeeeeeeccccCCChHHHHHHHHHHH
Confidence            3334444444444443332 4555555666666666666666666666532   33334444555566666666666666


Q ss_pred             HcCCCCHH
Q 019871          280 LAGYEDFK  287 (334)
Q Consensus       280 elgp~~~~  287 (334)
                      .+|-.+.+
T Consensus       352 qmG~~spe  359 (478)
T KOG1129|consen  352 QMGAQSPE  359 (478)
T ss_pred             HhcCCChH
Confidence            66555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.48  E-value=0.0041  Score=39.06  Aligned_cols=31  Identities=23%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          254 ASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       254 a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ++|++|.||.++|++++|+..|++.++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6778888888888888888888888777665

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.02  Score=54.49  Aligned_cols=69  Identities=23%  Similarity=0.313  Sum_probs=59.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCc-------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGS--------KPTPEE-------SSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALel--------dP~~~e-------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      ...|+.+|++|+|.||..+|..||..        .|..++       ....+-|.+-|+...|++-++++++...|...|
T Consensus       182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            38999999999999999999999843        455432       235788999999999999999999999999999


Q ss_pred             CCHH
Q 019871          284 EDFK  287 (334)
Q Consensus       284 ~~~~  287 (334)
                      .|.+
T Consensus       262 ~nvK  265 (329)
T KOG0545|consen  262 GNVK  265 (329)
T ss_pred             chHH
Confidence            8776

>PRK10941 hypothetical protein; Provisional

Probab=96.45  E-value=0.016  Score=55.46  Aligned_cols=65  Identities=20%  Similarity=0.125  Sum_probs=59.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |+=.++.+.++|+.|+.+.+..+.++|++   +.-+--+|.+|.++|.+..|+.+|+.-|+.-|++..
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQFDPED---PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            56668899999999999999999999998   467889999999999999999999999999998554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.42  E-value=0.053  Score=57.21  Aligned_cols=95  Identities=16%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChH
Q 019871          191 GVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVK  269 (334)
Q Consensus       191 g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~e  269 (334)
                      +.+..+++-++     ..+...|...+.+ -+|+.+..+|+-++|..+...++..|+..   ..-|+-+|..+....+|+
T Consensus        21 kQYkkgLK~~~-----~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S---~vCwHv~gl~~R~dK~Y~   92 (700)
T KOG1156|consen   21 KQYKKGLKLIK-----QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS---HVCWHVLGLLQRSDKKYD   92 (700)
T ss_pred             HHHHhHHHHHH-----HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc---chhHHHHHHHHhhhhhHH
Confidence            44555555443     2233456665554 88999999999999999999999999988   578999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHhcChh
Q 019871          270 AGLSALEDALLAGYEDFKRVRTDPD  294 (334)
Q Consensus       270 eAl~~lekAIelgp~~~~~i~~Dpd  294 (334)
                      +||++|+.|+.++|+|.. |+.|-.
T Consensus        93 eaiKcy~nAl~~~~dN~q-ilrDls  116 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQ-ILRDLS  116 (700)
T ss_pred             HHHHHHHHHHhcCCCcHH-HHHHHH
Confidence            999999999999999766 444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.40  E-value=0.018  Score=48.74  Aligned_cols=60  Identities=18%  Similarity=0.117  Sum_probs=51.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ..++..+...|++++|+..+++++.++|.+   -.+|..+-.+|...|+..+|+..|++....
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPYD---EEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            377788899999999999999999999998   479999999999999999999999998554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.39  E-value=0.015  Score=52.66  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=51.4

Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCCcchHHHH
Q 019871          189 NSGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGK-----------YEVAREKFESVLGSKPTPEESSVASY  256 (334)
Q Consensus       189 n~g~~~~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~-----------yeeAl~~fekALeldP~~~e~~~a~y  256 (334)
                      ..|.-...+.+.++..|..++.++|+..++ +++|+++...+.           |+.|..+|++|...+|++     ..|
T Consensus        42 k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-----e~Y  116 (186)
T PF06552_consen   42 KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-----ELY  116 (186)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT------HHH
T ss_pred             cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-----HHH
Confidence            344334456777889999999999998776 499999987766           899999999999999998     567


Q ss_pred             HHHHHHH
Q 019871          257 NVACCYS  263 (334)
Q Consensus       257 NlA~ay~  263 (334)
                      +.++-.+
T Consensus       117 ~ksLe~~  123 (186)
T PF06552_consen  117 RKSLEMA  123 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.37  E-value=0.033  Score=61.27  Aligned_cols=93  Identities=14%  Similarity=0.061  Sum_probs=77.7

Q ss_pred             hhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871          187 ERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (334)
Q Consensus       187 ~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~  263 (334)
                      |...|.++..-  ...++..++.++...|++-..+ -+|.+|.+.|+|.-|++.|++|..++|.+   ..+.|-.|....
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s---~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS---KYGRFKEAVMEC  641 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh---HHHHHHHHHHHH
Confidence            44455554333  2445677888888899987776 99999999999999999999999999998   578899999999


Q ss_pred             HCCChHHHHHHHHHHHHcC
Q 019871          264 KLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       264 ~lG~~eeAl~~lekAIelg  282 (334)
                      .+|++.+|+..+++-|..-
T Consensus       642 d~GkYkeald~l~~ii~~~  660 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLIIYAF  660 (1238)
T ss_pred             HhhhHHHHHHHHHHHHHHH
Confidence            9999999999999988763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.36  E-value=0.018  Score=43.38  Aligned_cols=30  Identities=30%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          252 SVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      +.+++|+|.+|..+|++++|+.+|++|+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999987

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.32  E-value=0.0029  Score=62.27  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       222 G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      +...+..|.++.||+.|..+|+++|..   +..|-++|.++.++.+...|+.+|..||+++|+..
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~---a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPL---AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCch---hhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            345566777999999999999999998   67999999999999999999999999999999743

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=96.29  E-value=0.0078  Score=45.61  Aligned_cols=41  Identities=34%  Similarity=0.757  Sum_probs=35.3

Q ss_pred             CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+.....  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus        12 ~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In   54 (85)
T smart00228       12 GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVN   54 (85)
T ss_pred             CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            458888866543  689999999999999999 99999999983

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=96.19  E-value=0.0065  Score=46.24  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=33.3

Q ss_pred             cceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +|+.+.. ++|++.|..|.+++.|+++| +++||+|+.+
T Consensus         3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~I   39 (80)
T cd00990           3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAV   39 (80)
T ss_pred             ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEE
Confidence            6888854 57789999999999999998 9999999998

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.18  E-value=0.0091  Score=35.11  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      .+++|.+++.+|++++|+.+|+++++++|++
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            4589999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.16  E-value=0.011  Score=55.33  Aligned_cols=68  Identities=16%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+.-.|.+|..+-..|-+.-|.-.|.+++.+.|+-   +.+++-+|..+...|+++.|.+.|+-.++++|.
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m---~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~  131 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  131 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence            34456799999999999999999999999999998   679999999999999999999999999999997

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.10  E-value=0.11  Score=53.29  Aligned_cols=160  Identities=12%  Similarity=0.026  Sum_probs=82.2

Q ss_pred             HHHHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhc-cCHHHHHHHHHHHHH
Q 019871          153 TIRQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQK-ERREQDLREGLQLYR  227 (334)
Q Consensus       153 ai~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~-~~~~~~~nlG~al~~  227 (334)
                      ++.+..|++...-+++.++.+.+. +++... .-.+.+|-|.....+  .+.++.++.+.-.+- .+.+..+.++..|..
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~  570 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL  570 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344455555555445555554322 222221 124455555544433  244445554433222 223344566667766


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCc-------------------------------chHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          228 TGKYEVAREKFESVLGSKPTPEE-------------------------------SSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       228 ~g~yeeAl~~fekALeldP~~~e-------------------------------~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      +.+..+||++|.++..+-|+++.                               .....-++|..|....=+++||.+|+
T Consensus       571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e  650 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE  650 (840)
T ss_pred             hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            77777777777777766666620                               01233355555555555666777777


Q ss_pred             HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHh
Q 019871          277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDES  314 (334)
Q Consensus       277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~  314 (334)
                      +|--+.|...+|-+-=  -..+|..+.|+++++-|+..
T Consensus       651 kaaliqp~~~kwqlmi--asc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  651 KAALIQPNQSKWQLMI--ASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             HHHhcCccHHHHHHHH--HHHHHhcccHHHHHHHHHHH
Confidence            7776777655543221  12455566666666655443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.07  E-value=0.0094  Score=37.35  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      ..+++|.+++++|++++|+..|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            35789999999999999999999999999973

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.03  E-value=0.063  Score=55.96  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHcCCCCHHHHhcChh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-----QVKAGLSALEDALLAGYEDFKRVRTDPD  294 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG-----~~eeAl~~lekAIelgp~~~~~i~~Dpd  294 (334)
                      .+|..+.++|++++|...|...|+.+|++   ...|..+..|.....     ..+.-+..|++--+..|. ...++.-| 
T Consensus        43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn---~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~-s~~~~rl~-  117 (517)
T PF12569_consen   43 KRAELLLKLGRKEEAEKIYRELIDRNPDN---YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR-SDAPRRLP-  117 (517)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc-ccchhHhh-
Confidence            88889999999999999999999999988   456666777763332     456666667766666554 22233333 


Q ss_pred             hHHHhcChHHHHHHHHHHHhhhchhHHHHHH
Q 019871          295 LENLRASEEFDVLLKRFDESFINENAINAIK  325 (334)
Q Consensus       295 l~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k  325 (334)
                      |..+ ..++|+..+..|=...+....-..+.
T Consensus       118 L~~~-~g~~F~~~~~~yl~~~l~KgvPslF~  147 (517)
T PF12569_consen  118 LDFL-EGDEFKERLDEYLRPQLRKGVPSLFS  147 (517)
T ss_pred             cccC-CHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            3323 35789999888877776654434333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]

Probab=95.98  E-value=0.011  Score=60.56  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=61.3

Q ss_pred             hccceEEEeec---CC-cceeEee----cCCCceEEEeeCCCCccccccccccCcEeeeeccc-cccccccccchhhHHH
Q 019871           82 EKYEEYEVEIE---QP-YGLKFAK----GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTMY  152 (334)
Q Consensus        82 ~~~~~~~v~l~---kP-lgl~~~~----~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~-fg~~~w~~~~~~~v~s  152 (334)
                      |.++-++|+|.   =| |||.+--    .-||||||..|-+||..++.|.|.+||-|+.|-.+ |+.---  ++-=+|+.
T Consensus       246 mslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSN--d~AVrvLR  323 (626)
T KOG3571|consen  246 MSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSN--DQAVRVLR  323 (626)
T ss_pred             cceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCc--hHHHHHHH
Confidence            56788899887   56 9998832    25889999999999999999999999999997544 442111  22224555


Q ss_pred             HHHHhhhhHHHHhhcc
Q 019871          153 TIRQRVGPLLMKMQKR  168 (334)
Q Consensus       153 ai~~R~G~V~lkLek~  168 (334)
                      -|-.+.|++.+...+.
T Consensus       324 EaV~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  324 EAVSRPGPIKLTVAKC  339 (626)
T ss_pred             HHhccCCCeEEEEeec
Confidence            5667788766554443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.93  E-value=0.053  Score=54.99  Aligned_cols=126  Identities=15%  Similarity=0.083  Sum_probs=88.0

Q ss_pred             HhhhhHHHHhhcccchhhhhc-hhcH------HHHH-HHhhchhhhh--hhHHHHHHHHHHHHH----hhccC---HHHH
Q 019871          156 QRVGPLLMKMQKRYGKMEQTG-ELSE------KEII-RAERNSGVIS--NRVREIQMQNYMKKK----EQKER---REQD  218 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~-~l~e------k~~~-~a~~n~g~~~--~~l~e~q~~~y~~~i----el~~~---~~~~  218 (334)
                      ...|+.|.-++++..+|+... .+..      +..- +++-|.|+..  .+--+.+++.|...+    |+...   +..+
T Consensus       199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc  278 (639)
T KOG1130|consen  199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC  278 (639)
T ss_pred             cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            346777777777777776422 1111      1111 3455665544  344567777777654    44433   3456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPT----PEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~----~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      |.+|+.|+-..+|+.||.++.+-|++..+    ..+ ..++|.+|.+|..+|..+.|+.+.++++++.
T Consensus       279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe-~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE-LRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            89999999999999999999998766433    233 6899999999999999999999999887764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.082  Score=53.60  Aligned_cols=93  Identities=18%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------------------cchHHHHHHHHHHHHCCCh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLNQV  268 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------------------e~~~a~yNlA~ay~~lG~~  268 (334)
                      .+|.+++..|++.+|+..|+++.-+||..-                               ..+.-|+--+|......++
T Consensus       237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~  316 (564)
T KOG1174|consen  237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF  316 (564)
T ss_pred             HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence            777777777888888888887777777751                               1123455566666666777


Q ss_pred             HHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          269 KAGLSALEDALLAGYEDFK-RVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       269 eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ..|+..-+|+|..+|.+.+ .+++...   |++.++-++++=.|+...
T Consensus       317 ~rAL~~~eK~I~~~~r~~~alilKG~l---L~~~~R~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  317 ERALNFVEKCIDSEPRNHEALILKGRL---LIALERHTQAVIAFRTAQ  361 (564)
T ss_pred             HHHHHHHHHHhccCcccchHHHhccHH---HHhccchHHHHHHHHHHH
Confidence            7777777777777777666 5566544   333334444444444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.78  E-value=0.48  Score=38.49  Aligned_cols=61  Identities=30%  Similarity=0.373  Sum_probs=39.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +++..|+++.|+..|++++..+|........++.++..+...+++++|+..+.++++..+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            6777777777777777777666520011455666666666777777777777777777666

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.022  Score=54.82  Aligned_cols=75  Identities=23%  Similarity=0.308  Sum_probs=64.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR  299 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr  299 (334)
                      +++.++.-.++|.+|...|++.++.||.+   +.+-+|.|.|+.-+|+..+|++.++.+++..|.-.   .++.-+.+|+
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~---l~es~~~nL~  330 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRN---AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY---LHESVLFNLT  330 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCc---hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc---hhhhHHHHHH
Confidence            88888999999999999999999999999   57999999999999999999999999999988732   3333344454


Q ss_pred             c
Q 019871          300 A  300 (334)
Q Consensus       300 ~  300 (334)
                      .
T Consensus       331 t  331 (366)
T KOG2796|consen  331 T  331 (366)
T ss_pred             H
Confidence            3

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=95.73  E-value=0.016  Score=44.42  Aligned_cols=37  Identities=38%  Similarity=0.710  Sum_probs=33.0

Q ss_pred             cceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +|+.|.. ++++++|..|.+++.|+++| +++||+|+.+
T Consensus         4 lG~~~~~-~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~v   40 (85)
T cd00988           4 IGLELKY-DDGGLVITSVLPGSPAAKAG-IKAGDIIVAI   40 (85)
T ss_pred             EEEEEEE-cCCeEEEEEecCCCCHHHcC-CCCCCEEEEE
Confidence            6888854 56789999999999999987 9999999998

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.69  E-value=0.018  Score=46.18  Aligned_cols=49  Identities=16%  Similarity=0.176  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          234 AREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       234 Al~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      .+..++++++.+|++   ..+.|.+|.++...|++++|++.|-..+..++.+
T Consensus         7 ~~~al~~~~a~~P~D---~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDD---LDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            356677788888887   5688888888888888888888888888877664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.69  E-value=0.022  Score=37.31  Aligned_cols=30  Identities=30%  Similarity=0.334  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          252 SVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      +.++.|+|.+|..+|++++|+..+++|+++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999886

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.65  E-value=0.017  Score=54.44  Aligned_cols=62  Identities=23%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..+.+.++++.|.+.|.+++++-|++   ...|+.+|....+.|+++.|.+.|++.++++|++.-
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w---~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEW---AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchh---hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34578899999999999999999998   689999999999999999999999999999998654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.61  E-value=0.05  Score=43.45  Aligned_cols=60  Identities=20%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCc------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          224 QLYRTGKYEVAREKFESVLGSKPTPEE------SSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       224 al~~~g~yeeAl~~fekALeldP~~~e------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      ...+.|+|.+|++.+.+.++.......      ...++.++|.++...|++++|+..+++||.+--
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            346889999999998888876544321      146889999999999999999999999998843

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.60  E-value=0.51  Score=53.33  Aligned_cols=61  Identities=15%  Similarity=-0.010  Sum_probs=37.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .+...+.+.|++++|++.|+++++......  ...|..+..+|.+.|++++|++.|++..+.+
T Consensus       654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g  714 (1060)
T PLN03218        654 ALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSIK  714 (1060)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            555666666666666666666665432211  3566666677777777777777776665543

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.58  E-value=0.51  Score=53.31  Aligned_cols=69  Identities=16%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALe--ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      ..|+......+...|.+.|++++|++.|++..+  ..|+    ...|..+..+|.+.|++++|++.|++..+.|.
T Consensus       680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd----vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi  750 (1060)
T PLN03218        680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT----VSTMNALITALCEGNQLPKALEVLSEMKRLGL  750 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            345555555889999999999999999999875  4565    47899999999999999999999999887664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.53  E-value=0.14  Score=47.10  Aligned_cols=99  Identities=12%  Similarity=0.036  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHh-hccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          196 RVREIQMQNYMKKKE-QKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       196 ~l~e~q~~~y~~~ie-l~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      +....+.+.|.+++. +.-.+ ...+-++.+++..+++.+|...+++..+.+|..-. ++.+.-.|.+|..+|++.+|..
T Consensus       103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~-pd~~Ll~aR~laa~g~~a~Aes  181 (251)
T COG4700         103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS-PDGHLLFARTLAAQGKYADAES  181 (251)
T ss_pred             hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC-CCchHHHHHHHHhcCCchhHHH
Confidence            334556677887763 33333 33458889999999999999999999999987632 5567777889999999999999


Q ss_pred             HHHHHHHcCCCCHHHHhcChhh
Q 019871          274 ALEDALLAGYEDFKRVRTDPDL  295 (334)
Q Consensus       274 ~lekAIelgp~~~~~i~~Dpdl  295 (334)
                      .|+-||...|.....++...-|
T Consensus       182 afe~a~~~ypg~~ar~~Y~e~L  203 (251)
T COG4700         182 AFEVAISYYPGPQARIYYAEML  203 (251)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999988854455554433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.51  E-value=0.47  Score=38.54  Aligned_cols=84  Identities=30%  Similarity=0.291  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhhccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHCCChHHHH
Q 019871          198 REIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPT-PEESSVASYNVACCYSKLNQVKAGL  272 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~----~~~~~nlG~al~~~g~yeeAl~~fekALeldP~-~~e~~~a~yNlA~ay~~lG~~eeAl  272 (334)
                      ...+...|.+.+...+.    ....+..+..+...+++++|+..+.+++...|. .   ...+.+++.++...+++++|+
T Consensus       146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~  222 (291)
T COG0457         146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD---AEALLNLGLLYLKLGKYEEAL  222 (291)
T ss_pred             HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc---hHHHHHhhHHHHHcccHHHHH
Confidence            44555666666665541    233346777788999999999999999999998 4   478999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 019871          273 SALEDALLAGYE  284 (334)
Q Consensus       273 ~~lekAIelgp~  284 (334)
                      ..+.+++...|.
T Consensus       223 ~~~~~~~~~~~~  234 (291)
T COG0457         223 EYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHhhCcc
Confidence            999999999987

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.51  E-value=0.021  Score=37.57  Aligned_cols=28  Identities=29%  Similarity=0.264  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSK  245 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeld  245 (334)
                      ..++|.++.++|+|++|+.+|+++|++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3589999999999999999999966543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.48  E-value=0.24  Score=54.03  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             HHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          205 YMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       205 y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      --+.+...|+..-+. -+|..++++|++++|+.+++..-...+++   -..+--+-.||..+|+.++|+..|++|+..+|
T Consensus        32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D---~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD---DLTLQFLQNVYRDLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc---hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence            334455678776654 89999999999999997776666666665   36788889999999999999999999999999


Q ss_pred             C
Q 019871          284 E  284 (334)
Q Consensus       284 ~  284 (334)
                      .
T Consensus       109 ~  109 (932)
T KOG2053|consen  109 S  109 (932)
T ss_pred             c
Confidence            8

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.44  E-value=0.041  Score=40.02  Aligned_cols=34  Identities=15%  Similarity=0.062  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          254 ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       254 a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+|.+|.++.++|++++|..+++.+|++.|+|..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            4677788888888888888888888888877654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.40  E-value=0.16  Score=54.12  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR  299 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr  299 (334)
                      .+...|.+.|++++|.+.|++..+  |+    ..+|+.+..+|.+.|+.++|++.|++.++.|..        |+..   
T Consensus       365 ~Li~~y~k~G~~~~A~~vf~~m~~--~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--------Pd~~---  427 (697)
T PLN03081        365 ALVDLYSKWGRMEDARNVFDRMPR--KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--------PNHV---  427 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC--CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CCHH---
Confidence            344444455555555555554432  22    234555555555555555555555555554432        2211   


Q ss_pred             cChHHHHHHHHHHHhhhchhHHHHHHHhh
Q 019871          300 ASEEFDVLLKRFDESFINENAINAIKSLF  328 (334)
Q Consensus       300 ~dp~F~~lL~~~~e~~~~~~ai~~~k~~~  328 (334)
                         -|..+|..+.+.-..+.|.+.++...
T Consensus       428 ---T~~~ll~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        428 ---TFLAVLSACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             ---HHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence               25666666666666666666666553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.40  E-value=0.14  Score=43.84  Aligned_cols=89  Identities=13%  Similarity=0.096  Sum_probs=61.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhccC-------HHH---HH---HHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCc-c
Q 019871          193 ISNRVREIQMQNYMKKKEQKER-------REQ---DL---REGLQLYRTGKYEVAREKFESVLGS-------KPTPEE-S  251 (334)
Q Consensus       193 ~~~~l~e~q~~~y~~~iel~~~-------~~~---~~---nlG~al~~~g~yeeAl~~fekALel-------dP~~~e-~  251 (334)
                      +..+..+.+..+|.++++..-.       |.+   ++   -+.-++..+|+|++++..-+++|..       +.+... -
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence            3445556677888888775422       111   12   7788899999999999988888854       333210 0


Q ss_pred             hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          252 SVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ..+-+++|.++..+|+.++|+..|++|-++
T Consensus       100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            145689999999999999999999999775

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.34  E-value=0.27  Score=52.41  Aligned_cols=118  Identities=15%  Similarity=0.050  Sum_probs=62.2

Q ss_pred             hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLG---SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALe---ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..|+......+-.++.+.|++++|.+.|++..+   +.|+.    ..|.-+..+|.+.|++++|++.+++. ...|+..-
T Consensus       422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~----~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~  496 (697)
T PLN03081        422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA----MHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNM  496 (697)
T ss_pred             CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc----cchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHH
Confidence            445555555666666777777777777776654   23432    34555666666666666666665543 12222110


Q ss_pred             H--H------hcChhh-----HHH-hc----ChHHHHHHHHHHHhhhchhHHHHHHHhhcccCC
Q 019871          288 R--V------RTDPDL-----ENL-RA----SEEFDVLLKRFDESFINENAINAIKSLFGLLDK  333 (334)
Q Consensus       288 ~--i------~~Dpdl-----~~L-r~----dp~F~~lL~~~~e~~~~~~ai~~~k~~~~~~~~  333 (334)
                      |  +      ..+-+.     ..+ .-    ..-|.-+++-|-+.-.+++|.+.++..-..|-+
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            0  0      000000     000 00    113666667777777778888887777665543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=0.031  Score=54.65  Aligned_cols=65  Identities=25%  Similarity=0.416  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ..+.|-.+|+.|+|++|++-|+.|++..--.   +-.-||+|.|+...++++.|+++..+-|+.|-.+
T Consensus       147 ~in~gCllykegqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~  211 (459)
T KOG4340|consen  147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQ  211 (459)
T ss_pred             hccchheeeccccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Confidence            3599999999999999999999999987665   4688999999999999999999999988877543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.16  E-value=1.4  Score=42.44  Aligned_cols=68  Identities=22%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871          218 DLREGLQLYR----TGKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV  289 (334)
Q Consensus       218 ~~nlG~al~~----~g~yeeAl~~fekALe-ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i  289 (334)
                      .-.++.++.+    .+++.+|.-.|++.-+ ..|+    +......|||+..+|++++|...++.|+..++.+++.+
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL  244 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL  244 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence            3357766643    4679999999999887 5666    57899999999999999999999999999999887643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=0.12  Score=54.14  Aligned_cols=63  Identities=14%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |.++.++|++++.++|+.+++   .+++.+   .-+..-+|-++.++|+|++|+..|+.-++.+-++.+
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            588899999999999999888   444444   237777888888889999999999998888877665

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.00  E-value=0.05  Score=39.56  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~  249 (334)
                      .+.++..++++|+|++|....+.+|+++|+|.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            56899999999999999999999999999983

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.91  E-value=0.2  Score=50.32  Aligned_cols=69  Identities=19%  Similarity=0.170  Sum_probs=47.3

Q ss_pred             HHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          207 KKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       207 ~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      +.+...|.++..+ .+|..+++.+.|.+|-..|+.|++..|..    ..|..+|.+|.++|+..+|-+..++++
T Consensus       319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~----~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA----SDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3344444444443 77777777777777777777777777764    467777777777777777777777776

>PLN03077 Protein ECB2; Provisional

Probab=94.90  E-value=0.44  Score=52.00  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      ..|.+.|++++|...|++.   .|+    ..+|..+..+|.+.|+.++|++.|++.++.|.
T Consensus       532 ~~y~k~G~~~~A~~~f~~~---~~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~  585 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH---EKD----VVSWNILLTGYVAHGKGSMAVELFNRMVESGV  585 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc---CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            6677889999999888886   444    46899999999999999999999998887653

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=94.89  E-value=0.017  Score=59.56  Aligned_cols=73  Identities=22%  Similarity=0.366  Sum_probs=54.1

Q ss_pred             eecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhh
Q 019871           90 EIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ  166 (334)
Q Consensus        90 ~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLe  166 (334)
                      ...-|+|+++....++.++|+.|..||.++|+|++.+||.|..+-.    .-....+..++....++-.|+++++.-
T Consensus       131 ~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNG----i~v~~~~~~e~q~~l~~~~G~itfkii  203 (542)
T KOG0609|consen  131 NTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNG----ISVANKSPEELQELLRNSRGSITFKII  203 (542)
T ss_pred             cCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecC----eecccCCHHHHHHHHHhCCCcEEEEEc
Confidence            3346999999766666899999999999999999999999999732    222234455666666655577766543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.74  E-value=0.78  Score=43.71  Aligned_cols=67  Identities=18%  Similarity=0.258  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHcCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN--------QVKAGLSALEDALLAGYE  284 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG--------~~eeAl~~lekAIelgp~  284 (334)
                      .+.++.++|+.++|++|+...++-+.+.|+++....++|-+|.++...=        ...+|+..++..|..-|+
T Consensus        74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn  148 (254)
T COG4105          74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN  148 (254)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence            4699999999999999999999999999999877789999999976532        356889999999999886

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.68  E-value=0.12  Score=54.71  Aligned_cols=79  Identities=19%  Similarity=0.147  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      .++.+|.+++.+.+++.+.+ .++..+.++++|+.....-.+-++++|..   ...|...|.++..+|++..|+..++.-
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~---ra~w~~~Avs~~L~g~y~~A~~il~ef  169 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ---RASWIGFAVAQHLLGEYKMALEILEEF  169 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555554443 55555555555555555555555555554   356666666677777777776666555


Q ss_pred             HHc
Q 019871          279 LLA  281 (334)
Q Consensus       279 Iel  281 (334)
                      +..
T Consensus       170 ~~t  172 (700)
T KOG1156|consen  170 EKT  172 (700)
T ss_pred             HHh
Confidence            443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.63  E-value=0.22  Score=51.90  Aligned_cols=91  Identities=14%  Similarity=0.117  Sum_probs=75.6

Q ss_pred             hhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871          193 ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYR---TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (334)
Q Consensus       193 ~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~---~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~  268 (334)
                      .+......++..|.++++..|.....+ |++.++++   .|+--.|+..+..|+++||-.   ..+||.++.|+..++++
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~---~kah~~la~aL~el~r~  461 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI---QKAHFRLARALNELTRY  461 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH---HHHHHHHHHHHHHHhhH
Confidence            344444556788999999889888877 88888776   457778999999999999987   68999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCH
Q 019871          269 KAGLSALEDALLAGYEDF  286 (334)
Q Consensus       269 eeAl~~lekAIelgp~~~  286 (334)
                      .+|+++...+.-..|.+.
T Consensus       462 ~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  462 LEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHhhhhHHHHhhcCchhh
Confidence            999999988888888443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.26  E-value=0.73  Score=36.85  Aligned_cols=74  Identities=12%  Similarity=0.076  Sum_probs=50.5

Q ss_pred             HHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          203 QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       203 ~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      ....+.++.+|.+.+. +.++..+...|+|++|++.+-+++..+|++.+ ..+--.+=-++..+|.-+.-...+++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~-~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED-DAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC-CHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc-cHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            4556778889998555 69999999999999999999999999998743 23444445556666665544444444

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=94.25  E-value=0.03  Score=59.30  Aligned_cols=76  Identities=20%  Similarity=0.361  Sum_probs=62.1

Q ss_pred             cCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhhcccch
Q 019871           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK  171 (334)
Q Consensus        92 ~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLek~~~a  171 (334)
                      ..|.||+|.++....|-|..|.|..-|+|+. +.+||+++++      +..|++...++...+.+-.|.++.-.++...+
T Consensus       385 s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai------~~~pi~s~~q~~~~~~s~~~~~~~l~~~~~~~  457 (1051)
T KOG3532|consen  385 SSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAI------NNVPIRSERQATRFLQSTTGDLTVLVERSLDD  457 (1051)
T ss_pred             cCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEe------cCccchhHHHHHHHHHhcccceEEEEeecccc
Confidence            4799999988877899999999999999998 9999999998      46677777777777777777777666665555


Q ss_pred             hhh
Q 019871          172 MEQ  174 (334)
Q Consensus       172 ie~  174 (334)
                      ++.
T Consensus       458 ~d~  460 (1051)
T KOG3532|consen  458 IDE  460 (1051)
T ss_pred             hhh
Confidence            553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.02  E-value=0.58  Score=40.16  Aligned_cols=64  Identities=16%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------chHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---------~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ++..|.-.++.|-|++|...|.+|++...+.|.         .+..|-.++-++..+|+|++++..-++||..
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            346677788999999999999999988655431         1456778899999999999999999999865

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.81  E-value=0.46  Score=46.86  Aligned_cols=67  Identities=19%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      +.+.+...++.|+.+.|...|+-|++++|++   +.++...|...-.-.++-+|-.+|-+|+.++|.+-+
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~---p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTN---PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCC---HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            4477778889999999999999999999999   578999999888888999999999999999998766

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=93.70  E-value=0.11  Score=39.84  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..|+.|..|.+++.|+++| +++||+|+.+      ..+++.++..+..++..
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~I------ng~~v~~~~d~~~~l~~   54 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSI------NGTPITTLEDFMEALKP   54 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEE------CCEEcCCHHHHHHHHhc
Confidence            4579999999999999998 9999999998      34556666655555543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.68  E-value=2.1  Score=35.90  Aligned_cols=69  Identities=23%  Similarity=0.074  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------cchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------ESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      ...|......++.+.++..+++++.+-....                   ....+...++.++...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3556677788899999999999998854331                   012455667777889999999999999999


Q ss_pred             HcCCCCHH
Q 019871          280 LAGYEDFK  287 (334)
Q Consensus       280 elgp~~~~  287 (334)
                      ..+|-+-.
T Consensus        90 ~~dP~~E~   97 (146)
T PF03704_consen   90 ALDPYDEE   97 (146)
T ss_dssp             HHSTT-HH
T ss_pred             hcCCCCHH
Confidence            99998543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.61  E-value=0.27  Score=52.26  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .||-+.-+|+..+|..+++.|...+..-|.+.+   .+....+++|||..+.+.|.|++++++|=+.+|.++
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence            468899999999999999999999988777632   256788999999999999999999999999998754

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=1  Score=42.86  Aligned_cols=69  Identities=14%  Similarity=0.096  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHH-CCChHHHHHHHHHHHHcCC
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSK-LNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~-lG~~eeAl~~lekAIelgp  283 (334)
                      ....|-.+.-.|+..+.++|+.+++++|++--+-+.   .+.-+..+|-.|-. +.+++.||.+|++|-+.--
T Consensus        73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen   73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence            344565566667778899999999999888665421   12334556666643 4788888888888876633

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.47  E-value=2  Score=39.79  Aligned_cols=74  Identities=16%  Similarity=0.154  Sum_probs=62.2

Q ss_pred             HHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          208 KKEQKERREQDLREGLQLYRTGKYEVAREKFESVL-GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       208 ~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekAL-eldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ..++.|.-...+.+|+++.++|+|.||...|++++ .+.-++   +..+..+|.+...++++.+|...|++..+.+|.
T Consensus        82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            34456777777899999999999999999999998 455555   568889999999999999999999999998874

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.43  E-value=0.28  Score=38.72  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      .+..|.-+|...+.++|+..++++++..++.++.-.++-.+..+|+..|++.+.+++.-+=+++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999998887544455556666788999999999887776665

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.16  E-value=0.74  Score=47.36  Aligned_cols=75  Identities=16%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             hhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          210 EQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       210 el~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e-~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +..|+.... +..|..+...|+.++|++.|++++....+... ....+|.+|.|+..+.+|++|..++.+.++.+.+
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence            345665443 48888999999999999999988854433211 1467889999999999999999999999887766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.15  E-value=0.54  Score=43.30  Aligned_cols=64  Identities=13%  Similarity=0.030  Sum_probs=50.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      ++++.+++++|++++|+..++..-+  +.+.  +..---+|-++..+|+-++|...|++|++.+++..
T Consensus       130 lRLArvq~q~~k~D~AL~~L~t~~~--~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         130 LRLARVQLQQKKADAALKTLDTIKE--ESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcccc--ccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            4999999999999999998765443  2221  34456689999999999999999999999976533

>PLN03077 Protein ECB2; Provisional

Probab=93.11  E-value=1.3  Score=48.43  Aligned_cols=61  Identities=20%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALe--ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      ..+-.+...+.+.|+.++|++.|++..+  +.|+.    ..+..+-.+|.+.|++++|++.|+...+
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~----~T~~~ll~a~~~~g~v~ea~~~f~~M~~  617 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE----VTFISLLCACSRSGMVTQGLEYFHSMEE  617 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence            3334778888999999999999999886  45764    5777788889999999999999999884

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.03  E-value=0.76  Score=40.14  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             ccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          212 KERREQDLREGLQLYRTG---KYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       212 ~~~~~~~~nlG~al~~~g---~yeeAl~~fekALe-ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+..+..|+++.++.+..   +..+-|.+++..++ -.|+.  ...-.|.+|..++++++|+.|+.+++..|+..|++..
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            455667788888887654   46778999999997 44544  2567899999999999999999999999999999765

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.97  E-value=0.14  Score=33.30  Aligned_cols=28  Identities=25%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSK  245 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeld  245 (334)
                      ..++|..+...|+|++|+.++++++++.
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4589999999999999999999999763

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=92.74  E-value=0.18  Score=38.74  Aligned_cols=45  Identities=24%  Similarity=0.431  Sum_probs=34.8

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      .++++|..|.+++.|+++| ++.||+|+.+.      .+++.+...+..++.
T Consensus        23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~In------g~~i~~~~~~~~~l~   67 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVN------GKPVKSVADLRRALA   67 (90)
T ss_pred             CCEEEEEEECCCCHHHHcC-CCcCCEEEEEC------CEECCCHHHHHHHHH
Confidence            4589999999999999998 99999999983      445555555555444

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=92.62  E-value=0.18  Score=37.95  Aligned_cols=44  Identities=23%  Similarity=0.448  Sum_probs=33.9

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      .+.|..|.+++.|+++| +++||+|+.+-      .+++.++..+.+.+..
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~in------g~~i~~~~~~~~~l~~   56 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAIN------GQKIKSWEDLVDAVQE   56 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHH
Confidence            58899999999999988 99999999983      4455655555554444

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.51  E-value=4.9  Score=38.90  Aligned_cols=92  Identities=18%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCHHHHhc
Q 019871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-GYEDFKRVRT  291 (334)
Q Consensus       213 ~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-gp~~~~~i~~  291 (334)
                      |......-++.+...+|+|++|....+.||..++++   +..+-|+-.|-..+|...++..-+-.-++. .|+ ..++..
T Consensus       205 ~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d---petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~-h~~vk~  280 (299)
T KOG3081|consen  205 PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD---PETLANLIVLALHLGKDAEVTERNLSQLKLSHPE-HPFVKH  280 (299)
T ss_pred             CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc-chHHHH
Confidence            444444578889999999999999999999999998   579999999999999998887766555544 454 333321


Q ss_pred             ChhhHHHhcChHHHHHHHHHHH
Q 019871          292 DPDLENLRASEEFDVLLKRFDE  313 (334)
Q Consensus       292 Dpdl~~Lr~dp~F~~lL~~~~e  313 (334)
                         +.  .++.+|.+++.+|+-
T Consensus       281 ---~~--ekeaeFDrl~~qy~~  297 (299)
T KOG3081|consen  281 ---LN--EKEAEFDRLVLQYDT  297 (299)
T ss_pred             ---HH--HHHHHHHHHHHHhcc
Confidence               11  124589988888763

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=92.48  E-value=1.9  Score=46.34  Aligned_cols=82  Identities=18%  Similarity=0.064  Sum_probs=60.8

Q ss_pred             HHHhhccCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          207 KKKEQKERREQDLRE-GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       207 ~~iel~~~~~~~~nl-G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      .+.+.+|+.++.+-- --..++..+|+.|-..|.+|-...|+-    ..|+.-+.....+++.++|+..|++||+.-|..
T Consensus       609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f  684 (913)
T KOG0495|consen  609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----RVWMKSANLERYLDNVEEALRLLEEALKSFPDF  684 (913)
T ss_pred             HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence            445566776555433 334477778888888888888877773    688888888888999999999999999998887


Q ss_pred             HH-HHhcC
Q 019871          286 FK-RVRTD  292 (334)
Q Consensus       286 ~~-~i~~D  292 (334)
                      .+ |++..
T Consensus       685 ~Kl~lmlG  692 (913)
T KOG0495|consen  685 HKLWLMLG  692 (913)
T ss_pred             HHHHHHHh
Confidence            76 55544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.33  E-value=0.42  Score=50.49  Aligned_cols=86  Identities=12%  Similarity=0.049  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKER--REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       199 e~q~~~y~~~iel~~~--~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      ..+..+.+.++.+.|.  +-...+++.++.+-|..-+|-..+.++|.++-..   +..+|-+|.+|..+.+++.|+++|+
T Consensus       624 ~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se---pl~~~~~g~~~l~l~~i~~a~~~~~  700 (886)
T KOG4507|consen  624 TFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE---PLTFLSLGNAYLALKNISGALEAFR  700 (886)
T ss_pred             HHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC---chHHHhcchhHHHHhhhHHHHHHHH
Confidence            4556677777766653  3335699999999999999999999999998443   6789999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      .|++++|++..
T Consensus       701 ~a~~~~~~~~~  711 (886)
T KOG4507|consen  701 QALKLTTKCPE  711 (886)
T ss_pred             HHHhcCCCChh
Confidence            99999997654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.27  E-value=2.9  Score=39.91  Aligned_cols=102  Identities=17%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH----HHhcCh
Q 019871          222 GLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK----RVRTDP  293 (334)
Q Consensus       222 G~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~----~i~~Dp  293 (334)
                      +.-..++++|.+||+.|+++....-++.-    ...-++..|.|+....+.=.+-..+++=.+++|....    ..++|-
T Consensus       161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L  240 (288)
T KOG1586|consen  161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL  240 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence            33346789999999999999977666520    0134567788998888888888999999999996322    222221


Q ss_pred             hhHHH--hcChHHHHHHHHHHHhhhchhHHHHH
Q 019871          294 DLENL--RASEEFDVLLKRFDESFINENAINAI  324 (334)
Q Consensus       294 dl~~L--r~dp~F~~lL~~~~e~~~~~~ai~~~  324 (334)
                       ++.+  .+...|.+.+..|+..-.+++|--.|
T Consensus       241 -~~aieE~d~e~fte~vkefDsisrLD~W~tti  272 (288)
T KOG1586|consen  241 -LDAIEEQDIEKFTEVVKEFDSISRLDQWKTTI  272 (288)
T ss_pred             -HHHHhhhhHHHHHHHHHhhhccchHHHHHHHH
Confidence             1111  23357888999998888888886443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.00  E-value=1.5  Score=45.57  Aligned_cols=59  Identities=15%  Similarity=0.109  Sum_probs=52.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      ..+++++-++|+.+||++.|...++..|... ....++|+-.|+..++.+.++...+.|=
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            4899999999999999999999998888632 2568999999999999999998888873

The molecular function of this protein is uncertain.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.53  E-value=0.53  Score=49.77  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=79.3

Q ss_pred             hhchhhhhhhHHHHHHHHHHHHHhhccCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871          187 ERNSGVISNRVREIQMQNYMKKKEQKERRE---QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS  263 (334)
Q Consensus       187 ~~n~g~~~~~l~e~q~~~y~~~iel~~~~~---~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~  263 (334)
                      ||..|.++.     +..+|..++-+.+...   ..+.+|.+++++|...+|--.+..|++-.|...   .-+|-++.+|+
T Consensus       223 WR~~G~~~~-----A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t---~n~y~l~~i~a  294 (886)
T KOG4507|consen  223 WRIKGEPYQ-----AVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT---SNYYTLGNIYA  294 (886)
T ss_pred             HHHcCChhh-----hhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc---ccceeHHHHHH
Confidence            666676664     6678888776666533   345999999999999999999999999888874   35999999999


Q ss_pred             HCCChHHHHHHHHHHHHcCCCCHHHHhc
Q 019871          264 KLNQVKAGLSALEDALLAGYEDFKRVRT  291 (334)
Q Consensus       264 ~lG~~eeAl~~lekAIelgp~~~~~i~~  291 (334)
                      +++.+...+.+|..|.+.+|..-..+..
T Consensus       295 ml~~~N~S~~~ydha~k~~p~f~q~~~q  322 (886)
T KOG4507|consen  295 MLGEYNHSVLCYDHALQARPGFEQAIKQ  322 (886)
T ss_pred             HHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence            9999999999999999999985544444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.39  E-value=0.67  Score=44.50  Aligned_cols=65  Identities=18%  Similarity=0.128  Sum_probs=58.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++=.++.+.++++.|+.+-++.+.++|+++   .-+--+|.+|.++|.+.-|+.+++..++.-|++..
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp---~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDP---YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCCh---hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            555678899999999999999999999994   56889999999999999999999999999998655

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.07  E-value=1.8  Score=39.98  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=49.4

Q ss_pred             HHHHHHHHcCC-------HHHHHHHHHHHHhcCCC--CC-cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          220 REGLQLYRTGK-------YEVAREKFESVLGSKPT--PE-ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       220 nlG~al~~~g~-------yeeAl~~fekALeldP~--~~-e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .++-.+-.+|+       +..|++.|++|++....  .. ......|-+|..+.++|++++|+.+|.+.|...-.
T Consensus       123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            44444444554       77889999999966543  21 12578999999999999999999999999988554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.77  E-value=1.1  Score=39.98  Aligned_cols=64  Identities=13%  Similarity=-0.033  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ...+|.-+++.|++++|+++|.++.+..-........+.++-.+....+++.....++.+|-.+
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3488999999999999999999988765544333567888888888999999999999998554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.71  E-value=1.2  Score=44.81  Aligned_cols=65  Identities=22%  Similarity=0.235  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +-+.++...|..-.|++||+.|.+++..+|+.   ...-.++|.||.++.-++-+.+.+.-=+..-|+
T Consensus       153 dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey---~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  153 DQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY---IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh---hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence            34577888888889999999999999999997   456778999999999999988888777666664

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.65  E-value=1.2  Score=45.91  Aligned_cols=62  Identities=16%  Similarity=0.114  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh-------HHHHHHHHHHHHc
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV-------KAGLSALEDALLA  281 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~-------eeAl~~lekAIel  281 (334)
                      .|.+|..+.-+.+|++|..+|.+..+.+.-..  +...|-.||||..+|+.       ++|.+.++++-.+
T Consensus       308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk--a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  308 YFELAWCHMFQHDWEEAAEYFLRLLKESKWSK--AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHHHHchHHHHHHHHHHHHhccccHH--HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            35999999999999999999999999766542  56778999999999999       7777777777444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=90.47  E-value=0.43  Score=48.18  Aligned_cols=55  Identities=22%  Similarity=0.459  Sum_probs=40.8

Q ss_pred             cceeEeecC-----------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           95 YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        95 lgl~~~~~~-----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ||+.+..-.           ..+++|..|.+++.|+++| +++||+|+.+-      .+++.+...+..++..
T Consensus       236 lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vn------g~~i~~~~~~~~~l~~  301 (428)
T TIGR02037       236 LGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVN------GKPISSFADLRRAIGT  301 (428)
T ss_pred             CceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence            788875432           3589999999999999999 99999999983      3455555555554443

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=90.37  E-value=0.22  Score=52.43  Aligned_cols=48  Identities=31%  Similarity=0.650  Sum_probs=42.1

Q ss_pred             EEeec--CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccc
Q 019871           88 EVEIE--QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV  136 (334)
Q Consensus        88 ~v~l~--kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~  136 (334)
                      .|...  +-.||.++-+||=||||..|..|+.|++.| ++.||.|+.|-.+
T Consensus       410 ~VrF~KGdSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~v  459 (1027)
T KOG3580|consen  410 MVRFKKGDSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTV  459 (1027)
T ss_pred             eEEeecCCeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccc
Confidence            34444  789999999999999999999999999999 9999999998544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=90.11  E-value=2.2  Score=45.81  Aligned_cols=84  Identities=15%  Similarity=-0.018  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      +.+-..++++..|.....| .+|.++.++++.+.|-..|...++.-|..   ...|.-++..--+.|+.-.|-..|+++.
T Consensus       670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~---ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS---IPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC---chHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            3344456777788877776 99999999999999999999999999998   5799999999999999999999999999


Q ss_pred             HcCCCCHH
Q 019871          280 LAGYEDFK  287 (334)
Q Consensus       280 elgp~~~~  287 (334)
                      -.+|.+..
T Consensus       747 lkNPk~~~  754 (913)
T KOG0495|consen  747 LKNPKNAL  754 (913)
T ss_pred             hcCCCcch
Confidence            99998766

>PRK11186 carboxy-terminal protease; Provisional

Probab=90.05  E-value=0.35  Score=52.02  Aligned_cols=39  Identities=31%  Similarity=0.510  Sum_probs=33.6

Q ss_pred             cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|+.+.. .+|++.|..|.|||.|+|++.|++||+|++|-
T Consensus       246 IGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn  284 (667)
T PRK11186        246 IGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVG  284 (667)
T ss_pred             EEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEEC
Confidence            4778855 56789999999999999995599999999994

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=90.01  E-value=0.6  Score=35.49  Aligned_cols=43  Identities=23%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ||.|..|.+++.|+. + +++||+|+.+      ..+++.+...+..++..
T Consensus         9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~I------ng~~v~~~~~~~~~l~~   51 (79)
T cd00986           9 GVYVTSVVEGMPAAG-K-LKAGDHIIAV------DGKPFKEAEELIDYIQS   51 (79)
T ss_pred             CEEEEEECCCCchhh-C-CCCCCEEEEE------CCEECCCHHHHHHHHHh
Confidence            599999999999885 6 9999999998      34556666556665543

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.82  E-value=0.72  Score=46.38  Aligned_cols=64  Identities=14%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE-------ESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~-------e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      ..+|..+-+..+|+.|+-...+|.++-....       .+..++|.+|.+|.++|+.-.|.+++++|.++.
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            3899999999999999999999988754432       235789999999999999999999999997663

>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]

Probab=89.79  E-value=0.49  Score=52.30  Aligned_cols=50  Identities=32%  Similarity=0.645  Sum_probs=41.0

Q ss_pred             ceEEEeecCCcceeE----eecC---CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQPYGLKF----AKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~kPlgl~~----~~~~---~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +-..|+|+|--||-+    +++.   +-||||..|++||.||..|.+.+||.++.|-
T Consensus       933 ei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVd  989 (1629)
T KOG1892|consen  933 EIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVD  989 (1629)
T ss_pred             ceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeec
Confidence            568899998877433    4442   2299999999999999999999999999983

>TIGR00225 prc C-terminal peptidase (prc)

Probab=89.67  E-value=0.32  Score=47.58  Aligned_cols=38  Identities=29%  Similarity=0.515  Sum_probs=33.6

Q ss_pred             cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +|+.+.. .++++.|..|.+++.|+++| +++||+|+.+-
T Consensus        53 lG~~~~~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~In   90 (334)
T TIGR00225        53 IGIQVGM-DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKIN   90 (334)
T ss_pred             EEEEEEE-ECCEEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            6788855 46799999999999999999 99999999983

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.64  E-value=4.6  Score=39.24  Aligned_cols=100  Identities=14%  Similarity=0.038  Sum_probs=74.6

Q ss_pred             hhhHHHHH--HHHHHHHHhhcc-CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh----cCC-CCCcchHHHHHHHHHHHH
Q 019871          194 SNRVREIQ--MQNYMKKKEQKE-RREQDL-REGLQLYRTGKYEVAREKFESVLG----SKP-TPEESSVASYNVACCYSK  264 (334)
Q Consensus       194 ~~~l~e~q--~~~y~~~iel~~-~~~~~~-nlG~al~~~g~yeeAl~~fekALe----ldP-~~~e~~~a~yNlA~ay~~  264 (334)
                      ..+++|.+  +..|.+.++.+| .+.... .+|...++.|+.+.|-..|+++=+    ++- ++  .-..+-|.|.+|..
T Consensus       187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~--~~~V~~n~a~i~lg  264 (366)
T KOG2796|consen  187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG--KIMVLMNSAFLHLG  264 (366)
T ss_pred             HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch--hHHHHhhhhhheec
Confidence            34556655  567778888774 444444 999999999999999999995443    332 12  24788999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          265 LNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       265 lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      .+++-+|...+.+++..++.+...+ +++++-
T Consensus       265 ~nn~a~a~r~~~~i~~~D~~~~~a~-NnKALc  295 (366)
T KOG2796|consen  265 QNNFAEAHRFFTEILRMDPRNAVAN-NNKALC  295 (366)
T ss_pred             ccchHHHHHHHhhccccCCCchhhh-chHHHH
Confidence            9999999999999999999976543 444443

>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]

Probab=89.44  E-value=0.54  Score=45.24  Aligned_cols=59  Identities=32%  Similarity=0.643  Sum_probs=42.6

Q ss_pred             cCCcceeEeec------CCC-----ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHH
Q 019871           92 EQPYGLKFAKG------RDG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (334)
Q Consensus        92 ~kPlgl~~~~~------~~g-----~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai  154 (334)
                      +||||.-+-.+      ..|     ||||..++|||=|+-+|.+.|.|.|+.|-   |.| +-...+.+|-.++
T Consensus       170 ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVN---GIE-VaGKTLDQVTDMM  239 (358)
T KOG3606|consen  170 EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVN---GIE-VAGKTLDQVTDMM  239 (358)
T ss_pred             CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEc---CEE-eccccHHHHHHHH
Confidence            59999777322      123     89999999999999999999999999984   322 2234555555443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.23  E-value=0.54  Score=28.68  Aligned_cols=24  Identities=13%  Similarity=-0.011  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHH
Q 019871          253 VASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356777777777777777777665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]

Probab=89.03  E-value=0.4  Score=39.67  Aligned_cols=30  Identities=30%  Similarity=0.678  Sum_probs=28.2

Q ss_pred             CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus       103 ~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .|-||||..|..|+.|+.+| +..+|+|.-+
T Consensus        57 tD~GiYvT~V~eGsPA~~AG-LrihDKIlQv   86 (124)
T KOG3553|consen   57 TDKGIYVTRVSEGSPAEIAG-LRIHDKILQV   86 (124)
T ss_pred             CCccEEEEEeccCChhhhhc-ceecceEEEe
Confidence            46799999999999999999 9999999998

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.52  E-value=2.6  Score=41.16  Aligned_cols=75  Identities=23%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.|+..+.+++-.. ..+..+..+..+.+.|++.+|...|..++..+|++   ..+-..+|.||...|+.++|...|..
T Consensus       119 esqlr~~ld~~~~~-~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         119 ESQLRQFLDKVLPA-EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHHHHHhcCh-HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHh
Confidence            33444444443211 23445678888899999999999999999999998   46888889999999998776655543

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=88.28  E-value=0.57  Score=48.71  Aligned_cols=54  Identities=30%  Similarity=0.505  Sum_probs=42.1

Q ss_pred             hhhhccceEEEeec---CC---cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           79 EQEEKYEEYEVEIE---QP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        79 ~~~~~~~~~~v~l~---kP---lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+..-.+.|-+++.   .|   ||+++. .+.|...|..|.+||.|.++| |.+||+|+++-
T Consensus       431 ~l~~~l~~~gL~~~~~~~~~~~LGl~v~-~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~  490 (558)
T COG3975         431 PLNPLLERFGLTFTPKPREAYYLGLKVK-SEGGHEKITFVFPGGPAYKAG-LSPGDKIVAIN  490 (558)
T ss_pred             ChhhhhhhcceEEEecCCCCcccceEec-ccCCeeEEEecCCCChhHhcc-CCCccEEEEEc
Confidence            44555555665554   33   788883 367899999999999999999 99999999984

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.06  E-value=1.3  Score=29.55  Aligned_cols=29  Identities=17%  Similarity=0.269  Sum_probs=15.6

Q ss_pred             HHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 019871          219 LREGLQLYRTGKYEVAREK--FESVLGSKPT  247 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~--fekALeldP~  247 (334)
                      +.+|..++.+|+|++|++.  |.-+..++|.
T Consensus         5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3455566666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.86  E-value=1.5  Score=29.21  Aligned_cols=33  Identities=6%  Similarity=-0.033  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHCCChHHHHHH--HHHHHHcCCCC
Q 019871          253 VASYNVACCYSKLNQVKAGLSA--LEDALLAGYED  285 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~--lekAIelgp~~  285 (334)
                      ..||.+|+++...|++++|++.  |+-+..++++|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4689999999999999999999  55887777754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=87.26  E-value=1.4  Score=47.83  Aligned_cols=66  Identities=11%  Similarity=0.021  Sum_probs=55.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ..+|.++...|++++|+..|+++++......   +...++..+|.+|..+|+.++|...+.+|+++...
T Consensus       695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            4788899999999999999999998643221   12467889999999999999999999999998654

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=87.03  E-value=0.64  Score=47.09  Aligned_cols=49  Identities=20%  Similarity=0.382  Sum_probs=38.8

Q ss_pred             ceEEEeecC-C--cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ-P--YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k-P--lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+..+..- .  +|+.+...+++++.|.+..+++-|+|+| |++||.|+.|-
T Consensus        89 ~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~Id  140 (406)
T COG0793          89 AEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKID  140 (406)
T ss_pred             HHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEEC
Confidence            345555552 2  3477766555999999999999999999 99999999984

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.91  E-value=2.6  Score=38.96  Aligned_cols=94  Identities=13%  Similarity=0.156  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLEN  297 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~  297 (334)
                      +.++-.+++.|++++|+..+..++..--+..-.+.+-.++|.+...+|++|+|+..|+.--+-++.... .++.|-    
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi----  168 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDI----  168 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhH----
Confidence            477888999999999999999999754433223467789999999999999999999877666555433 334432    


Q ss_pred             HhcChHHHHHHHHHHHhhh
Q 019871          298 LRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       298 Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |....+=+++...|.+.+.
T Consensus       169 ll~kg~k~~Ar~ay~kAl~  187 (207)
T COG2976         169 LLAKGDKQEARAAYEKALE  187 (207)
T ss_pred             HHHcCchHHHHHHHHHHHH
Confidence            2222344556666666553

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=86.76  E-value=1  Score=45.48  Aligned_cols=44  Identities=20%  Similarity=0.405  Sum_probs=35.4

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      .+++|..|.+++.|+++| +++||+|+.+-      .+++.+......++.
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~In------g~~V~s~~d~~~~l~  405 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVN------QQPVSSVAELRKVLD  405 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHH
Confidence            589999999999999999 99999999983      455566555555554

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=86.60  E-value=1.1  Score=45.99  Aligned_cols=46  Identities=17%  Similarity=0.390  Sum_probs=35.0

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..|++|..|.+++.|+++| +++||+|+.+-      ..++.++..+...+..
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~In------G~~V~s~~dl~~~l~~  334 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLN------GKPLNSFAELRSRIAT  334 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence            4589999999999999999 99999999983      3344555555554543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=86.30  E-value=1.5  Score=41.66  Aligned_cols=50  Identities=22%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      +.+..-|.+++++.|+... ++.+|.-..+.|+++.|.+.|++.++++|++
T Consensus        12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976          12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            4456788899999988644 5699999999999999999999999999997

>PRK10942 serine endoprotease; Provisional

Probab=86.06  E-value=1.2  Score=45.84  Aligned_cols=45  Identities=20%  Similarity=0.426  Sum_probs=34.3

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      ..|++|..|.+++.|+++| ++.||+|+.+-      ..++.++..+..++.
T Consensus       310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~In------G~~V~s~~dl~~~l~  354 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLN------GKPISSFAALRAQVG  354 (473)
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHH
Confidence            4589999999999999999 99999999983      234455554444443

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=85.83  E-value=1  Score=44.61  Aligned_cols=44  Identities=25%  Similarity=0.296  Sum_probs=34.5

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      .+++|..|.+++.|+++| +++||+|+.+-      .+++.+...+..++.
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~In------g~~V~s~~dl~~~l~  321 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYD------GKDVIGAEELMDRIA  321 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEEC------CEEcCCHHHHHHHHH
Confidence            589999999999999999 99999999982      345555555555444

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=85.64  E-value=0.86  Score=45.71  Aligned_cols=28  Identities=43%  Similarity=0.709  Sum_probs=26.4

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeec
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++.|..|.+++.|+++| |++||+|+.|-
T Consensus       103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~In  130 (389)
T PLN00049        103 GLVVVAPAPGGPAARAG-IRPGDVILAID  130 (389)
T ss_pred             cEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            79999999999999999 99999999983

>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]

Probab=85.63  E-value=1.2  Score=39.55  Aligned_cols=49  Identities=37%  Similarity=0.663  Sum_probs=37.9

Q ss_pred             EEEeecCC-cceeEee--c--CCCceEEEeeCCCCccccccccccCcEeeeecc
Q 019871           87 YEVEIEQP-YGLKFAK--G--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA  135 (334)
Q Consensus        87 ~~v~l~kP-lgl~~~~--~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa  135 (334)
                      -.|+|+|- -||-|.-  +  -+--|||..|-|||.||+-|.++-||.++.|-.
T Consensus        92 rvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvng  145 (207)
T KOG3550|consen   92 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG  145 (207)
T ss_pred             ceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecc
Confidence            57888853 4555522  2  233799999999999999999999999999843

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=85.35  E-value=0.45  Score=47.27  Aligned_cols=66  Identities=17%  Similarity=0.092  Sum_probs=60.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      +.+.+..+.+.|..|+.....+++.++..   ..+||-+++.|..+.++++|+++++.|....|++..+
T Consensus       280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~---tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i  345 (372)
T KOG0546|consen  280 NLAAVGLKVKGRGGARFRTNEALRDERSK---TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI  345 (372)
T ss_pred             chHHhcccccCCCcceeccccccccChhh---CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence            78888999999999999999999988876   5799999999999999999999999999999997653

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.33  E-value=1.8  Score=40.06  Aligned_cols=45  Identities=11%  Similarity=0.022  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          234 AREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       234 Al~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      |..+|.+|+.+.|.+   ...|+++|..+...|+.=+|+-+|-|++-.
T Consensus         1 A~~~Y~~A~~l~P~~---G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~   45 (278)
T PF10373_consen    1 AERYYRKAIRLLPSN---GNPYNQLAVLASYQGDDLDAVYYYIRSLAV   45 (278)
T ss_dssp             HHHHHHHHHHH-TTB---SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHhCCCC---CCcccchhhhhccccchHHHHHHHHHHHhc
Confidence            556666666666666   356666666666666666666666666543

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.15  E-value=3  Score=42.73  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=25.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      .+..+|+++++.+-|+..-.+.|-++|-+   ..-|...|.|+..+.+|.+|-...--|
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~---frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSY---FRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444   233444444444444444444444333

>PRK04841 transcriptional regulator MalT; Provisional

Probab=85.02  E-value=3  Score=45.40  Aligned_cols=62  Identities=15%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e--~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      .+|..+...|++++|...++++++..|....  ...++.++|.++...|++++|...+++|+..
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~  520 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM  520 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6677888899999999999999886554321  1346678888888899999999999988875

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=85.00  E-value=22  Score=31.70  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=36.5

Q ss_pred             hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871          211 QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV  268 (334)
Q Consensus       211 l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~  268 (334)
                      +.|+..+. .-.|..+...|+|.+|+..++.+.+..|..   +.+---+|+|+..+|+.
T Consensus        39 LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~---p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   39 LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF---PYAKALLALCLYALGDP   94 (160)
T ss_pred             hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHHcCCh
Confidence            45655443 467777777777777777777777766666   34555567777766664

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.72  E-value=3.8  Score=40.46  Aligned_cols=64  Identities=20%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             hccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          211 QKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       211 l~~~-~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      ..|+ .+..-.+|.+||...+|.+|-.||++.-.+.|+..   ..-+.-|-.+.+.+.+.+|+..+..
T Consensus        39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~---qYrlY~AQSLY~A~i~ADALrV~~~  103 (459)
T KOG4340|consen   39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE---QYRLYQAQSLYKACIYADALRVAFL  103 (459)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH---HHHHHHHHHHHHhcccHHHHHHHHH
Confidence            4453 33344788888888888888888888888888752   2223335566677777777766544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.47  E-value=19  Score=35.19  Aligned_cols=45  Identities=18%  Similarity=0.143  Sum_probs=35.8

Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       237 ~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+++.+..||++   ..+-+.+|..|...|+.++|++.|-.-+..+-.
T Consensus       224 ~l~~~~aadPdd---~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         224 DLQRRLAADPDD---VEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            345566678887   568899999999999999999999887777544

>PRK10898 serine endoprotease; Provisional

Probab=84.19  E-value=1.9  Score=42.71  Aligned_cols=28  Identities=32%  Similarity=0.687  Sum_probs=26.9

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeee
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .|++|..|.+++.|+++| +++||+|+.+
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~I  306 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISV  306 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence            699999999999999999 9999999998

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=83.23  E-value=21  Score=41.69  Aligned_cols=97  Identities=15%  Similarity=-0.001  Sum_probs=69.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC--CHHHHhcChhhHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE--DFKRVRTDPDLEN  297 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~--~~~~i~~Dpdl~~  297 (334)
                      .+.-.|.+-+++++|.+.|++.++..-+-   ...|...|..+...++-++|...|++|++.=|.  ..+.+.+-..|+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~---~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQT---RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhcch---hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            78888999999999999999999877654   578999999999999999999999999999887  2223333222222


Q ss_pred             HhcCh-----HHHHHHHHHHHhhhchh
Q 019871          298 LRASE-----EFDVLLKRFDESFINEN  319 (334)
Q Consensus       298 Lr~dp-----~F~~lL~~~~e~~~~~~  319 (334)
                      =..|+     -|..+|..|-+....++
T Consensus      1612 k~GDaeRGRtlfEgll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWS 1638 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCccchhHHH
Confidence            22221     26666666644444333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=83.18  E-value=19  Score=34.33  Aligned_cols=106  Identities=20%  Similarity=0.193  Sum_probs=61.9

Q ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH--HHH-hcChhh
Q 019871          220 REGLQLYR-TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF--KRV-RTDPDL  295 (334)
Q Consensus       220 nlG~al~~-~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~--~~i-~~Dpdl  295 (334)
                      ..|..-+. .++.+-|...|+.+++..|.+   ...|..=...+..+|+.+.|-..|++|+..=+...  +.+ .+=-+|
T Consensus        40 ~~A~~E~~~~~d~~~A~~Ife~glk~f~~~---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f  116 (280)
T PF05843_consen   40 AYALMEYYCNKDPKRARKIFERGLKKFPSD---PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF  116 (280)
T ss_dssp             HHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            45555456 566666999999999999988   45666666777889999999999999988755533  111 111112


Q ss_pred             HHHhc-ChHHHHHHHHHHHhhhchhHHHHHHHhh
Q 019871          296 ENLRA-SEEFDVLLKRFDESFINENAINAIKSLF  328 (334)
Q Consensus       296 ~~Lr~-dp~F~~lL~~~~e~~~~~~ai~~~k~~~  328 (334)
                      +.-.. ......+.+++.+.+-.++-+..+.+-+
T Consensus       117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen  117 ESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            21121 1233444455555555555555554433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=82.49  E-value=11  Score=38.18  Aligned_cols=68  Identities=19%  Similarity=0.061  Sum_probs=51.7

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      .+-+++..=++..++.++..|++   +..++-+|..|.+.+.|.+|-.+|+.||+..|+...+.+---.|+
T Consensus       305 l~~~d~~~l~k~~e~~l~~h~~~---p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~  372 (400)
T COG3071         305 LRPGDPEPLIKAAEKWLKQHPED---PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD  372 (400)
T ss_pred             cCCCCchHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            34556666666666666666776   579999999999999999999999999999998666443333333

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=82.33  E-value=2.1  Score=46.15  Aligned_cols=55  Identities=25%  Similarity=0.504  Sum_probs=44.1

Q ss_pred             hhhhccceEEEeec---CCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeee
Q 019871           79 EQEEKYEEYEVEIE---QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        79 ~~~~~~~~~~v~l~---kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .-.++...|.|+|+   |=.|..+--++.+  ..||-.+.+.|-|.|.|.+.|||.|+.+
T Consensus       892 r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eI  951 (984)
T KOG3209|consen  892 RMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEI  951 (984)
T ss_pred             cccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEe
Confidence            34566788999999   4555666333333  8999999999999999999999999997

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=82.16  E-value=36  Score=34.35  Aligned_cols=68  Identities=15%  Similarity=0.175  Sum_probs=52.2

Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH---------CCChHHHHHHHHHHHHcCCCC
Q 019871          218 DLREGLQLYR---TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK---------LNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       218 ~~nlG~al~~---~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~---------lG~~eeAl~~lekAIelgp~~  285 (334)
                      -+..|.++-+   .|+.++|+..+..++..+....  +..+.-.|.+|-.         ....++|+.+|.++.+++|+.
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPD--PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            3589999999   9999999999999765443331  5677777777642         235899999999999999875


Q ss_pred             HH
Q 019871          286 FK  287 (334)
Q Consensus       286 ~~  287 (334)
                      +.
T Consensus       260 Y~  261 (374)
T PF13281_consen  260 YS  261 (374)
T ss_pred             cc
Confidence            53

>PRK10139 serine endoprotease; Provisional

Probab=81.70  E-value=0.65  Score=47.65  Aligned_cols=45  Identities=18%  Similarity=0.261  Sum_probs=35.3

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      .+++|..|.+++.|+++| +++||+|+.+-      .+++.++.....++..
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~In------g~~v~~~~~~~~~l~~  434 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVN------RDRVNSIAEMRKVLAA  434 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence            479999999999999999 99999999983      3455555555555544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=81.39  E-value=9.3  Score=36.27  Aligned_cols=56  Identities=14%  Similarity=0.229  Sum_probs=46.6

Q ss_pred             HHcCCHHHHHHHHHHHHhcC----CCCC-cchHHHHHHHHHHHHCC-ChHHHHHHHHHHHHc
Q 019871          226 YRTGKYEVAREKFESVLGSK----PTPE-ESSVASYNVACCYSKLN-QVKAGLSALEDALLA  281 (334)
Q Consensus       226 ~~~g~yeeAl~~fekALeld----P~~~-e~~~a~yNlA~ay~~lG-~~eeAl~~lekAIel  281 (334)
                      -+.|+++-|...|.|+=.+.    |+.. +-+..+||.|......+ ++++|+.++++|+++
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            46899999999999987654    3321 12578999999999999 999999999999988

It is also involved in sporulation [].

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.32  E-value=1.9  Score=44.96  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=55.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh---------cCCC--C----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLG---------SKPT--P----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALe---------ldP~--~----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      |+|-++|++|.|.-++..|.+|+.         +.|.  .    .......||.|..|...|+.-+|.++|.+|+..--.
T Consensus       288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence            999999999999999999999996         1121  1    012468999999999999999999999999876444


Q ss_pred             CHH
Q 019871          285 DFK  287 (334)
Q Consensus       285 ~~~  287 (334)
                      ++.
T Consensus       368 nPr  370 (696)
T KOG2471|consen  368 NPR  370 (696)
T ss_pred             CcH
Confidence            443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=81.29  E-value=58  Score=32.89  Aligned_cols=104  Identities=17%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHH---CCChHHHHHHHHHHHHcCCCCHHHHhcC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP--EESSVASYNVACCYSK---LNQVKAGLSALEDALLAGYEDFKRVRTD  292 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~--~e~~~a~yNlA~ay~~---lG~~eeAl~~lekAIelgp~~~~~i~~D  292 (334)
                      ..++=..|-...+|+.-++..+..-.+ |+.  +......+..|.++-+   .|+.++|+..+..++.....      .+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~------~~  216 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN------PD  216 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC------CC
Confidence            348888888999999999988876655 221  1124678899999999   99999999999997665432      22


Q ss_pred             hhhHHHhcChHHHHHHHH--HHHhhhchhHHHHHHHhhc
Q 019871          293 PDLENLRASEEFDVLLKR--FDESFINENAINAIKSLFG  329 (334)
Q Consensus       293 pdl~~Lr~dp~F~~lL~~--~~e~~~~~~ai~~~k~~~~  329 (334)
                      |+.-.|.. --|+++...  +...-..++||++|++.|.
T Consensus       217 ~d~~gL~G-RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  217 PDTLGLLG-RIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             hHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            33323321 122222221  2222236677777777665

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=81.08  E-value=2.8  Score=42.84  Aligned_cols=46  Identities=20%  Similarity=0.437  Sum_probs=36.4

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~  158 (334)
                      ++.|..|.+++.|+++| +++||+|+.+      ..+++.+...+...+..+.
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~I------ng~~V~s~~dl~~~l~~~~  267 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKV------DGQPLTQWQTFVTLVRDNP  267 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEE------CCEEcCCHHHHHHHHHhCC
Confidence            58999999999999999 9999999998      2456666666666665543

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=80.14  E-value=1.1  Score=48.04  Aligned_cols=39  Identities=28%  Similarity=0.735  Sum_probs=33.0

Q ss_pred             CcceeEeec-CCC-ceEEEeeCCCCccccccccccCcEeeee
Q 019871           94 PYGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        94 Plgl~~~~~-~~g-~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      |+-..+--+ .+| +|||++|.||+.|++.| ++-||.+..|
T Consensus       549 pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEV  589 (1283)
T KOG3542|consen  549 PLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEV  589 (1283)
T ss_pred             CceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhc
Confidence            676777444 566 99999999999999999 9999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-08
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-08
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	4e-08
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	9e-08
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-07
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-07
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	2e-07
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-07
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-07
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	3e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	5e-07
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	6e-07
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	8e-07
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	8e-07
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	8e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	8e-07
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	9e-07
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-06
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-06
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-06
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-06
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	2e-06
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-06
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-06
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	2e-06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-06
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-06
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-06
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	3e-06
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-05
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	3e-06
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	4e-06
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	5e-06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	8e-05
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	5e-06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	7e-06
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	7e-06
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	7e-06
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	8e-06
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	8e-06
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	8e-06
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-05
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-05
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-05
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	1e-05
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-05
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-05
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-05
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-05
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	4e-05
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	1e-05
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-05
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-05
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	1e-05
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	2e-05
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-05
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	2e-05
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-05
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-05
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	2e-05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-05
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-05
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	3e-05
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	3e-05
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	4e-05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	4e-05
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	4e-05
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	4e-05
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-05
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	4e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-04
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	5e-05
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	5e-05
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	6e-05
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	6e-05
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	6e-05
2awx_A	105	Synapse associated protein 97; membrane protein, s	6e-05
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	6e-05
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	7e-05
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	9e-05
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	9e-05
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	1e-04
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-04
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	1e-04
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	1e-04
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-04
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	1e-04
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-04
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-04
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	7e-04
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-04
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-04
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	2e-04
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	2e-04
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-04
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-04
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-04
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-04
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-04
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-04
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-04
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	4e-04
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	4e-04
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	5e-04
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	6e-04
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	6e-04
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	7e-04
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	8e-04
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	8e-04
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	8e-04
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	8e-04
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	9e-04
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 9e-09
 Identities = 54/419 (12%), Positives = 109/419 (26%), Gaps = 132/419 (31%)

Query: 11  LYSPPPLPRTNQNPFLF----SQNSHVWFKKNCFLSASGCSCNTLLVKPSVFVAKASETE 66
           + S   +  T     LF    S+   +  K   F+         +L     F+    +TE
Sbjct: 55  IMSKDAVSGTL---RLFWTLLSKQEEMVQK---FV-------EEVLRINYKFLMSPIKTE 101

Query: 67  A-QASPEAESGSEEQE------EKYEEYEVEIEQPY-----GLKFAKGRDGGTYIDAIAP 114
             Q S       E+++      + + +Y V   QPY      L   +       ID    
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLID---- 156

Query: 115 GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY--TIRQRVGP--LLMKMQKRYG 170
                  G+   G   +A       ++    ++   ++   ++    P  +L  +QK   
Sbjct: 157 -------GVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLY 207

Query: 171 KMEQTGELSEKEIIRAERNSGVISNRVREIQMQ--------------------------- 203
           +++             +     I   +R +                              
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 204 -----------NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPT--PEE 250
                      +++                L        E  +      L  +P   P E
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDE-VKSLLLKYLDCRPQDLPRE 321

Query: 251 ---------SSVAS--------------YNVACCYSKLNQV-KAGLSALEDALL-AGYED 285
                    S +A                N      KL  + ++ L+ LE A     ++ 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVN----CDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 286 F----KRVRTDPDL-----ENLRASEEFDVLLKRFDESFINENAINAIKSLFGL-LDKK 334
                        L      ++  S+   V+ K    S + +    +  S+  + L+ K
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 75  SGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           S   E        EVE+     GL F    G+  G  +  I PGG AD+ G  Q GD +L
Sbjct: 5   SSGPETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHIL 64

Query: 132 A 132
            
Sbjct: 65  K 65

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 64  ETEAQASPEAESGSEEQE-EKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGS 117
                 S   + G+E    +  + Y VE+E    G  F    GR+     Y+  +A  G 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGP 61

Query: 118 ADKTGMFQVGDKVLA 132
           A+++G  ++GD++L 
Sbjct: 62  AERSGKMRIGDEILE 76

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 81  EEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               E++ V++     +  GL      + G  I  +  G   +     Q GD +  
Sbjct: 4   RNSLEKFNVDLMKKAGKELGLSL-SPNEIGCTIADLIQGQYPEIDSKLQRGDIITK 58

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVG 127
             SGS  Q+  ++ + V++E    G  F    GR+     Y+  +A  G A + G  +VG
Sbjct: 1   GSSGSSGQD--FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVG 58

Query: 128 DKVLA 132
           D+++ 
Sbjct: 59  DQIIE 63

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD----GGTYIDAIAPGGSADKTGMFQ 125
             SGS  Q      + VE+     G       GRD        +  +   G A + G  +
Sbjct: 1   GSSGSSGQAS--GHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLE 58

Query: 126 VGDKVLA 132
           VGD VL 
Sbjct: 59  VGDLVLH 65

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI--EQPYGLKFA---------KGRDGGTYIDAIAPGGS 117
            S  +  GS+     +E Y VE+  +    L             G   G Y+ ++ PG +
Sbjct: 1   GSSGSSGGSDSSL--FETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSA 58

Query: 118 ADKTGMFQVGDKVLA 132
           A   G  QV DK++A
Sbjct: 59  AYHNGHIQVNDKIVA 73

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMF 124
            SPE      E++   E   + I       G     G DG G +I  I  GG AD +G  
Sbjct: 1   GSPEFLG---EEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGEL 57

Query: 125 QVGDKVLA 132
           + GD++L+
Sbjct: 58  RKGDQILS 65

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSA 118
            S  +   +   +    E E+ +   P GL F             D G Y+  I   G+A
Sbjct: 1   GSSGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAA 60

Query: 119 DKTGMFQVGDKVLA 132
              G  Q GDK+L+
Sbjct: 61  ALDGRLQEGDKILS 74

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 76  GSEEQEEKYEE-YEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           G             ++ E    +P G+           +  I  GG   + G   VGD++
Sbjct: 2   GHHHHHHSGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEI 61

Query: 131 LA 132
           L 
Sbjct: 62  LE 63

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E++ V++     +  GL  +   + G  I  +  G   +     Q GD +  
Sbjct: 2   EKFNVDLMKKAGKELGLSLS-PNEIGCTIADLIQGQYPEIDSKLQRGDIITK 52

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 85  EEYEVEI---EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E EV +   E   GL       G  +I  I  GG  D      VGD + +
Sbjct: 5   IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIES 55

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMF 124
            + E    S           V IE     P G    +       I  I  GG+A+K+G+ 
Sbjct: 9   ITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-RNEMDSVIISRIVKGGAAEKSGLL 67

Query: 125 QVGDKVLA 132
             GD+VL 
Sbjct: 68  HEGDEVLE 75

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 75  SGSEEQEEKYEEYEVEIEQPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVG 127
            GS+ +E   E   V +++  G+         A     G Y+ ++  GG+AD  G    G
Sbjct: 3   LGSDHKEP--EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAG 60

Query: 128 DKVLA 132
           D++L+
Sbjct: 61  DQLLS 65

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 54  KPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRD--------- 104
           KP + ++   +    +S        E   +    +   E+P G     G           
Sbjct: 3   KPHIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLE 62

Query: 105 --GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              G +I  + PGG A  TG+  V D+VL 
Sbjct: 63  KVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 84  YEEYEVEIE----QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
            +   + ++    +  GL     R+  G ++  I  GG AD  G    GD++L 
Sbjct: 3   SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILM 56

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 70  SPEAESGSEEQEEKYEEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGM 123
           S   E    E        +V +  E   GL  +    K       I  I PG  AD+ G 
Sbjct: 12  SGHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG 71

Query: 124 FQVGDKVLA 132
             VGD +LA
Sbjct: 72  LHVGDAILA 80

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 76  GSEEQEEKYEEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           GS      Y+E +V +     G  F             I A+   GSAD+ G    GD++
Sbjct: 1   GSS-GSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDEL 59

Query: 131 LA 132
           + 
Sbjct: 60  VY 61

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 73  AESGSEEQEEKYEEYEVEIE-QPYGLKFA----------KGRDGGTYIDAIAPGGSADKT 121
           + S  E    + EE  + I  Q  GL  +          KG D G +I  ++  G A + 
Sbjct: 3   SGSSGEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA 62

Query: 122 GMFQVGDKVLA 132
           G+ +VGDK+L 
Sbjct: 63  GV-RVGDKLLE 72

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIE-QPYGLKF--AKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E  +EI     GL      G D   G   I  +   G+A K G    GD++L 
Sbjct: 4   CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILE 57

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD-----GGTYIDAIA 113
           +S   A ++  A   S E   +     V +E    GL F    G+          I+ I 
Sbjct: 6   SSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIF 65

Query: 114 PGGSADKTGMFQVGDKVLA 132
            G +++++   Q GD++L 
Sbjct: 66  KGAASEQSETVQPGDEILQ 84

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 85  EEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               VE+     GL F     K ++   YI  + PGG AD+ G  + GD++L+
Sbjct: 5   SSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLS 57

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD---GGTYIDAIAPGGSADKTG 122
            S  +   +       +E  +EI     GL      G+D       I  +   G+A + G
Sbjct: 1   GSSGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDG 60

Query: 123 MFQVGDKVLA 132
               GD++L 
Sbjct: 61  RLWAGDQILE 70

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 85  EEYEVEIE-QPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             Y VE++     L       +       I ++  GG A++TG   +GD++LA
Sbjct: 5   IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILA 57

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 44  SGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--- 99
           S           +    + +E     +  AE   E++ E+ E + VE+E    GL     
Sbjct: 39  STAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISII 98

Query: 100 -------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                        G ++  +  GG+A + G  QV D ++ 
Sbjct: 99  GMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 138

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 85  EEYEVEIEQ-PYGLKF--------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++VE+ +   GL           K    G ++ +I    + +  G  Q+GD+++A
Sbjct: 4   ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 12/70 (17%)

Query: 75  SGSEEQEEKYEEYEVEIE---QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTG 122
           S        +  Y VE+        L             G   G Y+ ++ PG +A   G
Sbjct: 2   SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61

Query: 123 MFQVGDKVLA 132
             +  DK+L 
Sbjct: 62  RIEPNDKILR 71

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 67  AQASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGM 123
           +  S   E   +    + E   V+++   +P G+    G  GG Y+  +  G  A + G+
Sbjct: 2   SSGSSGGERRKDRPYVE-EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGL 60

Query: 124 FQVGDKVLA 132
            + GD++L 
Sbjct: 61  -EYGDQLLE 68

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 76  GSEEQEEKYEEYEVEIEQPYGLKFA-KGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           GS   E       +   +  GL F  K R       I  +  GG+A+++G+ Q GD +LA
Sbjct: 1   GSHMIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 60

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 75  SGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKV 130
           S      +  E  ++ +       G     G DG G ++  I  GG AD +G  + GD++
Sbjct: 5   SSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRI 64

Query: 131 LA 132
           L+
Sbjct: 65  LS 66

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 84  YEEYEVEIE-QPYGLKFA---------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           ++  E+ +E    GL F+            D G +I  I PGG+A   G   V D VL 
Sbjct: 3   FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 76  GSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVL 131
           G  E++   E   + I       G     G  G G +I  I  GG AD +G  + GD++L
Sbjct: 2   GLGEEDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQIL 61

Query: 132 A 132
           +
Sbjct: 62  S 62

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 55  PSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRDG-GTYID 110
                A    +  + SP A+    E++   E   + I       G     G DG G +I 
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFIS 336

Query: 111 AIAPGGSADKTGMFQVGDKVLA 132
            I  GG AD +G  + GD++L+
Sbjct: 337 FILAGGPADLSGELRKGDQILS 358

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSAD 119
           + EA       E + E  E+ +E      G   A G D          +I  I PGG+A 
Sbjct: 44  TLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAA 103

Query: 120 KTGMFQVGDKVL 131
           + G  +V D +L
Sbjct: 104 QDGRLRVNDSIL 115

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 81  EEKYEEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
           +    E E+ +   P GL F             D G Y+  I   G+A   G  Q GDK+
Sbjct: 3   DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 62

Query: 131 LA 132
           L+
Sbjct: 63  LS 64

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 78  EEQEEKYEEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           ++ +      +V +  E   GL  +    K       I  I PG  AD+ G   VGD +L
Sbjct: 2   KKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAIL 61

Query: 132 A 132
           A
Sbjct: 62  A 62

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 85  EEYEVEIE-QPYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           EE  + I  Q  GL  +          KG D G +I  ++  G A + G+ +VGDK+L 
Sbjct: 3   EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGV-RVGDKLLE 60

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIE----QPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  EV +       +G++                I  I     A++ G+ Q+GD+V+A
Sbjct: 6   ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 77  SEEQEEKYEEYEVEIEQP----YGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGD 128
           +E        + V++ +      G+  +            I  I  G  A +TG  ++GD
Sbjct: 99  AESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGD 158

Query: 129 KVLA 132
           K+LA
Sbjct: 159 KLLA 162

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIEQP--YGLKF-------AKGRDGGTYIDAI 112
           +S +    + +  S  ++  +  +   ++IE+P   GL F               ++  +
Sbjct: 2   SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDV 61

Query: 113 APGGSADKTGMFQVGDKVLA 132
            PG  AD+    +  D++LA
Sbjct: 62  QPGSVADRDQRLKENDQILA 81

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 13/70 (18%)

Query: 76  GSEEQEEKYEEYEVEIE--QPYGLKF-----------AKGRDGGTYIDAIAPGGSADKTG 122
           GS       +  +V I   +  G  F                    I  I  G  AD+  
Sbjct: 1   GSSGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCA 60

Query: 123 MFQVGDKVLA 132
             +VGD++LA
Sbjct: 61  KLKVGDRILA 70

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 15/80 (18%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAI 112
            +S           +  +   VE+  E    L      GR             G +I  +
Sbjct: 7   HSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHV 66

Query: 113 APGGSADKTGMFQVGDKVLA 132
                A K G  + GD+++ 
Sbjct: 67  LEDSPAGKNGTLKPGDRIVE 86

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKT 121
                 GS   ++  +   ++++    GL F         G     Y+  I P G+A + 
Sbjct: 15  ENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD 74

Query: 122 GMFQVGDKVLA 132
           G  + GD+++ 
Sbjct: 75  GRLKAGDRLIE 85

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 79  EQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKV 130
             ++  +   ++++    GL F         G     Y+  I P G+A + G  + GD++
Sbjct: 5   NTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRL 64

Query: 131 LA 132
           + 
Sbjct: 65  IE 66

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI---EQPYGLKFAKGRD---GGTYIDAIAPGGSADKTG 122
            S  A +    ++   ++  +     E    L    G D   G   + A+  GG+A++ G
Sbjct: 1   GSEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHG 60

Query: 123 MFQVGDKVLA 132
               GD+++A
Sbjct: 61  GVVKGDEIMA 70

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIEQ-PYGLKF--AKGRDGGT---YIDAIAPGG 116
           S +   A  + +      +   E + +E+E+   GL    A  +D      ++  I P G
Sbjct: 3   SGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEG 62

Query: 117 SADKTGMFQVGDKVLA 132
            A   G  ++GD++L 
Sbjct: 63  PAAADGRMRIGDELLE 78

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 86  EYEVEIE-QPYGLKF----AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++ +  +  G  F            YI  I P G+AD  G  + GD++++
Sbjct: 3   EQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELIS 54

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 81  EEKYEEYEVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           E K +    ++     G  F    G +      I ++   G A   G  + GD +++
Sbjct: 14  ELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 70

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 72  EAESGSEEQEEKYEEYEVEIEQP---YGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQ 125
              SG+  ++       +  ++     G   A G D       +  + P G A + G  Q
Sbjct: 3   SGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQ 62

Query: 126 VGDKVLA 132
            G++VL+
Sbjct: 63  KGNEVLS 69

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 89  VEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + +    +P G    K    G   +  I  GG+AD++G+  VGD++  
Sbjct: 8   IRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELRE 55

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 85  EEYEVEIE-QPYGLKF--------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              EV +  +     F         + +     I ++ PGG AD+ G  + GD++L+
Sbjct: 3   RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLS 59

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE-QPYGLKF--AKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + +EVE+      L      G +     GG Y+ A+ P G+A+  G    GD+VLA
Sbjct: 5   DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 60

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEI--EQPYGLKF-------AKGRDGGTYIDAIAPGGSA 118
            +S           +   E  V I  +    L          +  D   Y+ ++ PGG  
Sbjct: 7   HSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVI 66

Query: 119 DKTGMFQVGDKVLA 132
            + G  + GD +L 
Sbjct: 67  SRDGRIKTGDILLN 80

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 77  SEEQEEKYEEYEVEI--EQPYGLKFA-KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                 + E++ V++  +    L  +    + G  I  +  G   +     Q GD +  
Sbjct: 105 FRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITK 163

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           ++  +E++   +P G+    G++     G  I  + P G        ++ D +  
Sbjct: 18  KKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICD 72

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIE-----QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  +V +      +  G+K  +  D  G +I  +  GG A + G     D+VLA
Sbjct: 3   EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLA 56

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGG 116
           ++    A P A      +    +   V +        G+    GR+      I  I  G 
Sbjct: 55  AQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGL 114

Query: 117 SADKTGMFQVGDKVLA 132
           +AD+T    VGD +L+
Sbjct: 115 AADQTEALFVGDAILS 130

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 68  QASPEAESGSE-EQEEKYEEYEVEIE--QPYGLKF-------AKGRDGGTYIDAIAPGGS 117
             S   + G+E    +      VE++      L         +   D   +I  + P G 
Sbjct: 6   HHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGV 65

Query: 118 ADKTGMFQVGDKVLA 132
           A +T   +VGD+++ 
Sbjct: 66  AAQTQKLRVGDRIVT 80

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 65  TEAQASPEAESGSEEQE-EKYEEYEVEIEQ-PYGLKF--AKGR-------DGGTYIDAIA 113
                S   + G+E    +     E+++ + P GL F  A G        D   Y+  I 
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 62

Query: 114 PGGSADKTGMFQVGDKVLA 132
            GG+A K G  QVGD++L 
Sbjct: 63  DGGAAQKDGRLQVGDRLLM 81

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVG 127
           S  +          VEI        G+              ID I P    D++G    G
Sbjct: 5   SSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64

Query: 128 DKVLA 132
           D +L+
Sbjct: 65  DHILS 69

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 62  ASETEAQASPEAESGSEEQEEKYEEYEVEIE--QPYGLKFA--------KGRDGGTYIDA 111
           +S +              +  +    E+ +      GL  +         G D G +I +
Sbjct: 2   SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 112 IAPGGSADKTGMFQVGDKVLA 132
           I  GG+A K G  ++ D+++A
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIA 82

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 77  SEEQEEKYEEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           S      ++   V+++      F    G +      +  I  GG A  +   + GD+++ 
Sbjct: 3   SGSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVN 62

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 75  SGSEEQEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            G        +  +       GL+ A G D G ++  +     A K G+ + GD++L 
Sbjct: 21  QGHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEGDQILR 77

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 88  EVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            V+ +    +P G+           +  I  GG   + G   VGD++  
Sbjct: 4   LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIRE 52

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 63  SETEAQASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAP 114
                 +  +  + +   +   +   + +E  P GL F       +   D   Y+  +  
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFA 62

Query: 115 GGSADKTGMFQVGDKVLA 132
            G+A + G  + GD+++A
Sbjct: 63  KGAASEDGRLKRGDQIIA 80

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 11/73 (15%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--------AKGRDGGTYIDAIAPGGSAD 119
            S  +           E   VE+     GL F                 I ++   G A+
Sbjct: 1   GSSGSSGELALWSP--EVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAE 58

Query: 120 KTGMFQVGDKVLA 132
           ++G    GD++++
Sbjct: 59  RSGGLLPGDRLVS 71

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMF 124
           S    Q    E  EV +       +G++                I  I     A++ G+ 
Sbjct: 5   SSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 125 QVGDKVLA 132
           Q+GD+V+A
Sbjct: 65  QIGDRVMA 72

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 62  ASETEAQASPEAESGSEEQEEKY---EEYEVEIE-QPYGLKFA-KGRDGGTYIDAIAPGG 116
            S   + +  E E  S+ +       +  + ++     GL            I  +   G
Sbjct: 1   GSSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKG 60

Query: 117 SADKTGMFQVGDKVLA 132
           +A   G+ Q GD +++
Sbjct: 61  AAASDGILQPGDVLIS 76

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIEQP--YGLKF--AKGRDG-----GTYIDAIAPGGSAD 119
           A  E +   +   +       E+ +P   GL F     R       G ++  I  G  A 
Sbjct: 4   ACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAH 63

Query: 120 KTGMFQVGDKVLA 132
           + G  +  D++LA
Sbjct: 64  RDGRLKETDQILA 76

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 76  GSEEQEEKYEEYEVEIE---QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKV 130
           GS     +     +      +  G     G + G   Y+  + PG  A+K G+ +VGD++
Sbjct: 1   GSSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGL-RVGDQI 59

Query: 131 LA 132
           L 
Sbjct: 60  LR 61

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 85  EEYEVEI--EQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +   V +      GL  +    +       I  I  G +AD+T    VGD +L+
Sbjct: 4   QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILS 57

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVG 127
           GS          EV +E    +  G+   +   G       I  +  GG A+++G   +G
Sbjct: 1   GSSGSSGD-NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIG 59

Query: 128 DKVLA 132
           D++ A
Sbjct: 60  DRLTA 64

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 85  EEYEVEIE-----QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E ++V +      + +G   A G  + G Y+  I P G  D  G+ +  D++L 
Sbjct: 6   ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGL-KPYDRLLQ 58

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-QPYGLKF--AKGRD--GGTYIDAIAPGGSADKTGM 123
           +        +  + K       ++    G  F    G +      + ++ P G A + G 
Sbjct: 3   SGSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGK 62

Query: 124 FQVGDKVLA 132
            + GD ++ 
Sbjct: 63  METGDVIVY 71

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 15/66 (22%)

Query: 82  EKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAIAPGGSADKTGMFQV 126
           +  +   VE+  E    L      GR             G +I  +     A K G  + 
Sbjct: 1   QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60

Query: 127 GDKVLA 132
           GD+++ 
Sbjct: 61  GDRIVE 66

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIEQ-PYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             +   + +   GL F+          +  D G ++  IA GG+A + G  QVGD+VL+
Sbjct: 7   GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLS 65

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 13/61 (21%)

Query: 85  EEYEVEIE-QPYGLKF------------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           + +EVE+      L                 R GG Y+ A+ P G+A+  G    GD+VL
Sbjct: 9   DIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68

Query: 132 A 132
           A
Sbjct: 69  A 69

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 81  EEKYEEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                   VE+        GL  + G D  G   +  +  GG A ++    VGD + A
Sbjct: 3   GSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKA 60

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G    + +     I  + PGG AD+ G  + GD++L+
Sbjct: 126 GAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLS 162

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 88  EVEIE-QPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
             ++     G  F    G +      I ++   G A   G  + GD +++
Sbjct: 3   HTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 52

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE-QPYGLKF-------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + VE+E  P GL               G YI  + PG  A   G   +GD++L 
Sbjct: 8   YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIEQ-PYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              EV + + P GL F             D   YI  I  GG+A K G  Q+GD++LA
Sbjct: 3   TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 73  AESGSEEQEEK-YEEYEVEIE--QPYGLKFA----------KGRDGGTYIDAIAPGGSAD 119
             SGS   EE  +E+Y V ++     G   A          +  +    I  + PGG AD
Sbjct: 1   GSSGSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD 60

Query: 120 KTGMFQVGDKVLA 132
             G+ Q  D+V+ 
Sbjct: 61  --GLLQENDRVVM 71

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 13/61 (21%)

Query: 85  EEYEVEIE-QPYGLKF------------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           +   + +      L F                  G ++  I   G A K G  Q+ D+++
Sbjct: 8   KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 132 A 132
            
Sbjct: 68  E 68

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 85  EEYEVEIE-QPYGLKF---------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +  E+++   P GL F             D   Y+  I  GG+A K G  Q+GDK+LA
Sbjct: 3   KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 12/60 (20%)

Query: 85  EEYEVEIE--QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V ++                      +  G +I  I P   A   G  +VGD++L+
Sbjct: 5   LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)

Query: 96  GLKFAKGRDG-------GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G++   G++        G YI  I PGGSA++TG    G +VL 
Sbjct: 33  GIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLE 76

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKT 121
             S      +    +  +E +V +     +  GL    G + G   YI  + PG  A+ +
Sbjct: 3   SGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS 62

Query: 122 GMFQVGDKVLA 132
           G+ +VGD++L 
Sbjct: 63  GL-KVGDQILE 72

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE-QPYGLKFA------KGRDGGTYIDAIAPGGSADKTGMFQVG 127
             S    ++   + V    +  GL         +      YI  + PGG   K G  + G
Sbjct: 4   GSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPG 63

Query: 128 DKVLA 132
           D++++
Sbjct: 64  DQLVS 68

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDK 129
           GS         + V +E       G     G + G   ++  +  G SA++ G+  VGDK
Sbjct: 1   GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGL-CVGDK 59

Query: 130 VLA 132
           +  
Sbjct: 60  ITE 62

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 87  YEVEI--EQPYGLKFA-KGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             V +   +  GL F  K R       I  +  GG+A+++G+ Q GD +LA
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILA 53

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 75  SGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGD 128
           S    +  ++    V ++       G     G+      +I  + P   A + G+ Q GD
Sbjct: 5   SSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGL-QEGD 63

Query: 129 KVLA 132
           +VLA
Sbjct: 64  QVLA 67

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 84  YEEYEVEIE-QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E + VE+E    GL            A     G ++  +  GG+A + G  QV D+++ 
Sbjct: 8   LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 85  EEYEVEIEQP---YGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               V +++     G+    G +       I  I  GGSA   G  +VG  +L 
Sbjct: 6   SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 91  IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                G       D G +I  ++P G+A + G  +VG ++L 
Sbjct: 31  ARGHAGNPRDPT-DEGIFISKVSPTGAAGRDGRLRVGLRLLE 71

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 84  YEEYEVEIEQ------PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVF 137
           + +  + I Q       +G        G  ++ ++  G  A+ + + QV D+++   A+ 
Sbjct: 2   FSDMRISINQTPGKSLDFGFTIKWDIPG-IFVASVEAGSPAEFSQL-QVDDEII---AIN 56

Query: 138 GTEIWPAAEYGRTMYTIRQRVGPLLMKMQ-KRYGK 171
            T+     +       + +      + M  +RYGK
Sbjct: 57  NTKF-SYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 70  SPEAESGSEEQEEKYEEYEVEIEQPYGLKFA----KGRDGGTYIDAIAPGGSADKTGMFQ 125
           S  +      +E K ++  + +    GL  +      +  G +I  + PG  + + G+ +
Sbjct: 2   SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGL-E 60

Query: 126 VGDKVLA 132
           +GD+++ 
Sbjct: 61  IGDQIVE 67

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 84  YEEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            E  E+ +E      G   A G D          +I  I PGG+A + G  +V D +L 
Sbjct: 4   MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           D   Y+  I  GG+A K G  Q+GDK+LA
Sbjct: 129 DNSIYVTKIIEGGAAHKDGRLQIGDKILA 157

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 73  AESGS--EEQEEKYEEYEVEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDK 129
             SGS  E   E  E+ ++ I     G  F    D    + A+  GG A++ G+ Q  D 
Sbjct: 1   GSSGSSGEGDPENGEKLQITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGL-QQLDT 59

Query: 130 VLA 132
           VL 
Sbjct: 60  VLQ 62

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 15/73 (20%)

Query: 75  SGSEEQEEKYEEYEVEI--EQPYGLKF--AKGRDG-----------GTYIDAIAPGGSAD 119
           S             VEI  E    L      G+             G +I  +     A 
Sbjct: 5   SSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAG 64

Query: 120 KTGMFQVGDKVLA 132
           KT   + GDK+L 
Sbjct: 65  KTNALKTGDKILE 77

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 76  GSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
           GS     +     V I     +  G+ F +   G   I  I  GG   + G+  VGD + 
Sbjct: 1   GSSGSSGR----MVGIRKTAGEHLGVTF-RVEGGELVIARILHGGMVAQQGLLHVGDIIK 55

Query: 132 A 132
            
Sbjct: 56  E 56

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 81  EEKYEEYEVEIE--QPYGLKFA----------KGRDGGTYIDAIAPGGSADKTGMFQVGD 128
              +E++ V +     +G   A          +  +    I  +  GG A+  G  Q  D
Sbjct: 3   HMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQEND 60

Query: 129 KVLA 132
           +V  
Sbjct: 61  RVAM 64

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           G K  +      +I  +  G  AD  G  + GD+VL 
Sbjct: 56  GGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           DGG YI +I  GG+    G  + GD +L 
Sbjct: 32  DGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE-----QPYGLKFAKGRDG----GTYIDAIAPGGSAD 119
           +    +   E   E+ E  EV++         GL      D     G YI  I P   A 
Sbjct: 3   SGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAA 62

Query: 120 KTGMFQVGDKVLA 132
           K G  + GD+++ 
Sbjct: 63  KDGRIREGDRIIQ 75

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V+I+         F         + A+  GGSA   G    GD++L 
Sbjct: 8   VRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH--GKLFPGDQILQ 56

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIE-QPYGLKF----------AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E + VE+E    GL                  G ++  +  GG+A + G  QV D ++ 
Sbjct: 4   ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 93  QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           + YGL+ A       ++  I+    A + G  Q GD VL 
Sbjct: 13  EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLK 48

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIE--QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
             Y V +    P+G +   G+D      I ++  GG A +  + ++GD VL+
Sbjct: 3   SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANV-RIGDVVLS 53

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 85  EEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
           + ++V +E P    F    G+D      I  + PGG A + G+  VGD VL+
Sbjct: 3   DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGV-AVGDWVLS 53

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 96  GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
             ++        ++  +   G A K G    GD +L 
Sbjct: 12  NEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILK 48

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 76  GSEEQEE-KYEEYEVEIEQPYGLKF------------AKGRDGGTYIDAIAPGGSADKTG 122
           GS    E   +E  V +E+   L F             +  D G ++  + P G A    
Sbjct: 1   GSHMGHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--K 58

Query: 123 MFQVGDKVLA 132
           + Q GDK++ 
Sbjct: 59  LLQPGDKIIQ 68

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 68  QASPEAESGSEEQEEKYEEYEVEIEQPYGLKF--AKGRDGGT--YIDAIAPGGSADKTGM 123
           +   E +  +  +  K +E  ++   P GL      G + G   +I  +  GG AD  G+
Sbjct: 69  KHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGL 128

Query: 124 FQVGDKVLA 132
            QVGD+++ 
Sbjct: 129 -QVGDEIVR 136

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 89  VEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           VE+     G  F         +  +  G  AD  G+ + GD++LA
Sbjct: 6   VEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGL-RAGDQILA 49

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 105 GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              ++  I+    A + G  Q GD VL 
Sbjct: 23  SHIFVKEISQDSLAARDGNIQEGDVVLK 50

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 101 KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
                  YI  +     A   G    GD++  
Sbjct: 46  AQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 77

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 73  AESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVG 127
             SGS      +   E ++     Q YG      +D  G  I  I  G  A+K G+   G
Sbjct: 1   GSSGSSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGL-LDG 59

Query: 128 DKVLA 132
           D+VL 
Sbjct: 60  DRVLR 64

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +  EV +        GL+     D G ++  +     A   G+ + GD+VL 
Sbjct: 4   DPREVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVGL-RFGDQVLQ 53

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 85  EEYEVEIE-QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
              ++ I     G  F    D    + A+  GG A++ G+ Q  D VL 
Sbjct: 3   RYRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGL-QQLDTVLQ 50

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 82  EKYEEYEVEIE--QPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLA 132
                + V +    P+G +   GRD      I  +  G  A    +   GD + A
Sbjct: 5   SSGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAAL-CPGDLIQA 58

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEIE----QPYGLKFAKGRDGGT--YIDAIAPGGSADK-T 121
            S   +              + ++      +G     G D      +  +APG  AD   
Sbjct: 1   GSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCV 60

Query: 122 GMFQVGDKVLA 132
                GD+V+ 
Sbjct: 61  PRLNEGDQVVL 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.47
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.42
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.4
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.38
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.37
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.36
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.35
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.34
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.34
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.34
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.33
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.31
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.3
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.3
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.29
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.27
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.27
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.25
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.23
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.21
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.19
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.14
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.1
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.1
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.1
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.05
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.03
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.03
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.02
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.01
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.01
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.01
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.99
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.99
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.99
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.99
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.99
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.99
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.99
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.98
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.98
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.97
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.96
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.96
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.96
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.95
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.95
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.95
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.94
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.93
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.92
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.89
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.89
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.88
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.88
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.87
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.87
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.86
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.76
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.71
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.7
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.68
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.68
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.67
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.67
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.67
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.63
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.62
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.61
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.59
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.56
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.55
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.53
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.52
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.51
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.46
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.45
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.43
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.42
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.41
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.4
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.38
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.38
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.37
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.35
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.34
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.34
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.33
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.32
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.27
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.23
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.2
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.2
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.17
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.15
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.13
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.02
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.01
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.98
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.87
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	97.87
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.81
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.76
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	97.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.67
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	97.66
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.65
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.65
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	97.59
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	97.56
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	97.55
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.55
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	97.5
2opg_A	98	Multiple PDZ domain protein; structural protein, s	97.44
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	97.44
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	97.44
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	97.43
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	97.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.42
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	97.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.4
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	97.4
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	97.39
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.39
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	97.38
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	97.36
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	97.35
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	97.34
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.31
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	97.29
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	97.28
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	97.26
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	97.24
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	97.22
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	97.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.2
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	97.2
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.2
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	97.19
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.19
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	97.18
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	97.18
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	97.18
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.17
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	97.17
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	97.17
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.16
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	97.14
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	97.14
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	97.14
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	97.13
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	97.13
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	97.12
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	97.11
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	97.11
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	97.11
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	97.11
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	97.1
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	97.09
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	97.08
2awx_A	105	Synapse associated protein 97; membrane protein, s	97.08
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	97.07
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	97.07
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	97.07
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	97.07
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	97.07
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	97.05
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	97.05
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	97.05
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	97.04
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	97.04
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	97.03
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	97.03
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	97.03
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	97.03
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.02
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	97.02
2fne_A	117	Multiple PDZ domain protein; structural protein, s	97.02
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	97.01
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	96.98
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	96.97
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	96.97
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	96.95
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	96.95
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	96.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.92
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	96.92
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	96.92
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.92
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.91
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	96.91
2d90_A	102	PDZ domain containing protein 1; structural genomi	96.91
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	96.91
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	96.89
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	96.87
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	96.86
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	96.86
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	96.86
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	96.85
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.84
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	96.83
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	96.82
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	96.81
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	96.81
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	96.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.79
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	96.78
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	96.77
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	96.77
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	96.76
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	96.75
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.75
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	96.73
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	96.72
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	96.72
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	96.71
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	96.71
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	96.69
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	96.66
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	96.65
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	96.64
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	96.64
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	96.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.63
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	96.59
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	96.59
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	96.59
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	96.56
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	96.55
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	96.55
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.54
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	96.51
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	96.5
2ego_A	96	General receptor for phosphoinositides 1- associat	96.49
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	96.47
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	96.46
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	96.46
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	96.45
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	96.45
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	96.39
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	96.38
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	96.35
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	96.34
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	96.33
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	96.31
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	96.29
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	96.28
4amh_A	106	Disks large homolog 1; permutation, protein foldin	96.22
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	96.21
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	96.19
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	96.18
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	96.17
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	96.17
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	96.16
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.15
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	96.1
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	96.05
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	96.04
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	96.03
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	96.03
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.0
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.98
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	95.96
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	95.95
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	95.89
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	95.85
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	95.8
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	95.79
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	95.77
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	95.76
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	95.75
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	95.73
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	95.72
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	95.7
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	95.67
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	95.35
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	95.32
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	95.3
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	95.26
3khf_A	99	Microtubule-associated serine/threonine-protein ki	95.21
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	94.13
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	94.89
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	94.77
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	94.75
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	94.66
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	94.63
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	94.62
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	94.58
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	94.47
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	94.37
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	94.35
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	94.2
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	94.02
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.87
2kl1_A	94	YLBL protein; structure genomics, structural genom	93.07
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	92.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.93
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	92.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	92.35
4fgm_A	597	Aminopeptidase N family protein; structural genomi	92.26
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	92.21
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	92.07
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	92.05
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	91.92
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.74
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	91.63
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	91.44
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	91.43
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.16
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.04
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	90.99
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	90.4
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	90.33
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	90.21
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	89.73
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	89.52
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.29
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	88.62
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.6
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	88.43
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.42
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	87.6
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	87.46
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	87.14
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	86.35
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	86.34
3k50_A	403	Putative S41 protease; structural genomics, joint	86.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.16
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	86.06
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	85.38
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.98
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.7
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	82.4
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	82.4
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	82.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	82.08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.64
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	80.54

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.55  E-value=4.5e-14  Score=115.60  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             HHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871          185 RAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (334)
Q Consensus       185 ~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a  261 (334)
                      .++++.|+...  +..+.++..|.++++++|.....+ ++|.+++++|+|++|+..|+++|+++|++   ..+|+++|.|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---IKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---hHHHHHHHHH
Confidence            34555555443  334666777888888888766654 78888888888888888888888888887   5678888888


Q ss_pred             HHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          262 YSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       262 y~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |..+|++++|+.+|++||+++|++..
T Consensus        91 ~~~~~~~~~A~~~~~~al~l~P~~~~  116 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQVDPSNEE  116 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence            88888888888888888888887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=8.2e-14  Score=114.05  Aligned_cols=115  Identities=17%  Similarity=0.277  Sum_probs=94.0

Q ss_pred             HHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          208 KKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       208 ~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .+.++|+.++.+ ++|..+++.|+|++|+.+|+++|+++|++   +.+|+++|.||..+|++++|+.+|++||+++|.+.
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence            345677766655 99999999999999999999999999998   68999999999999999999999999999999988


Q ss_pred             HHHhcChhhHHHhcChHHHHHHHHHHHhhh----chhHHHHHHHh
Q 019871          287 KRVRTDPDLENLRASEEFDVLLKRFDESFI----NENAINAIKSL  327 (334)
Q Consensus       287 ~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~----~~~ai~~~k~~  327 (334)
                      ..... -+. .+....+|.++++.|++.+.    +..|.+.+..+
T Consensus        82 ~a~~~-lg~-~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           82 KGYIR-KAA-CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHH-HHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHH-HHH-HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            73322 222 34556789999999999983    45566665554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.47  E-value=6.5e-13  Score=139.91  Aligned_cols=157  Identities=10%  Similarity=0.013  Sum_probs=120.6

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRT  228 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~  228 (334)
                      +...+|.++.+++++.++++... .+..+. ...++.+.|.++..+  .+.++..|.++++++|+..+++ ++|.++.++
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~   90 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM   90 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45678999999999999998533 222111 135667777776555  4777899999999999987765 999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL  308 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL  308 (334)
                      |++++|+++|++|++++|++   +.+|+|+|.+|..+|++++|+++|++||+++|++......- . ..+....+|.+++
T Consensus        91 g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L-~-~~l~~~g~~~~A~  165 (723)
T 4gyw_A           91 QDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL-A-HCLQIVCDWTDYD  165 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-H-HHHHHTTCCTTHH
T ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh-h-hHHHhcccHHHHH
Confidence            99999999999999999998   68999999999999999999999999999999987633221 1 1223334455555


Q ss_pred             HHHHHhh
Q 019871          309 KRFDESF  315 (334)
Q Consensus       309 ~~~~e~~  315 (334)
                      +.|++.+
T Consensus       166 ~~~~kal  172 (723)
T 4gyw_A          166 ERMKKLV  172 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.46  E-value=6.9e-13  Score=113.19  Aligned_cols=108  Identities=5%  Similarity=-0.047  Sum_probs=89.6

Q ss_pred             hhhchhcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871          173 EQTGELSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE  249 (334)
Q Consensus       173 e~~~~l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~  249 (334)
                      ....++.... ..++.+.|....  +..+.++..|.+.++++|.+...+ ++|.+++++|+|++|+.+|+++++++|++ 
T Consensus        26 ~~al~l~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-  103 (151)
T 3gyz_A           26 KDINAIPDDM-MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-  103 (151)
T ss_dssp             GGGCCSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-
T ss_pred             HHHhCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-
Confidence            3334445543 344555665553  345777899999999999987765 99999999999999999999999999998 


Q ss_pred             cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          250 ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       250 e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                        +.+|+++|.||..+|++++|+.+|++|+++.|+
T Consensus       104 --~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          104 --YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             --cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence              579999999999999999999999999999987

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.42  E-value=1e-12  Score=110.81  Aligned_cols=159  Identities=10%  Similarity=0.088  Sum_probs=107.8

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRT  228 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~  228 (334)
                      +...+|.++...+++.++++......+.+  ...++.+.|.+...+  .+.++..+.+.+...|.....+ .+|..+...
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI   86 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence            56678888888888888887433221111  134455555554333  3455666777777777765554 778888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL  308 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL  308 (334)
                      ++++.|+..++++++++|++   ..+++++|.+|..+|++++|++.|+++++++|.+...... -+. .+....+|++++
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-lg~-~~~~~g~~~~A~  161 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS-IGL-AYEGKGLRDEAV  161 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH-HHH-HHHHCCCHHHHH
Confidence            88888888888888888887   5678888888888888888888888888888877662221 121 234456788888


Q ss_pred             HHHHHhhhc
Q 019871          309 KRFDESFIN  317 (334)
Q Consensus       309 ~~~~e~~~~  317 (334)
                      +.|++.+..
T Consensus       162 ~~~~~al~~  170 (184)
T 3vtx_A          162 KYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            888877743

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.42  E-value=6.9e-13  Score=115.78  Aligned_cols=86  Identities=10%  Similarity=0.008  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhhccC-------HH------HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCcchHHH--
Q 019871          198 REIQMQNYMKKKEQKER-------RE------QDLREGLQLYRTGKYEVAREKFESVLGS-------KPTPEESSVAS--  255 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~-------~~------~~~nlG~al~~~g~yeeAl~~fekALel-------dP~~~e~~~a~--  255 (334)
                      .+.++..|.++++++|+       +.      .+.|+|.++.++|+|++|+.+|++||++       +|++   +.+|  
T Consensus        27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~---~~A~~~  103 (159)
T 2hr2_A           27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE---GKLWIS  103 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH---HHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch---HHHHHH
Confidence            45677788888888887       32      3349999999999999999999999999       9998   6899  


Q ss_pred             --HHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          256 --YNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       256 --yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                        ||+|.+|..+|++++|+.+|++||+++|++.
T Consensus       104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A          104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence              9999999999999999999999999998854

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.41  E-value=4.5e-12  Score=106.87  Aligned_cols=129  Identities=13%  Similarity=0.114  Sum_probs=99.5

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTG  229 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g  229 (334)
                      ...+|.++..+++...+++.........  ....+...|.+....  .+.+...+.+++++.|.....+ .+|.+++++|
T Consensus        42 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g  121 (184)
T 3vtx_A           42 LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMG  121 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC
Confidence            3457888888888888776432221111  012233344333322  3556778888899999877665 9999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      +|++|++.|+++++++|++   +.+|+++|.+|..+|++++|+.+|++||+++|++.
T Consensus       122 ~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          122 EHDKAIEAYEKTISIKPGF---IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             CchhHHHHHHHHHHhcchh---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            9999999999999999998   68999999999999999999999999999998754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.40  E-value=5.5e-13  Score=113.79  Aligned_cols=108  Identities=13%  Similarity=0.031  Sum_probs=90.2

Q ss_pred             HHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       204 ~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .+.+.++++|++.+. +++|.++++.|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++|++++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            345566777877665 599999999999999999999999999998   6899999999999999999999999999999


Q ss_pred             CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |++..... .-.. .+....++.+++..|++.+.
T Consensus       101 P~~~~~~~-~lg~-~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          101 KNDYTPVF-HTGQ-CQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             SSCCHHHH-HHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHH-HHHH-HHHHcCCHHHHHHHHHHHHH
Confidence            99877332 2222 34556788888888888773

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.39  E-value=8.1e-13  Score=110.69  Aligned_cols=87  Identities=14%  Similarity=0.007  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH-H
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA-L  275 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~-l  275 (334)
                      .+.++..|.++++++|++...+ ++|.++.+.|++++|+.+|+++++++|++   +.+|+++|.+|..+|++++|++. +
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~aa~~~~  123 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ---KDLVLKIAELLCKNDVTDGRAKYWV  123 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3556677777777777766654 77777777888888888888888777777   56777788777777777766654 5


Q ss_pred             HHHHHcCCCCHH
Q 019871          276 EDALLAGYEDFK  287 (334)
Q Consensus       276 ekAIelgp~~~~  287 (334)
                      ++|++++|++..
T Consensus       124 ~~al~l~P~~~~  135 (150)
T 4ga2_A          124 ERAAKLFPGSPA  135 (150)
T ss_dssp             HHHHHHSTTCHH
T ss_pred             HHHHHhCcCCHH
Confidence            777777777654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.38  E-value=1.9e-12  Score=105.67  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ++|.++++.|+|++|+.+|++||+++|++   +.+|+|+|.||..+|++++|+.+|++||+++|++
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            67777777777777777777777777776   5677777777777777777777777777776653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.37  E-value=1.1e-12  Score=114.62  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------chHHHHHHHHHHHHCCChHHHHHHHHHHHHc----
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVKAGLSALEDALLA----  281 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---------~~~a~yNlA~ay~~lG~~eeAl~~lekAIel----  281 (334)
                      ...++++|+.+++.|+|++|+.+|++||+++|++++         .+.+|+|+|.|+.++|++++|+.+|++||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            455679999999999999999999999999999421         1239999999999999999999999999999    


Q ss_pred             ---CCCCHH-H----HhcChhhHHHhcChHHHHHHHHHHHhhhc
Q 019871          282 ---GYEDFK-R----VRTDPDLENLRASEEFDVLLKRFDESFIN  317 (334)
Q Consensus       282 ---gp~~~~-~----i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~  317 (334)
                         +|++.. |    ....-   .+....+|++++..|++.+..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~---aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRAL---ALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHH---HHHHCCCHHHHHHHHHHHHhc
Confidence               999776 4    33332   356667899999999998844

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.36  E-value=7.7e-12  Score=110.35  Aligned_cols=128  Identities=13%  Similarity=0.093  Sum_probs=82.3

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH-------------HHHHHHHHHHHHhhccCHHHHH-
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV-------------REIQMQNYMKKKEQKERREQDL-  219 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l-------------~e~q~~~y~~~iel~~~~~~~~-  219 (334)
                      ...|.++..+++..++++......+..  ...++.+.|.+....             .+.++..|.++++++|+....+ 
T Consensus        43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~  122 (217)
T 2pl2_A           43 YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL  122 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH
Confidence            345666666666666665322111110  122344455444333             3445667777777777765554 


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++|.++..+|++++|+..|+++++++ ++   +.+|+++|.+|..+|++++|+.+|+++++++|++..
T Consensus       123 ~lg~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          123 QRGLVYALLGERDKAEASLKQALALE-DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcc-cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            77777777777777777777777777 55   567777777777777777777777777777777654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.35  E-value=1e-11  Score=108.92  Aligned_cols=64  Identities=17%  Similarity=0.116  Sum_probs=54.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       221 lG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      +|.++.++|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+++|+++|++..
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            8888888888888888888888888887   578888888888888888888888888888888765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.34  E-value=5e-12  Score=133.17  Aligned_cols=127  Identities=14%  Similarity=0.075  Sum_probs=105.6

Q ss_pred             HHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871          185 RAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (334)
Q Consensus       185 ~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a  261 (334)
                      .++.|.|.++...  .+.++..|.++++++|+...++ ++|.++.++|+|++|+.+|++||+++|++   +.+|+|+|.+
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~nLg~~   86 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence            4456667666544  4778899999999999987765 99999999999999999999999999998   6899999999


Q ss_pred             HHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          262 YSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       262 y~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |..+|++++|+++|++||+++|++...... -.. .+....+|+++++.|++.+.
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~-Lg~-~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSN-LAS-IHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-HHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999998763322 121 24456678888888887763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.34  E-value=9.4e-12  Score=121.32  Aligned_cols=131  Identities=9%  Similarity=0.004  Sum_probs=105.5

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH---HHHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV---REIQMQNYMKKKEQKERREQDL-REGLQLYR  227 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l---~e~q~~~y~~~iel~~~~~~~~-nlG~al~~  227 (334)
                      +....|.++...++..++++.........  ...+|.+.|.+...+   .+.++..|.++++++|+....+ ++|.++..
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            45567888888888888887432111111  134566777666443   4567889999999999887765 99999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      +|+|++|+.+|+++|+++|++   ..+|+++|.+|..+|++++|+.+|++||+++|.+..
T Consensus       179 ~g~~~eAl~~~~kal~ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~  235 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS  235 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             ccCHHHHHHHHHHHHHhCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999998   689999999999999999999999999999998776

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.34  E-value=2.1e-11  Score=102.19  Aligned_cols=87  Identities=11%  Similarity=-0.020  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      +..+.++..|.+.++++|.+...+ ++|.++++.|+|++|+.+|+++++++|++   +.+|+++|.||..+|++++|+.+
T Consensus        35 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~  111 (148)
T 2vgx_A           35 GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAECLLQXGELAEAESG  111 (148)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHH
Confidence            334667788899999999877665 99999999999999999999999999998   57999999999999999999999


Q ss_pred             HHHHHHcCCCC
Q 019871          275 LEDALLAGYED  285 (334)
Q Consensus       275 lekAIelgp~~  285 (334)
                      |++|++++|++
T Consensus       112 ~~~al~~~p~~  122 (148)
T 2vgx_A          112 LFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHCcCC
Confidence            99999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.33  E-value=3.6e-12  Score=111.12  Aligned_cols=87  Identities=17%  Similarity=0.190  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871          196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY----------EVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y----------eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~  264 (334)
                      ...+.++..|.++++++|++.+.+ ++|.++.+.+++          ++|+.+|++||+++|++   ..+|||+|.+|..
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---~~A~~~LG~ay~~   92 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---DEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHH
Confidence            345667889999999999998876 799999999876          59999999999999998   6899999999998


Q ss_pred             CC-----------ChHHHHHHHHHHHHcCCCC
Q 019871          265 LN-----------QVKAGLSALEDALLAGYED  285 (334)
Q Consensus       265 lG-----------~~eeAl~~lekAIelgp~~  285 (334)
                      +|           ++++|+++|++||+++|++
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            85           8999999999999999985

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.32  E-value=1.1e-11  Score=109.31  Aligned_cols=155  Identities=12%  Similarity=0.037  Sum_probs=116.3

Q ss_pred             HHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc-
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRT-  228 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~-  228 (334)
                      ....|.++...+++.+++.... .+.... ...++.+.|.+....  .+.++..|.++++++|+....+ ++|.++.++ 
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~   87 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY   87 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence            3467888888888888877422 111111 123455556555433  4667889999999999987665 999999999 


Q ss_pred             ----------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHH
Q 019871          229 ----------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENL  298 (334)
Q Consensus       229 ----------g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~L  298 (334)
                                |++++|+..|+++++++|++   +.+|+++|.+|..+|++++|+.+|++|++++ ++.... ..-.. .+
T Consensus        88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~-~~la~-~~  161 (217)
T 2pl2_A           88 RQAEDRERGKGYLEQALSVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR-SALAE-LY  161 (217)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH-HHHHH-HH
T ss_pred             hhhhhhcccccCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH-HHHHH-HH
Confidence                      99999999999999999998   6899999999999999999999999999999 655522 22221 13


Q ss_pred             hcChHHHHHHHHHHHhh
Q 019871          299 RASEEFDVLLKRFDESF  315 (334)
Q Consensus       299 r~dp~F~~lL~~~~e~~  315 (334)
                      ....+|.+++..|++.+
T Consensus       162 ~~~g~~~~A~~~~~~al  178 (217)
T 2pl2_A          162 LSMGRLDEALAQYAKAL  178 (217)
T ss_dssp             HHHTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            33457777777777766

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.31  E-value=7.4e-12  Score=102.10  Aligned_cols=98  Identities=12%  Similarity=0.080  Sum_probs=82.9

Q ss_pred             hhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHH
Q 019871          187 ERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVA  259 (334)
Q Consensus       187 ~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA  259 (334)
                      +++.|+...  +-.+.++..|.++++++|+....+ ++|.+++++|+|++|+..|+++|+++|++..    .+.+|+++|
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            444554443  334667889999999999987776 9999999999999999999999999998742    135899999


Q ss_pred             HHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          260 CCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       260 ~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+|..+|++++|+++|++||+..|+
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            9999999999999999999998775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.31  E-value=1.2e-11  Score=103.48  Aligned_cols=87  Identities=7%  Similarity=0.064  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..+.+++...|.... .+++|.+++++|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++
T Consensus        14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            3455677777766666544 3699999999999999999999999999998   68999999999999999999999999


Q ss_pred             HHHcCCCCHHH
Q 019871          278 ALLAGYEDFKR  288 (334)
Q Consensus       278 AIelgp~~~~~  288 (334)
                      ||+++|++...
T Consensus        91 al~~~p~~~~~  101 (150)
T 4ga2_A           91 SVELNPTQKDL  101 (150)
T ss_dssp             HHHHCTTCHHH
T ss_pred             HHHhCCCCHHH
Confidence            99999998773

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.5e-11  Score=98.06  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+++++.|+....+ ++|.+++++|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~   96 (126)
T 3upv_A           20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLD   96 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4556778888888888876655 99999999999999999999999999998   6799999999999999999999999


Q ss_pred             HHHHcCC
Q 019871          277 DALLAGY  283 (334)
Q Consensus       277 kAIelgp  283 (334)
                      ++++++|
T Consensus        97 ~al~~~p  103 (126)
T 3upv_A           97 AARTKDA  103 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhCc
Confidence            9999983

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.30  E-value=1.4e-11  Score=102.81  Aligned_cols=73  Identities=14%  Similarity=-0.008  Sum_probs=66.4

Q ss_pred             ccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          212 KERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       212 ~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .|..... +++|.+++++|+|++|+..|+++|+++|++   +.+|+++|.||..+|++++|+.+|++|++++|++..
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  132 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS  132 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence            4454444 499999999999999999999999999998   689999999999999999999999999999999763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.30  E-value=2.9e-11  Score=99.35  Aligned_cols=86  Identities=12%  Similarity=0.015  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+.++++|.+...+ ++|.++++.|+|++|+.+|+++++++|++   +.+|+++|.||..+|++++|+.+|+
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~  110 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPFHAAECHLQLGDLDGAESGFY  110 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4566778888899999876654 99999999999999999999999999998   5799999999999999999999999


Q ss_pred             HHHHcCCCCH
Q 019871          277 DALLAGYEDF  286 (334)
Q Consensus       277 kAIelgp~~~  286 (334)
                      ++++++|++.
T Consensus       111 ~al~~~p~~~  120 (142)
T 2xcb_A          111 SARALAAAQP  120 (142)
T ss_dssp             HHHHHHHTCG
T ss_pred             HHHHhCCCCc
Confidence            9999988743

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.29  E-value=1.5e-11  Score=102.97  Aligned_cols=108  Identities=12%  Similarity=0.076  Sum_probs=89.6

Q ss_pred             HHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       204 ~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .|.+++++.|++... +++|..+++.|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++|++++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            456677777876555 599999999999999999999999999998   6899999999999999999999999999999


Q ss_pred             CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |++...... -. ..+....++.++++.|++.+.
T Consensus        86 p~~~~~~~~-lg-~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           86 IXEPRFPFH-AA-ECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             TTCTHHHHH-HH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHH-HH-HHHHHcCCHHHHHHHHHHHHH
Confidence            998763322 11 124455778888888887764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=6.1e-11  Score=94.42  Aligned_cols=98  Identities=14%  Similarity=0.186  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL  295 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl  295 (334)
                      ...+++|..+++.|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++|++++|.+......- ..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-g~   80 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK-AT   80 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-HH
Confidence            345699999999999999999999999999998   68999999999999999999999999999999987632221 11


Q ss_pred             HHHhcChHHHHHHHHHHHhhhch
Q 019871          296 ENLRASEEFDVLLKRFDESFINE  318 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~~~~  318 (334)
                       .+....+|.++++.|++.+..+
T Consensus        81 -~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           81 -AQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             -HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHhCHHHHHHHHHHHHHhC
Confidence             2344567888888888877544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.27  E-value=1.5e-11  Score=99.69  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.++++++|+....+ .+|.++.++|++++|+.+|+++++++|++   ..+|+++|.+|..+|++++|+.+|+
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~la~~~~~~g~~~~A~~~~~  109 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456677777888888765554 88888888888888888888888888887   5688888888888888888888888


Q ss_pred             HHHHcCCCC
Q 019871          277 DALLAGYED  285 (334)
Q Consensus       277 kAIelgp~~  285 (334)
                      ++++++|.+
T Consensus       110 ~al~~~P~~  118 (121)
T 1hxi_A          110 AWLLSQPQY  118 (121)
T ss_dssp             HHHC-----
T ss_pred             HHHHhCcCC
Confidence            888888764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.27  E-value=6.8e-11  Score=103.15  Aligned_cols=130  Identities=6%  Similarity=0.023  Sum_probs=101.5

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcH-HHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSE-KEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLY  226 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~e-k~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~  226 (334)
                      .....|.++...+++.++++...   ++.. .+ ...+.+.|.+..  +..+.++..|.++++++|+....+ ++|.+++
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            34567889999999988887432   2221 11 122333444443  334667889999999999987765 9999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          227 RTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       227 ~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+|+|++|+..|+++++++|+++.    ...+|+++|.++..+|++++|+.+|++|++++|+
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999831    0156999999999999999999999999999998

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.26  E-value=3.3e-11  Score=100.71  Aligned_cols=87  Identities=16%  Similarity=0.041  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.++++++|.....+ ++|.+++++|+|++|+.+|+++++++|++   ..+|+++|.+|..+|++++|+.+|+
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~  103 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYE  103 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4567788889999999876665 99999999999999999999999999998   6899999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      ++++++|++..
T Consensus       104 ~al~~~p~~~~  114 (164)
T 3sz7_A          104 KGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHSSSCC
T ss_pred             HHHHhCCCchH
Confidence            99999998654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.25  E-value=1.9e-11  Score=100.45  Aligned_cols=108  Identities=13%  Similarity=0.120  Sum_probs=86.2

Q ss_pred             HHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       204 ~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .|.+.+++.|++... +.+|..+++.|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++|++++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            455566667766554 599999999999999999999999999998   6899999999999999999999999999999


Q ss_pred             CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |++...... -. ..+....+|.++++.|++.+.
T Consensus        83 p~~~~~~~~-lg-~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           83 INEPRFPFH-AA-ECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             TTCTHHHHH-HH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHH-HH-HHHHHcCCHHHHHHHHHHHHH
Confidence            998763322 11 124445678888888877663

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.24  E-value=2.5e-11  Score=118.36  Aligned_cols=129  Identities=9%  Similarity=-0.002  Sum_probs=105.8

Q ss_pred             HHhhhhHHHHhhc-ccchhhhhc---hhcHHHHHHHhhchhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871          155 RQRVGPLLMKMQK-RYGKMEQTG---ELSEKEIIRAERNSGVISNRVR--EIQMQNYMKKKEQKERREQDL-REGLQLYR  227 (334)
Q Consensus       155 ~~R~G~V~lkLek-~~~aie~~~---~l~ek~~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG~al~~  227 (334)
                      ....|.++..+++ +.++++...   ++..+. ..+|.+.|.+...+.  +.++..|.++++++|++..++ ++|.++.+
T Consensus       134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            3457888889887 888887433   222221 356777887776664  557889999999999987765 99999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-CCChHHH-----HHHHHHHHHcCCCCHH
Q 019871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK-LNQVKAG-----LSALEDALLAGYEDFK  287 (334)
Q Consensus       228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~-lG~~eeA-----l~~lekAIelgp~~~~  287 (334)
                      +|+|++|+.+|+++|+++|++   ..+|+++|.+|.. .|..++|     +.+|++||+++|++..
T Consensus       213 ~g~~~eAl~~~~~al~l~P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          213 FKLWDNELQYVDQLLKEDVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             cCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999998   6899999999999 5555888     5999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=1.8e-10  Score=109.02  Aligned_cols=100  Identities=10%  Similarity=0.038  Sum_probs=85.6

Q ss_pred             HHhhchhhhhhhH--HHHHHHHHHHHHhhccCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 019871          185 RAERNSGVISNRV--REIQMQNYMKKKEQKERR----------------EQDLREGLQLYRTGKYEVAREKFESVLGSKP  246 (334)
Q Consensus       185 ~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~----------------~~~~nlG~al~~~g~yeeAl~~fekALeldP  246 (334)
                      ..+.+.|......  .+.++..|.+++++.|..                ...+++|.+++++|+|++|+.+|+++++++|
T Consensus       148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  227 (336)
T 1p5q_A          148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS  227 (336)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3455556555433  466778888888888876                3445999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          247 TPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       247 ~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++   ..+|+++|.+|..+|++++|+.+|++|++++|++..
T Consensus       228 ~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  265 (336)
T 1p5q_A          228 NN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  265 (336)
T ss_dssp             TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             Cc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence            98   689999999999999999999999999999999765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.23  E-value=1.6e-10  Score=94.18  Aligned_cols=87  Identities=17%  Similarity=0.097  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+.+++.|..... +++|.+++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~  105 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYE  105 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhccHHHHHHHHH
Confidence            455667788888888876555 499999999999999999999999999998   6899999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      ++++++|.+..
T Consensus       106 ~a~~~~p~~~~  116 (166)
T 1a17_A          106 TVVKVKPHDKD  116 (166)
T ss_dssp             HHHHHSTTCHH
T ss_pred             HHHHhCCCCHH
Confidence            99999998765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.23  E-value=3.9e-11  Score=95.32  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhh---ccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          201 QMQNYMKKKEQ---KERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       201 q~~~y~~~iel---~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      ++..|.+++++   +|..... +++|.+++++|+|++|+..|+++++++|++   +.+++++|.||..+|++++|+..|+
T Consensus         9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~   85 (117)
T 3k9i_A            9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLL   85 (117)
T ss_dssp             CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45677788887   4655554 499999999999999999999999999998   6899999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      ++++..|.+..
T Consensus        86 ~al~~~p~~~~   96 (117)
T 3k9i_A           86 KIIAETSDDET   96 (117)
T ss_dssp             HHHHHHCCCHH
T ss_pred             HHHHhCCCcHH
Confidence            99999998654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.21  E-value=2e-10  Score=98.84  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..+++|.+++++|+|++|+.+|+++++++|++   ..+++++|.+|..+|++++|+.+|++|++++|.+..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  157 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  157 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence            34599999999999999999999999999998   689999999999999999999999999999998754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.21  E-value=5.4e-10  Score=96.88  Aligned_cols=153  Identities=13%  Similarity=0.140  Sum_probs=110.2

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK  230 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~  230 (334)
                      +...+|.++..+++...+++........      ...+.+.  .+..+.++..+.+.++..|.....+ ++|.+++..|+
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTE------HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc------CchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            4456777888877777777643211110      0112222  2233455667777777777766554 99999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR  310 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~  310 (334)
                      |++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+++++++|++......- . ..+....++.++++.
T Consensus       155 ~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-~-~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK-A-TAQIAVKEYASALET  229 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-H-HHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH-H-HHHHHHhhHHHHHHH
Confidence            999999999999999998   68999999999999999999999999999999977632221 1 123344677788777


Q ss_pred             HHHhhhc
Q 019871          311 FDESFIN  317 (334)
Q Consensus       311 ~~e~~~~  317 (334)
                      |++.+..
T Consensus       230 ~~~a~~~  236 (258)
T 3uq3_A          230 LDAARTK  236 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.19  E-value=2.1e-10  Score=100.01  Aligned_cols=117  Identities=9%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHhhcc-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          196 RVREIQMQNYMKKKEQKE-RR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~-~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      +..+.++..|.+.+++.| .+ ...+++|.+++.+|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~   97 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---ANAYIGKSAAYRDMKNNQEYIA   97 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHcccHHHHHH
Confidence            334667888999999996 44 445699999999999999999999999999998   6899999999999999999999


Q ss_pred             HHHHHHHcCCCCHHH------HhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          274 ALEDALLAGYEDFKR------VRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       274 ~lekAIelgp~~~~~------i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      .|+++++++|++...      +...-.. ......+|+++++.|++.+.
T Consensus        98 ~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           98 TLTEGIKAVPGNATIEKLYAIYYLKEGQ-KFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHhH-HHHHhccHHHHHHHHHHHHh
Confidence            999999999997632      1111111 12345678888888888774

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.17  E-value=1.7e-10  Score=93.33  Aligned_cols=94  Identities=15%  Similarity=0.159  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      ..+.+|..+++.|++++|+..|+++++++|++   +.+|+++|.+|..+|++++|+.+|++|++++|++...... -.. 
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~-la~-   93 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA-LAV-   93 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-
Confidence            45799999999999999999999999999998   6899999999999999999999999999999998763221 111 


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 019871          297 NLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .+....++.+++..|++.+
T Consensus        94 ~~~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           94 SHTNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            2334456777777776655

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.17  E-value=1.3e-10  Score=101.75  Aligned_cols=152  Identities=9%  Similarity=0.011  Sum_probs=96.7

Q ss_pred             hhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhc----------------hhhhhhh--HHHHHHHHHHHHHhhccCH
Q 019871          157 RVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERN----------------SGVISNR--VREIQMQNYMKKKEQKERR  215 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n----------------~g~~~~~--l~e~q~~~y~~~iel~~~~  215 (334)
                      ..|..++..+++.++++...   ++.... ..++..                .|.+...  ..+.++..|.++++++|++
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   87 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALNIDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN   87 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            35666777777777776422   222221 123333                5544433  3477789999999999998


Q ss_pred             HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC--hHHHHHHHHHHHHcCCCCHHHHhcC
Q 019871          216 EQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ--VKAGLSALEDALLAGYEDFKRVRTD  292 (334)
Q Consensus       216 ~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~--~eeAl~~lekAIelgp~~~~~i~~D  292 (334)
                      ...+ ++|.+++..|++++|+.+|+++++++|++   +.+|+++|.+|...|+  .+.+...+++++...|....+... 
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-  163 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD-  163 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH-
Confidence            7765 99999999999999999999999999998   6788888888766543  344555666655433322111111 


Q ss_pred             hhhHHHhcChHHHHHHHHHHHhh
Q 019871          293 PDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       293 pdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                       .+..+. ..+|.+++..|++.+
T Consensus       164 -g~~~~~-~~~~~~A~~~~~~al  184 (208)
T 3urz_A          164 -GLSKLF-TTRYEKARNSLQKVI  184 (208)
T ss_dssp             -HHHHHH-HHTHHHHHHHHHHHT
T ss_pred             -HHHHHH-ccCHHHHHHHHHHHH
Confidence             222111 245666666666665

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.17  E-value=4.8e-10  Score=96.04  Aligned_cols=129  Identities=17%  Similarity=0.189  Sum_probs=102.0

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHH
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYE  232 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ye  232 (334)
                      -..|.++...+++..+++........ ...++.+.|.+....  .+.++..|.+++++.|.....+ ++|.+++++|+|+
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence            45788888888888888743322211 123455566555433  4667888999999999876654 9999999999999


Q ss_pred             HHHHHHHHHHhcCCCCC-------------cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          233 VAREKFESVLGSKPTPE-------------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       233 eAl~~fekALeldP~~~-------------e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      +|+..|++++++.|++.             ....+|+++|.+|..+|++++|+.+|++|++++|.+
T Consensus        89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            99999999999999863             123799999999999999999999999999999974

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=3e-10  Score=104.50  Aligned_cols=166  Identities=11%  Similarity=0.003  Sum_probs=114.4

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcHHH-------HHHHhhchhhhhhh---HHHHHHHHHHHHHhhccCH------H
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSEKE-------IIRAERNSGVISNR---VREIQMQNYMKKKEQKERR------E  216 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~ek~-------~~~a~~n~g~~~~~---l~e~q~~~y~~~iel~~~~------~  216 (334)
                      +...+|.++..++++.++++... ++....       ....+.+.|.++..   ..+.++..|.+++++.|..      .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            45678889999988888887422 221110       12345566766643   3577788999999887742      2


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhc
Q 019871          217 Q-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRT  291 (334)
Q Consensus       217 ~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~----~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~  291 (334)
                      . ..++|.++.++|+|++|+..|++++++.|++...    ..+|+++|.||..+|++++|+.+|+++++++|...... .
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-~  237 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-E  237 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-H
Confidence            2 3489999999999999999999999999987431    12789999999999999999999999999999854311 1


Q ss_pred             ChhhHHH------hcChHHHHHHHHHHHhhhchhH
Q 019871          292 DPDLENL------RASEEFDVLLKRFDESFINENA  320 (334)
Q Consensus       292 Dpdl~~L------r~dp~F~~lL~~~~e~~~~~~a  320 (334)
                      ...+..+      ....+|+++++.|++.+..+.+
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence            1111111      1346799999999887655443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.16  E-value=1.3e-10  Score=115.08  Aligned_cols=154  Identities=8%  Similarity=-0.050  Sum_probs=115.8

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhh-----------HHHHHHHHHHHHHhhccCHHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNR-----------VREIQMQNYMKKKEQKERREQDL  219 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~-----------l~e~q~~~y~~~iel~~~~~~~~  219 (334)
                      +...+|.++..++++..+++...   ++...  ..++.+.|.++..           ..+.++..|.+++++.|++...+
T Consensus       139 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  216 (474)
T 4abn_A          139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW  216 (474)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            44568889999888888887422   22222  1344455555433           34667889999999999876665


Q ss_pred             -HHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 -REGLQLYRT--------GKYEVAREKFESVLGSKP---TPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 -nlG~al~~~--------g~yeeAl~~fekALeldP---~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                       ++|.++..+        |+|++|+.+|+++++++|   ++   +.+|+++|.+|..+|++++|+.+|++|++++|++..
T Consensus       217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN---PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence             999999999        999999999999999999   76   789999999999999999999999999999999875


Q ss_pred             HHhcChhhHHHhcChHHHHHHHHHHHh
Q 019871          288 RVRTDPDLENLRASEEFDVLLKRFDES  314 (334)
Q Consensus       288 ~i~~Dpdl~~Lr~dp~F~~lL~~~~e~  314 (334)
                      ....-.  ..+....++.++++.+.+.
T Consensus       294 a~~~l~--~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          294 PQQREQ--QLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHhccc
Confidence            221111  1223345777787776554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.15  E-value=7.5e-10  Score=102.77  Aligned_cols=148  Identities=11%  Similarity=0.059  Sum_probs=105.1

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhc---HHHHHHHhhchhhhh----hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHH
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELS---EKEIIRAERNSGVIS----NRVREIQMQNYMKKKEQKERREQDL-REGLQLY  226 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~---ek~~~~a~~n~g~~~----~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~  226 (334)
                      ....|.++.++++...++.......   +... ......+.+.    .+..+.+...|.+.++..|.+...+ ++|.++.
T Consensus       133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~  211 (291)
T 3mkr_A          133 MAMTVQILLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM  211 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3456778888888887776322221   1110 0011112111    2445667788888888888877665 8999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHH-HHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHH
Q 019871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKA-GLSALEDALLAGYEDFKRVRTDPDLENLRASEEFD  305 (334)
Q Consensus       227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ee-Al~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~  305 (334)
                      ++|+|++|+..|+++++++|++   +.+|+|+|.++..+|+.++ +..+++++++++|++....      +...++..|.
T Consensus       212 ~~g~~~eA~~~l~~al~~~p~~---~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~------d~~~~~~~fd  282 (291)
T 3mkr_A          212 AQGRWEAAEGVLQEALDKDSGH---PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK------EYRAKENDFD  282 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHH
Confidence            9999999999999999999998   6799999999999999976 5688899999999976532      1233446788


Q ss_pred             HHHHHHH
Q 019871          306 VLLKRFD  312 (334)
Q Consensus       306 ~lL~~~~  312 (334)
                      +++.+|.
T Consensus       283 ~~~~~~~  289 (291)
T 3mkr_A          283 RLVLQYA  289 (291)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHcC
Confidence            8887774

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=5.3e-11  Score=123.42  Aligned_cols=154  Identities=10%  Similarity=0.040  Sum_probs=115.6

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRTGK  230 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~  230 (334)
                      ...|.++..++++.++++......+..  ...++.+.|.++...  .+.++..|.++++++|++... +++|.++.++|+
T Consensus       437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~  516 (681)
T 2pzi_A          437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN  516 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence            446778888888888887433222221  235667777666555  467789999999999987665 499999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhc-------ChH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRA-------SEE  303 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~-------dp~  303 (334)
                      |++ +..|++|++++|++   ..+|+|+|.+|..+|++++|+.+|++|++++|++.... .......+..       ..+
T Consensus       517 ~~~-~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~-~~~~~~~~~~~~~~~~~~~~  591 (681)
T 2pzi_A          517 TDE-HKFYQTVWSTNDGV---ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR-LTSAVTLLSGRSTSEVTEEQ  591 (681)
T ss_dssp             CCT-TCHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH-HHHHHHTC-------CCHHH
T ss_pred             hHH-HHHHHHHHHhCCch---HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH-HHHHHHHHccCCCCCCCHHH
Confidence            999 99999999999998   67999999999999999999999999999999865522 1222221111       256


Q ss_pred             HHHHHHHHHHh
Q 019871          304 FDVLLKRFDES  314 (334)
Q Consensus       304 F~~lL~~~~e~  314 (334)
                      |.++++.+.+.
T Consensus       592 ~~~A~~~l~~~  602 (681)
T 2pzi_A          592 IRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHhhC
Confidence            77777777554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.14  E-value=3.7e-10  Score=111.59  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=83.6

Q ss_pred             HHhhchhhhhhh--HHHHHHHHHHHHHhhccCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 019871          185 RAERNSGVISNR--VREIQMQNYMKKKEQKERR----------------EQDLREGLQLYRTGKYEVAREKFESVLGSKP  246 (334)
Q Consensus       185 ~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~----------------~~~~nlG~al~~~g~yeeAl~~fekALeldP  246 (334)
                      ..+++.|+....  ..+.++..|.+++++.|..                ...+++|.+++++|+|++|+.+|++||+++|
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            456666655543  3577889999999998886                3345999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          247 TPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       247 ~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++   ..+||++|.||..+|++++|+.+|++|++++|++..
T Consensus       349 ~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          349 AN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             cc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            98   689999999999999999999999999999998653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.14  E-value=3.9e-10  Score=94.12  Aligned_cols=94  Identities=16%  Similarity=0.121  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      ..+.+|.++++.|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++||+++|.+...... -.. 
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~-   87 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR-LGL-   87 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-
Confidence            45699999999999999999999999999998   6899999999999999999999999999999998763322 121 


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 019871          297 NLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .+....+|.++++.|++.+
T Consensus        88 ~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHH
Confidence            2344567888888888776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.13  E-value=5e-10  Score=88.38  Aligned_cols=89  Identities=11%  Similarity=0.075  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      +.++..|.+.++..|+..    ..+.+|.++++.|+|++|+..|+++++.+|++...+.+++++|.||..+|++++|+..
T Consensus        19 ~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~   98 (129)
T 2xev_A           19 DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT   98 (129)
T ss_dssp             HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            445566777777777765    4569999999999999999999999999999854357899999999999999999999


Q ss_pred             HHHHHHcCCCCHH
Q 019871          275 LEDALLAGYEDFK  287 (334)
Q Consensus       275 lekAIelgp~~~~  287 (334)
                      |+++++..|++..
T Consensus        99 ~~~~~~~~p~~~~  111 (129)
T 2xev_A           99 LQQVATQYPGSDA  111 (129)
T ss_dssp             HHHHHHHSTTSHH
T ss_pred             HHHHHHHCCCChH
Confidence            9999999998654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.12  E-value=1.7e-09  Score=95.06  Aligned_cols=99  Identities=19%  Similarity=0.192  Sum_probs=84.3

Q ss_pred             Hhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871          186 AERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY  262 (334)
Q Consensus       186 a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay  262 (334)
                      .+.+.|.+..  +..+.+...|.+.+++.|.....+ ++|.+++..|+|++|+..|+++++++|++   ..+|+++|.+|
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~  121 (275)
T 1xnf_A           45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHH
Confidence            3444444443  334667788999999999876654 99999999999999999999999999998   57999999999


Q ss_pred             HHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          263 SKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       263 ~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..+|++++|+..|+++++++|.+..
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~  146 (275)
T 1xnf_A          122 YYGGRDKLAQDDLLAFYQDDPNDPF  146 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCChH
Confidence            9999999999999999999999764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.12  E-value=3.1e-10  Score=86.47  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=72.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV-ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLEN  297 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~-a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~  297 (334)
                      +++|..+++.|+|++|+..|+++++.+|++   .. +|+++|.||..+|++++|+.+|++|++++|++......      
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence            578999999999999999999999999998   67 99999999999999999999999999999997653211      


Q ss_pred             HhcChHHHHHHHHHHHhh
Q 019871          298 LRASEEFDVLLKRFDESF  315 (334)
Q Consensus       298 Lr~dp~F~~lL~~~~e~~  315 (334)
                          ..+.+++..|++..
T Consensus        75 ----~~~~~a~~~~~~~~   88 (99)
T 2kc7_A           75 ----KMVMDILNFYNKDM   88 (99)
T ss_dssp             ----HHHHHHHHHHCCTT
T ss_pred             ----HHHHHHHHHHHHHh
Confidence                35677777776554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.12  E-value=2.6e-10  Score=89.63  Aligned_cols=81  Identities=16%  Similarity=0.060  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      ++..|.+.++.+|.+... +++|.+++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|++|+
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346788888899987665 499999999999999999999999999998   6899999999999999999999999999


Q ss_pred             HcCCC
Q 019871          280 LAGYE  284 (334)
Q Consensus       280 elgp~  284 (334)
                      ++.|.
T Consensus        81 ~~~~~   85 (115)
T 2kat_A           81 AAAQS   85 (115)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            99775

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.12  E-value=3.7e-10  Score=90.07  Aligned_cols=84  Identities=12%  Similarity=0.078  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+.+++.|.....+ ++|.+++.+|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~  101 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQ  101 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4556677888888888876654 99999999999999999999999999998   6799999999999999999999999


Q ss_pred             HHHHcCCC
Q 019871          277 DALLAGYE  284 (334)
Q Consensus       277 kAIelgp~  284 (334)
                      +|++++|+
T Consensus       102 ~a~~~~p~  109 (137)
T 3q49_B          102 RAYSLAKE  109 (137)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHChh
Confidence            99999876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.10  E-value=5.2e-10  Score=87.58  Aligned_cols=85  Identities=11%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..|.+.++..|..... +++|.+++..|++++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|++
T Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~  109 (133)
T 2lni_A           33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQK  109 (133)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44556667777777766554 489999999999999999999999999987   67999999999999999999999999


Q ss_pred             HHHcCCCCH
Q 019871          278 ALLAGYEDF  286 (334)
Q Consensus       278 AIelgp~~~  286 (334)
                      +++++|.+.
T Consensus       110 ~~~~~p~~~  118 (133)
T 2lni_A          110 ALDLDSSCK  118 (133)
T ss_dssp             HHHHCGGGT
T ss_pred             HHHhCCCch
Confidence            999988753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.10  E-value=3e-10  Score=87.12  Aligned_cols=67  Identities=19%  Similarity=0.313  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ...+++|.+++..|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++|++++|++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            345699999999999999999999999999998   6899999999999999999999999999999986

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.10  E-value=2e-10  Score=89.53  Aligned_cols=70  Identities=11%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             ccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          212 KERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       212 ~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +|++.. .+++|.++++.|+|++|+..|+++++++|++   ..+|+++|.||..+|++++|+.+|++|+++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            455544 4599999999999999999999999999998   579999999999999999999999999998664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.10  E-value=2.4e-09  Score=99.25  Aligned_cols=155  Identities=11%  Similarity=0.075  Sum_probs=107.6

Q ss_pred             HhhhhHHHHhhcccchhhhhch---hcHHHHHHHhhc----------hhhh--hhhHHHHHHHHHHHHHhhccC--HHH-
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGE---LSEKEIIRAERN----------SGVI--SNRVREIQMQNYMKKKEQKER--REQ-  217 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~---l~ek~~~~a~~n----------~g~~--~~~l~e~q~~~y~~~iel~~~--~~~-  217 (334)
                      ..+|.++..++++.++++....   +.... ...+.+          .+.+  ..+..+.++..|.+.+++.|.  +.. 
T Consensus       137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  215 (365)
T 4eqf_A          137 MALAVSYTNTSHQQDACEALKNWIKQNPKY-KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL  215 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhCccc-hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence            4567777777777777663221   11111 001111          1222  234456677888899999887  544 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLEN  297 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~  297 (334)
                      .+++|.++.+.|+|++|+..|+++++++|++   +.+|+++|.+|..+|++++|+..|++|++++|++......- .. .
T Consensus       216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~-~  290 (365)
T 4eqf_A          216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL-GI-S  290 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HH-H
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH-HH-H
Confidence            4599999999999999999999999999998   68999999999999999999999999999999976532221 11 1


Q ss_pred             HhcChHHHHHHHHHHHhhh
Q 019871          298 LRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       298 Lr~dp~F~~lL~~~~e~~~  316 (334)
                      +....++.+++..|++.+.
T Consensus       291 ~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          291 CINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             HHHHTCCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            2233466677776666653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=1.3e-09  Score=83.03  Aligned_cols=87  Identities=15%  Similarity=0.099  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.+...|.+.++..|..... +++|.+++..|+|++|+..|+++++++|++   ..+++++|.+|..+|++++|+.+|+
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~   96 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYE   96 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            345667777888888876555 499999999999999999999999999998   6799999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      ++++++|.+..
T Consensus        97 ~~~~~~~~~~~  107 (118)
T 1elw_A           97 EGLKHEANNPQ  107 (118)
T ss_dssp             HHHTTCTTCHH
T ss_pred             HHHHcCCCCHH
Confidence            99999998654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=8.4e-10  Score=103.38  Aligned_cols=86  Identities=13%  Similarity=0.128  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..|.+++++.|+....+ ++|.++++.|++++|+..|+++++++|++   +.+|+++|.+|...|++++|+..|++
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~  296 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---PDAYCNLANALKEKGSVAEAEDCYNT  296 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445566777777777655443 77777777888888888888888777776   56777778777777888888888888


Q ss_pred             HHHcCCCCHH
Q 019871          278 ALLAGYEDFK  287 (334)
Q Consensus       278 AIelgp~~~~  287 (334)
                      ++++.|.+..
T Consensus       297 al~~~p~~~~  306 (388)
T 1w3b_A          297 ALRLCPTHAD  306 (388)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHhhCcccHH
Confidence            8777777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.09  E-value=4.1e-10  Score=93.80  Aligned_cols=94  Identities=13%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGS------------------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALel------------------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      ...++|..+++.|+|++|+..|++++++                  +|.+   ..+|+|+|.||.++|++++|+.+|++|
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN---IPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH---HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH---HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4559999999999999999999999999                  5554   679999999999999999999999999


Q ss_pred             HHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          279 LLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       279 Ielgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      |+++|.+...+..- . ..+....+|.+++..|++.+
T Consensus        90 l~~~p~~~~a~~~~-g-~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           90 LKREETNEKALFRR-A-KARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HHHSTTCHHHHHHH-H-HHHHHTTCHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHH-H-HHHHHHhcHHHHHHHHHHHH
Confidence            99999988733221 1 12445578999999998887

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.09  E-value=3.3e-09  Score=86.77  Aligned_cols=131  Identities=11%  Similarity=0.081  Sum_probs=98.8

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQD-LREGLQLYRT  228 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~  228 (334)
                      +....|.++...++...+++.........  ....+...+.+.  .+..+.+...+.+.++..|..... +.+|..++..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            44567778888888887776432211110  112233334333  233455677788888888876555 4999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |++++|+..|+++++.+|++   ..+++++|.+|..+|++++|+..++++++.+|.+..
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  145 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK  145 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH
Confidence            99999999999999999998   689999999999999999999999999999998754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-09  Score=87.04  Aligned_cols=86  Identities=9%  Similarity=0.059  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      +.++..|.+.+++.|+.    ...+++|.+++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+
T Consensus        45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~  121 (148)
T 2dba_A           45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVLD  121 (148)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence            34556677777777774    334599999999999999999999999999998   68999999999999999999999


Q ss_pred             HHHHHHcCCCCHH
Q 019871          275 LEDALLAGYEDFK  287 (334)
Q Consensus       275 lekAIelgp~~~~  287 (334)
                      |+++++++|++..
T Consensus       122 ~~~al~~~p~~~~  134 (148)
T 2dba_A          122 LQRCVSLEPKNKV  134 (148)
T ss_dssp             HHHHHHHCSSCHH
T ss_pred             HHHHHHcCCCcHH
Confidence            9999999998654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.08  E-value=2.2e-10  Score=113.44  Aligned_cols=156  Identities=10%  Similarity=-0.014  Sum_probs=116.1

Q ss_pred             HHhhhhHHHHhhcc-cchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHHHHHHHHHHc-
Q 019871          155 RQRVGPLLMKMQKR-YGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDLREGLQLYRT-  228 (334)
Q Consensus       155 ~~R~G~V~lkLek~-~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~nlG~al~~~-  228 (334)
                      ....|.++..++++ .++++......+.+  ...++.+.|.++...  .+.++..|.++++++|+.....++|.++..+ 
T Consensus       105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~  184 (474)
T 4abn_A          105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQ  184 (474)
T ss_dssp             HHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence            34567777777777 77776432111111  124556666665544  4667889999999999965556999999999 


Q ss_pred             --------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC--------CChHHHHHHHHHHHHcCC---CCHHHH
Q 019871          229 --------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL--------NQVKAGLSALEDALLAGY---EDFKRV  289 (334)
Q Consensus       229 --------g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l--------G~~eeAl~~lekAIelgp---~~~~~i  289 (334)
                              |+|++|+..|+++++++|++   +.+|+++|.+|..+        |++++|+.+|++|++++|   .+....
T Consensus       185 ~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  261 (474)
T 4abn_A          185 TDSGDEHSRHVMDSVRQAKLAVQMDVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH  261 (474)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred             cCChhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence                    99999999999999999998   68999999999999        999999999999999999   666532


Q ss_pred             hcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          290 RTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .. -.. .+....+|.++++.|++.+
T Consensus       262 ~~-lg~-~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          262 LN-RAT-LHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HH-HHH-HHHHTTCHHHHHHHHHHHH
T ss_pred             HH-HHH-HHHHcCCHHHHHHHHHHHH
Confidence            22 121 2333467777777777765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=1.6e-09  Score=101.50  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=106.4

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK  230 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~  230 (334)
                      ...|.++..+++...+++.........  ....+.+.|.+...  ..+.++..|.+++++.|+....+ ++|.++...|+
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  218 (388)
T 1w3b_A          139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI  218 (388)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            346666777666666665322111110  01234444444332  24566788888889999876655 99999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR  310 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~  310 (334)
                      |++|+..|+++++++|++   ..+|+++|.+|..+|++++|+..|+++++++|++......- . ..+....++.++++.
T Consensus       219 ~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~-~~~~~~g~~~~A~~~  293 (388)
T 1w3b_A          219 FDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL-A-NALKEKGSVAEAEDC  293 (388)
T ss_dssp             TTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH-H-HHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-H-HHHHHcCCHHHHHHH
Confidence            999999999999999988   67999999999999999999999999999999876532111 1 112233456666665


Q ss_pred             HHHhh
Q 019871          311 FDESF  315 (334)
Q Consensus       311 ~~e~~  315 (334)
                      |++.+
T Consensus       294 ~~~al  298 (388)
T 1w3b_A          294 YNTAL  298 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.07  E-value=1.7e-09  Score=86.14  Aligned_cols=97  Identities=20%  Similarity=0.223  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChh
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPD  294 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpd  294 (334)
                      ....+.+|..++..|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+.+|++|++++|.+...... -.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~   84 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-LG   84 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH-HH
Confidence            3455699999999999999999999999999998   6899999999999999999999999999999997763221 11


Q ss_pred             hHHHhcChHHHHHHHHHHHhhh
Q 019871          295 LENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       295 l~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      . .+....+|.+++..|.+.+.
T Consensus        85 ~-~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 Q-CQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             H-HHHHTTCHHHHHHHHHHHHH
T ss_pred             H-HHHHHhhHHHHHHHHHHHHH
Confidence            1 23345677888877777663

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.06  E-value=1.2e-09  Score=82.82  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHC-CChHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPT--PEESSVASYNVACCYSKL-NQVKAGLS  273 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~--~~e~~~a~yNlA~ay~~l-G~~eeAl~  273 (334)
                      .+.++..|.+.+++.|..... +++|.+++..|+|++|+..|+++++++|+  +   ..+|+++|.+|..+ |++++|++
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN---KDVWAAKADALRYIEGKEVEAEI   98 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC---HHHHHHHHHHHTTCSSCSHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch---HHHHHHHHHHHHHHhCCHHHHHH
Confidence            345667777788888876554 48999999999999999999999999998  6   67899999999999 99999999


Q ss_pred             HHHHHHHcCCCC
Q 019871          274 ALEDALLAGYED  285 (334)
Q Consensus       274 ~lekAIelgp~~  285 (334)
                      +++++++.+|..
T Consensus        99 ~~~~~~~~~p~~  110 (112)
T 2kck_A           99 AEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHGGGCCCC
T ss_pred             HHHHHhhcccCC
Confidence            999999988864

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.06  E-value=5.1e-09  Score=90.33  Aligned_cols=157  Identities=10%  Similarity=0.053  Sum_probs=108.2

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRT  228 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~  228 (334)
                      +....|.++...++...+++.........  ....+...+.+..  +..+.++..+.+.++..|..... +.+|.++++.
T Consensus        59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  138 (243)
T 2q7f_A           59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL  138 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            44567778888888877776432211110  0122333443332  23456677888888888876555 4999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL  308 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL  308 (334)
                      |++++|+..|+++++.+|++   ..+++++|.+|..+|++++|+..|+++++.+|.+......- . ..+....++.+++
T Consensus       139 ~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-a-~~~~~~~~~~~A~  213 (243)
T 2q7f_A          139 EQPKLALPYLQRAVELNEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA-G-VTYAYKENREKAL  213 (243)
T ss_dssp             SCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH-H-HHHHHTTCTTHHH
T ss_pred             ccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH-H-HHHHHccCHHHHH
Confidence            99999999999999999987   67999999999999999999999999999999866522111 1 1122234555555


Q ss_pred             HHHHHhh
Q 019871          309 KRFDESF  315 (334)
Q Consensus       309 ~~~~e~~  315 (334)
                      +.|++.+
T Consensus       214 ~~~~~~~  220 (243)
T 2q7f_A          214 EMLDKAI  220 (243)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.05  E-value=3.1e-09  Score=82.22  Aligned_cols=87  Identities=18%  Similarity=0.121  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+.++..|..... +.+|.+++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~  104 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYK  104 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            345667777788888876555 499999999999999999999999999998   6799999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      ++++++|.+..
T Consensus       105 ~~~~~~p~~~~  115 (131)
T 2vyi_A          105 KALELDPDNET  115 (131)
T ss_dssp             HHHHHSTTCHH
T ss_pred             HHHhcCccchH
Confidence            99999998654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.04  E-value=1.6e-09  Score=96.77  Aligned_cols=129  Identities=13%  Similarity=0.063  Sum_probs=77.6

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcH---HH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCH---H-HHHHHHHH
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSE---KE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERR---E-QDLREGLQ  224 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~e---k~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~---~-~~~nlG~a  224 (334)
                      -..|.+++..+++.++++.......   ..  ...++...|.+..  +..+.++..|.+.+++.|+.   . ..+.+|.+
T Consensus        19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~   98 (261)
T 3qky_A           19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC   98 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence            3456666666666666653221111   11  1233334444433  23355666777777776632   2 23477777


Q ss_pred             HHH--------cCCHHHHHHHHHHHHhcCCCCCcchHHH--------------HHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          225 LYR--------TGKYEVAREKFESVLGSKPTPEESSVAS--------------YNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       225 l~~--------~g~yeeAl~~fekALeldP~~~e~~~a~--------------yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      +++        .|++++|+..|+++++.+|++.....++              +++|.+|..+|++++|+..|+++++..
T Consensus        99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  178 (261)
T 3qky_A           99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY  178 (261)
T ss_dssp             HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            777        7777777777777777777764322232              777777777777777777777777777


Q ss_pred             CC
Q 019871          283 YE  284 (334)
Q Consensus       283 p~  284 (334)
                      |+
T Consensus       179 p~  180 (261)
T 3qky_A          179 PD  180 (261)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.03  E-value=1.8e-09  Score=81.78  Aligned_cols=67  Identities=15%  Similarity=0.168  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC--CHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE--DFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~--~~~  287 (334)
                      .+.+|.+++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+++++++|.  +..
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   77 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD   77 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence            3589999999999999999999999999998   679999999999999999999999999999998  543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.03  E-value=5.7e-09  Score=88.48  Aligned_cols=87  Identities=17%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRT-GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~-g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      +.+...|.+.+++.|..... +++|.+++.. |++++|+..|+++++ .|.++....+|+++|.+|..+|++++|+..|+
T Consensus        59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  137 (225)
T 2vq2_A           59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLK  137 (225)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33444455555555544333 2555555555 555555555555555 22222124455555555555555555555555


Q ss_pred             HHHHcCCCCH
Q 019871          277 DALLAGYEDF  286 (334)
Q Consensus       277 kAIelgp~~~  286 (334)
                      ++++.+|.+.
T Consensus       138 ~~~~~~~~~~  147 (225)
T 2vq2_A          138 RSLAAQPQFP  147 (225)
T ss_dssp             HHHHHSTTCH
T ss_pred             HHHHhCCCCc
Confidence            5555555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.03  E-value=2.5e-10  Score=113.76  Aligned_cols=114  Identities=14%  Similarity=0.098  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      +..+.++..|.++++++|+....+ ++|.+++++|+|++|+..|++|++++|++   +.+|+++|.+|..+|++++|+++
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~   96 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRD   96 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence            345667889999999999876665 99999999999999999999999999998   68999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHH
Q 019871          275 LEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFD  312 (334)
Q Consensus       275 lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~  312 (334)
                      |++|++++|++......-.....+....+|+++++.++
T Consensus        97 ~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           97 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999986542221111112333456666666655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.02  E-value=5.2e-09  Score=90.23  Aligned_cols=132  Identities=16%  Similarity=0.049  Sum_probs=87.6

Q ss_pred             HHHHHhhhhHHHHhhcccchhhhhchh---cHHHHHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHH-HHHHHHH
Q 019871          152 YTIRQRVGPLLMKMQKRYGKMEQTGEL---SEKEIIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQD-LREGLQL  225 (334)
Q Consensus       152 sai~~R~G~V~lkLek~~~aie~~~~l---~ek~~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al  225 (334)
                      .......|.++...+++..+++.....   .... ...+...+.+.  .+..+.++..+.+.+++.|..... +.+|.++
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            334566777888888888777642211   1111 22333344333  233466778888888888876655 4999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ...|++++|+..|+++++.+|++   ..+++++|.+|..+|++++|+..|+++++..|.+..
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  160 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE  160 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence            99999999999999999999998   679999999999999999999999999999998765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.01  E-value=2.7e-09  Score=95.25  Aligned_cols=92  Identities=12%  Similarity=0.149  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHHhhccCH---HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH------
Q 019871          195 NRVREIQMQNYMKKKEQKERR---EQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK------  264 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~---~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~------  264 (334)
                      .+..+.++..|.+.++..|..   .. .+.+|.+++++|+|++|+..|+++++++|+++....++|++|.||..      
T Consensus        28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            334466778888899988876   44 46999999999999999999999999999876657899999999999      


Q ss_pred             --CCChHHHHHHHHHHHHcCCCCH
Q 019871          265 --LNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       265 --lG~~eeAl~~lekAIelgp~~~  286 (334)
                        +|++++|+..|+++++..|++.
T Consensus       108 ~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             ccchhHHHHHHHHHHHHHHCcCch
Confidence              9999999999999999999864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.01  E-value=3.1e-09  Score=106.31  Aligned_cols=83  Identities=11%  Similarity=0.009  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      +...|.++++++|+....+ ++|.+++++|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+++|++|+
T Consensus        42 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al  118 (568)
T 2vsy_A           42 GEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAH  118 (568)
T ss_dssp             HHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444444443332 45555555555555555555555555544   3445555555555555555555555555


Q ss_pred             HcCCCCH
Q 019871          280 LAGYEDF  286 (334)
Q Consensus       280 elgp~~~  286 (334)
                      +++|++.
T Consensus       119 ~~~p~~~  125 (568)
T 2vsy_A          119 QLLPEEP  125 (568)
T ss_dssp             HHCTTCH
T ss_pred             HhCCCCH
Confidence            5555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.01  E-value=7.4e-10  Score=97.74  Aligned_cols=128  Identities=14%  Similarity=0.140  Sum_probs=96.8

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHH---H-H-HHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEK---E-I-IRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYR  227 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek---~-~-~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~  227 (334)
                      ...|.++..++++..+++......+.   . . ..++.+.|.+....  .+.++..|.+.+++.|.....+ ++|.+++.
T Consensus        41 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  120 (272)
T 3u4t_A           41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN  120 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            45677888888888887743211111   0 0 12244455444333  4667788999999998876554 99999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH-HHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVA-CCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA-~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .|+|++|+..|+++++++|++   ..+|+++| .+|.. +++++|+..|+++++++|++..
T Consensus       121 ~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~  177 (272)
T 3u4t_A          121 KGNFPLAIQYMEKQIRPTTTD---PKVFYELGQAYYYN-KEYVKADSSFVKVLELKPNIYI  177 (272)
T ss_dssp             TTCHHHHHHHHGGGCCSSCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHH
T ss_pred             ccCHHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccchH
Confidence            999999999999999999998   68999999 66665 5999999999999999998765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.00  E-value=8.4e-09  Score=90.10  Aligned_cols=130  Identities=14%  Similarity=0.073  Sum_probs=70.9

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcC
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRTG  229 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g  229 (334)
                      ....|.++...++...+++......+..  ....+...+.+..  +..+.++..|.+.+++.|..... +++|.+++..|
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  119 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK  119 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence            3455666666666666655322111100  0112222332222  22344455566666666654443 36666667777


Q ss_pred             CHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          230 KYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       230 ~yeeAl~~fekALe--ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++++|+..|+++++  .+|.+   ..+++++|.+|..+|++++|+..|+++++.+|.+..
T Consensus       120 ~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  176 (252)
T 2ho1_A          120 RYEEAYQRLLEASQDTLYPER---SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS  176 (252)
T ss_dssp             CHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHHHHHHHHHHHHhCccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence            77777777777766  44444   456666777777777777777777777766666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.99  E-value=7.2e-09  Score=79.94  Aligned_cols=64  Identities=23%  Similarity=0.343  Sum_probs=32.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .+|..+...|++++|+..|++++..+|.+   ..+++++|.+|...|++++|+..++++++.+|.+.
T Consensus        40 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           40 NLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            44555555555555555555555555544   34455555555555555555555555555554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.99  E-value=2.7e-09  Score=98.07  Aligned_cols=161  Identities=9%  Similarity=-0.094  Sum_probs=113.6

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcH--H-----HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH------H-
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE--K-----EIIRAERNSGVISNRV--REIQMQNYMKKKEQKERR------E-  216 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~e--k-----~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~------~-  216 (334)
                      ...+.|.++..++++.++++... .+..  +     ....++.+.|.++..+  .+.++..|.+++++.+..      . 
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34778999999999999988432 2221  1     1134566677666544  466778899999887642      2 


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH----
Q 019871          217 QDLREGLQLYRT-GKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR----  288 (334)
Q Consensus       217 ~~~nlG~al~~~-g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~----  288 (334)
                      ...++|.++... |+|++|+.+|++|+++.|+...   ...+++++|.+|..+|++++|+.+|++++++.|.+...    
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            234999999996 9999999999999999886531   13579999999999999999999999999999875321    


Q ss_pred             --HhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          289 --VRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       289 --i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                        +...-.+ .+...+++..++..|++.+
T Consensus       199 ~~~~~~lg~-~~~~~g~~~~A~~~~~~al  226 (292)
T 1qqe_A          199 KDYFLKKGL-CQLAATDAVAAARTLQEGQ  226 (292)
T ss_dssp             HHHHHHHHH-HHHHTTCHHHHHHHHHGGG
T ss_pred             HHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence              1111111 1233456667776666655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.99  E-value=1.7e-09  Score=90.70  Aligned_cols=86  Identities=7%  Similarity=0.009  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQ-LYRTGKY--EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~a-l~~~g~y--eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+.++..|.+.+++.|..... +++|.+ ++..|++  ++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQANYAQAIE  136 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcccHHHHHH
Confidence            456678888888888877655 499999 7799999  99999999999999998   6799999999999999999999


Q ss_pred             HHHHHHHcCCCCH
Q 019871          274 ALEDALLAGYEDF  286 (334)
Q Consensus       274 ~lekAIelgp~~~  286 (334)
                      .|+++++++|.+.
T Consensus       137 ~~~~al~~~p~~~  149 (177)
T 2e2e_A          137 LWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHTCCTTS
T ss_pred             HHHHHHhhCCCCc
Confidence            9999999999853

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.99  E-value=3e-09  Score=92.10  Aligned_cols=122  Identities=11%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             hhhHHHHhhcccchhhhhch---hcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871          158 VGPLLMKMQKRYGKMEQTGE---LSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY  231 (334)
Q Consensus       158 ~G~V~lkLek~~~aie~~~~---l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y  231 (334)
                      .+.++..+++...+++....   ..... ...+.+.|.+..  +..+.++..|.+.+++.|.....+ ++|.++++.|+|
T Consensus       111 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  189 (258)
T 3uq3_A          111 TADILTKLRNAEKELKKAEAEAYVNPEK-AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF  189 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH
Confidence            35566676666666653221   22221 233444554443  334667888999999999876654 999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      ++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|++|++++|
T Consensus       190 ~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          190 PEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence            99999999999999998   68999999999999999999999999999983

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.99  E-value=4.5e-09  Score=85.96  Aligned_cols=130  Identities=15%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRT  228 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~  228 (334)
                      +....|.++...++...+++.........  ....+.+.+.+....  .+.+...+.+.++..|..... +.+|.+++..
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  123 (186)
T 3as5_A           44 VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL  123 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc
Confidence            34567778888888777776432221110  112333444443332  355667788888888876555 4999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~  286 (334)
                      |++++|+..|+++++.+|++   ..+++++|.+|..+|++++|+.+++++++++|++.
T Consensus       124 ~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          124 GRFDEAIDSFKIALGLRPNE---GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             CcHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            99999999999999999998   68999999999999999999999999999988753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.99  E-value=7.9e-09  Score=94.91  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhhccC--HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          198 REIQMQNYMKKKEQKER--REQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~--~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      .+.++..|.+.+++.|.  ... .+++|.++++.|+|++|+..|+++++++|++   +.+|+++|.+|..+|++++|+..
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~  273 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAA  273 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence            35556777778888887  444 4588999999999999999999999999987   67899999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          275 LEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       275 lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      |+++++++|.+...... -.. .+....+|.+++..|++.+
T Consensus       274 ~~~al~~~~~~~~~~~~-l~~-~~~~~g~~~~A~~~~~~al  312 (368)
T 1fch_A          274 YRRALELQPGYIRSRYN-LGI-SCINLGAHREAVEHFLEAL  312 (368)
T ss_dssp             HHHHHHHCTTCHHHHHH-HHH-HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence            99999998876652211 111 1222345566665555554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.99  E-value=1.6e-08  Score=88.35  Aligned_cols=157  Identities=13%  Similarity=-0.002  Sum_probs=106.4

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHh--hccCHHHH-HHHHHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKE--QKERREQD-LREGLQLY  226 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~ie--l~~~~~~~-~nlG~al~  226 (334)
                      +....|.++...++..++++......+..  ....+.+.+.+..  +..+.+...+.+.++  ..|..... +.+|.+++
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~  152 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL  152 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence            33456778888888777776432211110  0122333443332  223556667777777  66666555 49999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHH
Q 019871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDV  306 (334)
Q Consensus       227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~  306 (334)
                      +.|++++|+..|+++++.+|++   ..+++++|.+|..+|++++|+..|+++++..|.+......--  ..+....++.+
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~  227 (252)
T 2ho1_A          153 QMKKPAQAKEYFEKSLRLNRNQ---PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI--RLAKVFEDRDT  227 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHH--HHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH--HHHHHccCHHH
Confidence            9999999999999999999998   679999999999999999999999999999998665322111  11222345555


Q ss_pred             HHHHHHHhh
Q 019871          307 LLKRFDESF  315 (334)
Q Consensus       307 lL~~~~e~~  315 (334)
                      +++.+++.+
T Consensus       228 A~~~~~~~~  236 (252)
T 2ho1_A          228 AASYGLQLK  236 (252)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.98  E-value=1.1e-09  Score=96.71  Aligned_cols=154  Identities=11%  Similarity=0.056  Sum_probs=102.8

Q ss_pred             hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCH----HHHHHHHHHHHHc
Q 019871          157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERR----EQDLREGLQLYRT  228 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~  228 (334)
                      +.|.++...+++..+++......+..  ....+...|.+.  .+..+.++..+.+.++..++.    ...+++|.++...
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            45666777677777666422111110  011222333333  233456677788887732221    1246999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL  308 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL  308 (334)
                      |++++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+++++++|.+...... -.. .+....+|.+++
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-l~~-~~~~~~~~~~A~  162 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE-LGQ-AYYYNKEYVKAD  162 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHH-HHH-HHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHH-HHH-HHHHHHHHHHHH
Confidence            99999999999999999998   5799999999999999999999999999999987763322 110 111122666666


Q ss_pred             HHHHHhh
Q 019871          309 KRFDESF  315 (334)
Q Consensus       309 ~~~~e~~  315 (334)
                      +.|++.+
T Consensus       163 ~~~~~a~  169 (272)
T 3u4t_A          163 SSFVKVL  169 (272)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666555

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.98  E-value=4.7e-09  Score=77.64  Aligned_cols=68  Identities=22%  Similarity=0.310  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..+++|..++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+++++++|.+..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~   78 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE   78 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence            34599999999999999999999999999998   689999999999999999999999999999998654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.97  E-value=7.7e-10  Score=104.99  Aligned_cols=68  Identities=16%  Similarity=0.130  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..+++|.+++++|+|++|+.+|+++|+++|++   ..+||++|.+|..+|++++|+.+|++|++++|++..
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~  299 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA  299 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence            45699999999999999999999999999998   689999999999999999999999999999998654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.97  E-value=2.9e-09  Score=98.60  Aligned_cols=127  Identities=15%  Similarity=0.083  Sum_probs=91.9

Q ss_pred             hhhHHHHhhcccchhhhhchhcHHH----HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871          158 VGPLLMKMQKRYGKMEQTGELSEKE----IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGK  230 (334)
Q Consensus       158 ~G~V~lkLek~~~aie~~~~l~ek~----~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~  230 (334)
                      +|.++..+++...+++......+..    ....+.+.|.+....  .+.++..|.+.+++.|+....+ ++|.++.+.|+
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  262 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR  262 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3556666666666665322111110    012334445444333  4667788999999999876655 99999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|++|+++.|+...
T Consensus       263 ~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence            999999999999999998   689999999999999999999999999999988543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.96  E-value=8.1e-09  Score=88.30  Aligned_cols=84  Identities=11%  Similarity=0.115  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      .+.++..|.+.+  ++.....+++|.++++.|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|++
T Consensus        22 ~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~   96 (213)
T 1hh8_A           22 WKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKE   96 (213)
T ss_dssp             HHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            344556666553  5555666799999999999999999999999999998   68999999999999999999999999


Q ss_pred             HHHcCCCCH
Q 019871          278 ALLAGYEDF  286 (334)
Q Consensus       278 AIelgp~~~  286 (334)
                      |+++.|.+.
T Consensus        97 al~~~~~~~  105 (213)
T 1hh8_A           97 ALIQLRGNQ  105 (213)
T ss_dssp             HHHTTTTCS
T ss_pred             HHHhCCCcc
Confidence            999988754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.96  E-value=3.6e-09  Score=102.15  Aligned_cols=87  Identities=20%  Similarity=0.187  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHh----------------hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 019871          198 REIQMQNYMKKKE----------------QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (334)
Q Consensus       198 ~e~q~~~y~~~ie----------------l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~  260 (334)
                      .+.++..|.++++                +.|..... +++|.+++++|+|++|+.+|++|++++|++   +.+|+++|.
T Consensus       239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~  315 (370)
T 1ihg_A          239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---TKALYRRAQ  315 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---HHHHHHHHH
Confidence            3455566666665                45555444 499999999999999999999999999998   689999999


Q ss_pred             HHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          261 CYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       261 ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      +|..+|++++|+.+|++|++++|++..
T Consensus       316 ~~~~~g~~~eA~~~l~~Al~l~P~~~~  342 (370)
T 1ihg_A          316 GWQGLKEYDQALADLKKAQEIAPEDKA  342 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999998654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.96  E-value=1.2e-08  Score=78.15  Aligned_cols=86  Identities=21%  Similarity=0.321  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..|.+.++..|..... +.+|.++++.|++++|+..|+++++.+|.+   ..+++++|.+|..+|++++|+..|++
T Consensus        26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~  102 (125)
T 1na0_A           26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQK  102 (125)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            44556666777777765554 589999999999999999999999999987   67999999999999999999999999


Q ss_pred             HHHcCCCCHH
Q 019871          278 ALLAGYEDFK  287 (334)
Q Consensus       278 AIelgp~~~~  287 (334)
                      +++.+|.+..
T Consensus       103 ~~~~~~~~~~  112 (125)
T 1na0_A          103 ALELDPNNAE  112 (125)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHHhCCCcHH
Confidence            9999988654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.96  E-value=5.2e-09  Score=93.97  Aligned_cols=112  Identities=13%  Similarity=0.022  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..|.+.+++.|..... +.+|.++...|+|++|+..|+++++++|++   ..+++++|.+|..+|++++|+..|++
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQ  184 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45566777777777765444 488888888888888888888888888876   45777888888888888888888888


Q ss_pred             HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +++.+|.+...... -. ..+....+|.+++..|++.+
T Consensus       185 al~~~~~~~~~~~~-l~-~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          185 ALSIAPEDPFVMHE-VG-VVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             HHTTCTTCHHHHHH-HH-HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHH-HH-HHHHHcccHHHHHHHHHHHH
Confidence            88888776542211 11 11222344555555554444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.95  E-value=2.7e-08  Score=76.59  Aligned_cols=126  Identities=21%  Similarity=0.227  Sum_probs=94.2

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRTGK  230 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~  230 (334)
                      ...|.++...++...+++.........  ....+...+.+....  .+.+...+.+.++..|..... +.+|.++.+.|+
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence            456778888888777776422111110  012233334333222  355567777888888876554 499999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +++|+..|+++++..|.+   ..+++++|.+|...|++++|+..|+++++.+|.
T Consensus        85 ~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           85 YDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            999999999999999987   679999999999999999999999999999886

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.95  E-value=7.1e-09  Score=81.01  Aligned_cols=95  Identities=17%  Similarity=0.292  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL  295 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl  295 (334)
                      ...+.+|..+++.|+|++|+..|+++++.+|++   ..+|+++|.+|..+|++++|+.+|+++++++|.+...... -..
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~   92 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR-KAA   92 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH-HHH
Confidence            344699999999999999999999999999998   6899999999999999999999999999999987653221 111


Q ss_pred             HHHhcChHHHHHHHHHHHhh
Q 019871          296 ENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~  315 (334)
                       .+....+|.++++.|++.+
T Consensus        93 -~~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           93 -ALEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             -HHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHhhHHHHHHHHHHHH
Confidence             2334467888888777766

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.95  E-value=2.5e-09  Score=101.25  Aligned_cols=105  Identities=18%  Similarity=0.256  Sum_probs=81.8

Q ss_pred             HhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chHHHHHHHHHHHHCCChHHHHHHH
Q 019871          209 KEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       209 iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e------------~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      ++.+|..... +++|.++++.|+|++|+.+|++|++++|++..            ...+|+|+|.||.++|++++|+.+|
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  219 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3334444444 59999999999999999999999999999720            0379999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          276 EDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       276 ekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ++||+++|.+...+.. ... .+....+|.+++..|++.+
T Consensus       220 ~~al~~~p~~~~a~~~-lg~-~~~~~g~~~~A~~~~~~al  257 (336)
T 1p5q_A          220 NKALELDSNNEKGLSR-RGE-AHLAVNDFELARADFQKVL  257 (336)
T ss_dssp             HHHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence            9999999998763322 121 2344567778777777766

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.94  E-value=8.4e-09  Score=86.44  Aligned_cols=110  Identities=10%  Similarity=0.104  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HHHCCCh--HHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLNQV--KAGLSALE  276 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a-y~~lG~~--eeAl~~le  276 (334)
                      ++..+.+.++.+|..... +.+|.+++..|+|++|+.+|+++++++|++   +.+|+++|.+ |...|++  ++|+..|+
T Consensus        29 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~  105 (177)
T 2e2e_A           29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMID  105 (177)
T ss_dssp             CCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            445677778888877655 499999999999999999999999999998   6899999999 8899999  99999999


Q ss_pred             HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ++++++|.+...... -.. .+....+|.+++..|++.+
T Consensus       106 ~al~~~p~~~~~~~~-la~-~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A          106 KALALDSNEITALML-LAS-DAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHH-HHH-HHHHcccHHHHHHHHHHHH
Confidence            999999997763221 111 2333467778877777766

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.94  E-value=1.4e-09  Score=112.76  Aligned_cols=112  Identities=13%  Similarity=0.036  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.++++++|++...+ ++|.+++++|+|++|+..|++|++++|++   +.+|+++|.+|..+|++++ +.+|+
T Consensus       449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~  524 (681)
T 2pzi_A          449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQ  524 (681)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHH
Confidence            4667788999999999886665 99999999999999999999999999998   5799999999999999999 99999


Q ss_pred             HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +|++++|++...... -.. .+....+++++++.|++.+
T Consensus       525 ~al~~~P~~~~a~~~-lg~-~~~~~g~~~~A~~~~~~al  561 (681)
T 2pzi_A          525 TVWSTNDGVISAAFG-LAR-ARSAEGDRVGAVRTLDEVP  561 (681)
T ss_dssp             HHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHhCCchHHHHHH-HHH-HHHHcCCHHHHHHHHHhhc
Confidence            999999998773322 221 2344567888888888776

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.94  E-value=2.8e-09  Score=98.13  Aligned_cols=86  Identities=12%  Similarity=0.073  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      ..+.++..|.+++++.|.....+ ++|.+++++|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~   95 (281)
T 2c2l_A           19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANL   95 (281)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34557788889999999876665 99999999999999999999999999998   689999999999999999999999


Q ss_pred             HHHHHcCCCC
Q 019871          276 EDALLAGYED  285 (334)
Q Consensus       276 ekAIelgp~~  285 (334)
                      ++|++++|++
T Consensus        96 ~~al~l~p~~  105 (281)
T 2c2l_A           96 QRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHhCccc
Confidence            9999999865

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.93  E-value=1.6e-08  Score=79.49  Aligned_cols=96  Identities=14%  Similarity=0.099  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC---HHHHhcChh
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED---FKRVRTDPD  294 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~---~~~i~~Dpd  294 (334)
                      .+++|..+++.|+|++|+..|+++++.+|+++....+++++|.||..+|++++|+.+|+++++.+|++   .... ..-.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL-LKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH-HHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH-HHHH
Confidence            56899999999999999999999999999985333799999999999999999999999999999987   3311 1111


Q ss_pred             hHHHhcChHHHHHHHHHHHhh
Q 019871          295 LENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       295 l~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      . .+....++.++++.|++.+
T Consensus        84 ~-~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           84 L-SQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             H-HHHHTTCHHHHHHHHHHHH
T ss_pred             H-HHHHcCCHHHHHHHHHHHH
Confidence            1 2233456777776666655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.93  E-value=1e-08  Score=78.03  Aligned_cols=95  Identities=13%  Similarity=0.123  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL  295 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl  295 (334)
                      ...+.+|..++..|+|++|+..|+++++.+|++   ..+|+++|.+|..+|++++|+..++++++.+|.+......- . 
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-a-   79 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK-A-   79 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-H-
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH-H-
Confidence            345689999999999999999999999999998   68999999999999999999999999999999876532211 1 


Q ss_pred             HHHhcChHHHHHHHHHHHhh
Q 019871          296 ENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ..+....++.++++.|++.+
T Consensus        80 ~~~~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           80 AALEFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            12334456777777777766

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.93  E-value=6e-08  Score=87.57  Aligned_cols=130  Identities=16%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcH---HHHHHHhhch------------hhh--hhhHHHHHHHHHHHHHhhcc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSE---KEIIRAERNS------------GVI--SNRVREIQMQNYMKKKEQKE  213 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~e---k~~~~a~~n~------------g~~--~~~l~e~q~~~y~~~iel~~  213 (334)
                      +....|.++..++++..+++...   .+..   .. ...+...            +.+  ..+..+.++..+.+.++..|
T Consensus        73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A           73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            34567778888888777776322   2222   21 1111111            222  22334556777888888888


Q ss_pred             CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          214 RREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       214 ~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .....+ .+|.++...|++++|+..|+++++++|++   +.+|+++|.+|..+|++++|+..|+++++.+|++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  223 (359)
T 3ieg_A          152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR  223 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence            776654 99999999999999999999999999998   679999999999999999999999999999998765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.93  E-value=3.4e-08  Score=88.63  Aligned_cols=156  Identities=10%  Similarity=0.028  Sum_probs=106.5

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG  229 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g  229 (334)
                      ....|.++..++++..+++.........  ....+...|.+.  .+..+.++..+.+.++..|.....+ ++|.+++..|
T Consensus       128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            3457777888887777776432111110  011222233332  2334566778888888888876554 9999999999


Q ss_pred             CHHHHHHHHHHHHhcC---------CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhc
Q 019871          230 KYEVAREKFESVLGSK---------PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRA  300 (334)
Q Consensus       230 ~yeeAl~~fekALeld---------P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~  300 (334)
                      +|++|+..|++++++.         |.+   ..+|+++|.+|..+|++++|+.+|+++++++|++......- . ..+..
T Consensus       208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l-a-~~~~~  282 (330)
T 3hym_B          208 EWKTAEKWFLDALEKIKAIGNEVTVDKW---EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI-G-YIHSL  282 (330)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCSCTTTTC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHH-H-HHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhccccccccHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHH-H-HHHHH
Confidence            9999999999999886         333   46899999999999999999999999999998865522211 1 11223


Q ss_pred             ChHHHHHHHHHHHhh
Q 019871          301 SEEFDVLLKRFDESF  315 (334)
Q Consensus       301 dp~F~~lL~~~~e~~  315 (334)
                      ..++.++++.|++.+
T Consensus       283 ~g~~~~A~~~~~~al  297 (330)
T 3hym_B          283 MGNFENAVDYFHTAL  297 (330)
T ss_dssp             HTCHHHHHHHHHTTT
T ss_pred             hccHHHHHHHHHHHH
Confidence            356777777777766

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.92  E-value=1.3e-08  Score=89.44  Aligned_cols=114  Identities=12%  Similarity=0.094  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHhhc----cCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871          197 VREIQMQNYMKKKEQK----ERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG  271 (334)
Q Consensus       197 l~e~q~~~y~~~iel~----~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA  271 (334)
                      ..+.++..|.+.++..    |.... .+.+|.+++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHccCHHHH
Confidence            3455666777777653    23333 3599999999999999999999999999998   68999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          272 LSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       272 l~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +.+|++|++++|.+......- . ..+....+|.++++.|++.+
T Consensus        97 ~~~~~~al~~~~~~~~~~~~l-a-~~~~~~g~~~~A~~~~~~a~  138 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNR-G-IALYYGGRDKLAQDDLLAFY  138 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHH-H-HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHH-H-HHHHHhccHHHHHHHHHHHH
Confidence            999999999999876522211 1 12333456777777776665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.92  E-value=3.2e-08  Score=83.81  Aligned_cols=131  Identities=11%  Similarity=-0.010  Sum_probs=96.9

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh---hHHHHHHHHHHHHHh--hccCHHHH-HHHHHHHH
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN---RVREIQMQNYMKKKE--QKERREQD-LREGLQLY  226 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~---~l~e~q~~~y~~~ie--l~~~~~~~-~nlG~al~  226 (334)
                      ....|.++..+++...+++.........  ....+.+.+.+..   +..+.++..+.+.++  ..|..... +++|.++.
T Consensus        45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (225)
T 2vq2_A           45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA  124 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence            3456777888888777776432111110  0122334444433   334556677778877  45555444 59999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC-CCHHH
Q 019871          227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY-EDFKR  288 (334)
Q Consensus       227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp-~~~~~  288 (334)
                      +.|++++|+..|+++++.+|++   ..+++++|.+|..+|++++|+..++++++.+| .+...
T Consensus       125 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  184 (225)
T 2vq2_A          125 KQGQFGLAEAYLKRSLAAQPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD  184 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence            9999999999999999999998   68999999999999999999999999999999 76553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.92  E-value=2.3e-08  Score=90.30  Aligned_cols=131  Identities=12%  Similarity=0.124  Sum_probs=98.9

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhcc---CHHHHH-HH----
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKE---RREQDL-RE----  221 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~---~~~~~~-nl----  221 (334)
                      +....|.++..++++..+++.........  ....+...|.+....  .+.++..|.+.+++.|   .....+ .+    
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  118 (359)
T 3ieg_A           39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD  118 (359)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence            34457788888888888877433222111  112344444444333  4566788888888888   554443 33    


Q ss_pred             --------HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          222 --------GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       222 --------G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                              |..++..|++++|+..|+++++.+|++   ..+++++|.+|..+|++++|+..|+++++.+|.+..
T Consensus       119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  189 (359)
T 3ieg_A          119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD---AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE  189 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence                    799999999999999999999999998   689999999999999999999999999999998776

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1.3e-08  Score=81.11  Aligned_cols=110  Identities=23%  Similarity=0.313  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL  295 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl  295 (334)
                      ...+.+|..++..|+|++|+..|+++++++|++.....+|+++|.+|..+|++++|+.+|+++++++|.+...... -..
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~a~  107 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR-RSQ  107 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH-HHH
Confidence            4456999999999999999999999999999852224799999999999999999999999999999987653221 111


Q ss_pred             HHHhcChHHHHHHHHHHHhhh----chhHHHHHHHh
Q 019871          296 ENLRASEEFDVLLKRFDESFI----NENAINAIKSL  327 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~~----~~~ai~~~k~~  327 (334)
                       .+....+|.++++.|++.+.    +..+...+..+
T Consensus       108 -~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          108 -ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             -HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             -HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence             23334567888887777763    33444444444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.91  E-value=1.8e-08  Score=90.26  Aligned_cols=114  Identities=11%  Similarity=0.074  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          197 VREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      ..+.+...+.+.++..|..... +.+|.++++.|++++|+..|+++++.+|++   ..+|+++|.+|...|++++|+..|
T Consensus       153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3455667777888888876554 488999999999999999999999999987   678999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          276 EDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       276 ekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +++++.+|.+...... -. ..+....++.++++.|++.+
T Consensus       230 ~~a~~~~~~~~~~~~~-l~-~~~~~~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          230 NRALDINPGYVRVMYN-MA-VSYSNMSQYDLAAKQLVRAI  267 (327)
T ss_dssp             HHHHHHCTTCHHHHHH-HH-HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHH-HH-HHHHHhccHHHHHHHHHHHH
Confidence            9999998886652221 11 11233456666666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.90  E-value=2.1e-08  Score=102.54  Aligned_cols=145  Identities=8%  Similarity=-0.008  Sum_probs=116.5

Q ss_pred             HHhhchhhhhhhH------------HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCC
Q 019871          185 RAERNSGVISNRV------------REIQMQNYMKKKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGSKPTPE  249 (334)
Q Consensus       185 ~a~~n~g~~~~~l------------~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g--~yeeAl~~fekALeldP~~~  249 (334)
                      .+|...+.+...+            .+.++..+.++++.+|+...+| ++|.++.+.+  +|++|++.|++++++||.+ 
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-  142 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-  142 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-
Confidence            4566677666554            3556788999999999987776 9999999999  7799999999999999999 


Q ss_pred             cchHHHHHHHHHHHHCC-ChHHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhc-----------ChHHHHHHHHHHHhh-
Q 019871          250 ESSVASYNVACCYSKLN-QVKAGLSALEDALLAGYEDFK-RVRTDPDLENLRA-----------SEEFDVLLKRFDESF-  315 (334)
Q Consensus       250 e~~~a~yNlA~ay~~lG-~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~-----------dp~F~~lL~~~~e~~-  315 (334)
                        ..+|++++.++..+| .+++++++++++|+.+|.|.. |...---+..+..           ...+++.++.+++.+ 
T Consensus       143 --~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          143 --FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             --HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             --ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence              689999999999999 999999999999999999887 5444433444321           256888888888887 


Q ss_pred             ---hchhHHHHHHHhhcccC
Q 019871          316 ---INENAINAIKSLFGLLD  332 (334)
Q Consensus       316 ---~~~~ai~~~k~~~~~~~  332 (334)
                         .++.|-.....+++.++
T Consensus       221 ~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          221 TDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             HCSSCSHHHHHHHHHHSCCC
T ss_pred             hCCCCccHHHHHHHHHhcCC
Confidence               46677777777776543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.90  E-value=3.9e-08  Score=91.09  Aligned_cols=128  Identities=11%  Similarity=0.019  Sum_probs=96.0

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHHHHHHHH----HH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDLREGLQL----YR  227 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~nlG~al----~~  227 (334)
                      +....|.++...++..++++.... ..  ...++.+.+.+..  +..+.+...+.+.+++.|... ..+++.++    ..
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~  178 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ-GD--SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAG  178 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT-CC--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC-CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHHHHhC
Confidence            345678888888888888875332 11  1223334444443  334667788888888888753 23443332    34


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      .|++++|+..|+++++.+|++   +.+|+++|.||..+|++++|+..|++||+++|++...
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            599999999999999999998   6899999999999999999999999999999998774

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.89  E-value=1.3e-08  Score=89.63  Aligned_cols=65  Identities=9%  Similarity=0.057  Sum_probs=33.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+|..+++.|+|++|+..|+++++..|+++....+++++|.||.++|++++|++.+++++..+|.
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            44555555555555555555555555554322244555555555555555555555555555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.89  E-value=1.4e-08  Score=78.39  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      ..+.+|..++..|+|++|+..|+++++.+|++   ..+|+++|.+|..+|++++|+..++++++++|.+......- . .
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~-~   88 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM-G-L   88 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-H-H
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH-H-H
Confidence            34599999999999999999999999999998   68999999999999999999999999999999876532211 1 1


Q ss_pred             HHhcChHHHHHHHHHHHhhh
Q 019871          297 NLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      .+....+|.++++.|++.+.
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~  108 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALE  108 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            23345677888777777663

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.89  E-value=4.7e-09  Score=103.65  Aligned_cols=107  Identities=18%  Similarity=0.199  Sum_probs=83.3

Q ss_pred             HHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chHHHHHHHHHHHHCCChHHHHHH
Q 019871          208 KKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       208 ~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e------------~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      .++.+|..... +++|..+++.|+|++|+.+|++|++++|++..            ...+|+|+|.||.++|++++|+.+
T Consensus       260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  339 (457)
T 1kt0_A          260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC  339 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            33444444444 49999999999999999999999999999720            137999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          275 LEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       275 lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |++||+++|.+...+.. ... .+....+|++++..|++.+.
T Consensus       340 ~~~al~~~p~~~~a~~~-~g~-a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          340 CDKALGLDSANEKGLYR-RGE-AQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             HHHHHHHSTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCccHHHHHH-HHH-HHHHccCHHHHHHHHHHHHH
Confidence            99999999998763322 122 23345678888888887763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.88  E-value=2.9e-08  Score=85.20  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-------------hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-------------SVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~-------------~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+++|..++..|+|++|+..|++++++.|++++.             ..+|+++|.||..+|++++|+.+|++|++++|.
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  120 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN  120 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            4589999999999999999999999999987310             179999999999999999999999999999998


Q ss_pred             CHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          285 DFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       285 ~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +...+..- .. .+....+|.++++.|++.+
T Consensus       121 ~~~~~~~l-g~-~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A          121 NVKALYKL-GV-ANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             CHHHHHHH-HH-HHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHH-HH-HHHHcccHHHHHHHHHHHH
Confidence            77632221 11 1223346777777777665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.88  E-value=6.4e-08  Score=91.50  Aligned_cols=159  Identities=14%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH------------
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL------------  219 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~------------  219 (334)
                      ...|.++..+++...+++......+..  ....+.+.+.+..  +..+.++..|.+.+++.|+....+            
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  260 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  260 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            446777888888888777433222211  1223334443333  334666778888888888765543            


Q ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHH
Q 019871          220 -REGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLEN  297 (334)
Q Consensus       220 -nlG~al~~~g~yeeAl~~fekALeldP~~~e~-~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~  297 (334)
                       .+|.++++.|++++|+..|+++++++|+++.. ..+|+++|.+|..+|++++|+..|+++++++|++...... -. ..
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~-~~  338 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD-RA-EA  338 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH-HH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH-HH-HH
Confidence             33899999999999999999999999986310 2378999999999999999999999999999987653222 11 12


Q ss_pred             HhcChHHHHHHHHHHHhhh
Q 019871          298 LRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       298 Lr~dp~F~~lL~~~~e~~~  316 (334)
                      +....+|.+++..|++.+.
T Consensus       339 ~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            3445678888888877763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.87  E-value=1e-08  Score=79.43  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHHHHCCChHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~----~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      +.++..|.+.++..|..... +++|.+++..|+|++|+..|+++++++|++...    ..+|+++|.+|..+|++++|+.
T Consensus        21 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  100 (131)
T 1elr_A           21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH  100 (131)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            44556677777777776554 499999999999999999999999998865221    4689999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 019871          274 ALEDALLAGYE  284 (334)
Q Consensus       274 ~lekAIelgp~  284 (334)
                      +|+++++++|+
T Consensus       101 ~~~~~~~~~~~  111 (131)
T 1elr_A          101 FYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHhCCC
Confidence            99999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.87  E-value=3e-08  Score=93.76  Aligned_cols=131  Identities=16%  Similarity=0.102  Sum_probs=96.9

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchh---cHHHH--HHH------------hhchhhhh--hhHHHHHHHHHHHHHhhccC
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGEL---SEKEI--IRA------------ERNSGVIS--NRVREIQMQNYMKKKEQKER  214 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l---~ek~~--~~a------------~~n~g~~~--~~l~e~q~~~y~~~iel~~~  214 (334)
                      +....|.++..+++...+++.....   .....  ...            ....+...  .+..+.++..|.+.+++.|.
T Consensus        96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  175 (450)
T 2y4t_A           96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW  175 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3456777888888887777632211   11100  011            11112222  22245567788888888887


Q ss_pred             HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          215 REQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       215 ~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .... +.+|.++.+.|++++|+..|+++++.+|++   ..+|+++|.+|..+|++++|+..|+++++++|++..
T Consensus       176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  246 (450)
T 2y4t_A          176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR  246 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence            7665 499999999999999999999999999998   689999999999999999999999999999998765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.87  E-value=2e-08  Score=97.04  Aligned_cols=156  Identities=12%  Similarity=0.060  Sum_probs=108.6

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGK  230 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~  230 (334)
                      ....|.++...++...+++......... ....+...|.+....  .+.+...|.+.++..|.....+ .+|.++...|+
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence            4556677777777777766322111110 012233344333222  3566788888888888876654 99999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR  310 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~  310 (334)
                      |++|+..|+++++++|++   ..+|+++|.+|..+|++++|+..|+++++.+|.+......- . ..+....++.++++.
T Consensus       326 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-~-~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF-A-EILTDRGDFDTAIKQ  400 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH-H-HHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-H-HHHHHhCCHHHHHHH
Confidence            999999999999999998   47999999999999999999999999999999876522111 1 122334566666666


Q ss_pred             HHHhh
Q 019871          311 FDESF  315 (334)
Q Consensus       311 ~~e~~  315 (334)
                      |++.+
T Consensus       401 ~~~a~  405 (537)
T 3fp2_A          401 YDIAK  405 (537)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.86  E-value=2.4e-08  Score=81.11  Aligned_cols=94  Identities=13%  Similarity=0.137  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      ..+.+|..++..|+|++|+..|+++++++|++   ..+|+++|.+|..+|++++|+.+|+++++++|.+...... -.. 
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~a~-   89 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR-RAA-   89 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH-HHH-
Confidence            45699999999999999999999999999998   6899999999999999999999999999999987653221 111 


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 019871          297 NLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .+....+|.++++.|++.+
T Consensus        90 ~~~~~~~~~~A~~~~~~a~  108 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVV  108 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHH
Confidence            2333456777777666665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.86  E-value=2.4e-08  Score=87.98  Aligned_cols=89  Identities=10%  Similarity=0.071  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH---------
Q 019871          198 REIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK---------  264 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~---------  264 (334)
                      .+.++..|.+.++..|..    ...+++|.+++++|+|++|+..|+++++.+|+++....++|++|.+|..         
T Consensus        20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~   99 (225)
T 2yhc_A           20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGF   99 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhh
Confidence            355667777777777764    3456999999999999999999999999999986545689999999986         


Q ss_pred             ---------CCChHHHHHHHHHHHHcCCCCH
Q 019871          265 ---------LNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       265 ---------lG~~eeAl~~lekAIelgp~~~  286 (334)
                               +|++++|+..|+++|+..|+..
T Consensus       100 ~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A          100 FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             --------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             hccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence                     6799999999999999999865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.86  E-value=1.1e-08  Score=94.17  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL  295 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl  295 (334)
                      ...+.+|..+++.|+|++|+..|+++++++|++   +.+|+++|.+|..+|++++|+.+|++|++++|++...... -..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~   80 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-LGQ   80 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHH
Confidence            445699999999999999999999999999998   6899999999999999999999999999999998763322 122


Q ss_pred             HHHhcChHHHHHHHHHHHhhh
Q 019871          296 ENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                       .+....+|.+++..|++.+.
T Consensus        81 -~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           81 -CQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             -HHHHTTCHHHHHHHHHHHHH
T ss_pred             -HHHHcCCHHHHHHHHHHHHH
Confidence             23445678888888877664

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.86  E-value=1.4e-08  Score=101.58  Aligned_cols=130  Identities=10%  Similarity=0.014  Sum_probs=103.8

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQDL-REGLQLYR  227 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~  227 (334)
                      +....|.++...+++.++++...   ++.... ..++.+.|.++..  ..+.++..|.++++++|+....+ ++|.++.+
T Consensus        25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  103 (568)
T 2vsy_A           25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED  103 (568)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            44567888888888888887432   222111 2344555555433  34667889999999999876654 99999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC---CChHHHHHHHHHHHHcCCCCHH
Q 019871          228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL---NQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l---G~~eeAl~~lekAIelgp~~~~  287 (334)
                      +|++++|++.|+++++++|++   ..+++++|.+|..+   |++++|++.|+++++.+|.+..
T Consensus       104 ~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          104 AGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence            999999999999999999998   68999999999999   9999999999999999998643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.85  E-value=2.5e-08  Score=91.56  Aligned_cols=88  Identities=13%  Similarity=0.030  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      ..+.++..|.+.+++.|.....+ .+|.++++.|++++|+..|+++++++|++   ..+|+++|.+|..+|++++|+..|
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~  155 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFTNESLQRQACEIL  155 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34667788889999999876654 99999999999999999999999999998   689999999999999999999999


Q ss_pred             HHHHHcCCCCHH
Q 019871          276 EDALLAGYEDFK  287 (334)
Q Consensus       276 ekAIelgp~~~~  287 (334)
                      +++++++|.+..
T Consensus       156 ~~~~~~~~~~~~  167 (368)
T 1fch_A          156 RDWLRYTPAYAH  167 (368)
T ss_dssp             HHHHHTSTTTGG
T ss_pred             HHHHHhCcCcHH
Confidence            999999998654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.85  E-value=2e-08  Score=84.96  Aligned_cols=76  Identities=16%  Similarity=0.055  Sum_probs=37.7

Q ss_pred             HHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          203 QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       203 ~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      ..+.+.++++|++... +++|.++.+.|++++|+..|+++++++|++.+ ..+++++|.+|..+|+.++|+.+|+++|
T Consensus        95 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A           95 KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            4444445555544332 25555555555555555555555555554321 2345555555555555555555555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.83  E-value=3.9e-09  Score=97.24  Aligned_cols=126  Identities=8%  Similarity=-0.036  Sum_probs=90.8

Q ss_pred             hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871          157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY  231 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y  231 (334)
                      ..|..++..++..++++........+  ...++.+.+.+....  .+.+...+.+.+++.|+..... ..+..+.+.+++
T Consensus       122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~  201 (287)
T 3qou_A          122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD  201 (287)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence            45566667667777666322111111  123344455444333  3556667777777778654443 777778888999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ++|+..|+++++.+|++   ..+++++|.+|...|++++|+..|+++++.+|++
T Consensus       202 ~~a~~~l~~al~~~P~~---~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          202 TPEIQQLQQQVAENPED---AALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             CHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             CccHHHHHHHHhcCCcc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            99999999999999998   6899999999999999999999999999999985

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=3.2e-08  Score=83.68  Aligned_cols=125  Identities=10%  Similarity=0.025  Sum_probs=89.4

Q ss_pred             hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHH-HHHcCC
Q 019871          157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQ-LYRTGK  230 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~a-l~~~g~  230 (334)
                      ..|.+++..+++.+++.......+.+  ...++.+.|.+....  .+.++..+.+.+++.| +.... .++.. +.+.++
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~   89 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAA   89 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcc
Confidence            45667777778888777433222222  134455666555433  3556677777777888 54443 33433 334445


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ..+|+..|+++++++|++   ..+++++|.+|..+|++++|+..|+++++.+|..
T Consensus        90 ~~~a~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           90 ESPELKRLEQELAANPDN---FELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             SCHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             cchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            567899999999999998   6899999999999999999999999999999874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.81  E-value=2.5e-08  Score=77.25  Aligned_cols=95  Identities=16%  Similarity=0.205  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC-------HHHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED-------FKRV  289 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~-------~~~i  289 (334)
                      ..+.+|..++..|+|++|+..|+++++.+|++   ..+++++|.+|..+|++++|+.+|+++++++|.+       ... 
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-   81 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA-   81 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH-
Confidence            35689999999999999999999999999998   6899999999999999999999999999998764       221 


Q ss_pred             hcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          290 RTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ...-.. .+....+|..+++.|++.+.
T Consensus        82 ~~~la~-~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           82 YARIGN-SYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHhccHHHHHHHHHHHHH
Confidence            111111 12344567777777776663

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.80  E-value=4.1e-08  Score=93.85  Aligned_cols=176  Identities=9%  Similarity=0.002  Sum_probs=102.3

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh---------------------hHHHHHHHHHHHHHhhc
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN---------------------RVREIQMQNYMKKKEQK  212 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~---------------------~l~e~q~~~y~~~iel~  212 (334)
                      ...|.++...++...+++......+..  ...++.+.|.++.                     ...+.++..|.++++++
T Consensus       251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  330 (472)
T 4g1t_A          251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN  330 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence            457788888888888776432111110  0122333333221                     11344556777788888


Q ss_pred             cCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HHHCCChHHHHHHHHHHHHcCCCCHHHHh
Q 019871          213 ERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLNQVKAGLSALEDALLAGYEDFKRVR  290 (334)
Q Consensus       213 ~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a-y~~lG~~eeAl~~lekAIelgp~~~~~i~  290 (334)
                      |..... +++|.++...|+|++|+.+|+++|+++|++......++++|.. +..+|++++|+.+|++||+++|.+..+..
T Consensus       331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~  410 (472)
T 4g1t_A          331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK  410 (472)
T ss_dssp             TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence            876554 4999999999999999999999999998864333456777754 56789999999999999999998765321


Q ss_pred             cChhhHH-----HhcCh----HHHHHHHHHHHhhhchhHHHHHHHhhccc
Q 019871          291 TDPDLEN-----LRASE----EFDVLLKRFDESFINENAINAIKSLFGLL  331 (334)
Q Consensus       291 ~Dpdl~~-----Lr~dp----~F~~lL~~~~e~~~~~~ai~~~k~~~~~~  331 (334)
                      .-..+..     +..+|    -+..+-..|...-..++||+.+++....|
T Consensus       411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            1111111     11111    23333344555566777777777665543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.78  E-value=3.7e-08  Score=85.96  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=93.7

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcH---------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhc--------c
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE---------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQK--------E  213 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~e---------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~--------~  213 (334)
                      +...+|.++..++++..+++... .+..         ......+.+.|.+....  .+.++..|.+++++.        |
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  124 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP  124 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            45678889999998888887432 1111         11124455555555433  456667777777762        3


Q ss_pred             CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          214 RREQD-LREGLQLYRTGKYEVAREKFESVLGS--------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       214 ~~~~~-~nlG~al~~~g~yeeAl~~fekALel--------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      ..... .++|.+++..|+|++|+..|++++++        +|..   ..+++++|.+|..+|++++|+..|++++++.
T Consensus       125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV---AKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            33333 49999999999999999999999998        5554   6899999999999999999999999999873

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.78  E-value=3.7e-08  Score=91.06  Aligned_cols=172  Identities=11%  Similarity=-0.014  Sum_probs=114.9

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcHH-------HHHHHhhchhhhhhh-HHHHHHHHHHHHHhhccCH-------HH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSEK-------EIIRAERNSGVISNR-VREIQMQNYMKKKEQKERR-------EQ  217 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~ek-------~~~~a~~n~g~~~~~-l~e~q~~~y~~~iel~~~~-------~~  217 (334)
                      +....|.++..++++..+++... .+...       .....+.+.|.++.. ..+.++..|.+++++.+..       ..
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~  157 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAEL  157 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            45678889999999999987432 22110       112344555554433 2356778899988876542       22


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTD  292 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~D  292 (334)
                      ..++|.++.++|+|++|+..|++++++.|++..   ...+++++|.||..+|++++|+.+|++++ ++|....  ....-
T Consensus       158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l  236 (307)
T 2ifu_A          158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAAL  236 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHH
Confidence            349999999999999999999999998776532   13488999999999999999999999999 9986432  10000


Q ss_pred             hhhH-HH--hcChHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871          293 PDLE-NL--RASEEFDVLLKRFDESFINENAINAIKSL  327 (334)
Q Consensus       293 pdl~-~L--r~dp~F~~lL~~~~e~~~~~~ai~~~k~~  327 (334)
                      ..+. .+  .....|.. +..|+.....+.++..+-.-
T Consensus       237 ~~l~~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~  273 (307)
T 2ifu_A          237 EDLLQAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAIS  273 (307)
T ss_dssp             HHHHHHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHh
Confidence            0010 11  12245677 44477766677777655533

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.77  E-value=1.1e-07  Score=93.52  Aligned_cols=112  Identities=6%  Similarity=-0.032  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.+...|.+.+++.|.+... ..+|..+.+.|++++|++.|+++++.+|++   ..+|+++|.+|...|++++|++.|++
T Consensus       390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~  466 (597)
T 2xpi_A          390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQS  466 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44556666666677765544 377778888888888888888888777776   46778888888888888888888888


Q ss_pred             HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +++++|.+......-  ...+....+++++++.|++.+
T Consensus       467 ~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~  502 (597)
T 2xpi_A          467 SYALFQYDPLLLNEL--GVVAFNKSDMQTAINHFQNAL  502 (597)
T ss_dssp             HHHHCCCCHHHHHHH--HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHH
Confidence            888777765422111  112233456666666666654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.77  E-value=1.1e-08  Score=98.78  Aligned_cols=126  Identities=10%  Similarity=0.015  Sum_probs=94.4

Q ss_pred             hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCH
Q 019871          157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKY  231 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~y  231 (334)
                      ..|.++...++...+++......+..  ....+.+.|.+...  ..+.++..|.+.+++.|..... +.+|.+++..|++
T Consensus       281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  360 (537)
T 3fp2_A          281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF  360 (537)
T ss_dssp             HHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            45556666666666665322111110  01234444444433  3466778888999999886554 5999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ++|+..|+++++.+|++   +.+|+++|.+|..+|++++|+..|+++++++|.+
T Consensus       361 ~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          361 TESEAFFNETKLKFPTL---PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            99999999999999998   5799999999999999999999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.76  E-value=1.1e-07  Score=72.69  Aligned_cols=94  Identities=17%  Similarity=0.271  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      ..+.+|..++..|++++|+..|+++++.+|++   ..+++++|.+|...|++++|+..|+++++.+|.+...... -. .
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la-~   85 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN-LG-N   85 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH-H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH-HH-H
Confidence            34589999999999999999999999999987   6799999999999999999999999999999987652211 11 1


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 019871          297 NLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .+....+|.+++..|++.+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHH
Confidence            2333456777777776665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.76  E-value=1.9e-07  Score=89.28  Aligned_cols=87  Identities=17%  Similarity=0.045  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          196 RVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      +..+.++..|.+.++..|+....+++|.++++.|+|++|+..|+++++++|++   ..+|+.+|.+|..+|++++|+..|
T Consensus        20 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~   96 (514)
T 2gw1_A           20 KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY---SKVLLRRASANEGLGKFADAMFDL   96 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH---HHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33456778888888888876666799999999999999999999999999998   679999999999999999999999


Q ss_pred             HHHHHcCCCC
Q 019871          276 EDALLAGYED  285 (334)
Q Consensus       276 ekAIelgp~~  285 (334)
                      +++++.+|.+
T Consensus        97 ~~~~~~~~~~  106 (514)
T 2gw1_A           97 SVLSLNGDFN  106 (514)
T ss_dssp             HHHHHSSSCC
T ss_pred             HHHHhcCCCc
Confidence            9999998843

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.74  E-value=9.4e-08  Score=93.97  Aligned_cols=159  Identities=12%  Similarity=0.015  Sum_probs=117.6

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRT  228 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~  228 (334)
                      +...++.++.+.++..++++......+..  ....+.+.+...  .+..+.+...|.+.+++.|.+...+ .+|..+.+.
T Consensus       409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            55678899999999999887433222110  012233344333  3334667788888888888876655 999999999


Q ss_pred             CCHHHHHHHHHHHHhc------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcCh
Q 019871          229 GKYEVAREKFESVLGS------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASE  302 (334)
Q Consensus       229 g~yeeAl~~fekALel------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp  302 (334)
                      |++++|++.|++++++      +|++  ...+|+++|.+|.+.|++++|++.|+++++++|++......-  ...+....
T Consensus       489 g~~~~A~~~~~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g  564 (597)
T 2xpi_A          489 SDMQTAINHFQNALLLVKKTQSNEKP--WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI--ALVYLHKK  564 (597)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCSGG--GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhhhccccchhh--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH--HHHHHHhC
Confidence            9999999999999998      4442  157999999999999999999999999999999877632221  12345567


Q ss_pred             HHHHHHHHHHHhhh
Q 019871          303 EFDVLLKRFDESFI  316 (334)
Q Consensus       303 ~F~~lL~~~~e~~~  316 (334)
                      +++++++.|++.+.
T Consensus       565 ~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          565 IPGLAITHLHESLA  578 (597)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            89999999988873

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.72  E-value=1.1e-07  Score=89.56  Aligned_cols=128  Identities=13%  Similarity=0.100  Sum_probs=95.1

Q ss_pred             HHHHhhhhHHHHhhcccchhhhhc-hhcH-------H-HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH------
Q 019871          153 TIRQRVGPLLMKMQKRYGKMEQTG-ELSE-------K-EIIRAERNSGVISNRV--REIQMQNYMKKKEQKERR------  215 (334)
Q Consensus       153 ai~~R~G~V~lkLek~~~aie~~~-~l~e-------k-~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~------  215 (334)
                      .+...+|.++..++++..+++... ++..       . .....+.+.|.+...+  .+.++..|.+++++.+..      
T Consensus       144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (383)
T 3ulq_A          144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM  223 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            355788999999999888887422 2211       1 1123455556555433  466777888888764432      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          216 -EQDLREGLQLYRTGKYEVAREKFESVLGS-----K-PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       216 -~~~~nlG~al~~~g~yeeAl~~fekALel-----d-P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                       ....++|.++..+|+|++|+.+|++++++     + |..   +.+++++|.+|..+|++++|+.++++|+++.+
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL---PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             13459999999999999999999999994     5 554   68999999999999999999999999999843

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.72  E-value=1.4e-07  Score=84.48  Aligned_cols=87  Identities=15%  Similarity=0.065  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.+...+.+.++..|.....+ .+|.+++..|++++|+..|+++++++|++   ..+|+++|.+|..+|++++|+..|+
T Consensus        37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~  113 (327)
T 3cv0_A           37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLR  113 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3445667777788888776554 99999999999999999999999999998   6899999999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 019871          277 DALLAGYEDFK  287 (334)
Q Consensus       277 kAIelgp~~~~  287 (334)
                      ++++.+|.+..
T Consensus       114 ~~~~~~~~~~~  124 (327)
T 3cv0_A          114 AWLLSQPQYEQ  124 (327)
T ss_dssp             HHHHTSTTTTT
T ss_pred             HHHHhCCccHH
Confidence            99999998654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.71  E-value=1.7e-07  Score=83.61  Aligned_cols=76  Identities=18%  Similarity=0.125  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHH
Q 019871          201 QMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGL  272 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl  272 (334)
                      ++..|.++++.. .....+++|.++..    .+++++|+..|+++++.++     ..+++++|.+|..    .+++++|+
T Consensus        97 A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~~~~~~~~~~A~  170 (273)
T 1ouv_A           97 ALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-----GDGCTILGSLYDAGRGTPKDLKKAL  170 (273)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            334444444432 22333355555555    5555555555555555432     2355555555555    55555555


Q ss_pred             HHHHHHHHcC
Q 019871          273 SALEDALLAG  282 (334)
Q Consensus       273 ~~lekAIelg  282 (334)
                      .+|++|++.+
T Consensus       171 ~~~~~a~~~~  180 (273)
T 1ouv_A          171 ASYDKACDLK  180 (273)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHCC
Confidence            5555555553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.70  E-value=2e-07  Score=88.66  Aligned_cols=139  Identities=11%  Similarity=-0.034  Sum_probs=106.8

Q ss_pred             HHhhchhhhhhh----HHHHHHHHHHHHHhhccCHHHHH-HHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCCcch
Q 019871          185 RAERNSGVISNR----VREIQMQNYMKKKEQKERREQDL-REGLQL----YRT---GKYEVAREKFESVLGSKPTPEESS  252 (334)
Q Consensus       185 ~a~~n~g~~~~~----l~e~q~~~y~~~iel~~~~~~~~-nlG~al----~~~---g~yeeAl~~fekALeldP~~~e~~  252 (334)
                      .+|...+.+...    ..+.++..+...+..+|+....+ +++.++    ...   +++++++..++++++.+|.+   .
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---y  144 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---H  144 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---H
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---H
Confidence            356666665543    33667788888999999987765 888888    777   89999999999999999998   7


Q ss_pred             HHHHHHHHHHHHCCChH--HHHHHHHHHHHcCCCCHH-HHhcChhhHHHhcChH------HHHHHHHHHHhh----hchh
Q 019871          253 VASYNVACCYSKLNQVK--AGLSALEDALLAGYEDFK-RVRTDPDLENLRASEE------FDVLLKRFDESF----INEN  319 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~e--eAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~------F~~lL~~~~e~~----~~~~  319 (334)
                      .+|++++.++..+|.++  ++++.++++|+.+|.|+. |..+-  +. +...++      +++.|+.+++.+    .|+.
T Consensus       145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~--~l-l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S  221 (306)
T 3dra_A          145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF--FL-LFSKKHLATDNTIDEELNYVKDKIVKCPQNPS  221 (306)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH--HH-HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHH--HH-HHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence            89999999999999998  999999999999999887 33221  11 223333      777777776666    5667


Q ss_pred             HHHHHHHhhc
Q 019871          320 AINAIKSLFG  329 (334)
Q Consensus       320 ai~~~k~~~~  329 (334)
                      |-+....++.
T Consensus       222 aW~y~~~ll~  231 (306)
T 3dra_A          222 TWNYLLGIHE  231 (306)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7776666665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.68  E-value=1.6e-07  Score=83.40  Aligned_cols=127  Identities=15%  Similarity=0.133  Sum_probs=90.9

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcH---------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhc--------c
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE---------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQK--------E  213 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~e---------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~--------~  213 (334)
                      +...+|.++..++++..+++... .+..         ......+.+.|.+....  .+.+...+.+.+++.        +
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  150 (311)
T 3nf1_A           71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP  150 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            44567888888888888877422 1111         11123344455444333  355667777777663        2


Q ss_pred             CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          214 RREQ-DLREGLQLYRTGKYEVAREKFESVLGS--------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       214 ~~~~-~~nlG~al~~~g~yeeAl~~fekALel--------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      .... ..++|.+++..|++++|+..|++++++        +|..   ..+++++|.+|..+|++++|+..|++++++.+
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV---AKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            2223 349999999999999999999999998        4444   67899999999999999999999999998643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.68  E-value=8.3e-08  Score=92.58  Aligned_cols=95  Identities=17%  Similarity=0.263  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLG----------------SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALe----------------ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      ...++|..+++.|+|++|+..|++|++                ++|.+   ..+|+|+|.||.++|++++|+.+|++||+
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA---LSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            356999999999999999999999999                67766   68999999999999999999999999999


Q ss_pred             cCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          281 AGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       281 lgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ++|++...+.. -.. .+....+|+++++.|++.+.
T Consensus       302 ~~p~~~~a~~~-lg~-~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          302 IDPSNTKALYR-RAQ-GWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             TCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHH-HHH-HHHHccCHHHHHHHHHHHHH
Confidence            99998763322 121 23445678899988888773

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.67  E-value=1.8e-07  Score=83.41  Aligned_cols=79  Identities=13%  Similarity=0.102  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHH
Q 019871          199 EIQMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKA  270 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~ee  270 (334)
                      +.++..|.+++++. .....+++|.++..    .+++++|+..|+++++.++     +.+++++|.+|..    .+++++
T Consensus       131 ~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~g~~~~~~~~~  204 (273)
T 1ouv_A          131 KKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD-----SPGCFNAGNMYHHGEGATKNFKE  204 (273)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTCSSCCCHHH
T ss_pred             HHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCccHHH
Confidence            34445555555443 23334466666665    6666666666666665532     3456666666666    666666


Q ss_pred             HHHHHHHHHHcCC
Q 019871          271 GLSALEDALLAGY  283 (334)
Q Consensus       271 Al~~lekAIelgp  283 (334)
                      |+.+|++|++.++
T Consensus       205 A~~~~~~a~~~~~  217 (273)
T 1ouv_A          205 ALARYSKACELEN  217 (273)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCC
Confidence            6666666666654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.67  E-value=1e-07  Score=91.13  Aligned_cols=157  Identities=10%  Similarity=0.000  Sum_probs=90.2

Q ss_pred             HhhhhHHHHhhcccchhhhhchh---cHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcC
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGEL---SEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRTG  229 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l---~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g  229 (334)
                      ...|.++..+++...+++.....   .... ...+.+.+.+..  +..+.++..+.+.++..|..... +++|.++++.|
T Consensus       308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  386 (514)
T 2gw1_A          308 YHRGQMNFILQNYDQAGKDFDKAKELDPEN-IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN  386 (514)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Confidence            34566666666666665532211   1100 112222332222  22344556666777776665444 47788888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHHHH---CCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChH
Q 019871          230 KYEVAREKFESVLGSKPTPEES---SVASYNVACCYSK---LNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEE  303 (334)
Q Consensus       230 ~yeeAl~~fekALeldP~~~e~---~~a~yNlA~ay~~---lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~  303 (334)
                      ++++|+..|+++++++|+++..   ..+|+++|.+|..   +|++++|+..|+++++++|++......- . ..+....+
T Consensus       387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-a-~~~~~~g~  464 (514)
T 2gw1_A          387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL-A-QMKLQQED  464 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH-H-HHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH-H-HHHHHhcC
Confidence            8888888888888777776310   1277888888888   7888888888888888877765422111 1 11233345


Q ss_pred             HHHHHHHHHHhh
Q 019871          304 FDVLLKRFDESF  315 (334)
Q Consensus       304 F~~lL~~~~e~~  315 (334)
                      +.++++.|++.+
T Consensus       465 ~~~A~~~~~~a~  476 (514)
T 2gw1_A          465 IDEAITLFEESA  476 (514)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666655554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.67  E-value=1.4e-08  Score=80.36  Aligned_cols=85  Identities=8%  Similarity=0.007  Sum_probs=64.6

Q ss_pred             HcCCHHHHHHHHHHHHhc---CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChH
Q 019871          227 RTGKYEVAREKFESVLGS---KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEE  303 (334)
Q Consensus       227 ~~g~yeeAl~~fekALel---dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~  303 (334)
                      .+|+|++|+..|++++++   +|++   ..+|+++|.+|..+|++++|+.+|++|++++|++...... -.. .+....+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~-~~~~~g~   76 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF-YAM-VLYNLGR   76 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHHTC
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH-HHH-HHHHcCC
Confidence            479999999999999999   4665   7899999999999999999999999999999998663222 222 2334467


Q ss_pred             HHHHHHHHHHhhh
Q 019871          304 FDVLLKRFDESFI  316 (334)
Q Consensus       304 F~~lL~~~~e~~~  316 (334)
                      |.++++.|++.+.
T Consensus        77 ~~~A~~~~~~al~   89 (117)
T 3k9i_A           77 YEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887777663

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.67  E-value=2e-07  Score=85.81  Aligned_cols=86  Identities=9%  Similarity=0.020  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHh-hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          199 EIQMQNYMKKKE-QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       199 e~q~~~y~~~ie-l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      +.+...|.++++ +.|+.... +++|..+.+.|++++|+..|+++++++|+++  ..+|+++|.++..+|++++|+..|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            344555666665 45555433 3666666666666666666666666666552  1256666666666666666666666


Q ss_pred             HHHHcCCCCH
Q 019871          277 DALLAGYEDF  286 (334)
Q Consensus       277 kAIelgp~~~  286 (334)
                      +|++.+|...
T Consensus       159 ~a~~~~p~~~  168 (308)
T 2ond_A          159 KAREDARTRH  168 (308)
T ss_dssp             HHHTSTTCCT
T ss_pred             HHHhcCCCCH
Confidence            6666655543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.66  E-value=1.5e-07  Score=86.54  Aligned_cols=125  Identities=13%  Similarity=0.050  Sum_probs=91.3

Q ss_pred             HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGK  230 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~  230 (334)
                      ...|.+++..++..++++.........  ........+....  +..+.++..|.++++++|++.+. +++|.++.+.|+
T Consensus       155 ~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~  234 (287)
T 3qou_A          155 LLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR  234 (287)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc
Confidence            346778888888888876433222111  0011111121111  11233567889999999998666 599999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      +++|+..|+++++.+|++.+ ..++.+++.+|..+|+.++|+..|+++|..
T Consensus       235 ~~~A~~~l~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          235 NEEALELLFGHLRXDLTAAD-GQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHHHHCTTGGG-GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccc-chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            99999999999999999743 579999999999999999999999999863

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.65  E-value=3.8e-08  Score=85.67  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=69.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHcCCCCHHHHhc-Ch
Q 019871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV----------KAGLSALEDALLAGYEDFKRVRT-DP  293 (334)
Q Consensus       225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~----------eeAl~~lekAIelgp~~~~~i~~-Dp  293 (334)
                      .-+.++|++|++.|+++++++|++   +.+|+|+|.++..++++          ++|+..|++||+++|++...+.. .-
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~---aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            346788999999999999999999   68999999999999875          59999999999999998762221 11


Q ss_pred             hhHHHh--------cChHHHHHHHHHHHhh
Q 019871          294 DLENLR--------ASEEFDVLLKRFDESF  315 (334)
Q Consensus       294 dl~~Lr--------~dp~F~~lL~~~~e~~  315 (334)
                      .+..+-        ...+|+++++.|++.+
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl  118 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAV  118 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence            111110        0147899999998888

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.63  E-value=2.3e-07  Score=87.25  Aligned_cols=157  Identities=9%  Similarity=-0.028  Sum_probs=105.6

Q ss_pred             hhhHHHHhhcccchhhhhc-hhc--H----HH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH-------H-HHH
Q 019871          158 VGPLLMKMQKRYGKMEQTG-ELS--E----KE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERR-------E-QDL  219 (334)
Q Consensus       158 ~G~V~lkLek~~~aie~~~-~l~--e----k~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~-------~-~~~  219 (334)
                      .|.++...+++..+++... .+.  +    .. ....+.+.|.+...+  .+.++..+.+++++.++.       . ...
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            7778888888888877322 211  1    11 124455556555433  466777888888764432       2 234


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----C-CCCHHHHh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLA-----G-YEDFKRVR  290 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----g-p~~~~~i~  290 (334)
                      ++|.++..+|+|++|+..|++|+++.|...+   .+.+++|+|.+|..+|++++|+.+|++|+++     + |.. ..+.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~  267 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAY  267 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHH
Confidence            9999999999999999999999988765421   2358999999999999999999999999995     3 332 2222


Q ss_pred             cChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          291 TDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ..-... .....++.++++.|++.+.
T Consensus       268 ~~l~~~-~~~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          268 FLITQI-HYKLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             HHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence            222211 2334567777777766653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.63  E-value=4e-08  Score=93.10  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--------------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE--------------SSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e--------------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      ..+++|..+++.|+|++|+.+|++|++++|++..              ...+|+|+|.||.++|++++|+.+|++||+++
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3569999999999999999999999999998620              00389999999999999999999999999999


Q ss_pred             CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      |.+...+.. ... .+....+|.+++..|++.+.
T Consensus       261 p~~~~a~~~-lg~-a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          261 EKNPKALFR-RGK-AKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             TTCHHHHHH-HHH-HHHTTTCHHHHHHHHHHTTC
T ss_pred             CCCHHHHHH-HHH-HHHHcCCHHHHHHHHHHHHH
Confidence            998763322 122 24455788888888888773

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.62  E-value=1.2e-07  Score=75.05  Aligned_cols=74  Identities=12%  Similarity=0.042  Sum_probs=64.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ...+++.+|..+++.|+|..|+..|++|++..+..    ......++++|.||.++|++++|+..+++|+++.|++..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            45678999999999999999999999999864221    123678999999999999999999999999999999754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.61  E-value=4e-07  Score=83.78  Aligned_cols=113  Identities=12%  Similarity=-0.037  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHH-------HcCCH-------HHHHHHHHHHHh-cCCCCCcchHHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLY-------RTGKY-------EVAREKFESVLG-SKPTPEESSVASYNVACCY  262 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~-------~~g~y-------eeAl~~fekALe-ldP~~~e~~~a~yNlA~ay  262 (334)
                      +.++..|.++++..|.....+ ++|..+.       +.|++       ++|+..|++|++ ++|++   ..+|+++|.++
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---HHHHHHHHHHH
Confidence            456678999999999987765 8887776       46886       999999999999 79998   67999999999


Q ss_pred             HHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          263 SKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       263 ~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ..+|++++|+..|++||++.|.+...+...-. ..++...++.++++.|++.+
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM-KFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHH-HHHHHHHCHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHhccccCccHHHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999987641111111 11233345666666666655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.60  E-value=1.5e-08  Score=77.45  Aligned_cols=80  Identities=14%  Similarity=0.204  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+.++..|.+++++.|+....+ ++|.+++++|+|++|+..|+++++++|++..   ...+++++|.++..+|++++|+.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence            4567788889999999876654 9999999999999999999999999999721   13689999999999998888877


Q ss_pred             HHHH
Q 019871          274 ALED  277 (334)
Q Consensus       274 ~lek  277 (334)
                      .+++
T Consensus       100 ~~~~  103 (111)
T 2l6j_A          100 EVDE  103 (111)
T ss_dssp             SSSS
T ss_pred             HHHH
Confidence            6654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.60  E-value=3e-07  Score=81.70  Aligned_cols=128  Identities=8%  Similarity=-0.063  Sum_probs=91.0

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcH----------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhc--------c
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSE----------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQK--------E  213 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~e----------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~--------~  213 (334)
                      +....|.++...+++..+++......+          ......+.+.|.+....  .+.++..|.+++++.        +
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            445788888888888888774321111          11123344455444332  355667777777652        2


Q ss_pred             CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          214 RREQ-DLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       214 ~~~~-~~nlG~al~~~g~yeeAl~~fekALeld-----P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      .... ..++|.++...|+|++|+..|++++++.     ++++....+++++|.+|..+|++++|+.+|++++++
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2222 3499999999999999999999999884     333333678999999999999999999999999998

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.60  E-value=1.3e-07  Score=87.33  Aligned_cols=160  Identities=9%  Similarity=-0.026  Sum_probs=106.8

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcHH-----HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccC------HHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEK-----EIIRAERNSGVISNRV--REIQMQNYMKKKEQKER------REQ  217 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~ek-----~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~------~~~  217 (334)
                      ...+.|.++...+++..+++...   ++..+     .....+.+.|.+...+  .+.++..|.+++++.+.      ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34677888998888888887422   22111     1123455556555433  35567788888877542      122


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-----H
Q 019871          218 -DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-----R  288 (334)
Q Consensus       218 -~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-----~  288 (334)
                       ..++|.++.. |+|++|+.+|++|+++.|....   ...+++++|.+|..+|++++|+.+|++|+++.+.+..     .
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence             3499999988 9999999999999999876421   1468999999999999999999999999998654321     1


Q ss_pred             HhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          289 VRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       289 i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +...-.+. .....++.+++..|++.+
T Consensus       197 ~~~~~g~~-~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLV-QLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHH-HHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHH-HHHcCCHHHHHHHHHHHh
Confidence            11111111 122346777777776655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.59  E-value=1.3e-07  Score=96.58  Aligned_cols=100  Identities=11%  Similarity=0.053  Sum_probs=88.5

Q ss_pred             HHhhchhhhhhhHH----HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 019871          185 RAERNSGVISNRVR----EIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNV  258 (334)
Q Consensus       185 ~a~~n~g~~~~~l~----e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNl  258 (334)
                      .+|...+.+...+.    +.++..+.+.++++|....+| ++|.++.+.| .++++++.++++|+.+|.+   ..+|+++
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n---~saW~~r  184 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---YSSWHYR  184 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---HHHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC---ccHHHHH
Confidence            46777777776654    667889999999999987766 9999999999 9999999999999999999   6899999


Q ss_pred             HHHHHHC--------------CChHHHHHHHHHHHHcCCCCHH
Q 019871          259 ACCYSKL--------------NQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       259 A~ay~~l--------------G~~eeAl~~lekAIelgp~~~~  287 (334)
                      +.++..+              +.+++|++++++||+++|++..
T Consensus       185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s  227 (567)
T 1dce_A          185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS  227 (567)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred             HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence            9999986              5689999999999999998766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.58  E-value=6.6e-07  Score=84.25  Aligned_cols=128  Identities=12%  Similarity=0.046  Sum_probs=95.3

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcH------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhcc---CH----
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSE------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQKE---RR----  215 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~e------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~---~~----  215 (334)
                      +...+|.++..+++...+++...   ++.+      ......+.+.|.+...+  .+.++..|.+++++.+   ..    
T Consensus       143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  222 (378)
T 3q15_A          143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA  222 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            55678999999999888887422   1111      11223455556555443  3566777888777533   11    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALe-----ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ....++|.++..+|+|++|+..|+++++     .+|..   ..+++++|.+|.++|++++|+.++++|+++.+.
T Consensus       223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL---PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            1234999999999999999999999999     67765   689999999999999999999999999998543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.56  E-value=9.3e-07  Score=77.50  Aligned_cols=169  Identities=7%  Similarity=-0.103  Sum_probs=109.8

Q ss_pred             HHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhh-----HHHHHHHHHHHHHhhccCHHHHHHHHHHHHH--
Q 019871          155 RQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNR-----VREIQMQNYMKKKEQKERREQDLREGLQLYR--  227 (334)
Q Consensus       155 ~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~-----l~e~q~~~y~~~iel~~~~~~~~nlG~al~~--  227 (334)
                      ...+|.++...++...+++......+.....+..+.|.++..     -.+.++..|.++++. -.....+++|..+..  
T Consensus        21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~   99 (212)
T 3rjv_A           21 QYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA-GSKSGEIVLARVLVNRQ   99 (212)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCC
Confidence            456788888877777777642211111112345555555433     134455666666543 233445699999988  


Q ss_pred             --cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhc-
Q 019871          228 --TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRA-  300 (334)
Q Consensus       228 --~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~-  300 (334)
                        .+++++|+..|+++++..|.+. .+.+++++|.+|..    .+++++|+.+|++|+++ +.+.. +...-...-... 
T Consensus       100 g~~~d~~~A~~~~~~A~~~~~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~-a~~~Lg~~y~~g~  176 (212)
T 3rjv_A          100 AGATDVAHAITLLQDAARDSESDA-AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY-AEYWAGMMFQQGE  176 (212)
T ss_dssp             GSSCCHHHHHHHHHHHTSSTTSHH-HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH-HHHHHHHHHHHCB
T ss_pred             CCccCHHHHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH-HHHHHHHHHHcCC
Confidence              9999999999999999998310 14799999999999    88999999999999999 22222 111112111221 


Q ss_pred             ----ChHHHHHHHHHHHhh--hchhHHHHHHHh
Q 019871          301 ----SEEFDVLLKRFDESF--INENAINAIKSL  327 (334)
Q Consensus       301 ----dp~F~~lL~~~~e~~--~~~~ai~~~k~~  327 (334)
                          .+.+.+++.-|++..  -+..|...+..+
T Consensus       177 gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l  209 (212)
T 3rjv_A          177 KGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI  209 (212)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence                236888888888876  346666666654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.55  E-value=4.6e-07  Score=86.53  Aligned_cols=82  Identities=9%  Similarity=-0.049  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH--HhcChhhHHHhcChHHHHHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR--VRTDPDLENLRASEEFDVLL  308 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~--i~~Dpdl~~Lr~dp~F~~lL  308 (334)
                      +++|+..|+++++++|.+   ..+++++|.+|..+|++++|+.+|++||++++.+...  +...-.-........+.+++
T Consensus       316 ~~~A~~~~~~a~~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai  392 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI  392 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHHHhhcCCch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            344444444444444444   2356677777788888888888888888888764432  11000000122345677777


Q ss_pred             HHHHHhh
Q 019871          309 KRFDESF  315 (334)
Q Consensus       309 ~~~~e~~  315 (334)
                      +.|.+.+
T Consensus       393 ~~y~kal  399 (472)
T 4g1t_A          393 HHFIEGV  399 (472)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777766

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.53  E-value=3.9e-07  Score=79.32  Aligned_cols=128  Identities=13%  Similarity=0.093  Sum_probs=92.0

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcH---------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhh--------cc
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE---------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQ--------KE  213 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~e---------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel--------~~  213 (334)
                      +...+|.++..++++..+++... .+..         .....++.+.|.+....  .+.+...+.+.+++        .|
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  166 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP  166 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            45678888888888888887432 1211         11123455555554433  45566777777776        44


Q ss_pred             CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------------------------
Q 019871          214 RREQD-LREGLQLYRTGKYEVAREKFESVLGSKPT---------------------------------------------  247 (334)
Q Consensus       214 ~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~---------------------------------------------  247 (334)
                      ..... .++|.+++.+|++++|+..|++++++.|.                                             
T Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (283)
T 3edt_B          167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence            43333 49999999999999999999999986221                                             


Q ss_pred             -CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          248 -PEESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       248 -~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                       ++....+++++|.+|..+|++++|+..|++|+++
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             1223578999999999999999999999999986

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.52  E-value=3.3e-06  Score=81.27  Aligned_cols=141  Identities=9%  Similarity=-0.003  Sum_probs=105.4

Q ss_pred             HhhchhhhhhhHH------------HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCc
Q 019871          186 AERNSGVISNRVR------------EIQMQNYMKKKEQKERREQDL-REGLQLYRTGK--YEVAREKFESVLGSKPTPEE  250 (334)
Q Consensus       186 a~~n~g~~~~~l~------------e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~--yeeAl~~fekALeldP~~~e  250 (334)
                      +|...+.+...+.            +.++..+...+..+|+....+ +++.++...++  |++++.+++++++++|.|  
T Consensus        66 aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN--  143 (331)
T 3dss_A           66 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN--  143 (331)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC--
Confidence            4555655554432            345677778888999987776 99999999994  999999999999999999  


Q ss_pred             chHHHHHHHHHHHHCCC-hHHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhc-----------ChHHHHHHHHHHHhh--
Q 019871          251 SSVASYNVACCYSKLNQ-VKAGLSALEDALLAGYEDFK-RVRTDPDLENLRA-----------SEEFDVLLKRFDESF--  315 (334)
Q Consensus       251 ~~~a~yNlA~ay~~lG~-~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~-----------dp~F~~lL~~~~e~~--  315 (334)
                       ..+|++++.++..+|. +++++++++++|+.+|.|.. |...---+..+..           ...+++.|+.+++.+  
T Consensus       144 -y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          144 -FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             -HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence             6899999999999999 59999999999999999887 4333323333311           145677777777666  


Q ss_pred             --hchhHHHHHHHhhc
Q 019871          316 --INENAINAIKSLFG  329 (334)
Q Consensus       316 --~~~~ai~~~k~~~~  329 (334)
                        .++.|-.-.+.+++
T Consensus       223 ~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          223 DPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             STTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence              45555555555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.51  E-value=1.7e-08  Score=100.43  Aligned_cols=127  Identities=13%  Similarity=0.110  Sum_probs=89.9

Q ss_pred             hhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871          157 RVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY  231 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y  231 (334)
                      ..|.++.+.+++.++++... .+.... ....+.+.|.++..+  .+.++..|.+++++.|+....+ ++|.+++++|+|
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            34555556666666665322 111110 123344555554433  4677889999999999876665 999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHH--HHHCCChHHHHHHHH-----------HHHHcCCCCH
Q 019871          232 EVAREKFESVLGSKPTPEESSVASYNVACC--YSKLNQVKAGLSALE-----------DALLAGYEDF  286 (334)
Q Consensus       232 eeAl~~fekALeldP~~~e~~~a~yNlA~a--y~~lG~~eeAl~~le-----------kAIelgp~~~  286 (334)
                      ++|++.|+++++++|++   ..++++++.+  +..+|++++|++.++           ++++++|.+.
T Consensus        91 ~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           91 RAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHHHHHHHHHHSTTC---TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            99999999999999998   4689999999  889999999999999           8888888743

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.46  E-value=8.3e-07  Score=86.17  Aligned_cols=164  Identities=14%  Similarity=-0.029  Sum_probs=118.0

Q ss_pred             HHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH---HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc-C-CHHHH
Q 019871          163 MKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV---REIQMQNYMKKKEQKERREQDL-REGLQLYRT-G-KYEVA  234 (334)
Q Consensus       163 lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l---~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~-g-~yeeA  234 (334)
                      .+.+...++++......+..  ...+|...+.+...+   .+.++..+...++.+|+...++ +++.++... + +++++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence            34455555665322111111  124566666666444   3566788888999999988776 999999888 8 99999


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChH--------HHHHHHHHHHHcCCCCHH-HHhcChhhHHHhc---C-
Q 019871          235 REKFESVLGSKPTPEESSVASYNVACCYSKLNQVK--------AGLSALEDALLAGYEDFK-RVRTDPDLENLRA---S-  301 (334)
Q Consensus       235 l~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~e--------eAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~---d-  301 (334)
                      ++.++++|+++|.+   ..+|++++-++..+|.++        +++++++++|+.+|.|.. |..+---+..+..   . 
T Consensus       145 L~~~~k~L~~dpkN---y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~  221 (349)
T 3q7a_A          145 IEYIHGSLLPDPKN---YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS  221 (349)
T ss_dssp             HHHHHHHTSSCTTC---HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred             HHHHHHHHHhCCCC---HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence            99999999999999   689999999999999988        999999999999999887 4333222211211   0 


Q ss_pred             hHHHHHHHHHHHhh----hchhHHHHHHHhhc
Q 019871          302 EEFDVLLKRFDESF----INENAINAIKSLFG  329 (334)
Q Consensus       302 p~F~~lL~~~~e~~----~~~~ai~~~k~~~~  329 (334)
                      ..+++.|+.+++.+    .|+.|-...+.++.
T Consensus       222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~  253 (349)
T 3q7a_A          222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLK  253 (349)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            12677777776666    67778877777776

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.45  E-value=1.6e-07  Score=71.13  Aligned_cols=77  Identities=13%  Similarity=0.140  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhhccCHHH-H-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQ-D-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL  275 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~-~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l  275 (334)
                      .+.++..|.+.+++.|.... . +++|.+++.+|+|++|+..|+++++++|++   ..++++        +.+.+++..|
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~--------~~~~~a~~~~   84 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS---PALQAR--------KMVMDILNFY   84 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---THHHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHH--------HHHHHHHHHH
Confidence            35567788888899998765 4 599999999999999999999999999998   456655        6788999999


Q ss_pred             HHHHHcCCCC
Q 019871          276 EDALLAGYED  285 (334)
Q Consensus       276 ekAIelgp~~  285 (334)
                      ++++..+|++
T Consensus        85 ~~~~~~~p~~   94 (99)
T 2kc7_A           85 NKDMYNQLEH   94 (99)
T ss_dssp             CCTTHHHHCC
T ss_pred             HHHhccCccc
Confidence            9998887764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.43  E-value=9.6e-07  Score=82.53  Aligned_cols=131  Identities=16%  Similarity=0.074  Sum_probs=88.7

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhcH------HH-HHHHhhchhhhhhhHHH-------------------HHHHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE------KE-IIRAERNSGVISNRVRE-------------------IQMQNYM  206 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~e------k~-~~~a~~n~g~~~~~l~e-------------------~q~~~y~  206 (334)
                      +...+|.++..++++..+++... .+..      .. ....+.+.|.++.....                   .++..|.
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            44567888888888888877432 1111      11 12344555555543333                   3445555


Q ss_pred             HHHhhccC------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          207 KKKEQKER------R-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       207 ~~iel~~~------~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      +.+++.+.      . ....++|.+++..|+|++|+..|++++++.|....   ...+++++|.+|..+|++++|+.+|+
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            55543211      1 12349999999999999999999999998776421   12489999999999999999999999


Q ss_pred             HHHHcCCC
Q 019871          277 DALLAGYE  284 (334)
Q Consensus       277 kAIelgp~  284 (334)
                      +|+++.+.
T Consensus       288 ~al~~~~~  295 (411)
T 4a1s_A          288 RTLALAVE  295 (411)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.42  E-value=2.4e-06  Score=67.63  Aligned_cols=62  Identities=16%  Similarity=0.126  Sum_probs=30.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ++|.+++..|+|++|+..|++++++.+...   ....+++++|.+|..+|++++|+.++++|+++
T Consensus        94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            555555555555555555555554422110   11234555555555555555555555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.42  E-value=1.8e-06  Score=82.01  Aligned_cols=85  Identities=6%  Similarity=-0.202  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhhccCHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH----HHC---CChH
Q 019871          200 IQMQNYMKKKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCY----SKL---NQVK  269 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g--~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay----~~l---G~~e  269 (334)
                      .++..+.+.++++|....++ .+|.++..++  +++++++.++++|..+|++   ..+|++++.++    ..+   ++++
T Consensus        51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~---y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN---YQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---HHHHHHHHHHHHHHHHhccccCCHH
Confidence            35677888999999998876 9999999999  9999999999999999999   58999999999    888   8999


Q ss_pred             HHHHHHHHHHHcCCCCHH
Q 019871          270 AGLSALEDALLAGYEDFK  287 (334)
Q Consensus       270 eAl~~lekAIelgp~~~~  287 (334)
                      +++..++++|+.+|.++.
T Consensus       128 ~EL~~~~~~l~~~pkny~  145 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHH  145 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhCCCCHH
Confidence            999999999999999887

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.42  E-value=1.1e-06  Score=82.66  Aligned_cols=158  Identities=9%  Similarity=-0.004  Sum_probs=104.5

Q ss_pred             hhhhHHHHhhcccchhhhhc---hhcH----H-HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccC----H---H-HH
Q 019871          157 RVGPLLMKMQKRYGKMEQTG---ELSE----K-EIIRAERNSGVISNRV--REIQMQNYMKKKEQKER----R---E-QD  218 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~---~l~e----k-~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~----~---~-~~  218 (334)
                      ..|..+...+++..+++...   .+..    . .....+.+.|.+...+  .+.++..+.+++++.+.    .   . ..
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            46777777778888776322   1211    1 1123455556555433  45667778888876543    1   1 12


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHH-----cCCCCHHHHh
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALL-----AGYEDFKRVR  290 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe-----lgp~~~~~i~  290 (334)
                      .++|.++..+|+|++|+..|++|+++.+...   ....+++|+|.+|..+|++++|+.+|++|++     .+|.. ..+.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~  264 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVL  264 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHH
Confidence            4999999999999999999999998754321   1257899999999999999999999999999     55553 2222


Q ss_pred             cChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          291 TDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ..-... .....++++++..+++.+.
T Consensus       265 ~~la~~-~~~~g~~~~A~~~~~~al~  289 (378)
T 3q15_A          265 FGLSWT-LCKAGQTQKAFQFIEEGLD  289 (378)
T ss_dssp             HHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence            222211 2334567777777766653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.41  E-value=8.4e-07  Score=83.77  Aligned_cols=134  Identities=10%  Similarity=0.065  Sum_probs=89.0

Q ss_pred             hhhHHHHhhcccchhhhhchhc---HHHHHHHhhchhhhhhhHH--HHHHHHHHHHHhhccC---HHHHHHHHHHHHHcC
Q 019871          158 VGPLLMKMQKRYGKMEQTGELS---EKEIIRAERNSGVISNRVR--EIQMQNYMKKKEQKER---REQDLREGLQLYRTG  229 (334)
Q Consensus       158 ~G~V~lkLek~~~aie~~~~l~---ek~~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~---~~~~~nlG~al~~~g  229 (334)
                      .+.++..++++.++.+....+.   +.. . ..+..+.+....+  ..++..+.......++   +...+++|.++.++|
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG  185 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA  185 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence            4556677778888776433222   221 1 2333443332221  2222222222211111   234579999999999


Q ss_pred             CHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcChhhH
Q 019871          230 KYEVAREKFESVLGSK--PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTDPDLE  296 (334)
Q Consensus       230 ~yeeAl~~fekALeld--P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpdl~  296 (334)
                      ++++|+.+|++++...  |..  ...+++++|.|+..+|+.++|...|++++..+|+ ..  ..+.||.+-
T Consensus       186 ~~~eAl~~l~~a~~g~~~P~~--~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~  253 (282)
T 4f3v_A          186 LFTEAERRLTEANDSPAGEAC--ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYR  253 (282)
T ss_dssp             CHHHHHHHHHHHHTSTTTTTT--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCC
T ss_pred             CHHHHHHHHHHHhcCCCCccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCC
Confidence            9999999999999654  552  2579999999999999999999999999999998 55  667777764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.40  E-value=7.6e-07  Score=69.51  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHH
Q 019871          232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRF  311 (334)
Q Consensus       232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~  311 (334)
                      ++|+..|+++++.+|++   +.+|+++|.+|..+|++++|+.+|++|++++|.+...... -.. .+....++.+++..|
T Consensus         2 ~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~-~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-LGK-TLQGQGDRAGARQAW   76 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHH-HHH-HHHHcCCHHHHHHHH
Confidence            46899999999999998   6899999999999999999999999999999997763221 111 123345677777777


Q ss_pred             HHhh
Q 019871          312 DESF  315 (334)
Q Consensus       312 ~e~~  315 (334)
                      ++.+
T Consensus        77 ~~al   80 (115)
T 2kat_A           77 ESGL   80 (115)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.39  E-value=1e-06  Score=80.34  Aligned_cols=85  Identities=16%  Similarity=0.062  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhhccCH------H-HHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCCcc-hHHHHHHHHHHHHCC
Q 019871          198 REIQMQNYMKKKEQKERR------E-QDLREGLQLYRTGKYEVAREKFESVL---GSKPTPEES-SVASYNVACCYSKLN  266 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~------~-~~~nlG~al~~~g~yeeAl~~fekAL---eldP~~~e~-~~a~yNlA~ay~~lG  266 (334)
                      .+.++..|.+++++.+..      . ...++|.+++..|+|++|+..|++|+   +..|++... ..+++|+|.+|..+|
T Consensus       131 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~  210 (293)
T 2qfc_A          131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS  210 (293)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence            344555666666543221      1 22377777777777777777777777   334443110 146777777777777


Q ss_pred             ChHHHHHHHHHHHHcC
Q 019871          267 QVKAGLSALEDALLAG  282 (334)
Q Consensus       267 ~~eeAl~~lekAIelg  282 (334)
                      ++++|+.++++|+++.
T Consensus       211 ~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          211 RYEESLYQVNKAIEIS  226 (293)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            7777777777777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.38  E-value=1.8e-06  Score=63.37  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC
Q 019871          198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG  266 (334)
                      .+.++..|.+++++.|..... +++|.++++.|++++|+..|+++++++|++   ..+++++|.++..+|
T Consensus        25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcC
Confidence            345667788888888876555 599999999999999999999999999998   689999999998765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.38  E-value=1.6e-06  Score=68.00  Aligned_cols=69  Identities=13%  Similarity=-0.039  Sum_probs=61.9

Q ss_pred             cCHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          213 ERREQ-DLREGLQLYRTGK---YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       213 ~~~~~-~~nlG~al~~~g~---yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      |++.+ ...+|.+++..++   .++|...+++|+++||++   ..+++.+|..+...|++++|+..++++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            44444 4599999987666   799999999999999999   789999999999999999999999999999998

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.37  E-value=5.6e-07  Score=82.11  Aligned_cols=95  Identities=14%  Similarity=0.020  Sum_probs=71.2

Q ss_pred             hhhhhhh--HHHHHHHHHHHHHhhccCH------H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC-CcchHHHH
Q 019871          190 SGVISNR--VREIQMQNYMKKKEQKERR------E-QDLREGLQLYRTGKYEVAREKFESVLGSKP---TP-EESSVASY  256 (334)
Q Consensus       190 ~g~~~~~--l~e~q~~~y~~~iel~~~~------~-~~~nlG~al~~~g~yeeAl~~fekALeldP---~~-~e~~~a~y  256 (334)
                      .|.+...  ..+.++..|.+++++.+..      . ...++|.+++.+|+|++|+.+|+++++.-.   .+ .....+++
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            4444433  2366778888888754331      1 235999999999999999999999995321   11 12256899


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          257 NVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       257 NlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      |+|.+|..+|++++|+.++++||++.+.
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.37  E-value=4.2e-06  Score=77.09  Aligned_cols=131  Identities=15%  Similarity=0.072  Sum_probs=89.3

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcHHH-----HHHHhhchhhhhhhHH----------------------HHHHH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKE-----IIRAERNSGVISNRVR----------------------EIQMQ  203 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~-----~~~a~~n~g~~~~~l~----------------------e~q~~  203 (334)
                      +....|.++..++++..+++...   ++.++.     ....+.+.|.+.....                      +.++.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            44567888888888888876422   121111     1123445554443333                      23344


Q ss_pred             HHHHHHhhc------cCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHH
Q 019871          204 NYMKKKEQK------ERRE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       204 ~y~~~iel~------~~~~-~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .|.+++++.      +... ...++|.+++..|+|++|+..|++++++.|+...   ...+++++|.+|..+|++++|+.
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            555555431      1112 2349999999999999999999999998776531   13489999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 019871          274 ALEDALLAGYE  284 (334)
Q Consensus       274 ~lekAIelgp~  284 (334)
                      +|++|+++.+.
T Consensus       249 ~~~~al~~~~~  259 (406)
T 3sf4_A          249 YYKKTLLLARQ  259 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.36  E-value=1.1e-05  Score=73.37  Aligned_cols=97  Identities=15%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHH---HcCCCCHH---HH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDAL---LAGYEDFK---RV  289 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAI---elgp~~~~---~i  289 (334)
                      +.+|..+...|+|++|+..|++++++.+....   ...+++++|.+|..+|++++|+.+|++|+   +..+.+..   .+
T Consensus       119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~  198 (293)
T 2qfc_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV  198 (293)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence            47888899999999999999999987665421   14589999999999999999999999999   44555432   23


Q ss_pred             hcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          290 RTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ..+-... +....+|.++++.|++.+.
T Consensus       199 ~~nlg~~-y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          199 RYNHAKA-LYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHH-HHHHhhHHHHHHHHHHHHH
Confidence            3333322 3445678888888777763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.35  E-value=3.9e-06  Score=77.31  Aligned_cols=131  Identities=15%  Similarity=0.080  Sum_probs=92.6

Q ss_pred             HHHhhhhHHHHhhc--------------------ccchhhhhc-hhc--H----HH-HHHHhhchhhhhhhH--HHHHHH
Q 019871          154 IRQRVGPLLMKMQK--------------------RYGKMEQTG-ELS--E----KE-IIRAERNSGVISNRV--REIQMQ  203 (334)
Q Consensus       154 i~~R~G~V~lkLek--------------------~~~aie~~~-~l~--e----k~-~~~a~~n~g~~~~~l--~e~q~~  203 (334)
                      +...+|.++..+++                    +..+++... .+.  +    .. ....+.+.|.+....  .+.++.
T Consensus       129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (406)
T 3sf4_A          129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI  208 (406)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            55678888888888                    666666322 111  1    11 123344555555433  355667


Q ss_pred             HHHHHHhhccCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHH
Q 019871          204 NYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       204 ~y~~~iel~~~~-------~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      .+.+++++.+..       ....++|.+++..|++++|+..|++++++.|+...   ...+++++|.+|..+|++++|+.
T Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  288 (406)
T 3sf4_A          209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  288 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            777777664432       12349999999999999999999999988776421   14689999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 019871          274 ALEDALLAGYE  284 (334)
Q Consensus       274 ~lekAIelgp~  284 (334)
                      +|++|+++.+.
T Consensus       289 ~~~~a~~~~~~  299 (406)
T 3sf4_A          289 YHLKHLAIAQE  299 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.34  E-value=4.7e-06  Score=80.25  Aligned_cols=100  Identities=11%  Similarity=0.046  Sum_probs=86.3

Q ss_pred             HHhhchhhhhhhH----HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 019871          185 RAERNSGVISNRV----REIQMQNYMKKKEQKERREQDL-REGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNV  258 (334)
Q Consensus       185 ~a~~n~g~~~~~l----~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~-yeeAl~~fekALeldP~~~e~~~a~yNl  258 (334)
                      .+|...+.+...+    .+.++..+.+.++++|.+..++ +++.++...|+ +++++++++++|+.+|.|   ..+|+++
T Consensus       109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N---~SAW~~R  185 (331)
T 3dss_A          109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---YSSWHYR  185 (331)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC---HHHHHHH
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC---HHHHHHH
Confidence            3566666666544    2456778999999999987766 99999999999 699999999999999999   6899999


Q ss_pred             HHHHHHC--------------CChHHHHHHHHHHHHcCCCCHH
Q 019871          259 ACCYSKL--------------NQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       259 A~ay~~l--------------G~~eeAl~~lekAIelgp~~~~  287 (334)
                      +.++..+              +.++++++++++||..+|+|..
T Consensus       186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S  228 (331)
T 3dss_A          186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS  228 (331)
T ss_dssp             HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence            9999988              5689999999999999999887

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.34  E-value=2.3e-06  Score=74.95  Aligned_cols=97  Identities=13%  Similarity=0.075  Sum_probs=77.0

Q ss_pred             Hhhchhhhhhh------HHHHHHHHHHHHHhhccC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcch
Q 019871          186 AERNSGVISNR------VREIQMQNYMKKKEQKER---REQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESS  252 (334)
Q Consensus       186 a~~n~g~~~~~------l~e~q~~~y~~~iel~~~---~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~  252 (334)
                      +..+.|.++..      -.+.++.-|.++++..+.   ....+++|..+..    .+++++|+..|++++++ |.+   +
T Consensus        87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~---~  162 (212)
T 3rjv_A           87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT---G  162 (212)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT---T
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC---H
Confidence            44455554432      345667788888887774   4556799999999    99999999999999998 555   4


Q ss_pred             HHHHHHHHHHHHC-C-----ChHHHHHHHHHHHHcCCCCH
Q 019871          253 VASYNVACCYSKL-N-----QVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       253 ~a~yNlA~ay~~l-G-----~~eeAl~~lekAIelgp~~~  286 (334)
                      .+++++|.+|... |     ++++|+.+|++|++.|....
T Consensus       163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A  202 (212)
T 3rjv_A          163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG  202 (212)
T ss_dssp             HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            6999999999864 3     89999999999999987643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.33  E-value=4e-06  Score=66.34  Aligned_cols=65  Identities=15%  Similarity=0.189  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      ..++|.+++..|+|++|+..|++++++.+....   ...+++++|.+|..+|++++|+..+++|+++.
T Consensus        52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            458999999999999999999999988655321   24689999999999999999999999999874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.32  E-value=3e-06  Score=71.00  Aligned_cols=128  Identities=11%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhc------HHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhh---cc-CH----
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELS------EKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQ---KE-RR----  215 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~------ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel---~~-~~----  215 (334)
                      +....|.++...+++..+++... .+.      ... ....+.+.|.+....  .+.+...+.+++++   .+ ..    
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  107 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS  107 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            44556667777666666665322 111      011 112233333333222  23344455555544   22 11    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLA  281 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIel  281 (334)
                      ....++|.++...|++++|+..|++++++.+....   ...++.++|.+|..+|++++|+.++++|+++
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            11236666666666666666666666654322210   1234566666666666666666666666665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.27  E-value=2.2e-06  Score=78.03  Aligned_cols=96  Identities=14%  Similarity=0.074  Sum_probs=71.9

Q ss_pred             HhhchhhhhhhH--HHHHHHHHHHHHhhc----cCH---H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cch
Q 019871          186 AERNSGVISNRV--REIQMQNYMKKKEQK----ERR---E-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESS  252 (334)
Q Consensus       186 a~~n~g~~~~~l--~e~q~~~y~~~iel~----~~~---~-~~~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~  252 (334)
                      .+.+.|.++..+  .+.+...|.++++..    ...   . ..+++|.+++++|+|++|+..|++++++.++..   ..+
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            345556555433  355667777777421    111   1 235999999999999999999999998876542   125


Q ss_pred             HHHHHHHHHHHHCCC-hHHHHHHHHHHHHc
Q 019871          253 VASYNVACCYSKLNQ-VKAGLSALEDALLA  281 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~-~eeAl~~lekAIel  281 (334)
                      .+|+++|.||..+|+ +++|+.+|++|+++
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            799999999999995 69999999999987

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.25  E-value=3.2e-06  Score=73.06  Aligned_cols=83  Identities=11%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             HHHHHHHhhcc-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          203 QNYMKKKEQKE-RREQDLREGLQLYRTG---KYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       203 ~~y~~~iel~~-~~~~~~nlG~al~~~g---~yeeAl~~fekALeld-P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      ..|.+.++..+ .....|+.|.++.+.+   ++++++..+++.++.+ |+.  ....+|++|.+|.++|++++|++++++
T Consensus        19 ~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--~rd~lY~LAv~~~kl~~Y~~A~~y~~~   96 (152)
T 1pc2_A           19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRLKEYEKALKYVRG   96 (152)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--hHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            45666555444 4456689999999988   7889999999999998 732  157999999999999999999999999


Q ss_pred             HHHcCCCCHH
Q 019871          278 ALLAGYEDFK  287 (334)
Q Consensus       278 AIelgp~~~~  287 (334)
                      +|++.|++..
T Consensus        97 lL~ieP~n~Q  106 (152)
T 1pc2_A           97 LLQTEPQNNQ  106 (152)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHhcCCCCHH
Confidence            9999999765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.23  E-value=6e-06  Score=73.05  Aligned_cols=63  Identities=16%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      ++|.++...|++++|+..|++++++.|+...   ...+++++|.+|..+|++++|+.++++|+++.
T Consensus       228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  293 (338)
T 3ro2_A          228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  293 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555443210   12455555555555555555555555555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.23  E-value=9.4e-06  Score=75.76  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhhccCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCCcchHHHHHHHHHHHHCC
Q 019871          198 REIQMQNYMKKKEQKERRE-----QDLREGLQLYRTGKYEVAREKFESVLGS------KPTPEESSVASYNVACCYSKLN  266 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~-----~~~nlG~al~~~g~yeeAl~~fekALel------dP~~~e~~~a~yNlA~ay~~lG  266 (334)
                      .+.++..|.+++++.|++.     ..+.+|.+++..|+|++|+..|++++++      +|..   ..+++++|.+|..+|
T Consensus        64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE---AKSSGNLGNTLKVMG  140 (411)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH---HHHHHHHHHHHHHCC
Confidence            3456667777777777754     2459999999999999999999999988      4443   689999999999999


Q ss_pred             ChHHHHHHHHHHHHcC
Q 019871          267 QVKAGLSALEDALLAG  282 (334)
Q Consensus       267 ~~eeAl~~lekAIelg  282 (334)
                      ++++|+.+|++|+++.
T Consensus       141 ~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          141 RFDEAAICCERHLTLA  156 (411)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999999983

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.20  E-value=2.9e-05  Score=64.93  Aligned_cols=85  Identities=15%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhhc------cCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCC-cchHHHHHHHHHHHHCC
Q 019871          198 REIQMQNYMKKKEQK------ERREQ-DLREGLQLYRTGKYEVAREKFESVLGS---KPTPE-ESSVASYNVACCYSKLN  266 (334)
Q Consensus       198 ~e~q~~~y~~~iel~------~~~~~-~~nlG~al~~~g~yeeAl~~fekALel---dP~~~-e~~~a~yNlA~ay~~lG  266 (334)
                      .+.++..|.+++++.      +.... ..++|.++...|+|++|+..|++++++   .++++ ....+++++|.+|..+|
T Consensus        42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g  121 (203)
T 3gw4_A           42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG  121 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC
Confidence            344556666666532      21222 349999999999999999999999988   44221 12578999999999999


Q ss_pred             ChHHHHHHHHHHHHcC
Q 019871          267 QVKAGLSALEDALLAG  282 (334)
Q Consensus       267 ~~eeAl~~lekAIelg  282 (334)
                      ++++|+.++++|+++.
T Consensus       122 ~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          122 DLAGARQEYEKSLVYA  137 (203)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999999873

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.20  E-value=2.6e-05  Score=75.59  Aligned_cols=85  Identities=5%  Similarity=-0.091  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-C-ChHHHHHHH
Q 019871          200 IQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-N-QVKAGLSAL  275 (334)
Q Consensus       200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l-G-~~eeAl~~l  275 (334)
                      .++..+.+.++++|.....+ .+|.++..+| .+++++..++++|..+|++   ..+|++|+.++..+ + +++++++.+
T Consensus        72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---y~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---YQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            46678889999999988876 9999999999 5999999999999999999   78999999999998 8 999999999


Q ss_pred             HHHHHcCCCCHH
Q 019871          276 EDALLAGYEDFK  287 (334)
Q Consensus       276 ekAIelgp~~~~  287 (334)
                      +++|+.+|.++.
T Consensus       149 ~k~L~~dpkNy~  160 (349)
T 3q7a_A          149 HGSLLPDPKNYH  160 (349)
T ss_dssp             HHHTSSCTTCHH
T ss_pred             HHHHHhCCCCHH
Confidence            999999999887

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.17  E-value=1.3e-05  Score=70.92  Aligned_cols=87  Identities=14%  Similarity=0.027  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhhccCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHHCCChH
Q 019871          198 REIQMQNYMKKKEQKERREQ-----DLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVACCYSKLNQVK  269 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~-----~~nlG~al~~~g~yeeAl~~fekALeldP~---~~e~~~a~yNlA~ay~~lG~~e  269 (334)
                      .+.++..|.+.+++.|.+..     ...+|.+++..|+|++|+..|++++++.+.   .+....+++++|.+|..+|+++
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  100 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD  100 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence            34456677777777777532     349999999999999999999999987321   1112578999999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 019871          270 AGLSALEDALLAGYE  284 (334)
Q Consensus       270 eAl~~lekAIelgp~  284 (334)
                      +|+..+++|+++.+.
T Consensus       101 ~A~~~~~~al~~~~~  115 (338)
T 3ro2_A          101 EAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.15  E-value=2.5e-06  Score=80.58  Aligned_cols=114  Identities=6%  Similarity=-0.087  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      +...+...+...|.+...|.+|.++++.++|++|+..|++++...+.. ....++|++|+++..+|++++|+.+|++++.
T Consensus       121 A~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~-~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          121 AMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF-LAGAAGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            333343333345655666899999999999999999999888763221 0135899999999999999999999999996


Q ss_pred             cC--CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          281 AG--YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       281 lg--p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      -.  |.....+.-...+ .|+..+++.++...|++.+.
T Consensus       200 g~~~P~~~~da~~~~gl-aL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          200 SPAGEACARAIAWYLAM-ARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             STTTTTTHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence            54  4423222222232 36667788888888888774

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.13  E-value=1.3e-05  Score=78.25  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             Hhhchhhhhhh-----HHHHHHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 019871          186 AERNSGVISNR-----VREIQMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASY  256 (334)
Q Consensus       186 a~~n~g~~~~~-----l~e~q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~y  256 (334)
                      ++.+.|.++..     ..+.++..|.++++. ......+++|..++.    .+++++|+.+|++|++..  +   +.+++
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~  403 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L---SAAQV  403 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHH
Confidence            34445544432     335566777777765 334556799999999    899999999999999864  3   57999


Q ss_pred             HHHHHHHH----CCChHHHHHHHHHHHHcCCC
Q 019871          257 NVACCYSK----LNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       257 NlA~ay~~----lG~~eeAl~~lekAIelgp~  284 (334)
                      ++|.+|..    .+++++|+.+|++|++.+|+
T Consensus       404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            99999998    89999999999999999954

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.13  E-value=2.8e-05  Score=76.72  Aligned_cols=83  Identities=12%  Similarity=-0.031  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYR-------TGKYE-------VAREKFESVLG-SKPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~-------~g~ye-------eAl~~fekALe-ldP~~~e~~~a~yNlA~ay~~  264 (334)
                      .+..|.++++..|.....+ ++|..+.+       .|+++       +|+..|++|++ ++|++   ..+|+++|..+..
T Consensus       257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~  333 (530)
T 2ooe_A          257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHh
Confidence            3467888888888776665 77777765       78877       88999999997 78887   6788888988888


Q ss_pred             CCChHHHHHHHHHHHHcCCCCH
Q 019871          265 LNQVKAGLSALEDALLAGYEDF  286 (334)
Q Consensus       265 lG~~eeAl~~lekAIelgp~~~  286 (334)
                      .|++++|...|++|+++.|.+.
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~  355 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDP  355 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCH
T ss_pred             cCCHHHHHHHHHHHhCccccCc
Confidence            8999999999999999888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.06  E-value=4.1e-05  Score=85.78  Aligned_cols=121  Identities=11%  Similarity=0.011  Sum_probs=85.9

Q ss_pred             chhhHHHHHHH-------hhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcc---CH
Q 019871          146 EYGRTMYTIRQ-------RVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKE---RR  215 (334)
Q Consensus       146 ~~~~v~sai~~-------R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l~e~q~~~y~~~iel~~---~~  215 (334)
                      |.++++..|..       .+|.++..++.+.+|++.+.......     .+....     -.++.++.++++..+   .+
T Consensus      1036 D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~-----~A~~VL-----ie~i~nldrAiE~Aervn~p 1105 (1630)
T 1xi4_A         1036 DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT-----SAVQVL-----IEHIGNLDRAYEFAERCNEP 1105 (1630)
T ss_pred             ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCCHH-----HHHHHH-----HHHHhhHHHHHHHHHhcCCH
Confidence            45566665553       57888888888888887433211110     001111     124456666655442   24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ..++++|.++...|+|++|+++|.+|     ++   +.+|+++|.++.++|++++|+++|..|++..++
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DD---PSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc-----CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            55669999999999999999999887     44   568999999999999999999999999988754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.02  E-value=0.00024  Score=69.51  Aligned_cols=64  Identities=8%  Similarity=-0.017  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      -++..+...|++++|+..+++|++++|.    ..+|.-+|.++...|++++|++.|++|+.++|....
T Consensus       282 alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          282 IKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            4566666789999999999999999975    468889999999999999999999999999998543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.02  E-value=6.6e-05  Score=61.74  Aligned_cols=78  Identities=14%  Similarity=0.024  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHH
Q 019871          201 QMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGL  272 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl  272 (334)
                      ++.-|.++++. -.....+++|..++.    .+++++|+..|++|.+.  .+   +.+++++|.+|..    .+++++|+
T Consensus        44 A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~  117 (138)
T 1klx_A           44 LFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--ND---QDGCLILGYKQYAGKGVVKNEKQAV  117 (138)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHCCCCCCcCHHHHH
Confidence            56666666654 334556799999998    89999999999999987  33   5799999999999    89999999


Q ss_pred             HHHHHHHHcCCC
Q 019871          273 SALEDALLAGYE  284 (334)
Q Consensus       273 ~~lekAIelgp~  284 (334)
                      .+|++|.+.+..
T Consensus       118 ~~~~~Aa~~g~~  129 (138)
T 1klx_A          118 KTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCH
Confidence            999999998764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.01  E-value=3.9e-05  Score=77.32  Aligned_cols=90  Identities=10%  Similarity=-0.009  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhhc-----cCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQK-----ERREQ----DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       199 e~q~~~y~~~iel~-----~~~~~----~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~  264 (334)
                      +.+..-|.+++++.     ++...    ..++|.+|..+|+|++|+..|+++|++     -|++++.+..++|+|.+|..
T Consensus       326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~  405 (490)
T 3n71_A          326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH  405 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            44555566666543     22222    239999999999999999999999976     46776667899999999999


Q ss_pred             CCChHHHHHHHHHHHHc-----CCCCHHH
Q 019871          265 LNQVKAGLSALEDALLA-----GYEDFKR  288 (334)
Q Consensus       265 lG~~eeAl~~lekAIel-----gp~~~~~  288 (334)
                      +|++++|+..|++|+++     ||+.+..
T Consensus       406 ~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~  434 (490)
T 3n71_A          406 AGHIEVGHGMICKAYAILLVTHGPSHPIT  434 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            99999999999999874     7776553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.99  E-value=2.8e-05  Score=76.65  Aligned_cols=85  Identities=9%  Similarity=0.010  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHh-hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          200 IQMQNYMKKKE-QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       200 ~q~~~y~~~ie-l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      .+...|.++++ +.|+.... +.+|..+.+.|++++|...|+++++++|.++  ..+|.+.+.++.++|++++|+..|++
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--hHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45667777776 67765554 4788888888888888888888888888762  24788888888778888888888888


Q ss_pred             HHHcCCCCH
Q 019871          278 ALLAGYEDF  286 (334)
Q Consensus       278 AIelgp~~~  286 (334)
                      |++..|...
T Consensus       382 Al~~~~~~~  390 (530)
T 2ooe_A          382 AREDARTRH  390 (530)
T ss_dssp             HHTCTTCCT
T ss_pred             HHhccCCch
Confidence            887766543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.98  E-value=2.8e-05  Score=77.15  Aligned_cols=83  Identities=12%  Similarity=0.014  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhhc-----cCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQK-----ERREQ----DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       199 e~q~~~y~~~iel~-----~~~~~----~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~  264 (334)
                      +.+..-|.+++++.     |+...    ..++|.+|..+|+|++|+..|+++|++     -|++++.+..++|+|.+|..
T Consensus       315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~  394 (433)
T 3qww_A          315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG  394 (433)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence            34555666766643     33322    239999999999999999999999966     46676667899999999999


Q ss_pred             CCChHHHHHHHHHHHHc
Q 019871          265 LNQVKAGLSALEDALLA  281 (334)
Q Consensus       265 lG~~eeAl~~lekAIel  281 (334)
                      +|++++|+..|++|+++
T Consensus       395 qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          395 LENKAAGEKALKKAIAI  411 (433)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHH
Confidence            99999999999999886

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.98  E-value=8.8e-05  Score=72.36  Aligned_cols=60  Identities=15%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHHHHHHcC
Q 019871          218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAG  282 (334)
Q Consensus       218 ~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~lekAIelg  282 (334)
                      .+++|..+..    .+++++|+..|+++++..  +   +.+++++|.+|..    .+++++|+.+|++|++.+
T Consensus       150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  217 (490)
T 2xm6_A          150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--N---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG  217 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence            3456655555    556666666666665542  2   3456666666655    556666666666665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.87  E-value=5.3e-05  Score=58.29  Aligned_cols=68  Identities=10%  Similarity=0.107  Sum_probs=51.9

Q ss_pred             cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          244 SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       244 ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      .+|++   +.+|+++|.+|..+|++++|+.+|++|++++|++...... -. ..+....+|.++++.|++.+.
T Consensus         2 ~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-lg-~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            2 EDPED---PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LG-KLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             ---CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH-HH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HH-HHHHHcCCHHHHHHHHHHHHh
Confidence            46777   6899999999999999999999999999999997763222 11 123455688888888888773

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=97.87  E-value=5.2e-06  Score=66.33  Aligned_cols=50  Identities=28%  Similarity=0.421  Sum_probs=43.8

Q ss_pred             ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +..+|+|.   .|||+++..+.+|.+||..|.+||-|++++.+.+||.|+.|-
T Consensus         5 ~~k~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VN   57 (95)
T 3gge_A            5 IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESIN   57 (95)
T ss_dssp             EEEEEEEECCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEET
T ss_pred             eEEEEEEEECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEEC
Confidence            44677776   599999976667899999999999999999999999999983

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.81  E-value=0.00012  Score=60.14  Aligned_cols=108  Identities=10%  Similarity=-0.035  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~  274 (334)
                      +.++.-|.++++.......   +|..+...+.+++|+..|+++.+.  .+   +.+++++|.+|..    .+++++|+.+
T Consensus        12 ~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           12 KKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL--NS---GNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            4456677777776644333   999999999999999999999997  33   6799999999999    8999999999


Q ss_pred             HHHHHHcCCCCHHHHhcChhhHHHh---cChHHHHHHHHHHHhhhc
Q 019871          275 LEDALLAGYEDFKRVRTDPDLENLR---ASEEFDVLLKRFDESFIN  317 (334)
Q Consensus       275 lekAIelgp~~~~~i~~Dpdl~~Lr---~dp~F~~lL~~~~e~~~~  317 (334)
                      |++|.+.+......   .-...-..   -...+.+++.-|++....
T Consensus        84 ~~~Aa~~g~~~a~~---~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           84 YSKACGLNDQDGCL---ILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHTTCHHHHH---HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHH---HHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99999986532211   11111111   034577777777776643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.76  E-value=9.5e-05  Score=73.04  Aligned_cols=83  Identities=10%  Similarity=-0.144  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhhc-----cCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQK-----ERREQ----DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       199 e~q~~~y~~~iel~-----~~~~~----~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~  264 (334)
                      +.+..-|.+.+++.     ++...    ..++|.++..+|+|++|+..|+++|++     -|+++..+..++|+|.+|..
T Consensus       304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~  383 (429)
T 3qwp_A          304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH  383 (429)
T ss_dssp             HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence            44556677777643     23222    239999999999999999999999966     46666667899999999999


Q ss_pred             CCChHHHHHHHHHHHHc
Q 019871          265 LNQVKAGLSALEDALLA  281 (334)
Q Consensus       265 lG~~eeAl~~lekAIel  281 (334)
                      +|++++|+..|++|+++
T Consensus       384 ~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          384 QGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            99999999999999885

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=97.73  E-value=5.6e-05  Score=60.04  Aligned_cols=48  Identities=23%  Similarity=0.473  Sum_probs=41.2

Q ss_pred             EEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|.|.    .++|+.+....+++++|..|.|+|.|+++|.+++||+|+.+-
T Consensus        14 ~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~IN   65 (97)
T 2ejy_A           14 RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEIN   65 (97)
T ss_dssp             EEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEET
T ss_pred             EEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence            345555    489999976667899999999999999999999999999983

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.69  E-value=0.00056  Score=63.26  Aligned_cols=129  Identities=9%  Similarity=-0.036  Sum_probs=86.1

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcHHH-----HHHHhhchhhhhh--hHHHHHHHHHHHHHhhcc--------CH
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKE-----IIRAERNSGVISN--RVREIQMQNYMKKKEQKE--------RR  215 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~-----~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~--------~~  215 (334)
                      +....|.++...+++..+++...   ++....     ......+.|.+..  +..+.+...|.+.+++.+        ..
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            44556777777777776665322   111110     0111233343332  223455667777766542        12


Q ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          216 EQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       216 ~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~--e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .. ..++|.+++..|++++|+..|++++++.|...  ....+++++|.++...|++++|+..+++++.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            22 24899999999999999999999999988642  124689999999999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.67  E-value=0.00022  Score=69.78  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhhccCHHHH-HHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-H--HHCCChHH
Q 019871          199 EIQMQNYMKKKEQKERREQD-LREGLQLYRT----GKYEVAREKFESVLGSKPTPEESSVASYNVACC-Y--SKLNQVKA  270 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~----g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a-y--~~lG~~ee  270 (334)
                      +.++..|.++++..+..... +++|..+...    +++++|+..|+++.   |.+   +.+++++|.+ |  ...+++++
T Consensus       196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~---~~a~~~Lg~~~~~~~~~~d~~~  269 (452)
T 3e4b_A          196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY---PASWVSLAQLLYDFPELGDVEQ  269 (452)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS---THHHHHHHHHHHHSGGGCCHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC---HHHHHHHHHHHHhCCCCCCHHH
Confidence            44456666666666655554 5777777555    67777777777776   665   4677777777 4  45677777


Q ss_pred             HHHHHHHHHHcCC
Q 019871          271 GLSALEDALLAGY  283 (334)
Q Consensus       271 Al~~lekAIelgp  283 (334)
                      |+.+|++|++.+.
T Consensus       270 A~~~~~~Aa~~g~  282 (452)
T 3e4b_A          270 MMKYLDNGRAADQ  282 (452)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCC
Confidence            7777777777663

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=97.66  E-value=5.4e-05  Score=58.74  Aligned_cols=51  Identities=27%  Similarity=0.516  Sum_probs=43.3

Q ss_pred             cceEEEeecC-----CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~k-----Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.++|+|.|     ++|+.+.... +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus         2 ~~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   58 (95)
T 2vwr_A            2 MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAIN   58 (95)
T ss_dssp             EEEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             cEEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEEC
Confidence            3678899986     3899996553 4589999999999999999999999999983

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.65  E-value=0.00026  Score=65.55  Aligned_cols=131  Identities=8%  Similarity=-0.069  Sum_probs=86.3

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcHH--H--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH--H-----H
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEK--E--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERR--E-----Q  217 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~ek--~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~--~-----~  217 (334)
                      +....|.++...++..++++...   .....  .  ......+.|.+....  .+.+...+.+++++.+..  .     .
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            44455666666666666655321   11110  0  112233444443322  344556677776654431  1     1


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~-----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ..++|.++...|+|++|+..|++++++.+..     +....+++++|.+|..+|++++|+.++++++++.+.
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            3489999999999999999999999876321     112568899999999999999999999999998775

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.65  E-value=0.00039  Score=66.06  Aligned_cols=85  Identities=14%  Similarity=-0.042  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhhccCHHH--H-HHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-CCh
Q 019871          198 REIQMQNYMKKKEQKERREQ--D-LREGLQLYRT-----GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-NQV  268 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~--~-~nlG~al~~~-----g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l-G~~  268 (334)
                      ...+.....++++++|+...  + ..+|..|++.     |+.+.|..+|++||+++|+..  ..+++..|-.|+.. |++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~--id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD--PDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC--SHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHhcCCH
Confidence            44556778899999999433  4 4999999995     999999999999999999741  46889999999884 999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 019871          269 KAGLSALEDALLAGYE  284 (334)
Q Consensus       269 eeAl~~lekAIelgp~  284 (334)
                      ++|...|++|+..+|.
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999999887

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=97.59  E-value=6.6e-05  Score=57.82  Aligned_cols=51  Identities=27%  Similarity=0.565  Sum_probs=42.7

Q ss_pred             cceEEEeecC----CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~k----Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++.++|+|.|    ++|+.+.... +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   58 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVN   58 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            4678888885    4899986543 4599999999999999999999999999984

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=97.56  E-value=7.8e-05  Score=58.15  Aligned_cols=50  Identities=30%  Similarity=0.646  Sum_probs=43.3

Q ss_pred             ceEEEeecC---CcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k---Plgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.|   ++|+.+....+  ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus         5 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vn   59 (97)
T 1n7e_A            5 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN   59 (97)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred             eEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            568899885   78899966543  699999999999999999899999999984

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=97.55  E-value=0.0004  Score=54.67  Aligned_cols=67  Identities=24%  Similarity=0.450  Sum_probs=46.8

Q ss_pred             eEEEeec----CCcceeEeecCCC----ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           86 EYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~~~g----~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..+|.|.    .++|+.+.....|    +++|..|.+++.|++++.+++||+|+.+-   |..+ ...++..+..+++.
T Consensus        10 ~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~In---g~~v-~~~~~~~~~~~l~~   84 (101)
T 2yt7_A           10 CREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAIN---GTSL-VGLPLAACQAAVRE   84 (101)
T ss_dssp             CEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEES---SCBC-TTSCHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEEC-CCCCHHHHHHHHHh
Confidence            3555654    3799999764444    79999999999999977799999999983   3222 01344455555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.55  E-value=0.00028  Score=70.97  Aligned_cols=97  Identities=8%  Similarity=-0.133  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-----GYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----gp~~~~  287 (334)
                      .++.+..+..+|+|++|+..|+++|++     .|+++....+++|+|.+|..+|++++|+..+++||++     ||+.+.
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            345666778899999999999999976     4566555688999999999999999999999999975     676655


Q ss_pred             HHhcChhhHHH-hcChHHHHHHHHHHHh
Q 019871          288 RVRTDPDLENL-RASEEFDVLLKRFDES  314 (334)
Q Consensus       288 ~i~~Dpdl~~L-r~dp~F~~lL~~~~e~  314 (334)
                      .+..--.|..+ ....+|.+++.-|.++
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33222222222 2334555555554443

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=97.50  E-value=0.00017  Score=55.94  Aligned_cols=50  Identities=28%  Similarity=0.611  Sum_probs=42.5

Q ss_pred             ceEEEeecC---CcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ---PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k---Plgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.|   ++|+.+..+.      +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~in   61 (97)
T 2jil_A            3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD   61 (97)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            457788875   7899997654      3589999999999999998899999999983

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=97.44  E-value=0.00016  Score=56.22  Aligned_cols=50  Identities=32%  Similarity=0.499  Sum_probs=42.7

Q ss_pred             ceEEEeec---CCcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +++.|+|.   .++|+.+..+.+   ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus         4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn   59 (98)
T 2opg_A            4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVN   59 (98)
T ss_dssp             EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEEC
Confidence            45677776   568999976655   799999999999999999899999999983

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=97.44  E-value=0.00014  Score=56.84  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             hccceEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..++.++|+|.    ..+|+.+.. .+.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus         5 ~~~~~~~v~l~~~~~~glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~In   60 (96)
T 2qkv_A            5 NSLEKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN   60 (96)
T ss_dssp             CCCCCEEEEEECBTTBCCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEET
T ss_pred             HHCceEEEEEEeCCCCCccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEEC
Confidence            34577888885    368888855 45689999999999999999899999999984

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=97.44  E-value=0.00014  Score=56.12  Aligned_cols=61  Identities=20%  Similarity=0.337  Sum_probs=44.8

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeecccccccccccc--chhhHHHHHHHhhh
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVG  159 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~--~~~~v~sai~~R~G  159 (334)
                      .++|+.+..+.+|+++|..|.++|.|++++.+++||+|+.+-      ..++.  .+..+...++...+
T Consensus        13 ~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~In------g~~v~~~~~~~~~~~l~~~~~   75 (88)
T 1kwa_A           13 EPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREIN------GISVANQTVEQLQKMLREMRG   75 (88)
T ss_dssp             SCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEET------TEEGGGSCHHHHHHHHHHCCE
T ss_pred             CceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC------CEECCCCCHHHHHHHHhcCCC
Confidence            469999976556899999999999999955599999999983      23333  34455555554444

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=97.43  E-value=0.0005  Score=56.81  Aligned_cols=52  Identities=21%  Similarity=0.379  Sum_probs=43.0

Q ss_pred             ccceEEEeecC---CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~k---Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.++|+|.|   ++|+.+..+.+     .++||..|.+|+.|+++|.+++||+|+.|-
T Consensus        27 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vn   86 (130)
T 1i16_A           27 EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG   86 (130)
T ss_dssp             SEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECS
T ss_pred             CCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            34667788875   89999976544     479999999999999996699999999983

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.42  E-value=0.00034  Score=57.37  Aligned_cols=53  Identities=32%  Similarity=0.634  Sum_probs=45.0

Q ss_pred             hccceEEEeec----CCcceeEeec-------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIE----QPYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~----kPlgl~~~~~-------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...+.++|+|.    .++|+.+...       .+++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   75 (129)
T 2dmz_A           12 SLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVD   75 (129)
T ss_dssp             CCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEET
T ss_pred             CCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence            35678999994    4789999653       34699999999999999999899999999984

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.42  E-value=0.0009  Score=65.39  Aligned_cols=93  Identities=9%  Similarity=-0.049  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC----CChHHHHHHHHHHHHcCCCCHHHH
Q 019871          217 QDLREGLQLYRTG---KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL----NQVKAGLSALEDALLAGYEDFKRV  289 (334)
Q Consensus       217 ~~~nlG~al~~~g---~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l----G~~eeAl~~lekAIelgp~~~~~i  289 (334)
                      ..+++|.++.+.|   ++++|+..|+++++..|..   +..++++|.+|...    +++++|+.+|++|+   |.+....
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~  251 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW  251 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence            6679999999999   9999999999999999987   56779999999766    79999999999998   4444321


Q ss_pred             hcChhhHHH--hcChHHHHHHHHHHHhhh
Q 019871          290 RTDPDLENL--RASEEFDVLLKRFDESFI  316 (334)
Q Consensus       290 ~~Dpdl~~L--r~dp~F~~lL~~~~e~~~  316 (334)
                      . .-...-+  ....++.++++-|++...
T Consensus       252 ~-~Lg~~~~~~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          252 V-SLAQLLYDFPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             H-HHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            1 1111101  234567777777777663

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=97.41  E-value=0.0002  Score=57.32  Aligned_cols=49  Identities=20%  Similarity=0.378  Sum_probs=41.7

Q ss_pred             ceEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.    ..+|+.+.. .+.+++|..|.+||.|+++|.+++||+|+.+-
T Consensus         2 ~~~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~In   54 (106)
T 2la8_A            2 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN   54 (106)
T ss_dssp             EEEEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEES
T ss_pred             eEEEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            46788886    468888855 56689999999999999999999999999983

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.40  E-value=0.00093  Score=66.19  Aligned_cols=100  Identities=10%  Similarity=-0.056  Sum_probs=69.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCHHHHhcCh
Q 019871          224 QLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-----GYEDFKRVRTDP  293 (334)
Q Consensus       224 al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----gp~~~~~i~~Dp  293 (334)
                      .....|+|++|+..|+++|++     .|+++....++.|+|.+|..+|++++|+..+++||++     ||+.+..+..--
T Consensus       307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            334678999999999999975     5676655688999999999999999999999999875     677665332222


Q ss_pred             hhHH-HhcChHHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871          294 DLEN-LRASEEFDVLLKRFDESFINENAINAIKSLFG  329 (334)
Q Consensus       294 dl~~-Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~  329 (334)
                      .+.. +....+|.+++.-|++      |++-.+..+|
T Consensus       387 nLa~~~~~qg~~~eA~~~~~~------Al~i~~~~lG  417 (433)
T 3qww_A          387 KLGRLYMGLENKAAGEKALKK------AIAIMEVAHG  417 (433)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTC
T ss_pred             HHHHHHHhccCHHHHHHHHHH------HHHHHHHHcC
Confidence            2222 2234455555555544      4444444444

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=97.40  E-value=6.6e-05  Score=61.49  Aligned_cols=56  Identities=27%  Similarity=0.456  Sum_probs=44.3

Q ss_pred             hhhhccceEEEeec----CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           79 EQEEKYEEYEVEIE----QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        79 ~~~~~~~~~~v~l~----kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+-.+.....|+|.    .++|+.+..+.     +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus        18 ~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VN   82 (118)
T 3b76_A           18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVD   82 (118)
T ss_dssp             CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEET
T ss_pred             cccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            44445556667775    46899987654     3479999999999999999999999999983

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.39  E-value=0.00019  Score=56.74  Aligned_cols=52  Identities=33%  Similarity=0.618  Sum_probs=44.2

Q ss_pred             ccceEEEeec---CCcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIE---QPYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~---kPlgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.+.|+|.   .++|+.+..+.        +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   67 (105)
T 1wha_A            5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN   67 (105)
T ss_dssp             CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEES
T ss_pred             CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence            3477888886   67899997644        3699999999999999999999999999983

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=97.39  E-value=0.00017  Score=55.64  Aligned_cols=51  Identities=24%  Similarity=0.563  Sum_probs=43.0

Q ss_pred             cceEEEeecCC---cceeEeec------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQP---YGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~kP---lgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.++|+|.++   +|+.+...      .+++++|..|.+++.|+++|.+++||+|+.+-
T Consensus         3 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vn   62 (97)
T 2iwn_A            3 SETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVD   62 (97)
T ss_dssp             EEEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEET
T ss_pred             cEEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEEC
Confidence            46788888865   89999665      24699999999999999998899999999984

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=97.38  E-value=0.00018  Score=56.53  Aligned_cols=51  Identities=31%  Similarity=0.603  Sum_probs=42.3

Q ss_pred             cceEEEeec---CCcceeEeecCCC-ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~~~~g-~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+..+|+|.   .++|+.+..+.++ +++|..|.|++.|+++|.+++||+|+.+-
T Consensus        10 ~~~~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn   64 (104)
T 3i4w_A           10 REPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVN   64 (104)
T ss_dssp             SSCEEEEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEET
T ss_pred             CccEEEEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence            345667776   4789999776665 99999999999999999999999999984

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.36  E-value=0.00024  Score=54.48  Aligned_cols=51  Identities=27%  Similarity=0.533  Sum_probs=42.9

Q ss_pred             ccceEEEeecC-----CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~k-----Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.+..+|+|.|     .+|+.+..+. +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vn   60 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVN   60 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             CcceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            34667888875     6899987654 4599999999999999999 99999999984

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=97.35  E-value=0.0002  Score=56.79  Aligned_cols=54  Identities=26%  Similarity=0.537  Sum_probs=44.7

Q ss_pred             hhccceEEEee--c---CCcceeEeec-------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           81 EEKYEEYEVEI--E---QPYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        81 ~~~~~~~~v~l--~---kPlgl~~~~~-------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +...+.++|+|  +   .++|+.+..+       .+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn   73 (108)
T 2jre_A            8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVD   73 (108)
T ss_dssp             SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEET
T ss_pred             ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence            34567899999  4   4589999654       34599999999999999999999999999983

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=97.34  E-value=0.00024  Score=57.11  Aligned_cols=60  Identities=25%  Similarity=0.529  Sum_probs=43.3

Q ss_pred             CCCchhhhccceEEEeecC---CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           75 SGSEEQEEKYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        75 ~~~~~~~~~~~~~~v~l~k---Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++-..+-..-+.++|+|.|   ++|+.+..+.  +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        14 d~~t~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn   78 (112)
T 2r4h_A           14 GTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEIN   78 (112)
T ss_dssp             ---------CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEET
T ss_pred             CCcccccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            3333455556778888874   6888886543  4689999999999999999899999999983

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.31  E-value=0.0014  Score=73.81  Aligned_cols=81  Identities=15%  Similarity=0.033  Sum_probs=45.3

Q ss_pred             HHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------CcchHHHHHHHHH
Q 019871          204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----------------------EESSVASYNVACC  261 (334)
Q Consensus       204 ~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~----------------------~e~~~a~yNlA~a  261 (334)
                      .|..++........+..+|.++.++|+|++|++++.+|...++=.                      ...+.-+..++..
T Consensus      1210 ~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A         1210 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 1289 (1630)
T ss_pred             CHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence            333333333333444566667777777777777776664332200                      0012234455556


Q ss_pred             HHHCCChHHHHHHHHHHHHcCCC
Q 019871          262 YSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       262 y~~lG~~eeAl~~lekAIelgp~  284 (334)
                      |...|.+++||..|++||.+++.
T Consensus      1290 Ye~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A         1290 YQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred             HHHcCCHHHHHHHHHHHhccChh
Confidence            77777777777777777777654

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.29  E-value=0.00018  Score=57.13  Aligned_cols=53  Identities=26%  Similarity=0.577  Sum_probs=44.3

Q ss_pred             hccceEEEeec---CCcceeEee---c-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIE---QPYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~---kPlgl~~~~---~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +..+.+.|+|.   .++|+.+..   +     .+.++||..|.+++.|+++|.+++||+|+.+-
T Consensus         6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   69 (107)
T 1wf8_A            6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD   69 (107)
T ss_dssp             CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEET
T ss_pred             CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence            35677888885   588999966   1     34589999999999999999999999999983

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=97.28  E-value=0.00011  Score=57.71  Aligned_cols=49  Identities=24%  Similarity=0.517  Sum_probs=38.4

Q ss_pred             eEEEeecC----CcceeEeecCC-----------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~k----Plgl~~~~~~~-----------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|.|.|.|    .+|+.+....+           .+++|..|.++|.|+++|.+++||+|+.+-
T Consensus         5 p~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~in   68 (103)
T 2fcf_A            5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVD   68 (103)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEET
T ss_pred             CEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEEC
Confidence            37777764    47888854322           589999999999999999899999999983

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=97.26  E-value=0.00035  Score=55.81  Aligned_cols=50  Identities=28%  Similarity=0.524  Sum_probs=43.4

Q ss_pred             ceEEEeec----CCcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE----QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.    .++|+.+..+.    +.++||..|.+++.|+++|.+++||+|+.+-
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn   62 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVN   62 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence            67888887    46999996652    5699999999999999999999999999983

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.24  E-value=0.00036  Score=55.60  Aligned_cols=50  Identities=34%  Similarity=0.613  Sum_probs=42.3

Q ss_pred             ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +..+|+|.   .++|+.+..+.+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        15 ~~~~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vn   67 (111)
T 2dlu_A           15 HVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIG   67 (111)
T ss_dssp             EEEEEEEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEES
T ss_pred             ceEEEEEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            34556665   579999976666899999999999999999899999999983

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.22  E-value=0.00031  Score=55.70  Aligned_cols=51  Identities=37%  Similarity=0.755  Sum_probs=43.0

Q ss_pred             cceEEEeecC---CcceeEe-----ec-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQ---PYGLKFA-----KG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~k---Plgl~~~-----~~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.++|+|.|   ++|+.+.     .+     .+++++|..|.++|.|+++|.+++||+|+.+-
T Consensus         8 ~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   71 (108)
T 1q7x_A            8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN   71 (108)
T ss_dssp             SSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEET
T ss_pred             CcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence            4678888874   8999996     21     24689999999999999999999999999983

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=97.21  E-value=0.0004  Score=53.73  Aligned_cols=50  Identities=36%  Similarity=0.747  Sum_probs=42.0

Q ss_pred             ceEEEeec---CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.|+|.|.   .++|+.+..+.     +++++|..|.+++.|+++|.+++||+|+.+-
T Consensus         5 ~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vn   62 (96)
T 1d5g_A            5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN   62 (96)
T ss_dssp             CEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEET
T ss_pred             CEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEEC
Confidence            45777775   68899996542     3599999999999999999899999999983

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0025  Score=59.67  Aligned_cols=130  Identities=13%  Similarity=0.054  Sum_probs=85.8

Q ss_pred             HHHhhhhHHHHhhcccchhhhhchhcHH------H-HH-HHhhchhhhhh--hHHHHHHHHHHHHHhhcc------CHH-
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTGELSEK------E-II-RAERNSGVISN--RVREIQMQNYMKKKEQKE------RRE-  216 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~~l~ek------~-~~-~a~~n~g~~~~--~l~e~q~~~y~~~iel~~------~~~-  216 (334)
                      +...+|.+|...+++.++++......+.      . .. ....+.|.+..  +..+.++..|.+.++...      ... 
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            3467899999999998888743322211      0 00 01112232221  123445555555554322      122 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~---~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      ...++|..++..|+|++|+..+++++..-..   ......++.+++.+|..+|++++|...|++|+...+
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            2349999999999999999999999865322   122357899999999999999999999999988743

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=97.20  E-value=0.00044  Score=54.17  Aligned_cols=51  Identities=35%  Similarity=0.581  Sum_probs=42.5

Q ss_pred             cceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.++|+|.   .++|+.+..+.       +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus         3 ~~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   63 (102)
T 2i1n_A            3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN   63 (102)
T ss_dssp             EEEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             ceEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            355677776   47899997643       3599999999999999999999999999983

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.20  E-value=0.0027  Score=62.57  Aligned_cols=105  Identities=12%  Similarity=0.006  Sum_probs=71.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCHHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-----GYEDFKR  288 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----gp~~~~~  288 (334)
                      ++.-..+..+|+|++|+..|++++++     .|+++....++.|+|.+|..+|++++|+..++++|++     ||+.+..
T Consensus       291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            34455677899999999999999976     3555555678999999999999999999999999875     6666553


Q ss_pred             HhcChhhHHH-hcChHHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871          289 VRTDPDLENL-RASEEFDVLLKRFDESFINENAINAIKSLFG  329 (334)
Q Consensus       289 i~~Dpdl~~L-r~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~  329 (334)
                      +..--.+..+ ....++.+++.-|.      +|++-++..+|
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~------~Al~i~~~~lG  406 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLR------LAFDIMRVTHG  406 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHhcC
Confidence            3322222222 22344555554443      44444555554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.20  E-value=0.0041  Score=59.26  Aligned_cols=30  Identities=7%  Similarity=-0.232  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .++.|+.++...+|+  +|.+.++++.+..|+
T Consensus       256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          256 TFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence            444444444444444  444444444444444

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.19  E-value=0.00064  Score=53.58  Aligned_cols=52  Identities=27%  Similarity=0.533  Sum_probs=42.8

Q ss_pred             ccceEEEeec---CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~---kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++.++|+|.   .++|+.+..+.  +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         7 ~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~in   63 (103)
T 1uep_A            7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVD   63 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEET
T ss_pred             CceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEEC
Confidence            4566777777   46888886542  4589999999999999999999999999983

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.19  E-value=0.0023  Score=49.67  Aligned_cols=52  Identities=10%  Similarity=0.027  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE  250 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e  250 (334)
                      ..+.+.+.++++++|+...+. .+|..+++.|+|++|+..|+++++.+|.++.
T Consensus        26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            445577888999999987764 9999999999999999999999999999643

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.18  E-value=0.00023  Score=57.14  Aligned_cols=50  Identities=28%  Similarity=0.517  Sum_probs=42.3

Q ss_pred             ceEEEeec---CCcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.+.|+|.   .++|+.+..+.+   ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        17 ~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   72 (116)
T 2dm8_A           17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVN   72 (116)
T ss_dssp             SCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEET
T ss_pred             CEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEEC
Confidence            45677775   678999976554   699999999999999999899999999983

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.18  E-value=0.00045  Score=53.50  Aligned_cols=47  Identities=28%  Similarity=0.468  Sum_probs=39.9

Q ss_pred             EEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|.|.    .++|+.+.. .+++++|..|.+++.|++++.+++||+|+.+-
T Consensus         8 r~v~l~k~~~~~lG~~i~~-~~~~v~V~~V~~~spA~~ag~L~~GD~I~~in   58 (91)
T 2e7k_A            8 RMVGIRKTAGEHLGVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEVN   58 (91)
T ss_dssp             CBCCBCCCTTCCCCEEEEE-SSSSEEEEEECSSSHHHHHCCCCTTCEEEEET
T ss_pred             EEEEEEECCCCcEeEEEEe-cCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            456665    379999965 56799999999999999988899999999983

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=97.18  E-value=0.00037  Score=55.12  Aligned_cols=52  Identities=27%  Similarity=0.513  Sum_probs=41.9

Q ss_pred             ccceEEEeec--CCcceeEeec-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIE--QPYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~--kPlgl~~~~~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.++|+|.  .++|+.+..+     .+.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus         9 ~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~in   67 (106)
T 3axa_A            9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD   67 (106)
T ss_dssp             -CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEET
T ss_pred             CceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            4466778775  5678888542     34589999999999999999999999999983

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.17  E-value=0.003  Score=52.71  Aligned_cols=83  Identities=12%  Similarity=0.107  Sum_probs=68.8

Q ss_pred             HHHHHHHhhc-cCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          203 QNYMKKKEQK-ERREQDLREGLQLYRTGKYEV---AREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       203 ~~y~~~iel~-~~~~~~~nlG~al~~~g~yee---Al~~fekALeld-P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      ..|.+..... +.....|+.+.++.+..+-.+   +|..++..+..+ |..  ....+|.+|..+.++|+|++|+.+++.
T Consensus        22 ~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~--~Rd~lY~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           22 KKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4455544433 566777899999999888887   999999999877 532  257999999999999999999999999


Q ss_pred             HHHcCCCCHH
Q 019871          278 ALLAGYEDFK  287 (334)
Q Consensus       278 AIelgp~~~~  287 (334)
                      .|+..|++..
T Consensus       100 lL~~eP~n~Q  109 (126)
T 1nzn_A          100 LLQTEPQNNQ  109 (126)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHHhCCCCHH
Confidence            9999999865

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=97.17  E-value=0.00078  Score=53.64  Aligned_cols=49  Identities=24%  Similarity=0.404  Sum_probs=40.8

Q ss_pred             eEEEeec----CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE----QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+|.    .++|+.+.... .++++|..|.+++.|+++|.|++||+|+.+-
T Consensus         2 ~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~in   55 (112)
T 1qau_A            2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN   55 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred             EEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEEC
Confidence            5778884    36899997654 3499999999999999999559999999984

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=97.17  E-value=0.00038  Score=56.02  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=42.7

Q ss_pred             cceEEEeecCC----cceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQP----YGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~kP----lgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...+.|+|.|+    +|+.+..+.     +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus        19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~in   78 (117)
T 2o2t_A           19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAIN   78 (117)
T ss_dssp             SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEET
T ss_pred             CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            35688888875    788886543     3589999999999999999999999999983

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.16  E-value=0.0025  Score=60.72  Aligned_cols=157  Identities=11%  Similarity=-0.014  Sum_probs=92.1

Q ss_pred             HhhhhHHHHhhcccchhhhhchh-------cHHHH----HHHhhchhhhhhhHHHHHHHHHHHHHhhcc-----CHHHHH
Q 019871          156 QRVGPLLMKMQKRYGKMEQTGEL-------SEKEI----IRAERNSGVISNRVREIQMQNYMKKKEQKE-----RREQDL  219 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~~l-------~ek~~----~~a~~n~g~~~~~l~e~q~~~y~~~iel~~-----~~~~~~  219 (334)
                      ...|.++...++..++++.+...       ..-+.    +......|.     ...+..-+.+..+.+|     ++....
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r-----~d~A~k~l~~~~~~~~d~~~~~d~~l~  178 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN-----VSTASTIFDNYTNAIEDTVSGDNEMIL  178 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhcCccccccchHHHH
Confidence            46777888888888887632222       11111    122222222     2333333333334455     355556


Q ss_pred             HHHHH--HHHcC--CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc----------CCCC
Q 019871          220 REGLQ--LYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA----------GYED  285 (334)
Q Consensus       220 nlG~a--l~~~g--~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel----------gp~~  285 (334)
                      +++.+  .+..|  ++++|+..|+++.+..|++. ....++|   |+..+|++++|...|++.++.          +|++
T Consensus       179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~  254 (310)
T 3mv2_B          179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWK-TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK  254 (310)
T ss_dssp             HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            66655  55556  99999999999999888721 0356777   899999999999999988776          4766


Q ss_pred             HHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHH
Q 019871          286 FKRVRTDPDLENLRASEEFDVLLKRFDESFINENAIN  322 (334)
Q Consensus       286 ~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~  322 (334)
                      ...+..--.+.....+ +-.+++++..+..-++-+|.
T Consensus       255 ~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          255 PTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHH
Confidence            6544222222222222 44555555555544444443

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.14  E-value=0.00038  Score=56.40  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=41.2

Q ss_pred             ceEEEeecC----CcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.|+|.|    ++|+.+..+.+   ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~In   71 (117)
T 1v62_A           15 GPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSID   71 (117)
T ss_dssp             SSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEET
T ss_pred             CcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            346677764    68999976533   569999999999999999999999999983

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=97.14  E-value=0.0004  Score=52.85  Aligned_cols=49  Identities=27%  Similarity=0.601  Sum_probs=40.3

Q ss_pred             ceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.+.|+|.  .|+|+.+..+.  +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus         3 ~~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~in   55 (88)
T 2uzc_A            3 SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSID   55 (88)
T ss_dssp             CEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             cEEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            34666666  77888886543  3479999999999999999 99999999983

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=97.14  E-value=0.00039  Score=53.16  Aligned_cols=49  Identities=33%  Similarity=0.698  Sum_probs=40.2

Q ss_pred             ceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +++.|+++  .|+|+.+..+.  +.+++|..|.|++.|+++| +++||+|+.+-
T Consensus         3 ~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~in   55 (89)
T 2q3g_A            3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSID   55 (89)
T ss_dssp             EEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             cEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            45777777  67788885543  3479999999999999999 99999999983

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=97.13  E-value=0.00038  Score=55.66  Aligned_cols=51  Identities=27%  Similarity=0.574  Sum_probs=42.8

Q ss_pred             cceEEEeec---CCcceeEee---c-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE---QPYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~---~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.+.|+|.   .++|+.+..   +     .+.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus         3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vn   64 (113)
T 2g5m_B            3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD   64 (113)
T ss_dssp             CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEET
T ss_pred             eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            356788886   678999866   2     34599999999999999999999999999983

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.13  E-value=0.0012  Score=52.58  Aligned_cols=49  Identities=18%  Similarity=0.310  Sum_probs=40.4

Q ss_pred             eEEEeec---CCcceeEeec------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE---QPYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~---kPlgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+|+|.   +++|+.+..+      .+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        16 ~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vn   73 (108)
T 2d92_A           16 VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVN   73 (108)
T ss_dssp             CEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEES
T ss_pred             eEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            3556665   6789998654      24589999999999999999999999999983

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=97.12  E-value=0.0004  Score=52.85  Aligned_cols=47  Identities=26%  Similarity=0.574  Sum_probs=39.0

Q ss_pred             EEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.|++.  .|+|+.+..+.+  .+++|..|.|++.|+++| +++||+|+.+-
T Consensus         4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   54 (87)
T 2pa1_A            4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAIN   54 (87)
T ss_dssp             EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            455555  688999976544  589999999999999998 99999999983

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.11  E-value=0.00056  Score=54.23  Aligned_cols=51  Identities=22%  Similarity=0.475  Sum_probs=42.7

Q ss_pred             ccceEEEeec---CCcceeEeecC----------CCceEEEeeCCCCccccccccccCcEeeee
Q 019871           83 KYEEYEVEIE---QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        83 ~~~~~~v~l~---kPlgl~~~~~~----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      ..+.++|+|.   .++|+.+..+.          +.++||..|.+++.|++++.+++||+|+.+
T Consensus         6 ~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~v   69 (107)
T 1uhp_A            6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV   69 (107)
T ss_dssp             SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEE
T ss_pred             CcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence            4477889998   46999996533          469999999999999999449999999998

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.11  E-value=0.00056  Score=55.87  Aligned_cols=57  Identities=25%  Similarity=0.419  Sum_probs=43.4

Q ss_pred             CcceeEeecCC----CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           94 PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        94 Plgl~~~~~~~----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      .+|+.+....+    ++++|..|.+++.|+++|.|++||+|+.+-   |   .++.++..+..++..
T Consensus        33 ~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~in---g---~~v~~~~~~~~~l~~   93 (124)
T 1wh1_A           33 KLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQIN---G---IEVQNREEAVALLTS   93 (124)
T ss_dssp             CCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEES---S---CBCCSHHHHHHHHTC
T ss_pred             cccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---C---EECCCHHHHHHHHHh
Confidence            58999976543    799999999999999998899999999983   2   233444455555544

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=97.11  E-value=0.00059  Score=54.29  Aligned_cols=51  Identities=18%  Similarity=0.447  Sum_probs=42.9

Q ss_pred             cceEEEeec---CCcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE---QPYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.+.+++.   .++|+.+....+     ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        10 ~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~in   68 (111)
T 2koj_A           10 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN   68 (111)
T ss_dssp             CEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEET
T ss_pred             CcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence            466777776   578999976543     689999999999999998899999999984

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=97.11  E-value=0.00064  Score=52.56  Aligned_cols=50  Identities=34%  Similarity=0.632  Sum_probs=41.3

Q ss_pred             cceEEEeecC---CcceeEeec--------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~k---Plgl~~~~~--------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++++.+++.+   .+|+.+..+        .+++++|..|.+++.|+++| +++||+|+.+-
T Consensus         2 ~~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   62 (97)
T 2w4f_A            2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN   62 (97)
T ss_dssp             -CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             ceEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            4678888874   578888653        34799999999999999999 99999999984

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=97.10  E-value=0.00059  Score=52.13  Aligned_cols=50  Identities=26%  Similarity=0.516  Sum_probs=39.9

Q ss_pred             ceEEEeec---CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++.+|+|.   .++|+.+..+.  +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus         2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~in   56 (90)
T 2q9v_A            2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVD   56 (90)
T ss_dssp             EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence            34566666   46788886442  2469999999999999999999999999983

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=97.09  E-value=0.00042  Score=55.90  Aligned_cols=53  Identities=30%  Similarity=0.549  Sum_probs=43.9

Q ss_pred             hccceEEEeecCC---cceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIEQP---YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~kP---lgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...+..+|+|.|+   +|+.+....+ .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        11 ~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   67 (119)
T 1tp5_A           11 IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVN   67 (119)
T ss_dssp             CCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEET
T ss_pred             CCCccEEEEEEECCCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            3446678888754   8899866543 599999999999999998899999999984

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=97.08  E-value=0.00022  Score=62.16  Aligned_cols=52  Identities=27%  Similarity=0.582  Sum_probs=43.7

Q ss_pred             ccceEEEeec---CCcceeEee---c-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIE---QPYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~---kPlgl~~~~---~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.++|+|.   .++|+.+..   +     .++++||..|.+||.|+++|.+++||+|+.|-
T Consensus        78 ~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VN  140 (170)
T 3egg_C           78 RLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD  140 (170)
T ss_dssp             TSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             CceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence            4466888887   589999866   2     24589999999999999999999999999984

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=97.08  E-value=0.00065  Score=53.67  Aligned_cols=49  Identities=37%  Similarity=0.651  Sum_probs=40.6

Q ss_pred             eEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+|.   .++|+.+..+.       +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus         4 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   62 (105)
T 2awx_A            4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN   62 (105)
T ss_dssp             EEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             EEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            4566765   58899996543       2589999999999999999999999999983

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.07  E-value=0.001  Score=52.51  Aligned_cols=49  Identities=29%  Similarity=0.539  Sum_probs=40.8

Q ss_pred             ceEEEeecC----CcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...+|+|.|    ++|+.+..+.+  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus        15 ~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   69 (104)
T 1wi2_A           15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVN   69 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             CCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            446777774    58899976543  489999999999999999 99999999983

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=97.07  E-value=0.0008  Score=52.58  Aligned_cols=50  Identities=32%  Similarity=0.600  Sum_probs=41.9

Q ss_pred             ceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...+|+|.   .++|+.+..+.       +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         7 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   66 (101)
T 2jik_A            7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN   66 (101)
T ss_dssp             EEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             ccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            45677776   57889997653       3699999999999999999899999999983

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=97.07  E-value=0.00019  Score=55.03  Aligned_cols=47  Identities=23%  Similarity=0.608  Sum_probs=38.8

Q ss_pred             EEEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.   .++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus         6 r~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~in   56 (90)
T 2he4_A            6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVN   56 (90)
T ss_dssp             EEEEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             EEEEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCC-CCCCCEEEEEC
Confidence            456665   468888866543 589999999999999999 99999999983

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.07  E-value=0.00059  Score=55.65  Aligned_cols=51  Identities=18%  Similarity=0.376  Sum_probs=42.4

Q ss_pred             cceEEEeecC---CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~k---Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.++|+|.|   .+|+.+..+.  +++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        18 ~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn   73 (123)
T 1ueq_A           18 GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN   73 (123)
T ss_dssp             SEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEET
T ss_pred             CcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            3667888874   5888886543  4579999999999999999999999999983

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.07  E-value=0.00057  Score=55.05  Aligned_cols=46  Identities=28%  Similarity=0.720  Sum_probs=39.8

Q ss_pred             EEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           88 EVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        88 ~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|+|.   .++|+.+....+++++|..|.+++.|+++| +++||+|+.+-
T Consensus        22 ~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~vn   70 (117)
T 1uit_A           22 HVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFN   70 (117)
T ss_dssp             EEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEET
T ss_pred             EEEEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            45555   489999977777899999999999999999 99999999983

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=97.05  E-value=0.00046  Score=52.86  Aligned_cols=50  Identities=28%  Similarity=0.424  Sum_probs=41.0

Q ss_pred             ceEEEeecC----CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.|    ++|+.+..+.  +.+++|..|.++|.|++++.+++||+|+.+-
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~in   59 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVN   59 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEET
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEEC
Confidence            457788775    7899986553  3589999999999999994499999999983

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.05  E-value=0.00047  Score=55.42  Aligned_cols=48  Identities=33%  Similarity=0.527  Sum_probs=39.6

Q ss_pred             eEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...|+|.    .++|+.+.. .+++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        26 ~~~v~l~k~~~~~lG~~i~~-~~~gv~V~~V~~~spA~~aGll~~GD~I~~vn   77 (113)
T 1va8_A           26 VKIVRIEKARDIPLGATVRN-EMDSVIISRIVKGGAAEKSGLLHEGDEVLEIN   77 (113)
T ss_dssp             CEEEEEEECTTCCCCEEEEE-CSSSEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred             eEEEEEEeCCCCceeEEEEe-CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence            3456666    388988854 46799999999999999999559999999983

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=97.05  E-value=0.00081  Score=51.44  Aligned_cols=47  Identities=28%  Similarity=0.583  Sum_probs=39.0

Q ss_pred             EEEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.   .++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus         5 r~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   55 (91)
T 1g9o_A            5 RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVN   55 (91)
T ss_dssp             EEEEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence            345555   678899866543 599999999999999999 99999999983

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.04  E-value=0.00099  Score=53.92  Aligned_cols=55  Identities=29%  Similarity=0.517  Sum_probs=44.9

Q ss_pred             hhhccceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           80 QEEKYEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        80 ~~~~~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +......++|+|.   .++|+.+..+.       +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        12 ~~~~~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn   76 (120)
T 2eno_A           12 VDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN   76 (120)
T ss_dssp             CCEEEEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEET
T ss_pred             CCCCCceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence            3445567788887   46889886543       4599999999999999999999999999983

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=97.04  E-value=0.0011  Score=51.08  Aligned_cols=42  Identities=31%  Similarity=0.660  Sum_probs=37.1

Q ss_pred             CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+..+. +++++|..|.++|.|+++|.+++||+|+.+-
T Consensus        15 ~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~in   57 (93)
T 3o46_A           15 EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVN   57 (93)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred             CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            68999996642 5699999999999999999999999999983

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.03  E-value=0.00048  Score=54.18  Aligned_cols=51  Identities=29%  Similarity=0.531  Sum_probs=42.3

Q ss_pred             cceEEEeec---CCcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE---QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.++|+|.   .++|+.+..+.    +++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        10 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vn   67 (104)
T 2djt_A           10 SGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHIN   67 (104)
T ss_dssp             CCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEET
T ss_pred             CceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            366888887   56778885532    5689999999999999999899999999983

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=97.03  E-value=0.0013  Score=54.16  Aligned_cols=50  Identities=26%  Similarity=0.509  Sum_probs=41.6

Q ss_pred             ceEEEeec----CCcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE----QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..++|.|.    .++|+.+..+.      +.++||..|.++|.|+++|.+++||+|+.|-
T Consensus        25 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vn   84 (127)
T 1wg6_A           25 LTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVN   84 (127)
T ss_dssp             EEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEET
T ss_pred             eEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            45677775    36999996654      2489999999999999999999999999983

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=97.03  E-value=0.00053  Score=52.60  Aligned_cols=47  Identities=23%  Similarity=0.574  Sum_probs=39.2

Q ss_pred             EEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.|++.  .|+|+.+..+.+  .+++|..|.|++.|+++| +++||+|+.+-
T Consensus         5 ~~v~~~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   55 (91)
T 2pkt_A            5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAID   55 (91)
T ss_dssp             EEEEEESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEECCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            455555  688999866543  589999999999999999 99999999984

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=97.03  E-value=0.0019  Score=53.53  Aligned_cols=47  Identities=19%  Similarity=0.478  Sum_probs=38.5

Q ss_pred             EEEeecC----CcceeEeecCCC--------------ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIEQ----PYGLKFAKGRDG--------------GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~k----Plgl~~~~~~~g--------------~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.|    ++|+.+..+.+.              +++|..|.+|+.|+++| +++||+|+.+-
T Consensus        29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vn   93 (132)
T 3l4f_D           29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVN   93 (132)
T ss_dssp             CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEES
T ss_pred             EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            4556553    688888666542              69999999999999999 99999999983

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=97.02  E-value=0.00034  Score=57.48  Aligned_cols=51  Identities=22%  Similarity=0.442  Sum_probs=39.7

Q ss_pred             cceEEEeec----CCcceeEeec-----------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE----QPYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~----kPlgl~~~~~-----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...++|++.    ..+|+.+...           .+.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus        23 ~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn   88 (123)
T 2iwq_A           23 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVD   88 (123)
T ss_dssp             CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEET
T ss_pred             CCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            344566665    3578887432           23589999999999999999999999999984

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.02  E-value=0.0013  Score=52.81  Aligned_cols=50  Identities=30%  Similarity=0.487  Sum_probs=40.9

Q ss_pred             ceEEEeecC----CcceeEeecCC-----------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~-----------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.|+|.|    ++|+.+.-+.+           .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn   79 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVS   79 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEES
T ss_pred             CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEEC
Confidence            447777763    58888855432           589999999999999999899999999983

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=97.02  E-value=0.00021  Score=58.23  Aligned_cols=50  Identities=22%  Similarity=0.463  Sum_probs=41.7

Q ss_pred             ceEEEeec---CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +..+|+|.   .++|+.+..+.     +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus        25 ~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn   82 (117)
T 2fne_A           25 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN   82 (117)
T ss_dssp             EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             ccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            45678887   57889986542     3489999999999999999999999999983

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=97.01  E-value=0.00042  Score=52.29  Aligned_cols=48  Identities=29%  Similarity=0.588  Sum_probs=38.5

Q ss_pred             eEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.|+|.  .|+|+.+..+.  +.+++|..|.|++.|+++| +++||+|+.+-
T Consensus         2 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vn   53 (85)
T 1rgw_A            2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAID   53 (85)
T ss_dssp             EEEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEET
T ss_pred             cEEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            4677777  56788875432  3379999999999999998 99999999983

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=96.98  E-value=0.0014  Score=51.70  Aligned_cols=51  Identities=25%  Similarity=0.479  Sum_probs=41.2

Q ss_pred             hccceEEEeecC----CcceeEeecCC--------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~k----Plgl~~~~~~~--------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++.++|+|.|    ++|+.+..+.+        .+++|..|.+++.|+ +| +++||+|+.+-
T Consensus         4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vn   66 (107)
T 2h2b_A            4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVN   66 (107)
T ss_dssp             CCEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEET
T ss_pred             ccceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEEC
Confidence            345678888884    38888865433        499999999999999 76 99999999983

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.97  E-value=0.001  Score=52.85  Aligned_cols=50  Identities=30%  Similarity=0.622  Sum_probs=42.2

Q ss_pred             ceEEEeec---CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.+.|+|.   .++|+.+..+.     +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         8 ~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn   65 (110)
T 1um1_A            8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN   65 (110)
T ss_dssp             CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEES
T ss_pred             cEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            66888886   46889986642     3589999999999999999999999999983

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=96.97  E-value=0.00097  Score=51.23  Aligned_cols=50  Identities=38%  Similarity=0.638  Sum_probs=40.6

Q ss_pred             ceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.   .++|+.+..+.       +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn   62 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN   62 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            34567775   57899886432       3489999999999999999899999999983

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=96.95  E-value=0.0011  Score=50.14  Aligned_cols=48  Identities=17%  Similarity=0.379  Sum_probs=38.5

Q ss_pred             EEEeec---CCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++|+|.   ..+|+.+..+.++  +++|..|.|++.|+++|.+++||+|+.+-
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vn   54 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN   54 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            456665   4578888554333  79999999999999999899999999983

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=96.95  E-value=0.00089  Score=54.58  Aligned_cols=49  Identities=31%  Similarity=0.545  Sum_probs=41.6

Q ss_pred             ceEEEeec---CCcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeee
Q 019871           85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +.++|+|.   .++|+.+..+.+   .+++|..|.+++.|+++|.+++||+|+.+
T Consensus        25 ~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~I   79 (124)
T 2daz_A           25 ELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEI   79 (124)
T ss_dssp             EEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEE
T ss_pred             ceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence            45678887   478999966533   59999999999999999999999999998

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=96.93  E-value=0.0009  Score=56.12  Aligned_cols=54  Identities=30%  Similarity=0.532  Sum_probs=41.7

Q ss_pred             hhhccceEEEeecC-------CcceeEeecC--------------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           80 QEEKYEEYEVEIEQ-------PYGLKFAKGR--------------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        80 ~~~~~~~~~v~l~k-------Plgl~~~~~~--------------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +......+.|+|.|       ++|+.+..+.              +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        18 ~~~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vn   92 (139)
T 2vz5_A           18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVN   92 (139)
T ss_dssp             ----CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             ccCCCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence            33344567778876       7999885432              3699999999999999999 99999999983

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.92  E-value=0.01  Score=50.63  Aligned_cols=74  Identities=5%  Similarity=0.053  Sum_probs=65.5

Q ss_pred             ccCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          212 KERREQDLREGLQLYRTGKYE---VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       212 ~~~~~~~~nlG~al~~~g~ye---eAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+.....|+.+.++.+..+-+   ++|..++..+..+|..  ...-+|.+|..|.++|+|++|..+++..|+..|+|..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            467788899999998887654   7999999999988865  2679999999999999999999999999999999865

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=96.92  E-value=0.001  Score=53.91  Aligned_cols=55  Identities=31%  Similarity=0.527  Sum_probs=42.9

Q ss_pred             hhhccceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           80 QEEKYEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        80 ~~~~~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +-.+-+..+|+|.   .++|+.+..+.       +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus        19 y~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vn   83 (117)
T 2byg_A           19 YFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVN   83 (117)
T ss_dssp             -CEEEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             ccCCCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            3334455666765   57889986542       4589999999999999999999999999983

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=96.92  E-value=0.00071  Score=52.51  Aligned_cols=48  Identities=27%  Similarity=0.628  Sum_probs=40.2

Q ss_pred             EEEeecC----CcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIEQ----PYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~k----Plgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.|    ++|+.+..+.        +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~in   66 (98)
T 1ihj_A            7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN   66 (98)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEET
T ss_pred             EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            5677776    8999996542        2389999999999999999899999999983

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.92  E-value=0.0017  Score=64.92  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      ..++|..++..|+|++|+.+|.++     .      .|..+|.|+.++|++++|++++++|
T Consensus       125 ~~~IGd~~~~~g~yeeA~~~Y~~a-----~------n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          125 IQQVGDRCYDEKMYDAAKLLYNNV-----S------NFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             ------------CTTTHHHHHHHT-----T------CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-----h------hHHHHHHHHHHhccHHHHHHHHHHc
Confidence            335555555555555555555544     1      2555555555555555555555555

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.91  E-value=0.0045  Score=60.49  Aligned_cols=121  Identities=7%  Similarity=-0.083  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC-------HHHHHH-HHHH--HHhcCCCCCcchHHHHHHHHHHHHCCC
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGK-------YEVARE-KFES--VLGSKPTPEESSVASYNVACCYSKLNQ  267 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~-------yeeAl~-~fek--ALeldP~~~e~~~a~yNlA~ay~~lG~  267 (334)
                      ..++..+.++++++|+...++ .++.++.....       ..+++. .++.  ++..+|.+   +.+|.-+|.++...|+
T Consensus       216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~---a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL---SIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC---HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC---HHHHHHHHHHHHhCCC
Confidence            455678899999999987776 66766642111       111222 2222  23556776   6788888888888999


Q ss_pred             hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHH
Q 019871          268 VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIK  325 (334)
Q Consensus       268 ~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k  325 (334)
                      +++|+.++++|+.++|....++.... +.  --.+++.++++.|++.+..+--.+.+.
T Consensus       293 ~d~A~~~l~rAl~Ln~s~~a~~llG~-~~--~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          293 TDESYQAINTGIDLEMSWLNYVLLGK-VY--EMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHH-HH--HHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHH-HH--HHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence            99999999999999986322222211 11  124688899999988886554444443

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.91  E-value=0.0012  Score=52.52  Aligned_cols=51  Identities=33%  Similarity=0.612  Sum_probs=42.7

Q ss_pred             ccceEEEeecC---CcceeEeec--------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~k---Plgl~~~~~--------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.+.+++.+   .+|+.+..+        .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        13 ~~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   74 (110)
T 1x5q_A           13 EEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN   74 (110)
T ss_dssp             CCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             CcceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            44678888874   788888643        35699999999999999999 99999999984

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.91  E-value=0.0013  Score=51.44  Aligned_cols=48  Identities=31%  Similarity=0.533  Sum_probs=40.0

Q ss_pred             eEEEeecC---CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~k---Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...|+|.|   ++|+.+.... ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus         7 ~r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   58 (102)
T 2d90_A            7 GRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVN   58 (102)
T ss_dssp             SEEEEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTT-CCTTCEEEEES
T ss_pred             CEEEEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            36677774   4899997643 4589999999999999999 99999999983

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=96.91  E-value=0.0015  Score=53.36  Aligned_cols=69  Identities=19%  Similarity=0.313  Sum_probs=47.6

Q ss_pred             ceEEEeecC----CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      +...|+|.|    ++|+.+..+.+     .++||..|.+++.|+++|.+++||+|+.+-   |..+....++..+..+++
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~in---g~~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN---HTPLDQNISHQQAIALLQ  101 (128)
T ss_dssp             EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEES---SCBCSTTSCHHHHHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCCCCCHHHHHHHHH
Confidence            456666663    57888865432     289999999999999999999999999984   322221224445555554


Q ss_pred             H
Q 019871          156 Q  156 (334)
Q Consensus       156 ~  156 (334)
                      .
T Consensus       102 ~  102 (128)
T 2db5_A          102 Q  102 (128)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=96.89  E-value=0.00035  Score=57.52  Aligned_cols=49  Identities=33%  Similarity=0.631  Sum_probs=39.3

Q ss_pred             eEEEeecC-----CcceeEeecC-----------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIEQ-----PYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~k-----Plgl~~~~~~-----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...|+|.|     ++|+.+..+.           +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus        30 ~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn   94 (128)
T 1nf3_C           30 HRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVN   94 (128)
T ss_dssp             CEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEET
T ss_pred             cEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            35566664     4888886432           2489999999999999999899999999983

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=96.87  E-value=0.0021  Score=48.99  Aligned_cols=39  Identities=21%  Similarity=0.474  Sum_probs=34.1

Q ss_pred             CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        94 Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|+.+.. ..++++|..|.|++.|+++| +++||+|+.+-
T Consensus        18 ~lG~~~~~-~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   56 (90)
T 2eaq_A           18 DFGFTIKW-DIPGIFVASVEAGSPAEFSQ-LQVDDEIIAIN   56 (90)
T ss_dssp             CCSEEEEE-ETTEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             cccEEEEe-cCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            48998854 45689999999999999999 99999999983

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=96.86  E-value=0.0012  Score=54.12  Aligned_cols=41  Identities=29%  Similarity=0.615  Sum_probs=37.7

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+..+.+++++|..|.|++.|+++| +++||+|+.+-
T Consensus        39 ~~lG~~l~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vn   79 (124)
T 3tsv_A           39 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVN   79 (124)
T ss_dssp             SCCCEEEEECTTSCEEEEEECTTCHHHHTT-CCTTEEEEEET
T ss_pred             CceeEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            689999977677899999999999999999 99999999983

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.86  E-value=0.00071  Score=53.22  Aligned_cols=49  Identities=27%  Similarity=0.526  Sum_probs=41.4

Q ss_pred             ceEEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.  .|+|+.+..+.+  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus         5 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~in   57 (103)
T 1wf7_A            5 SSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSID   57 (103)
T ss_dssp             CCEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEET
T ss_pred             CEEEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            55788877  889999966543  369999999999999999 99999999983

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=96.86  E-value=0.0012  Score=51.85  Aligned_cols=51  Identities=29%  Similarity=0.569  Sum_probs=41.3

Q ss_pred             hccceEEEeec--CCcceeEeec----------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIE--QPYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~--kPlgl~~~~~----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...+.+.|++.  .++|+.+..+          .+.+++|..|.+++.|++ | +++||+|+.+-
T Consensus         8 ~~~~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vn   70 (103)
T 1n7t_A            8 LAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQAN   70 (103)
T ss_dssp             SSCCCEEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEET
T ss_pred             cccEEEEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEEC
Confidence            34566778877  5788888654          345899999999999999 7 99999999983

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.85  E-value=0.00078  Score=52.12  Aligned_cols=49  Identities=22%  Similarity=0.407  Sum_probs=40.2

Q ss_pred             ceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.|+|.  .|+|+.+..+.  +.+++|..|.|++.|+++| +++||+|+.+-
T Consensus         8 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~in   60 (94)
T 2eeg_A            8 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAIN   60 (94)
T ss_dssp             CCEEEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEET
T ss_pred             ceEEEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            44666666  77888886544  4589999999999999999 99999999983

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0043  Score=58.10  Aligned_cols=64  Identities=11%  Similarity=-0.019  Sum_probs=46.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAG  282 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg  282 (334)
                      .++|.++.+.|+|++|++.|.+++.+.+....   ...+..+++.++...|++++|+..++++++..
T Consensus        59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  125 (434)
T 4b4t_Q           59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA  125 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            47788888888888888888888877665431   12455667777777788888888888877653

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=96.83  E-value=0.00091  Score=54.62  Aligned_cols=68  Identities=22%  Similarity=0.380  Sum_probs=49.1

Q ss_pred             cceEEEeec----CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeeccccccccccccc--hhhHHHHHHH
Q 019871           84 YEEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQ  156 (334)
Q Consensus        84 ~~~~~v~l~----kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~--~~~v~sai~~  156 (334)
                      .+.++|+|.    ..+|+.+....+ ++++|..|.+++.|+++|.|++||+|+.+-   |   .++.+  +..+...+..
T Consensus         7 ~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~in---g---~~v~~~~~~~~~~~l~~   80 (127)
T 1b8q_A            7 PNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN---D---RPLVDLSYDSALEVLRG   80 (127)
T ss_dssp             CCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEET---T---EECSSSCHHHHHHHHHS
T ss_pred             CceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC---C---EECCCCCHHHHHHHHHh
Confidence            356777774    478898866543 599999999999999999559999999984   2   23334  4455555554


Q ss_pred             h
Q 019871          157 R  157 (334)
Q Consensus       157 R  157 (334)
                      .
T Consensus        81 ~   81 (127)
T 1b8q_A           81 I   81 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=96.82  E-value=0.0017  Score=49.77  Aligned_cols=61  Identities=25%  Similarity=0.428  Sum_probs=42.3

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhH
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V  161 (334)
                      .++|+.+    .|++||..|.+||.|+++|.+++||+|+.+-   |..+ ...+..++...++...+.+
T Consensus        13 ~~~G~~~----~~gv~V~~V~~gspA~~aG~L~~GD~Il~in---g~~v-~~~~~~~~~~~i~~~~~~v   73 (88)
T 3e17_A           13 EEYGLRL----GSQIFVKEMTRTGLATKDGNLHEGDIILKIN---GTVT-ENMSLTDARKLIEKSRGKL   73 (88)
T ss_dssp             CCCCEEE----EEEEEEEEECTTSHHHHHCCCCTTCEEEEET---TEEC-TTCCHHHHHHHHHHTTTEE
T ss_pred             CCCCEEE----eCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEEC-CCCCHHHHHHHHHcCCCeE
Confidence            3577776    3589999999999999999999999999984   2211 1123345555555544433

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=96.81  E-value=0.0022  Score=49.44  Aligned_cols=48  Identities=31%  Similarity=0.615  Sum_probs=39.4

Q ss_pred             ceEEEeecC--CcceeEeecC----------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k--Plgl~~~~~~----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+++|++.|  ++|+.+..+.          +.+++|..|.|++.|++ + +++||+|+.+-
T Consensus         3 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vn   62 (95)
T 1mfg_A            3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQAN   62 (95)
T ss_dssp             EEEEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEET
T ss_pred             eEEEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEEC
Confidence            457787774  6888886543          34899999999999999 6 99999999983

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=96.81  E-value=0.0015  Score=53.24  Aligned_cols=51  Identities=18%  Similarity=0.445  Sum_probs=42.2

Q ss_pred             cceEEEeecC---CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~k---Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.+.|++.+   ++|+.+....+     .+++|..|.|++.|+++|.+++||+|+.+-
T Consensus        29 ~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~In   87 (121)
T 2kom_A           29 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN   87 (121)
T ss_dssp             CEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEET
T ss_pred             CeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            4667788764   67888865542     589999999999999998899999999984

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=96.80  E-value=0.00061  Score=55.61  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=52.2

Q ss_pred             ceEEEeecC----CcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~  158 (334)
                      ...+|+|.|    .+|+.+..+.+  .+++|..|.+||.|+++|.+++||+|+.+-   |..+ .......+...++...
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~in---g~~v-~~~~~~~~~~~l~~~~   94 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN---GRSI-KGKTKVEVAKMIQEVK   94 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEET---TEEC-TTCCHHHHHHHHHHSC
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEEC---CEEC-CCCCHHHHHHHHHcCC
Confidence            445666765    58899866543  479999999999999999999999999984   2111 1112334555555544


Q ss_pred             hhHHHHhhc
Q 019871          159 GPLLMKMQK  167 (334)
Q Consensus       159 G~V~lkLek  167 (334)
                      +.+.+.+.+
T Consensus        95 ~~v~l~v~r  103 (125)
T 3hpk_A           95 GEVTIHYNK  103 (125)
T ss_dssp             SEEEEEEEE
T ss_pred             CeEEEEEEE
Confidence            444444433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.79  E-value=0.0091  Score=50.32  Aligned_cols=75  Identities=5%  Similarity=0.049  Sum_probs=64.7

Q ss_pred             hccCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          211 QKERREQDLREGLQLYRTGKY---EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       211 l~~~~~~~~nlG~al~~~g~y---eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      -.|....-|+.+.++.+..+-   .++|..++..++.+|..  ....+|.+|..+.++|+|++|+.+++..|+..|+|..
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            346677788999999887765   47999999999988854  2579999999999999999999999999999999876

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=96.78  E-value=0.00037  Score=56.95  Aligned_cols=53  Identities=25%  Similarity=0.449  Sum_probs=40.5

Q ss_pred             hccceEEEeecC----CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~k----Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...+...|+|.|    ++|+.+..+.+     .++||..|.|+|.|++++.+++||+|+.+-
T Consensus        21 ~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~Vn   82 (120)
T 2iwo_A           21 QSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTIC   82 (120)
T ss_dssp             ----CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred             CCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEEC
Confidence            334557788773    78899866532     389999999999999995599999999983

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=96.77  E-value=0.0032  Score=49.90  Aligned_cols=47  Identities=19%  Similarity=0.490  Sum_probs=38.0

Q ss_pred             EEEeec----CCcceeEeecCC--------------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE----QPYGLKFAKGRD--------------GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~----kPlgl~~~~~~~--------------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.    .++|+.+..+.+              .+++|..|.+++.|+++| +++||+|+.+-
T Consensus         9 ~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vn   73 (109)
T 1q3o_A            9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVN   73 (109)
T ss_dssp             EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            455554    578999865543              179999999999999999 99999999983

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=96.77  E-value=0.0014  Score=56.27  Aligned_cols=51  Identities=33%  Similarity=0.589  Sum_probs=42.4

Q ss_pred             cceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++..+|+|.   .++|+.+.-+.       +.++||..|.|++-|+++|.+++||+|+.+-
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vn   64 (196)
T 3gsl_A            4 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN   64 (196)
T ss_dssp             EEEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             cEEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence            345566666   78999997653       4589999999999999999999999999984

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=96.76  E-value=0.0011  Score=53.55  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             ccceEEEeecC----CcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~k----Plgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.+.|.|.|    ++|+.+..+.+   .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        13 ~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~in   71 (119)
T 1x6d_A           13 LDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSIN   71 (119)
T ss_dssp             CTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEET
T ss_pred             CCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            33456666654    78999965543   489999999999999999999999999983

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.75  E-value=0.0035  Score=50.94  Aligned_cols=54  Identities=24%  Similarity=0.436  Sum_probs=44.1

Q ss_pred             hhccceEEEeecC----CcceeEeec------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           81 EEKYEEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        81 ~~~~~~~~v~l~k----Plgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      -...+.++|+|.|    .+|+.+..+      .+..++|..|.+++.|+++|.+++||+|+.+-
T Consensus        11 ~~~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~in   74 (122)
T 1v5q_A           11 VVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN   74 (122)
T ss_dssp             CCCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEET
T ss_pred             cccceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            3456788999873    588888643      23579999999999999999899999999983

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.75  E-value=0.0075  Score=46.91  Aligned_cols=39  Identities=18%  Similarity=0.119  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA  259 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA  259 (334)
                      ..++|.+++++|+++.|+..++++++++|++   ..+..|++
T Consensus        49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~n~~   87 (104)
T 2v5f_A           49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHhhHH
Confidence            3499999999999999999999999999998   57888887

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.73  E-value=0.00092  Score=52.46  Aligned_cols=52  Identities=19%  Similarity=0.428  Sum_probs=41.8

Q ss_pred             ccceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...++.|++.  .|+|+.+..+.  +.+++|..|.+++.|++++.+++||+|+.+-
T Consensus         9 ~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~in   64 (100)
T 2edp_A            9 SFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNIN   64 (100)
T ss_dssp             CCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEET
T ss_pred             CcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            4567888887  57888886543  3479999999999999993499999999983

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.72  E-value=0.0036  Score=50.01  Aligned_cols=50  Identities=26%  Similarity=0.476  Sum_probs=39.2

Q ss_pred             ceEEEeec--CCcceeEeecC---C-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE--QPYGLKFAKGR---D-GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~--kPlgl~~~~~~---~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +...|+|.  .++|+.+.-+.   . .++||..|.+++.|+++|.+++||+|+.+-
T Consensus        15 ~~~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vn   70 (109)
T 1wi4_A           15 AFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN   70 (109)
T ss_dssp             TEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEET
T ss_pred             cEEEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEEC
Confidence            34455665  67778885432   2 279999999999999999999999999983

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=96.72  E-value=0.0017  Score=49.87  Aligned_cols=46  Identities=33%  Similarity=0.582  Sum_probs=37.1

Q ss_pred             EEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           88 EVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        88 ~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|+|.   ..+|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus         8 ~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~in   57 (95)
T 3r68_A            8 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVN   57 (95)
T ss_dssp             EEEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHT-CCTTEEEEEET
T ss_pred             EEEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence            45554   578899965543 399999999999999999 99999999983

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=96.71  E-value=0.0018  Score=50.94  Aligned_cols=47  Identities=23%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             EEEeecC----CcceeEee---------cCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIEQ----PYGLKFAK---------GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~k----Plgl~~~~---------~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|.|.|    ++|+.+..         ..+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vn   76 (104)
T 2z17_A           17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN   76 (104)
T ss_dssp             CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEET
T ss_pred             eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            4455554    58898865         124599999999999999999 99999999983

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.71  E-value=0.00065  Score=53.11  Aligned_cols=51  Identities=25%  Similarity=0.621  Sum_probs=42.5

Q ss_pred             cceEEEeec---CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           84 YEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.+.+++.   .++|+.+..+.+  .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        10 ~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vn   65 (103)
T 1wfv_A           10 FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN   65 (103)
T ss_dssp             SCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEET
T ss_pred             ceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            456778886   358888876654  389999999999999999899999999983

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.69  E-value=0.004  Score=50.12  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=40.3

Q ss_pred             ceEEEeecC----CcceeEeecCC--CceEEEeeCCCCccccc-cccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKT-GMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~--g~v~v~~~~~~~~a~~~-~~i~~gD~v~~~s  134 (334)
                      +...|+|.|    ++|+.+..+.+  .+++|..|.+++.|+++ +.+++||+|+.+-
T Consensus        15 ~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~in   71 (119)
T 2cs5_A           15 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLIN   71 (119)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEET
T ss_pred             CeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEEC
Confidence            346778775    58999865533  37999999999999999 3499999999983

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=96.66  E-value=0.0004  Score=51.57  Aligned_cols=39  Identities=31%  Similarity=0.564  Sum_probs=34.4

Q ss_pred             cCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        92 ~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+++|+.+.    ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        12 ~~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~in   50 (81)
T 2rcz_A           12 NEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKIN   50 (81)
T ss_dssp             TCCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEET
T ss_pred             CCCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence            467888774    789999999999999998899999999983

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.65  E-value=0.0008  Score=53.48  Aligned_cols=52  Identities=27%  Similarity=0.570  Sum_probs=43.3

Q ss_pred             ccceEEEeecC---CcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~k---Plgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+...|+|.|   ++|+.+..+.+ .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        13 ~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vn   68 (113)
T 1um7_A           13 AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVN   68 (113)
T ss_dssp             CCSEEEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEES
T ss_pred             CCceEEEEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            34668888874   78999866543 599999999999999998899999999983

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.64  E-value=0.002  Score=50.38  Aligned_cols=47  Identities=30%  Similarity=0.617  Sum_probs=38.7

Q ss_pred             EEEeecC-----CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIEQ-----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~k-----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|.|.+     ++|+.+....  +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        10 ~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   63 (101)
T 1uez_A           10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVN   63 (101)
T ss_dssp             EEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEET
T ss_pred             EEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            4455544     7899996654  3589999999999999999 99999999983

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=96.64  E-value=0.0038  Score=48.37  Aligned_cols=46  Identities=17%  Similarity=0.551  Sum_probs=37.0

Q ss_pred             EEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           88 EVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        88 ~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|.   .++|+.+..+. .++++|..|.+++.|+++| +++||+|+.+-
T Consensus        12 ~~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   61 (98)
T 2jxo_A           12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVN   61 (98)
T ss_dssp             EEEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             EEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            34454   45788885543 3499999999999999999 99999999983

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=96.63  E-value=0.0026  Score=52.63  Aligned_cols=41  Identities=32%  Similarity=0.487  Sum_probs=35.0

Q ss_pred             CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeee
Q 019871           93 QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        93 kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .++|+.+..+.     +.++||..|.+++.|+++|.+++||+|+.+
T Consensus        48 ~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~i   93 (131)
T 1wfg_A           48 AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEW   93 (131)
T ss_dssp             TTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred             CCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence            35899985432     238999999999999999999999999998

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.63  E-value=0.00081  Score=67.27  Aligned_cols=103  Identities=11%  Similarity=0.008  Sum_probs=43.9

Q ss_pred             HHHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCC
Q 019871          153 TIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDLREGLQLYRTGK  230 (334)
Q Consensus       153 ai~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~  230 (334)
                      ++.+.++.+|.++++.....+.... . .  ..+|.+.|....  +..+.+...|.+.       .....+|.+++++|+
T Consensus        95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-p-n--~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~  163 (449)
T 1b89_A           95 YVETELIFALAKTNRLAELEEFING-P-N--NAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGE  163 (449)
T ss_dssp             --------------CHHHHTTTTTC-C-------------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTC
T ss_pred             hhHHHHHHHHHHhCCHHHHHHHHcC-C-c--HHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhcc
Confidence            3455556666676666554443221 1 1  113334443332  2223333444332       234588899999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~  274 (334)
                      |++|+++|++|     .+   +.+|-+...++..+|+++.|..+
T Consensus       164 yq~AVea~~KA-----~~---~~~Wk~v~~aCv~~~ef~lA~~~  199 (449)
T 1b89_A          164 YQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMC  199 (449)
T ss_dssp             HHHHHHHHHHH-----TC---HHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHHHHHc-----CC---chhHHHHHHHHHHcCcHHHHHHH
Confidence            99999999988     12   34666665555555555555443

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=96.59  E-value=0.0027  Score=50.26  Aligned_cols=52  Identities=27%  Similarity=0.548  Sum_probs=40.5

Q ss_pred             hccceEEEeecC------CcceeEeec-CCC--ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIEQ------PYGLKFAKG-RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~k------Plgl~~~~~-~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      |.++.-.|.|.|      ++|+.+... .+|  +++|..|.+++.|+++| +++||+|+.+-
T Consensus         3 ~~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vn   63 (94)
T 3kzd_A            3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEIN   63 (94)
T ss_dssp             -CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             cccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            445555666664      388888663 333  89999999999999999 99999999983

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.59  E-value=0.0021  Score=50.19  Aligned_cols=47  Identities=28%  Similarity=0.553  Sum_probs=38.3

Q ss_pred             EEEeec---C-CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---Q-PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---k-Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|+|.   + ++|+.+....  ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus        12 ~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~in   64 (100)
T 2eeh_A           12 HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVN   64 (100)
T ss_dssp             CCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEET
T ss_pred             EEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            445555   2 3999996653  3589999999999999999 99999999983

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.59  E-value=0.0018  Score=49.53  Aligned_cols=48  Identities=31%  Similarity=0.619  Sum_probs=38.9

Q ss_pred             EEEeec---CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.   .++|+.+..+  .+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         7 r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vn   59 (93)
T 2dkr_A            7 GVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVN   59 (93)
T ss_dssp             CEEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEET
T ss_pred             EEEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            345554   6789999654  34699999999999999996699999999983

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.56  E-value=0.0023  Score=51.67  Aligned_cols=55  Identities=31%  Similarity=0.564  Sum_probs=42.3

Q ss_pred             hhhccceEEEeecC----------CcceeEeecCC-------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           80 QEEKYEEYEVEIEQ----------PYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        80 ~~~~~~~~~v~l~k----------Plgl~~~~~~~-------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.-.....+|+|.|          ++|+.+..+.+       -+++|..|.+++.|+++|.+++||+|+.+-
T Consensus         7 ~~~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vn   78 (117)
T 1ujd_A            7 GHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWN   78 (117)
T ss_dssp             CCCSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEET
T ss_pred             CCCCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            33445556666663          47888865433       279999999999999999999999999983

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=96.55  E-value=0.0036  Score=51.39  Aligned_cols=50  Identities=18%  Similarity=0.365  Sum_probs=40.9

Q ss_pred             ceEEEeec---CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.   ..+|+.+..+.  +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus        18 ~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vn   72 (129)
T 2kpk_A           18 KFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN   72 (129)
T ss_dssp             EEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEET
T ss_pred             cEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            45667776   46888886543  3379999999999999999999999999983

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.55  E-value=0.0035  Score=50.19  Aligned_cols=51  Identities=27%  Similarity=0.497  Sum_probs=40.0

Q ss_pred             ccceEEEeecC----CcceeEeecC----CC-----ceEEEeeCCCCcccc-ccccccCcEeeeec
Q 019871           83 KYEEYEVEIEQ----PYGLKFAKGR----DG-----GTYIDAIAPGGSADK-TGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~k----Plgl~~~~~~----~g-----~v~v~~~~~~~~a~~-~~~i~~gD~v~~~s  134 (334)
                      ..+..+|.|.|    ++|+.+....    .|     .++|..|.+++.|++ +| +++||+|+.+-
T Consensus         8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~in   72 (114)
T 1uew_A            8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVN   72 (114)
T ss_dssp             CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEET
T ss_pred             cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEEC
Confidence            34667888864    6899995432    22     569999999999999 66 99999999984

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.54  E-value=0.0039  Score=59.25  Aligned_cols=54  Identities=13%  Similarity=0.039  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-----CChHHHHHHHHHHHHcCCCC
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-----NQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l-----G~~eeAl~~lekAIelgp~~  285 (334)
                      ...|...+++|+++||+..+ ..+|.-+|..|.++     |+.++|.++|++||+++|+.
T Consensus       179 l~~A~a~lerAleLDP~~~~-GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQE-GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHhCCCccc-CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999422 67999999999996     99999999999999999964

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.51  E-value=0.0016  Score=51.23  Aligned_cols=48  Identities=29%  Similarity=0.499  Sum_probs=39.6

Q ss_pred             eEEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.|.++  .++|+.+..+.+  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus         6 ~~~v~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~in   57 (103)
T 1v5l_A            6 SGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAID   57 (103)
T ss_dssp             CBCCEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEET
T ss_pred             EEEEEEcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            3555555  689999976654  379999999999999999 99999999983

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=96.50  E-value=0.0045  Score=47.68  Aligned_cols=47  Identities=26%  Similarity=0.523  Sum_probs=37.7

Q ss_pred             ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ....|+|.   .++|+.+.  .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus         8 ~~r~v~l~~~~~~~G~~l~--~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   57 (93)
T 2dls_A            8 VQRCVIIQKDQHGFGFTVS--GDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVN   57 (93)
T ss_dssp             CEEEEEEECSSSSCCEEEE--CSSSCEEEEECSSSTTTTTT-CCSSCEEEEET
T ss_pred             CCEEEEEEeCCCceeEEEe--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            34566665   35677773  35689999999999999999 99999999983

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=96.49  E-value=0.0033  Score=48.69  Aligned_cols=48  Identities=17%  Similarity=0.393  Sum_probs=38.0

Q ss_pred             eEEEeec----CCcceeEee-------cC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE----QPYGLKFAK-------GR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~-------~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+|+|.    .++|+.+..       +.  +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus         5 ~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~in   65 (96)
T 2ego_A            5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVN   65 (96)
T ss_dssp             EEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEET
T ss_pred             cEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            4667776    378888864       22  2389999999999999999 99999999983

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.47  E-value=0.0018  Score=50.01  Aligned_cols=48  Identities=23%  Similarity=0.553  Sum_probs=39.4

Q ss_pred             eEEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.+++.  .++|+.+..+.+  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus         7 ~~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   58 (94)
T 1vb7_A            7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAIN   58 (94)
T ss_dssp             CEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEET
T ss_pred             EEEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence            3555555  788999976543  489999999999999999 99999999983

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=96.46  E-value=0.001  Score=52.54  Aligned_cols=49  Identities=31%  Similarity=0.497  Sum_probs=38.7

Q ss_pred             eEEEeec----CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE----QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ...|+|.    .++|+.+.-+.  +.+++|..|.++|.|++++.+++||+|+.+-
T Consensus        10 ~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~In   64 (103)
T 2dc2_A           10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN   64 (103)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEET
T ss_pred             cEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEEC
Confidence            3566665    47899986543  2389999999999999974499999999984

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=96.46  E-value=0.00098  Score=53.89  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=35.1

Q ss_pred             CcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           94 PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        94 Plgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|+.+..+.+.  +++|..|.+++.|+++|.+++||+|+.+-
T Consensus        37 ~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~In   79 (114)
T 2gzv_A           37 LIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN   79 (114)
T ss_dssp             CCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             cEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence            389999765443  79999999999999999899999999983

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.45  E-value=0.0025  Score=50.70  Aligned_cols=49  Identities=29%  Similarity=0.583  Sum_probs=39.5

Q ss_pred             eEEEeec----CCcceeEeecC-----------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE----QPYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~~-----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+|+|.    .++|+.+..+.           +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus        10 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn   73 (111)
T 1uju_A           10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVN   73 (111)
T ss_dssp             SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBS
T ss_pred             cEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            3455554    46899996544           2379999999999999999999999999983

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=96.45  E-value=0.0084  Score=47.73  Aligned_cols=41  Identities=22%  Similarity=0.618  Sum_probs=35.7

Q ss_pred             CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+....  +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        27 ~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vn   69 (114)
T 1x5n_A           27 RGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVN   69 (114)
T ss_dssp             CCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEET
T ss_pred             CceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            67899996543  3589999999999999999 99999999984

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.39  E-value=0.0044  Score=49.80  Aligned_cols=52  Identities=31%  Similarity=0.610  Sum_probs=41.4

Q ss_pred             hhccceEEEeec----CCcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           81 EEKYEEYEVEIE----QPYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        81 ~~~~~~~~v~l~----kPlgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +...+.++|+|.    .++|+.+..+.        +.+++|..|.+++.|+ ++ +++||+|+.+-
T Consensus        10 ~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vn   73 (117)
T 2csj_A           10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVN   73 (117)
T ss_dssp             CEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEES
T ss_pred             cccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEEC
Confidence            345677888886    46888886653        3479999999999997 55 99999999983

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=96.38  E-value=0.0031  Score=47.73  Aligned_cols=48  Identities=31%  Similarity=0.526  Sum_probs=37.4

Q ss_pred             EEEeec----CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE----QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~----kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++|+|.    .++|+.+..+.  +.+++|..|.|+|.|++++.+++||+|+.+-
T Consensus         4 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vn   57 (87)
T 4e34_A            4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN   57 (87)
T ss_dssp             EEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEET
T ss_pred             EEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEEC
Confidence            456665    37888886542  3479999999999999953399999999984

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.35  E-value=0.0018  Score=50.69  Aligned_cols=52  Identities=27%  Similarity=0.497  Sum_probs=41.7

Q ss_pred             hhhccceEEEeecC---CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           80 QEEKYEEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        80 ~~~~~~~~~v~l~k---Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .....+++.|+|.+   .+|+.+..  +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        10 ~~~~~~~~~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-L~~GD~I~~vn   64 (100)
T 1whd_A           10 DPENGEKLQITIRRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLN   64 (100)
T ss_dssp             SCCCCEEEEEEEECCSSSSSCBCCC--SSSCBCCBCCTTSHHHHHT-CCSSCEEEEET
T ss_pred             CccccceEEEEEECCCCeeeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            34456778888874   46666633  4689999999999999999 99999999983

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=96.34  E-value=0.0042  Score=49.95  Aligned_cols=41  Identities=24%  Similarity=0.579  Sum_probs=35.2

Q ss_pred             cCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        92 ~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ....|+.+.. .++++.|..|.+|+.|+++| +++||+|+++-
T Consensus        27 ~~g~G~~l~~-~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~In   67 (101)
T 3qik_A           27 EEDYGFDIEE-KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSIN   67 (101)
T ss_dssp             SSSSSEEEEE-ETTEEEEEEECTTSHHHHHT-CCTTCBEEEET
T ss_pred             CCcccEEEEc-cCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            3667788755 46789999999999999999 99999999983

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.33  E-value=0.0056  Score=48.44  Aligned_cols=48  Identities=27%  Similarity=0.432  Sum_probs=39.2

Q ss_pred             EEEeec---CCcceeEeecCCC---ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~g---~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|.|.   .++|+.+.-+.+.   .++|..|.+++.|+++|.+++||+|+.+-
T Consensus         8 ~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vn   61 (103)
T 1ufx_A            8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN   61 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEET
T ss_pred             EEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEEC
Confidence            556666   4788998655543   35999999999999999999999999983

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=96.31  E-value=0.0038  Score=48.79  Aligned_cols=40  Identities=33%  Similarity=0.743  Sum_probs=34.0

Q ss_pred             CcceeEeec--------------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           94 PYGLKFAKG--------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        94 Plgl~~~~~--------------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++|+.+.-+              ...+++|..|.+++.|+++| +++||+|+.+-
T Consensus        20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~in   73 (104)
T 3sfj_A           20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVN   73 (104)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            488888622              24589999999999999999 99999999983

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=96.29  E-value=0.0042  Score=47.91  Aligned_cols=41  Identities=32%  Similarity=0.662  Sum_probs=34.6

Q ss_pred             CCcceeEeecC--C--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGR--D--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~--~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+....  +  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus        14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   58 (96)
T 2v90_A           14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVA   58 (96)
T ss_dssp             TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEET
T ss_pred             CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            57888886532  2  279999999999999999 99999999984

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=96.28  E-value=0.0045  Score=54.02  Aligned_cols=50  Identities=18%  Similarity=0.416  Sum_probs=41.6

Q ss_pred             ceEEEeec---CCcceeEeecCC----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++++|+|.   .++|+.+..+.+    .+++|..|.++|-|+++|.+++||+|+.+-
T Consensus        18 ~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vn   74 (206)
T 3r0h_A           18 KKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDIN   74 (206)
T ss_dssp             SCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             CEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence            45667775   689999965433    379999999999999998899999999984

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=96.22  E-value=0.0042  Score=49.26  Aligned_cols=42  Identities=40%  Similarity=0.718  Sum_probs=36.3

Q ss_pred             CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+.-+.       +++++|..|.++|.|+++|.+++||+|+.+-
T Consensus        13 ~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vn   61 (106)
T 4amh_A           13 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN   61 (106)
T ss_dssp             CCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             CccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence            68899986542       3489999999999999999999999999984

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=96.21  E-value=0.003  Score=49.63  Aligned_cols=41  Identities=34%  Similarity=0.580  Sum_probs=34.9

Q ss_pred             CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+.... .++++|..|.|++.|+++| +++||+|+.+-
T Consensus        13 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   54 (106)
T 3ngh_A           13 QNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRIN   54 (106)
T ss_dssp             CCCCCEEECCTTCCSCEEECCCTTSHHHHTT-CCTTCEEEEET
T ss_pred             CeeCEEEEEEeCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEEC
Confidence            46888886553 3489999999999999999 99999999983

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=96.19  E-value=0.01  Score=47.38  Aligned_cols=47  Identities=32%  Similarity=0.528  Sum_probs=38.0

Q ss_pred             EEEeec----CCcceeEeec-CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE----QPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~----kPlgl~~~~~-~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      |.+.|.    +.+|+.+... ...+++|..|.+++.|+++| +++||+|+.+-
T Consensus        15 ~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in   66 (114)
T 2edz_A           15 RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRIN   66 (114)
T ss_dssp             EEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGT-CCTTCEEEEES
T ss_pred             EEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            555443    5788888543 34589999999999999999 99999999984

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=96.18  E-value=0.0049  Score=46.92  Aligned_cols=38  Identities=32%  Similarity=0.571  Sum_probs=33.5

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +++|+.+.    ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus        15 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~in   52 (92)
T 3cyy_A           15 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKIN   52 (92)
T ss_dssp             SCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEET
T ss_pred             CCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence            46788774    689999999999999998899999999983

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=96.17  E-value=0.0034  Score=47.09  Aligned_cols=45  Identities=27%  Similarity=0.544  Sum_probs=35.4

Q ss_pred             EEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|+|.   ..+|+.+.  .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus         4 r~v~l~~~~~g~G~~~~--~~~~~~V~~V~~~spA~~aG-l~~GD~I~~in   51 (83)
T 2kv8_A            4 RSVEVARGRAGYGFTLS--GQAPCVLSCVMRGSPADFVG-LRAGDQILAVN   51 (83)
T ss_dssp             EEEEECCCSSCCSCBCC--CSSSCBCCBCCTTSTTTTTT-CCTTCEEEEET
T ss_pred             EEEEEEeCCCcccEEEE--cCCCeEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            566776   33555553  24479999999999999999 99999999983

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=96.17  E-value=0.015  Score=46.88  Aligned_cols=45  Identities=27%  Similarity=0.461  Sum_probs=36.5

Q ss_pred             eecCCcceeEeecC---CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           90 EIEQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        90 ~l~kPlgl~~~~~~---~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .-...+|+.+.-+.   .|.++|..|.++|.|+++|.+++||+|+.+-
T Consensus        25 ~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~In   72 (118)
T 1v6b_A           25 KKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN   72 (118)
T ss_dssp             ESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEES
T ss_pred             CCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            33467888886543   3679999999999999995599999999983

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=96.16  E-value=0.0091  Score=45.21  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=35.1

Q ss_pred             ceEEEeecC---CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k---Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.|   .+|+.+.... +++++|..+ +++.|+ +| +++||+|+.+-
T Consensus         3 ~~~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vn   53 (88)
T 3bpu_A            3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVN   53 (88)
T ss_dssp             EEEEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC--CC-TT-CCTTCEEEEET
T ss_pred             cEEEEEEEcCCCceeEEEEecCCCCcEEEEEe-cCChhH-hC-CCCCCEEEEEC
Confidence            456777764   5888886653 358899887 899998 76 99999999984

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=96.15  E-value=0.0034  Score=58.50  Aligned_cols=82  Identities=20%  Similarity=0.333  Sum_probs=54.8

Q ss_pred             ccceEEEeecC----CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           83 KYEEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        83 ~~~~~~v~l~k----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..+...|+|.|    ++|+.+..+.  +.++||..|.+||.|++++.+++||+|+.|-   |..+- .....++...++.
T Consensus        75 ~~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VN---G~~v~-~~t~~e~v~~l~~  150 (263)
T 1z87_A           75 LLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVN---GEDLS-SATHDEAVQALKK  150 (263)
T ss_dssp             SCSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEES---SCBCT-TSCHHHHHHHHHH
T ss_pred             CCccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEEC---CEECC-CcCHHHHHHHHhc
Confidence            34568888875    6889997654  3589999999999999954499999999983   22221 1123355555555


Q ss_pred             hhhhHHHHhhcc
Q 019871          157 RVGPLLMKMQKR  168 (334)
Q Consensus       157 R~G~V~lkLek~  168 (334)
                      --+.|.+.+.+.
T Consensus       151 ~g~~V~L~V~R~  162 (263)
T 1z87_A          151 TGKEVVLEVKYM  162 (263)
T ss_dssp             CCSCCCEEEECC
T ss_pred             CCCeEEEEEEeC
Confidence            444455554443

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=96.10  E-value=0.008  Score=58.81  Aligned_cols=41  Identities=29%  Similarity=0.615  Sum_probs=38.2

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+..+++++|+|..|.+||.|+++| +++||+|+.+-
T Consensus        19 ~~lG~~i~gg~~~gi~V~~V~~gspA~~aG-L~~GD~Il~Vn   59 (391)
T 3tsz_A           19 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVN   59 (391)
T ss_dssp             SSCCEEEEEETTTEEEEEEECTTCHHHHTT-CCTTEEEEEET
T ss_pred             CceeEEEEecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            589999977788999999999999999999 99999999984

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=96.05  E-value=0.005  Score=47.13  Aligned_cols=44  Identities=27%  Similarity=0.542  Sum_probs=34.7

Q ss_pred             EEeecC---CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        88 ~v~l~k---Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|+|.|   .+|+.+.  .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus         6 ~v~l~~~~~g~G~~l~--~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vn   52 (91)
T 2f5y_A            6 QITIPRGKDGFGFTIC--CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLN   52 (91)
T ss_dssp             EEEEECBTTBTSEEEE--CSSSCEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             EEEEEeCCCCccEEEe--cCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            455553   3666663  34569999999999999999 99999999984

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.04  E-value=0.0066  Score=49.51  Aligned_cols=47  Identities=30%  Similarity=0.664  Sum_probs=37.9

Q ss_pred             EEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.|++.  .++|+.+....+  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus        24 v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vn   74 (128)
T 1uf1_A           24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVN   74 (128)
T ss_dssp             EEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEET
T ss_pred             EEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence            444444  579998866432  389999999999999999 99999999983

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.03  E-value=0.0038  Score=49.03  Aligned_cols=47  Identities=21%  Similarity=0.434  Sum_probs=38.2

Q ss_pred             EEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.   .++|+.+.... +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        10 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vn   60 (106)
T 2eei_A           10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVN   60 (106)
T ss_dssp             EEEEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHT-CCSSEEEEEET
T ss_pred             EEEEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            445555   57889885433 3589999999999999999 99999999983

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=96.03  E-value=0.012  Score=47.70  Aligned_cols=47  Identities=17%  Similarity=0.527  Sum_probs=38.3

Q ss_pred             EEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.   ..+|+.+..+. .++++|..|.+++.|+++| +++||+|+.+-
T Consensus        11 r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~in   61 (128)
T 2kjd_A           11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVN   61 (128)
T ss_dssp             EEEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             EEEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            445554   56888886554 3599999999999999999 99999999984

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.00  E-value=0.022  Score=48.84  Aligned_cols=93  Identities=19%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC---ChHHHHHHHHHHHHcC-CCCHHHHhcChhhHHHhcChHHH
Q 019871          230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAG-YEDFKRVRTDPDLENLRASEEFD  305 (334)
Q Consensus       230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG---~~eeAl~~lekAIelg-p~~~~~i~~Dpdl~~Lr~dp~F~  305 (334)
                      ....+.+.|++.++.+|.+   ..+.|+.|.|+.+.+   ++++|+..|+..++.+ |.+....+..-.+...+ ..+|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~---~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~   88 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHH
T ss_pred             HHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHH
Confidence            3456778888898888876   689999999999999   6779999999999998 64444455555666544 57899


Q ss_pred             HHHHHHHHhh----hchhHHHHHHH
Q 019871          306 VLLKRFDESF----INENAINAIKS  326 (334)
Q Consensus       306 ~lL~~~~e~~----~~~~ai~~~k~  326 (334)
                      ++++.++..+    .|.+|.+..+.
T Consensus        89 ~A~~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           89 KALKYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            9999888888    45577766443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.98  E-value=0.018  Score=50.31  Aligned_cols=60  Identities=25%  Similarity=0.384  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC--------------------CcchHHHHHHHHHHHHCCChHHHHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSK---PTP--------------------EESSVASYNVACCYSKLNQVKAGLS  273 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeld---P~~--------------------~e~~~a~yNlA~ay~~lG~~eeAl~  273 (334)
                      ..+.+|+++|..++|..|+..|++||.+.   +..                    .| ...-|.+|.||.+++++++||.
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e-~Elkykia~C~~~l~~~~~Ai~  143 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSE-IEVKYKLAECYTVLKQDKDAIA  143 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccch-HHHHHHHHHHHHHHCCHHHHHH
Confidence            34599999999999999999999997542   111                    11 2577999999999999999999


Q ss_pred             HHHH
Q 019871          274 ALED  277 (334)
Q Consensus       274 ~lek  277 (334)
                      .|+.
T Consensus       144 ~Le~  147 (167)
T 3ffl_A          144 ILDG  147 (167)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=95.96  E-value=0.0063  Score=51.74  Aligned_cols=46  Identities=26%  Similarity=0.507  Sum_probs=39.4

Q ss_pred             EEEeecC----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~k----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|.|.|    .+|+.+.. .+++++|..|.|++.|+++| +++||+|+.+-
T Consensus         6 r~v~l~k~~~~~lG~~~~~-~~~g~~V~~v~~~spA~~aG-l~~GD~I~~in   55 (166)
T 1w9e_A            6 REVILCKDQDGKIGLRLKS-IDNGIFVQLVQANSPASLVG-LRFGDQVLQIN   55 (166)
T ss_dssp             EEEEEECCTTSCCSEEEEE-ETTEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEEEeCCCCcEeEEEEe-CCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            5566665    68999965 46789999999999999999 99999999983

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=95.95  E-value=0.0097  Score=47.29  Aligned_cols=45  Identities=22%  Similarity=0.342  Sum_probs=34.8

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      .++++|..|.+++.|+++| +++||+|+.+-      ..++.++..+..++.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~in------g~~v~~~~~~~~~l~   78 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIG------EQMVQNAEDVYEAVR   78 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEET------TEECCSHHHHHHHHH
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHh
Confidence            5789999999999999999 99999999983      234445555555444

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=95.89  E-value=0.0077  Score=47.34  Aligned_cols=50  Identities=22%  Similarity=0.368  Sum_probs=39.9

Q ss_pred             ceEEEeec----CCcceeEeecCC--CceEEEeeCCCCccccccc-cccCcEeeeec
Q 019871           85 EEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGM-FQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~-i~~gD~v~~~s  134 (334)
                      ....|.|.    .++|+.+.-+.+  .+++|..|.+++.|+++|. +++||+|+.+-
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~in   73 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLIN   73 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEET
T ss_pred             CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEEC
Confidence            34666665    378888865433  3799999999999999994 99999999983

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=95.85  E-value=0.012  Score=45.84  Aligned_cols=46  Identities=22%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.+.|+|.   ..+|+.+... ..+++|..|.++  |+++| +++||+|+.+-
T Consensus        10 ~~~~v~l~~~~~g~G~~i~~~-~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vn   58 (96)
T 1ujv_A           10 ELMTLTIVKGAQGFGFTIADS-PTGQRVKQILDI--QGCPG-LCEGDLIVEIN   58 (96)
T ss_dssp             CCEEEEEECCSSSSSEEEEEE-TTEEEEEEESCG--GGSTT-CCSSCEEEEET
T ss_pred             eEEEEEEEeCCCceeEEEEcC-CCCEEEEEEecc--cccCC-CCCCCEEEEEC
Confidence            56788887   4688888543 346999999994  77777 99999999983

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=95.80  E-value=0.0096  Score=51.87  Aligned_cols=50  Identities=26%  Similarity=0.506  Sum_probs=41.7

Q ss_pred             ceEEEeecC----CcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.|    .+|+.+..+.      +.+++|..|.|++-|+++|.+++||+|+.+-
T Consensus         6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vn   65 (196)
T 1p1d_A            6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN   65 (196)
T ss_dssp             EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEET
T ss_pred             EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence            567777763    5889997752      3479999999999999999899999999983

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=95.79  E-value=0.0038  Score=54.47  Aligned_cols=49  Identities=20%  Similarity=0.378  Sum_probs=39.9

Q ss_pred             ceEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..++|++.    ..+|+.+.. .+.+++|..|.+||.|+++|.+++||+|+.+-
T Consensus       113 ~~~~v~l~~~~~~~lG~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VN  165 (206)
T 3r0h_A          113 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN  165 (206)
T ss_dssp             EEEEEEEECCTTCCCCEEEEE-CSSCEEEEEECTTSCHHHHHHCCTTCEEEEET
T ss_pred             cEEEEEEecCCCCccCeEEEc-CCceEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            35666664    357888864 45689999999999999998899999999984

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=95.77  E-value=0.0046  Score=47.31  Aligned_cols=47  Identities=23%  Similarity=0.468  Sum_probs=36.8

Q ss_pred             EEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|+|.   .++|+.+.... ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus         5 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   55 (91)
T 2vsp_A            5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVN   55 (91)
T ss_dssp             EEEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            455665   35788885533 3589999999999999999 99999999983

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.76  E-value=0.0064  Score=49.32  Aligned_cols=52  Identities=25%  Similarity=0.500  Sum_probs=41.3

Q ss_pred             hccceEEEeecC------CcceeEeec-CC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           82 EKYEEYEVEIEQ------PYGLKFAKG-RD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        82 ~~~~~~~v~l~k------Plgl~~~~~-~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.+.++|.|.|      ++|+.+... .+  .+++|..|.+++.|+++| +++||+|+.+-
T Consensus        12 ~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~In   72 (114)
T 2d8i_A           12 CPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEIN   72 (114)
T ss_dssp             SCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEES
T ss_pred             ccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEEC
Confidence            344667788863      588888643 22  489999999999999999 99999999983

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=95.75  E-value=0.009  Score=49.52  Aligned_cols=65  Identities=14%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccc--cchhhHHHHHHH
Q 019871           85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPA--AEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~--~~~~~v~sai~~  156 (334)
                      ..++++|.   .-+|+.+.. .+.+++|..|.++|.|+++|.+++||+|+.+-   |   .++  .++..+..+++.
T Consensus        27 ~~~~~~l~k~~~glG~~i~~-~~~~v~V~~V~~gspA~~aG~L~~GD~Il~Vn---G---~~v~~~s~~d~~~~l~~   96 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQ-NGPYLQISHLINKGAAASDGILQPGDVLISVG---H---ANVLGYTLREFLKLLQN   96 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEE-ETTEEEECCCCTTSSGGGCSSSCTTCBEEEES---S---SCCTTCCHHHHHHHHTS
T ss_pred             ceEEEEEecCCceEeEEEEc-CCCcEEEEEECCCCHHHHcCCCCCCCEEEEEC---C---EEcCCCCHHHHHHHHhc
Confidence            44666665   345666643 46789999999999999999999999999983   2   233  244455565554

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=95.73  E-value=0.007  Score=52.95  Aligned_cols=49  Identities=33%  Similarity=0.598  Sum_probs=39.7

Q ss_pred             ceEEEeec----CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE----QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +..+|+|.    .++|+.+..+  .+++++|..|.+||.|+++| +++||+|+.+-
T Consensus        84 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vn  138 (192)
T 3k1r_A           84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRIN  138 (192)
T ss_dssp             SCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEET
T ss_pred             ceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            34567776    4688888544  24589999999999999999 99999999983

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=95.72  E-value=0.0088  Score=60.05  Aligned_cols=46  Identities=28%  Similarity=0.572  Sum_probs=40.5

Q ss_pred             EEeec--CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           88 EVEIE--QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        88 ~v~l~--kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|.+.  .++|+.+.-+++++|||..|.+||.|+++| +++||+|+.|-
T Consensus         4 ~V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VN   51 (468)
T 3shw_A            4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVN   51 (468)
T ss_dssp             EEEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTT-CCTTEEEEEET
T ss_pred             EEEEecCCccceEEEccCcCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            35555  689999977788999999999999999999 99999999984

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.70  E-value=0.014  Score=47.52  Aligned_cols=57  Identities=14%  Similarity=0.257  Sum_probs=40.4

Q ss_pred             CcceeEeecC-----CCceEEEeeCC--CCccccccccccCcEeeeeccccccccccccch--hhHHHHHHHh
Q 019871           94 PYGLKFAKGR-----DGGTYIDAIAP--GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQR  157 (334)
Q Consensus        94 Plgl~~~~~~-----~g~v~v~~~~~--~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~--~~v~sai~~R  157 (334)
                      ++|+.+....     ..+|+|..|.+  ++.|+++| +++||+|+.+-   |   .++.++  ..+..++...
T Consensus        28 ~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vn---g---~~v~~~~~~dl~~~l~~~   93 (118)
T 2yub_A           28 RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEIN---G---TPVRTLRVEEVEDAIKQT   93 (118)
T ss_dssp             SCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEES---S---SBTTTSCHHHHHHHHHCC
T ss_pred             CceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEEC---C---EECCCcCHHHHHHHHHhC
Confidence            4577775432     35899999999  99999998 99999999983   2   334444  4555555443

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=95.35  E-value=0.022  Score=43.65  Aligned_cols=61  Identities=13%  Similarity=0.227  Sum_probs=41.5

Q ss_pred             ceEEEeecC----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      +...|+|.|    ++|+.+.   +|  +|..|.+|+.|+|+| +++||.|+.|-    .+-....+..++.+.++
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~---~g--~I~~v~~gspA~~aG-l~~GD~Il~VN----G~~v~~~~~~evv~llr   68 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEIN----GQNVIGLKDSQIADILS   68 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSEEEEEET----TEECTTCCHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCeEEEEE---CC--EEEEecCCCHHHHcC-CCCCCEEEEEC----CEEcCCCCHHHHHHHHh
Confidence            346788875    5777772   33  478999999999999 88999999983    22111233445555555

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=95.32  E-value=0.016  Score=46.69  Aligned_cols=44  Identities=16%  Similarity=0.297  Sum_probs=34.8

Q ss_pred             EEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           88 EVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        88 ~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|.|.   .++|+.+  ..+.+++|..|.|++.|+++| +++||+|+.+-
T Consensus        26 ~v~l~k~~~~~G~~l--~~~~~v~V~~V~~gspA~~AG-L~~GD~Il~Vn   72 (109)
T 2vsv_A           26 SIRFTAEEGDLGFTL--RGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQ   72 (109)
T ss_dssp             EEEECCGGGCCCEEE--ESSSSCEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEEeCCCceeEEE--eCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            45555   4566665  234579999999999999999 99999999983

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=95.30  E-value=0.007  Score=51.88  Aligned_cols=49  Identities=37%  Similarity=0.663  Sum_probs=38.5

Q ss_pred             eEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|++.   .++|+.+....       +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus       101 ~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vn  159 (196)
T 3gsl_A          101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN  159 (196)
T ss_dssp             EEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             cEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence            3455554   56888885432       3479999999999999999999999999983

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=95.26  E-value=0.018  Score=50.19  Aligned_cols=50  Identities=28%  Similarity=0.494  Sum_probs=40.5

Q ss_pred             ceEEEeec----CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE----QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+.|+|.    .++|+.+..+  .+++++|..|.+++.|++++.+++||+|+.+-
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vn   62 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVN   62 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEET
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence            44667775    5899999765  34589999999999999994499999999983

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=95.21  E-value=0.0098  Score=46.05  Aligned_cols=41  Identities=22%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             CCcceeEeecC----CC-----ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGR----DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~----~g-----~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+....    ++     +++|..|.+++.|+++| +++||+|+.+-
T Consensus        13 ~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in   62 (99)
T 3khf_A           13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHIN   62 (99)
T ss_dssp             CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            57788875432    11     56899999999999999 99999999983

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=94.13  E-value=0.0036  Score=50.47  Aligned_cols=41  Identities=34%  Similarity=0.639  Sum_probs=33.1

Q ss_pred             CCcceeEeecC--CCceEEEeeCCCCcccc-ccccccCcEeeeec
Q 019871           93 QPYGLKFAKGR--DGGTYIDAIAPGGSADK-TGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~--~g~v~v~~~~~~~~a~~-~~~i~~gD~v~~~s  134 (334)
                      .++|+.+..+.  +.+++|..|.++|.|++ +| +++||+|+.+-
T Consensus        39 ~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~IN   82 (112)
T 2lob_A           39 EGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVN   82 (112)
Confidence            35778775542  24799999999999999 56 99999999983

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=94.89  E-value=0.016  Score=60.82  Aligned_cols=50  Identities=30%  Similarity=0.575  Sum_probs=41.2

Q ss_pred             ceEEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +...|+|.   .++|+.+..++ ..+|+|..|.+||.|+++|.+++||+|+.|-
T Consensus       307 ~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VN  360 (721)
T 2xkx_A          307 EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVN  360 (721)
T ss_pred             ceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEEC
Confidence            45566666   46899886554 3599999999999999999999999999983

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=94.77  E-value=0.028  Score=43.31  Aligned_cols=36  Identities=25%  Similarity=0.589  Sum_probs=30.3

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+.   .|  +|..|.++|.|+++| +++||+|+.+-
T Consensus        24 ~~lG~~~~---~G--~V~~V~~~spA~~aG-L~~GD~Il~In   59 (90)
T 1y7n_A           24 YQLGFSVQ---NG--IICSLMRGGIAERGG-VRVGHRIIEIN   59 (90)
T ss_dssp             SCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSCEEEEET
T ss_pred             cccCeEec---CC--EEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            45777662   24  999999999999999 99999999983

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=94.75  E-value=0.054  Score=47.01  Aligned_cols=49  Identities=27%  Similarity=0.489  Sum_probs=39.8

Q ss_pred             eEEEeec----CCcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE----QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+.++++    ..+|+.+....    ..+++|..|.+++.|+++|.+++||+|+.+-
T Consensus       108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vn  164 (196)
T 1p1d_A          108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAID  164 (196)
T ss_dssp             CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEET
T ss_pred             cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEEC
Confidence            3667776    35799886532    4589999999999999998899999999983

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=94.66  E-value=0.049  Score=47.33  Aligned_cols=66  Identities=24%  Similarity=0.455  Sum_probs=47.5

Q ss_pred             ceEEEeec---CCcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeecccccccccccc--chhhHHHH
Q 019871           85 EEYEVEIE---QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYT  153 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~--~~~~v~sa  153 (334)
                      ..+.|++.   .++|+.+..+.      ..+++|..|.+++.|+++|.+++||+|+.+-      ..++.  ++..+..+
T Consensus       106 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~in------g~~v~~~~~~~~~~~  179 (200)
T 2qt5_A          106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD------GIRLLGTTHAEAMSI  179 (200)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEET------TEECTTCCHHHHHHH
T ss_pred             eEEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC------CEECCCCCHHHHHHH
Confidence            44666654   56898886543      3589999999999999998899999999983      23344  44455555


Q ss_pred             HHH
Q 019871          154 IRQ  156 (334)
Q Consensus       154 i~~  156 (334)
                      +..
T Consensus       180 l~~  182 (200)
T 2qt5_A          180 LKQ  182 (200)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            544

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=94.63  E-value=0.038  Score=47.64  Aligned_cols=69  Identities=20%  Similarity=0.421  Sum_probs=43.7

Q ss_pred             CCcceeEeecC----------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHH
Q 019871           93 QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (334)
Q Consensus        93 kPlgl~~~~~~----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~  162 (334)
                      +.+|+.+.-+.          +.+++|..|.+++.|++ | +++||+|+.+-   |..+-... ...+..+++...+.+.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vn---g~~v~~~~-~~~~~~~~~~~~~~v~   75 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQAN---GYSFINIE-HGQAVSLLKTFQNTVE   75 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEET---TEECTTCC-HHHHHHHHHHCCSEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEEC---CEECCCCC-HHHHHHHHHcCCCeEE
Confidence            35677775443          45999999999999999 7 99999999983   22221111 2244444444334444


Q ss_pred             HHhhc
Q 019871          163 MKMQK  167 (334)
Q Consensus       163 lkLek  167 (334)
                      +.+.|
T Consensus        76 l~v~r   80 (195)
T 2qbw_A           76 LIIVR   80 (195)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.62  E-value=0.019  Score=44.48  Aligned_cols=46  Identities=26%  Similarity=0.431  Sum_probs=36.0

Q ss_pred             ceEEEeecC-----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ-----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k-----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..++|+|.|     ++|+.+.  .+.+++|..|.+++.|+ +| +++||+|+.+-
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~--~~~~~~V~~V~~~spA~-ag-L~~GD~Il~in   58 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHIS--ESLPLTVVAVTAGGSAH-GK-LFPGDQILQMN   58 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCC--SSSSCBCCCBCSSSSST-TT-SCTTCBEEEES
T ss_pred             ccEEEEEEECCCCCcccEEEe--cCCCeEEEEECCCCchh-hC-CCCCCEEEEEC
Confidence            457788874     4566663  25689999999999996 66 99999999983

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=94.58  E-value=0.012  Score=57.28  Aligned_cols=50  Identities=20%  Similarity=0.460  Sum_probs=39.9

Q ss_pred             ceEEEeecC----CcceeEeecCCC----ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~g----~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.-+|.|.|    ++|+.+....+|    +++|..|.|||.|+++|.+++||+|+.+-
T Consensus       204 ~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~Vn  261 (388)
T 3suz_A          204 NCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSIN  261 (388)
T ss_dssp             CCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEET
T ss_pred             cceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEEC
Confidence            344677764    699999775555    69999999999999999999999999984

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=94.47  E-value=0.031  Score=44.80  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|+.+.  .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus        26 ~~~G~~l~--~~~~v~V~~V~~~spA~~aG-L~~GD~Il~In   64 (111)
T 1vae_A           26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQ   64 (111)
T ss_dssp             SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEET
T ss_pred             CcccEEEe--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence            45677662  24579999999999999999 99999999983

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=94.37  E-value=0.038  Score=57.96  Aligned_cols=52  Identities=33%  Similarity=0.585  Sum_probs=43.0

Q ss_pred             ccceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           83 KYEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        83 ~~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++.++|+|.   .++|+.+.-+.       +.++||..|.+||-|+++|.+++||+|+.|-
T Consensus        57 ~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vn  118 (721)
T 2xkx_A           57 EMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN  118 (721)
T ss_pred             CceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEEC
Confidence            3456788887   57888886443       4589999999999999999999999999984

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=94.35  E-value=0.046  Score=49.22  Aligned_cols=47  Identities=17%  Similarity=0.527  Sum_probs=37.2

Q ss_pred             EEEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      -.|+|.   ..+|+.+..+.+ ++++|..|.+|+.|+++| |++||+|+.|-
T Consensus        11 r~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VN   61 (216)
T 2krg_A           11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVN   61 (216)
T ss_dssp             EEEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHT-CCTTCBCCEET
T ss_pred             EEEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            445555   457788754432 389999999999999999 99999999983

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=94.20  E-value=0.089  Score=43.37  Aligned_cols=45  Identities=9%  Similarity=0.037  Sum_probs=33.6

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..+++|..|.+++.|+ +| +++||+|+.+-      ..++.++..+..++..
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~in------G~~v~~~~~l~~~l~~  100 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVD------DKEIASSTDLQSALYN  100 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEET------TEECCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence            4689999999999999 88 99999999983      2334444445554443

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=94.02  E-value=0.087  Score=41.02  Aligned_cols=46  Identities=13%  Similarity=0.096  Sum_probs=34.3

Q ss_pred             CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       103 ~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ...||+|..|.+++.|++ | +++||+|+.+-      ..++.++..+..++..
T Consensus         5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~In------g~~v~~~~dl~~~l~~   50 (100)
T 3i18_A            5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEID------GNAFKSSQEFIDYIHS   50 (100)
T ss_dssp             CCCCEEEEEECTTSGGGG-T-CCTTCEEEEET------TBCCSSHHHHHHHHHT
T ss_pred             eCCCEEEEEeCCCCchHH-C-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence            457999999999999995 6 99999999983      2344555555555553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.1  Score=55.33  Aligned_cols=56  Identities=21%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      -.+.-+...|+|+.|+.+-.+|+..-|..   -..||.+|-||..+|+++.||-.|.-+
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDS---FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchh---hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44666778999999999999999999997   579999999999999999999998877

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=93.07  E-value=0.1  Score=40.25  Aligned_cols=45  Identities=20%  Similarity=0.355  Sum_probs=33.5

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..+++|..|.+++.|++ | +++||+|+.+-      ..++.++..+..++..
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~In------G~~v~~~~~l~~~l~~   48 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAID------GQPINTSEQIVSYVRE   48 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEET------TBCCCCHHHHHHHHHH
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence            45799999999999998 7 99999999983      2334445555555544

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=92.96  E-value=0.13  Score=48.21  Aligned_cols=55  Identities=24%  Similarity=0.366  Sum_probs=39.9

Q ss_pred             cceeEeec-----------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        95 lgl~~~~~-----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      +||.+..-           ...+++|..|.+++.|+++| +++||+|+.+-   |   -++.++..+..++..
T Consensus       223 lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in---g---~~v~~~~~l~~~l~~  288 (318)
T 1te0_A          223 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVD---N---KPAISALETMDQVAE  288 (318)
T ss_dssp             CCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTC-CCTTCCEEEET---T---EECCCHHHHHHHHHT
T ss_pred             ceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCC-CCCCCEEEEEC---C---EEcCCHHHHHHHHHh
Confidence            67777541           24689999999999999999 99999999983   2   234444445554443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.93  E-value=2.1  Score=42.56  Aligned_cols=70  Identities=4%  Similarity=-0.084  Sum_probs=57.8

Q ss_pred             hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGS--KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALel--dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      +.|+....-.+-..+.+.|++++|++.|++..+.  .|+    ...|..+=.+|.+.|++++|++.|++..+.|..
T Consensus       101 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~  172 (501)
T 4g26_A          101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV  172 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4465555557778899999999999999998854  566    468888888999999999999999999988754

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=92.45  E-value=0.18  Score=47.32  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=40.6

Q ss_pred             cceeEeec-CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871           95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus        95 lgl~~~~~-~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      +|+.+... ...+++|..|.+++.|+++| +++||+|+.+-      .-++.++..+...+.
T Consensus       231 lGi~~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~in------g~~v~~~~~l~~~l~  285 (324)
T 1y8t_A          231 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVD------DRPINSADALVAAVR  285 (324)
T ss_dssp             CCEEEESCSSSSSEEEEEECTTSTTTTTT-CCTTCEEEEET------TEECCSHHHHHHHHH
T ss_pred             cceEeeeccCCCceEEEEECCCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHH
Confidence            78888543 35689999999999999999 99999999983      233444555555454

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=92.35  E-value=0.4  Score=49.98  Aligned_cols=76  Identities=7%  Similarity=-0.021  Sum_probs=66.6

Q ss_pred             HHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          203 QNYMKKKEQKERREQDL-REGLQLYRTGKYEVAR-EKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       203 ~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl-~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      ..|.+++...|..+..+ ..+.-+...|+.++|+ ..|++|+...|.+   ...|...|......|++++|.+.|+++++
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---AVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            56888888888877765 6666677889999998 9999999999987   57899999999999999999999999998


Q ss_pred             c
Q 019871          281 A  281 (334)
Q Consensus       281 l  281 (334)
                      .
T Consensus       407 ~  407 (679)
T 4e6h_A          407 R  407 (679)
T ss_dssp             H
T ss_pred             H
Confidence            6

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=92.26  E-value=0.066  Score=55.15  Aligned_cols=39  Identities=26%  Similarity=0.435  Sum_probs=34.3

Q ss_pred             CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        94 Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      -+|+.+..+ .|+|.|..|.++|.|+++| |++||+|+++-
T Consensus       486 ~lG~~~~~~-~~gv~V~~V~~~spA~~AG-L~~GD~I~aIn  524 (597)
T 4fgm_A          486 NFGAKYKAS-PQGLDVLNVYHDESAYHAG-LSAGDKIIAID  524 (597)
T ss_dssp             CCSEEEEEE-TTEEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             ccceEEecc-CCeEEEEEeCCCChHHHCC-CCCCCEEEEEC
Confidence            488888654 5689999999999999999 99999999983

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.21  E-value=0.03  Score=45.49  Aligned_cols=29  Identities=21%  Similarity=0.564  Sum_probs=27.0

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeeec
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+++|..|.+++.|+++| +++||+|+.+-
T Consensus        61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~in   89 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVN   89 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHT-CCSSCCCCEET
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            569999999999999999 99999999983

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=92.07  E-value=0.81  Score=47.66  Aligned_cols=128  Identities=17%  Similarity=0.064  Sum_probs=85.8

Q ss_pred             HHHHHHHHhh-ccC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          202 MQNYMKKKEQ-KER-REQDLREGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       202 ~~~y~~~iel-~~~-~~~~~nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      ..-+.++++. .+. .......+..-++.+ +++.|...|+++++..|++   +..|...+.....+|+.+.|-..|++|
T Consensus       454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~---~~~w~~y~~fe~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD---GEYINKYLDFLIYVNEESQVKSLFESS  530 (679)
T ss_dssp             HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3445555554 222 222234455455554 5999999999999999998   456666677777899999999999999


Q ss_pred             HHcCCC--CHH-HHhcChhhHHHhc-ChHHHHHHHHHHHhhhchhHHHHHHHhhcccC
Q 019871          279 LLAGYE--DFK-RVRTDPDLENLRA-SEEFDVLLKRFDESFINENAINAIKSLFGLLD  332 (334)
Q Consensus       279 Ielgp~--~~~-~i~~Dpdl~~Lr~-dp~F~~lL~~~~e~~~~~~ai~~~k~~~~~~~  332 (334)
                      +...|+  ... ....=-.|+.-.. ......+.+++.+.+-.+.-++.+.+=|++++
T Consensus       531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~~  588 (679)
T 4e6h_A          531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLD  588 (679)
T ss_dssp             TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBTT
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCc
Confidence            999883  222 1111122332222 34567777888888888888888888887664

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=92.05  E-value=0.14  Score=40.42  Aligned_cols=30  Identities=27%  Similarity=0.652  Sum_probs=27.6

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~in   63 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVN   63 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEEC
Confidence            4689999999999999998 99999999984

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=91.92  E-value=0.12  Score=40.07  Aligned_cols=45  Identities=11%  Similarity=0.197  Sum_probs=33.9

Q ss_pred             eEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh
Q 019871          107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (334)
Q Consensus       107 v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~  158 (334)
                      ..|..|.+++.|+++| +++||+|+.+-      ..++.++..+..++....
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~in------g~~v~~~~d~~~~l~~~~   48 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVD------GIETPDWDAVRLQLVDKI   48 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEET------TEECSSHHHHHHHHHHTT
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHHhc
Confidence            4688999999999999 99999999983      234455555666665544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.74  E-value=0.39  Score=39.79  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      .-.|.+|..+|++|+|++|+.+++..|+.+|++
T Consensus        75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            445799999999999999999999999999998

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=91.63  E-value=0.089  Score=40.59  Aligned_cols=43  Identities=21%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      |++|..|.+++.|++ | +++||+|+.+-   |   -++.++..+..++..
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~In---G---~~v~~~~~l~~~l~~   44 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISAD---G---KNYQSAEKLIDYISS   44 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEET---T---BCCSSHHHHHHHHSS
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEEC---C---EECCCHHHHHHHHHc
Confidence            578999999999998 7 99999999983   2   233444444444443

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=91.44  E-value=0.13  Score=38.87  Aligned_cols=40  Identities=28%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             CCcceeEeecCCC---ceEEEeeCCCCccccccccccCcEeeeec
Q 019871           93 QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        93 kPlgl~~~~~~~g---~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +-+|+.-.. .+|   ++.|..+.|++.|+++| +++||+|+.+-
T Consensus         5 ~~~~~~p~~-~~g~~~G~~V~~~~~~s~A~~aG-l~~GD~I~~in   47 (87)
T 2i6v_A            5 QYVRLSQVK-RDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALN   47 (87)
T ss_dssp             GTEEEEEEE-ETTEEEEEEEEECSCHHHHHHTT-CCTTCEEEEET
T ss_pred             hccceEEEe-eCCeEEEEEEEeCCCCCHHHHCC-CCCCCEEEEEC
Confidence            445555533 244   67788888888889999 99999999983

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=91.43  E-value=0.17  Score=44.64  Aligned_cols=40  Identities=10%  Similarity=0.180  Sum_probs=33.5

Q ss_pred             CcceeEee-----cCCCceEEEeeCCCCcccccccccc-CcEeeeec
Q 019871           94 PYGLKFAK-----GRDGGTYIDAIAPGGSADKTGMFQV-GDKVLATS  134 (334)
Q Consensus        94 Plgl~~~~-----~~~g~v~v~~~~~~~~a~~~~~i~~-gD~v~~~s  134 (334)
                      .+|+.+..     ....+|+|..|.+++.|+++| +++ ||+|+.+-
T Consensus        96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~in  141 (209)
T 3rle_A           96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGAD  141 (209)
T ss_dssp             SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEES
T ss_pred             ccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECC
Confidence            57888853     123689999999999999999 999 99999983

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.16  E-value=0.57  Score=47.14  Aligned_cols=62  Identities=8%  Similarity=-0.015  Sum_probs=57.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      ..+|+...-...+..|...|.+|+.+.|++   ...|+++|......|+.-+|+-+|-|++-...
T Consensus       156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~---G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~  217 (497)
T 1ya0_A          156 VHLGDIARYRNQTSQAESYYRHAAQLVPSN---GQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHhCCCC---CchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence            389999988889999999999999999999   57999999999999999999999999987644

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.04  E-value=0.59  Score=45.02  Aligned_cols=58  Identities=10%  Similarity=0.054  Sum_probs=52.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      .++..+...|++++|+..+.+++..+|-+   -.+|..+-.+|...|+..+|+..|+++-.
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~---E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66778889999999999999999999998   36899999999999999999999998744

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=90.99  E-value=0.23  Score=41.90  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=35.0

Q ss_pred             eEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           86 EYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+++|.    ..+|+.+.   +|  +|..|.+++.|+++| +++||+|+.+-
T Consensus        89 ~~~v~l~~~~~~~lG~~~~---~g--~v~~v~~~s~a~~aG-l~~GD~I~~in  135 (166)
T 1w9e_A           89 ERTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEIN  135 (166)
T ss_dssp             CEEEEEECCTTSCCSEEEE---TT--EEEEECTTSHHHHTT-CCSSEEEEEET
T ss_pred             cEEEEEecCCCCcEeEEEe---CC--EEEEEccCCHHHHcC-CCCCCEEEEEC
Confidence            3566665    45788875   34  899999999999999 99999999973

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=90.40  E-value=0.27  Score=46.95  Aligned_cols=46  Identities=20%  Similarity=0.435  Sum_probs=35.4

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..|++|..|.+++.|+++| +++||+|+.+-      .-++.++..+...+..
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~in------g~~v~~~~~l~~~l~~  307 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLN------GKPLNSFAELRSRIAT  307 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEECEET------TEECSCHHHHHHHHHT
T ss_pred             CceEEEEEeccCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence            3689999999999999999 99999999983      2334555555555554

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=90.33  E-value=0.2  Score=48.37  Aligned_cols=40  Identities=28%  Similarity=0.481  Sum_probs=34.2

Q ss_pred             CcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           94 PYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        94 Plgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      -+|+.+...  .+++++|..|.+++.|+++| +++||+|+.+-
T Consensus        86 giG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~In  127 (388)
T 1fc6_A           86 GVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVD  127 (388)
T ss_dssp             BCSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            367877653  26799999999999999999 99999999984

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=90.21  E-value=0.39  Score=39.23  Aligned_cols=46  Identities=22%  Similarity=0.410  Sum_probs=33.3

Q ss_pred             cCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       102 ~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      ...+++.|..|.+++.|+++  +++||+|+.+-   |   .++.++..+..++.
T Consensus        22 ~~~~gv~V~~V~~~spA~~a--L~~GD~Il~In---G---~~v~~~~dl~~~l~   67 (125)
T 2hga_A           22 HQPDGVQIDSVVPGSPASKV--LTPGLVIESIN---G---MPTSNLTTYSAALK   67 (125)
T ss_dssp             -CCCCEEEEEECSSSGGGGT--SCTTCEEEEET---T---EECSSHHHHHHHHT
T ss_pred             CCCCceEEEEECCCChHHHh--cCCCCEEEEEC---C---EEcCCHHHHHHHHH
Confidence            35678999999999999987  99999999983   2   33444444444444

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=89.73  E-value=0.15  Score=38.52  Aligned_cols=44  Identities=18%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             eEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871          107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus       107 v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      ++|..|.+++.|+++| +++||+|+.+-      ..++.++..+..++...
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~in------g~~v~~~~~~~~~l~~~   49 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVD------GQPLTQWVTFVMLVRDN   49 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEET------TEECCCHHHHHHHHHHC
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEEC------CeEcCCHHHHHHHHhcC
Confidence            5688899999999998 99999999983      23444555555555543

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=89.52  E-value=0.16  Score=44.87  Aligned_cols=29  Identities=10%  Similarity=0.220  Sum_probs=27.0

Q ss_pred             CceEEEeeCCCCccccccccccC-cEeeeec
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVG-DKVLATS  134 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~g-D~v~~~s  134 (334)
                      .|++|..|.|++-|+++| +++| |+|+.+-
T Consensus        16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~in   45 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSIN   45 (209)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTTEEEEEET
T ss_pred             CEEEEEEECCCCHHHHCC-CCcCCeEEEEEC
Confidence            489999999999999999 9999 9999984

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.29  E-value=0.37  Score=40.45  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      .+-.|.++..++++|+|++|.++.+..|+.+|+|
T Consensus        78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N  111 (134)
T 3o48_A           78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  111 (134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence            3446799999999999999999999999999998

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=88.62  E-value=0.38  Score=37.59  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=23.6

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeec
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ++.|....|++.|+++| +++||+|+.+-
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~in   65 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALN   65 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEET
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEEC
Confidence            56677777877789998 99999999983

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.60  E-value=1.9  Score=38.29  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcC--CCC----------C-cchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVL--GSK--PTP----------E-ESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekAL--eld--P~~----------~-e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      .-..+.+..++.++++|..|+.+.+..|  +++  |+.          + +.---+.-+|..+.+.|..+|||.++.+..
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            3445689999999999999999999999  333  332          1 112345567899999999999999999999


Q ss_pred             HcCCC
Q 019871          280 LAGYE  284 (334)
Q Consensus       280 elgp~  284 (334)
                      ...|-
T Consensus       142 ~~~~l  146 (242)
T 3kae_A          142 GKSFL  146 (242)
T ss_dssp             HHCCC
T ss_pred             CCccc
Confidence            98884

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=88.43  E-value=0.14  Score=50.42  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=42.7

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhhcc
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR  168 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLek~  168 (334)
                      .+++|..|.+++.|+++| +++||+|+.+-      ..++.++..+..++....+.+.+...|.
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vn------g~~v~~~~~~~~~l~~~~~~v~l~v~R~  419 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVN------RDRVNSIAEMRKVLAAKPAIIALQIVRG  419 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            489999999999999999 99999999983      3455666666666666555555444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.42  E-value=0.44  Score=40.48  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871          215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP  248 (334)
Q Consensus       215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~  248 (334)
                      .+-.|.++..+|++|+|++|.++.+..|+.+|+|
T Consensus        77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           77 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            3445799999999999999999999999999998

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=87.60  E-value=0.46  Score=45.15  Aligned_cols=54  Identities=24%  Similarity=0.382  Sum_probs=39.7

Q ss_pred             cceeEeecCC------CceEEEeeCCCCcccccccccc-----------CcEeeeeccccccccccccchhhHHHHHH
Q 019871           95 YGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQV-----------GDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus        95 lgl~~~~~~~------g~v~v~~~~~~~~a~~~~~i~~-----------gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      |||.+.....      .|++|..|.+++.|+++| +++           ||+|+++-      .-++.++..+..++.
T Consensus       235 lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~in------g~~v~~~~dl~~~l~  305 (348)
T 3qo6_A          235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVN------GTKVSNGSDLYRILD  305 (348)
T ss_dssp             CCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEET------TBCCSSSHHHHHHHT
T ss_pred             cCcEEccchhhhhcCCceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEEC------CEEeCCHHHHHHHHH
Confidence            7887754321      489999999999999999 888           99999983      234455555556554

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=87.46  E-value=0.11  Score=51.51  Aligned_cols=65  Identities=17%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             ceeEee-cCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhhc
Q 019871           96 GLKFAK-GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK  167 (334)
Q Consensus        96 gl~~~~-~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLek  167 (334)
                      |+.+.. ....+++|..|.+++.|+++| +++||+|+.+-      ..++.++..+..++....+.+.+...|
T Consensus       373 G~~l~~~~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vn------g~~v~~~~~l~~~l~~~~~~v~l~v~R  438 (448)
T 1ky9_A          373 GAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGAN------QQAVKNIAELRKVLDSKPSVLALNIQR  438 (448)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             ceEeeccCCCCeEEEEEecCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHcCCCeEEEEEEE
Confidence            666532 134689999999999999999 99999999983      234444454555555444455554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=87.14  E-value=1.2  Score=38.66  Aligned_cols=107  Identities=14%  Similarity=0.051  Sum_probs=70.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH--H--
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR--V--  289 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~--i--  289 (334)
                      .....++..|.|+.|+-..+.++.+..++++      ...+++..|.++...++|..|+..|++||...-.-.+.  .  
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            5566789999999999999998866433321      13578999999999999999999999998763321110  0  


Q ss_pred             -----hcChhhHHHhcC--hHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871          290 -----RTDPDLENLRAS--EEFDVLLKRFDESFINENAINAIKSL  327 (334)
Q Consensus       290 -----~~Dpdl~~Lr~d--p~F~~lL~~~~e~~~~~~ai~~~k~~  327 (334)
                           ..-|.-..+..+  =+|+ +-.+|.+.-..+.||..+.+|
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ------------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHHHTS
T ss_pred             cccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHHhcC
Confidence                 000100001111  1355 557787877888888887765

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=86.35  E-value=0.71  Score=45.32  Aligned_cols=29  Identities=24%  Similarity=0.649  Sum_probs=27.3

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeeec
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .|++|..|.+++.|+++| +++||+|+.+-
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vn  291 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLN  291 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEEC
Confidence            589999999999999999 99999999983

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=86.34  E-value=0.61  Score=46.11  Aligned_cols=44  Identities=18%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      .+++|..|.+++.|+++| +++||+|+.+-   |   -++.++..+..++.
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vn---G---~~v~~~~~l~~~l~  325 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQIN---D---TKITQATQVKTTIS  325 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEET---T---EECCSHHHHHHHHH
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEEC---C---EEcCCHHHHHHHHH
Confidence            689999999999999999 99999999983   2   23445555555554

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=86.34  E-value=0.45  Score=46.60  Aligned_cols=28  Identities=25%  Similarity=0.557  Sum_probs=26.1

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeec
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .++|..|.||+.|+++| +++||+|+.+-
T Consensus        91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~In  118 (403)
T 3k50_A           91 NALISYVVPGSPAEEAG-LQRGHWIMMMN  118 (403)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             eEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence            48899999999999999 99999999984

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.16  E-value=2.4  Score=42.79  Aligned_cols=48  Identities=13%  Similarity=0.152  Sum_probs=35.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      ....+.|++++|++...   .+  ++   ...|-++|..+.+.|+++.|.++|.++
T Consensus       660 ~~~l~~~~~~~A~~~~~---~~--~~---~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLT---DE--SA---EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHTCHHHHHHHHT---TC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHH---hh--Cc---HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34467788888887732   22  22   468888998888999999999888886

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=86.06  E-value=0.5  Score=44.44  Aligned_cols=30  Identities=30%  Similarity=0.565  Sum_probs=27.7

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~in  284 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIG  284 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEEC
Confidence            3589999999999999999 99999999984

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=85.38  E-value=1.3  Score=35.88  Aligned_cols=46  Identities=17%  Similarity=0.222  Sum_probs=33.9

Q ss_pred             ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.++|+|.   +.+|+++..+. .+.+|..|.+.  +..++ +++||+|+.+-
T Consensus        12 ~~~~V~L~Kg~~G~GFsI~~~~-~g~~V~~I~~~--~~~aG-L~~GD~Il~VN   60 (113)
T 3soe_A           12 LLVTIPLIKGPKGFGFAIADSP-TGQKVKMILDS--QWCQG-LQKGDIIKEIY   60 (113)
T ss_dssp             EEEEEEEECBTTBSSEEEEEET-TEEEEEEESCG--GGSTT-CCTTCEEEEET
T ss_pred             CEEEEEEEECCCcccEEEeCCC-CCcEEEEecCh--HHhCC-CCCCCEEEEEC
Confidence            55788887   56888885433 36779888883  45555 99999999983

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.98  E-value=2.2  Score=39.81  Aligned_cols=61  Identities=10%  Similarity=0.009  Sum_probs=50.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+++.|+.++|++.....++.+|.+..   .-..+--.++..|+++.|++-|+-+.+++|+...
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~---~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDAS---LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            567899999999999999999999953   4444444566679999999999999999998554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.70  E-value=16  Score=32.33  Aligned_cols=100  Identities=26%  Similarity=0.367  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC-CHHHHhcChhhHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE-DFKRVRTDPDLEN  297 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~-~~~~i~~Dpdl~~  297 (334)
                      .-++..+|-.|+|..|+-.+.   .++-     ..+.|..+.||-++.++..|+.++++-|+-.-+ ++   ..|.+++.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~---~lNT-----~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~---~~d~~~~~  105 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLH---KLNT-----CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDP---DVDARIQE  105 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH---TCCB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCC---CCCHHHHT
T ss_pred             hhhhhhhhhcchHhHHHHHHH---hcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc---ccccccce
Confidence            478999999999999987632   2322     568888999999999999999999999943322 00   01222222


Q ss_pred             H---hcChH-HHHHHH-HHHHhhhchhHHHHHHHhhc
Q 019871          298 L---RASEE-FDVLLK-RFDESFINENAINAIKSLFG  329 (334)
Q Consensus       298 L---r~dp~-F~~lL~-~~~e~~~~~~ai~~~k~~~~  329 (334)
                      +   ..|.+ |..++. -+......+.||..|+--||
T Consensus       106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A          106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            2   12444 444443 35666788999999988776

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=82.40  E-value=0.26  Score=46.46  Aligned_cols=29  Identities=24%  Similarity=0.492  Sum_probs=0.0

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeee
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      ..+++|..|.+++.|+++| +++||+|+.+
T Consensus       253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~i  281 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGG-LKENDVIISI  281 (332)
T ss_dssp             ------------------------------
T ss_pred             CCceEEEEeccCCChHHcC-CCCCCEEEEE
Confidence            3589999999999999999 9999999998

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=82.40  E-value=2.6  Score=36.27  Aligned_cols=60  Identities=17%  Similarity=0.089  Sum_probs=52.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      +...++.++|-+.|+.++.+...+   +..|..-|-.-.++|+...|.+-|.+||.++|....
T Consensus        70 ~~ei~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           70 LKAIQEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHHCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            356699999999999999986666   678888888889999999999999999999998554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=82.09  E-value=12  Score=36.92  Aligned_cols=69  Identities=12%  Similarity=-0.048  Sum_probs=56.7

Q ss_pred             hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGS--KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALel--dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      +.|+....-.+-..+.+.|++++|++.|++..+.  .|+    ...|..+-.+|.+.|+.++|++.|++.-+.+-
T Consensus       136 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd----~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~  206 (501)
T 4g26_A          136 IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE----EPELAALLKVSMDTKNADKVYKTLQRLRDLVR  206 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence            4565555556777889999999999999999854  566    47899999999999999999999999876653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=82.08  E-value=7.4  Score=38.32  Aligned_cols=53  Identities=8%  Similarity=-0.063  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .+.....|++++...|..   +..|++-|..+...|+.++|...|++|+.. |.+..
T Consensus       195 ~~Rv~~~ye~al~~~p~~---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~  247 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYA---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF  247 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred             HHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence            456788999999999987   679999999999999999999999999999 98654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.64  E-value=9.8  Score=41.92  Aligned_cols=61  Identities=13%  Similarity=-0.125  Sum_probs=45.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-----hcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          220 REGLQLYRTGKYEVAREKFESVL-----GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekAL-----eldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      .+=..+.+.|+.++|.+.|++.-     ...|+    ...|.-+=..|.+.|++++|++.|++-.+.|..
T Consensus       132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~  197 (1134)
T 3spa_A          132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT  197 (1134)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            55567788888888888886643     24566    467777888888888888888888888777653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=80.54  E-value=23  Score=33.70  Aligned_cols=93  Identities=15%  Similarity=0.097  Sum_probs=62.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------cchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------ESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      ...|......|+.++|+..+++|+++-....                   .+..+...++.++..+|++++|+..+++++
T Consensus       119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~  198 (388)
T 2ff4_A          119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT  198 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3556666678999999999999998853321                   012344567778889999999999999999


Q ss_pred             HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHH
Q 019871          280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDE  313 (334)
Q Consensus       280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e  313 (334)
                      ..+|-+-... .- -+..+...++..++++.|++
T Consensus       199 ~~~P~~E~~~-~~-lm~al~~~Gr~~~Al~~y~~  230 (388)
T 2ff4_A          199 FEHPYREPLW-TQ-LITAYYLSDRQSDALGAYRR  230 (388)
T ss_dssp             HHSTTCHHHH-HH-HHHHHHTTTCHHHHHHHHHH
T ss_pred             HhCCCCHHHH-HH-HHHHHHHcCCHHHHHHHHHH
Confidence            9999754311 11 12234445566666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-06
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	8e-06
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-05
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	5e-05
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	8e-05
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	1e-04
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	1e-04
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-04
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-04
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-04
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	5e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-04
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	5e-04
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	8e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-04
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	0.001
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	0.002
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.002
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	0.002
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	0.002
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.003
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	0.003
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	0.004
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	0.004

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 73  AESGSEEQEEKYEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVG 127
             SGS  Q+  ++ + V++E   + +G     GR+     Y+  +A  G A + G  +VG
Sbjct: 1   GSSGSSGQD--FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVG 58

Query: 128 DKVL 131
           D+++
Sbjct: 59  DQII 62

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (98), Expect = 8e-06
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 87  YEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVL 131
           Y VE++    P G+  +   +      I ++  GG A++TG   +GD++L
Sbjct: 5   YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRIL 54

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 75  SGSEEQEEKYEEYEVEI---EQPYGLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDK 129
           SGS      Y+E +V +   E  +G +   G + G    I A+   GSAD+ G    GD+
Sbjct: 3   SGSSG----YKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDE 58

Query: 130 VLA 132
           ++ 
Sbjct: 59  LVY 61

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 78  EEQEEKYEEYEVEIEQPYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
            +++  +    V  E   GLK   G +       YI  + PGG   K G  + GD++++
Sbjct: 3   LDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 61

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 8e-05
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 89  VEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           V+ +    +P G+           +  I  GG   + G   VGD++  
Sbjct: 5   VQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIRE 52

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 73  AESGSEEQEEK---YEEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQV 126
             SG E ++++    E   V+++   +P G+    G  GG Y+  +  G  A + G+ + 
Sbjct: 4   GSSGGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGL-EY 62

Query: 127 GDKVLAT 133
           GD++L  
Sbjct: 63  GDQLLEF 69

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 60  AKASETEAQASPEAESGSEEQEEKYEEYEVEIEQ-PYGLKFA-KGRDGGTYIDAIAPGGS 117
           +  S        +            +  + ++     GL            I  +   G+
Sbjct: 2   SSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGA 61

Query: 118 ADKTGMFQVGDKVLA 132
           A   G+ Q GD +++
Sbjct: 62  AASDGILQPGDVLIS 76

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 77  SEEQEEKYEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVL 131
            +  + K       ++     +G     G +      + ++ P G A + G  + GD ++
Sbjct: 11  RDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIV 70

Query: 132 A 132
            
Sbjct: 71  Y 71

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +   + +E      G     G          Y+  +   G+A + G  + GD+++A
Sbjct: 2   QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIA 57

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 69  ASPEAESGSEEQEEKYEEYEVEI---EQPYGLKFAKGRD----GGTYIDAIAPGGSADKT 121
           +S +     + +E + EE ++     +   GL      D     G YI  I P   A K 
Sbjct: 5   SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64

Query: 122 GMFQVGDKVLA 132
           G  + GD+++ 
Sbjct: 65  GRIREGDRIIQ 75

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 80  QEEKYEEYEVEIEQPYGLKFAKGRDG-----GTYIDAIAPGGSADKTGMFQVGDKVLAT 133
           +E +     ++ +   GL     +       G Y+ ++  GG+AD  G    GD++L+ 
Sbjct: 1   KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 59

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 6/61 (9%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278
           +    + Y+ G +E A      +   +P   +++     ++  + +  ++         A
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

Query: 279 L 279
           +
Sbjct: 60  I 60

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 75  SGSEEQEEKYEEYEVEI----EQPYGLKFAKGRD------GGTYIDAIAPGGSADKTGMF 124
           S    Q    E  EV +       +G++                I  I     A++ G+ 
Sbjct: 5   SSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64

Query: 125 QVGDKVLA 132
           Q+GD+V+A
Sbjct: 65  QIGDRVMA 72

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 85  EEYEVEIE----QPYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDK 129
           +   VE+     +  G+    GR             G +I  +     A K G  + GD+
Sbjct: 1   QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 60

Query: 130 VL 131
           ++
Sbjct: 61  IV 62

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 88  EVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133
           EV +    +  G   A G        D   YI  I  GG+A K G  Q+GD++LA 
Sbjct: 4   EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 59

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275
            Q   EGL+  + G    A   FE+ +   P   +   A   +    ++  Q    +SAL
Sbjct: 20  PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP---KHMEAWQYLGTTQAENEQELLAISAL 76

Query: 276 EDAL 279
              L
Sbjct: 77  RRCL 80

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 85  EEYEVEIE---QPYGLKFAKGRDG--------GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E + VE+E      G+       G        G ++  +  GG+A + G  QV D+++ 
Sbjct: 2   ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 60

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 88  EVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
           +V IE    +  G+   +   G       I  +  GG A+K+G   +GD++++
Sbjct: 1   DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMS 53

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 92  EQPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLA 132
               G+    G +       I  I  GGSA   G  +VG  +L 
Sbjct: 16  AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 67  AQASPEAESGSEEQEEKYEEYEVEIEQPYGLKFAKGRD---GGTYIDAIAPGGSADKTGM 123
           ++ +    S  +   +      ++ E    L    G D   G   + A+  GG+A++ G 
Sbjct: 2   SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGG 61

Query: 124 FQVGDKV 130
              GD++
Sbjct: 62  VVKGDEI 68

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 85  EEYEVEI----EQPYGLKFA------KGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132
           E  EV +       +GL+        +       +  I P   A++ G+ QVGD+VL+
Sbjct: 8   ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLS 65

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 71  PEAESGSEEQEEKYEEYEVEI-------EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGM 123
           P  +    E    Y    V+I       + P G    +       I  I  GG+A+K+G+
Sbjct: 1   PITDERVYESIGHYGGETVKIVRIEKARDIPLGATV-RNEMDSVIISRIVKGGAAEKSGL 59

Query: 124 FQVGDKVLA 132
              GD+VL 
Sbjct: 60  LHEGDEVLE 68

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 75  SGS--EEQEEKYEEYEVEIE----QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQ 125
           SGS  +          VEI        G+              ID I P    D++G   
Sbjct: 3   SGSSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALH 62

Query: 126 VGDKVL 131
            GD +L
Sbjct: 63  PGDHIL 68

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 85  EEYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLA 132
             + V++        G+  +            I  I  G  A +TG  ++GDK+LA
Sbjct: 10  GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLA 65

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 85  EEYEVEIE---QPYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVL 131
           E  E+ +E      G   A G D          +I  I PGG+A + G  +V D +L
Sbjct: 1   EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.43
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.4
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.36
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.28
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.28
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.27
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.27
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.25
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.25
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.23
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.21
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.21
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.21
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.15
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.13
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.12
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.06
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.03
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.0
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.9
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.88
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.87
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.81
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.47
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.37
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.37
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.36
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.36
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.28
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.25
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.17
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.0
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	97.99
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	97.97
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.94
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	97.92
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	97.92
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	97.9
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	97.87
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	97.85
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	97.83
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	97.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.79
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	97.74
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	97.74
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	97.71
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	97.71
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	97.71
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	97.71
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	97.69
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	97.68
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	97.65
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	97.64
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	97.59
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	97.55
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	97.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.54
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	97.52
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	97.51
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	97.47
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.46
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	97.45
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	97.42
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	97.41
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	97.41
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	97.38
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	97.32
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	97.32
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	97.31
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	97.31
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	97.29
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	97.29
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	97.25
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	97.24
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	97.22
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	97.2
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.2
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.19
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.18
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	97.15
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	97.06
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	97.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.01
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.97
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	96.96
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	96.92
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	96.9
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	96.77
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	96.66
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	96.65
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.6
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	96.52
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	96.3
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	96.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.13
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	96.09
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	96.06
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	95.62
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	94.41
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.39
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	94.25
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	93.75
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	92.53
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	91.86
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	85.82

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.9e-13  Score=111.90  Aligned_cols=92  Identities=16%  Similarity=0.110  Sum_probs=84.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871          193 ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG  271 (334)
Q Consensus       193 ~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA  271 (334)
                      +..+-.+.++..|.++++++|+....+ ++|.+++++|++++|+..|+++|+++|++   ..+|+++|.||..+|++++|
T Consensus        21 ~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~---~~a~~~~g~~~~~~g~~~eA   97 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAA   97 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc---hHHHHHHHHHHHHcCCHHHH
Confidence            344445668889999999999987776 99999999999999999999999999998   68999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHH
Q 019871          272 LSALEDALLAGYEDFK  287 (334)
Q Consensus       272 l~~lekAIelgp~~~~  287 (334)
                      +.+|++|++++|++..
T Consensus        98 ~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          98 LRDYETVVKVKPHDKD  113 (159)
T ss_dssp             HHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHcCCCCHH
Confidence            9999999999999776

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.9e-13  Score=107.32  Aligned_cols=91  Identities=15%  Similarity=0.091  Sum_probs=82.3

Q ss_pred             hhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHH
Q 019871          194 SNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGL  272 (334)
Q Consensus       194 ~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl  272 (334)
                      ..+-.+.++..|.++++++|.....+ ++|.+++++|+|++|+..|+++++++|++   +.+|+++|.||..+|++++|+
T Consensus        15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch---hhHHHHHHHHHHHccCHHHHH
Confidence            34445667888999999999988866 99999999999999999999999999998   689999999999999999999


Q ss_pred             HHHHHHHHcCCCCHH
Q 019871          273 SALEDALLAGYEDFK  287 (334)
Q Consensus       273 ~~lekAIelgp~~~~  287 (334)
                      .+|++|++++|++..
T Consensus        92 ~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          92 RTYEEGLKHEANNPQ  106 (117)
T ss_dssp             HHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHhCCCCHH
Confidence            999999999999754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4e-13  Score=113.10  Aligned_cols=92  Identities=12%  Similarity=0.090  Sum_probs=82.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChH
Q 019871          191 GVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVK  269 (334)
Q Consensus       191 g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~e  269 (334)
                      ..+..+-.+.++..|.++++++|.....+ ++|.++.++|+|++|+.+|++||+++|++   ..+|+++|.||..+|+++
T Consensus        13 ~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~---~~a~~~lg~~~~~l~~~~   89 (201)
T d2c2la1          13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYD   89 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHH
Confidence            33445556778899999999999988776 99999999999999999999999999998   679999999999999999


Q ss_pred             HHHHHHHHHHHcCCCC
Q 019871          270 AGLSALEDALLAGYED  285 (334)
Q Consensus       270 eAl~~lekAIelgp~~  285 (334)
                      +|+.+|++|++++|++
T Consensus        90 ~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          90 EAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCccc
Confidence            9999999999998864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.8e-13  Score=113.30  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=84.9

Q ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcC
Q 019871          213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTD  292 (334)
Q Consensus       213 ~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~D  292 (334)
                      |.+.+..++|+.+++.|+|++|+..|++||+++|++   +.+|+|+|.||.++|++++|+.+|++||+++|++...+.. 
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~-   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH-
Confidence            566777899999999999999999999999999998   7899999999999999999999999999999998873322 


Q ss_pred             hhhHHHhcChHHHHHHHHHHHhhh
Q 019871          293 PDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       293 pdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      -+. .+....+|.+++..|++.+.
T Consensus        78 lg~-~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          78 LGQ-CQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHH-HHHHCCCHHHHHHHHHHHHH
Confidence            222 23445689999988888763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-12  Score=119.69  Aligned_cols=128  Identities=10%  Similarity=0.016  Sum_probs=108.2

Q ss_pred             HhhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhhH---HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc
Q 019871          156 QRVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNRV---REIQMQNYMKKKEQKERREQDL-REGLQLYRT  228 (334)
Q Consensus       156 ~R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~l---~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~  228 (334)
                      ...|.++.+.++..++++...   +++.. ...+|.+.|.+...+   .+.++..+.++++++|+....+ ++|.++.++
T Consensus        47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l  125 (315)
T d2h6fa1          47 DYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL  125 (315)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh
Confidence            456888889888888887432   22222 245788888776543   3667889999999999987776 999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |++++|+..|+++++++|++   ..+|+++|.++..+|++++|+.+|++||+++|.+..
T Consensus       126 ~~~~eAl~~~~kal~~dp~n---~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~  181 (315)
T d2h6fa1         126 RDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS  181 (315)
T ss_dssp             TCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHhhhhhhhhcc---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHH
Confidence            99999999999999999999   689999999999999999999999999999999876

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.2e-12  Score=100.14  Aligned_cols=94  Identities=13%  Similarity=0.117  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      +..++|..+++.|+|++|+.+|+++|+++|++   +.+|+++|.||..+|++++|+.+|++||+++|.+...+..- .. 
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-g~-   79 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK-AA-   79 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-HH-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH-HH-
Confidence            45689999999999999999999999999999   68999999999999999999999999999999988743222 21 


Q ss_pred             HHhcChHHHHHHHHHHHhh
Q 019871          297 NLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~  315 (334)
                      .+....+|++++..|++.+
T Consensus        80 ~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          80 ALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHH
Confidence            3444568999999998888

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.2e-11  Score=107.51  Aligned_cols=100  Identities=19%  Similarity=0.198  Sum_probs=89.3

Q ss_pred             HHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871          185 RAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC  261 (334)
Q Consensus       185 ~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a  261 (334)
                      ..+.+.|.++..+  .+.++..|.++++++|+....+ ++|.++.++|+|++|+..|+++++++|++   +.+|+++|.+
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~  114 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh---hhhHHHHHHH
Confidence            4455667666444  5778899999999999988876 99999999999999999999999999998   5799999999


Q ss_pred             HHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          262 YSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       262 y~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |..+|++++|+..|+++++.+|.+..
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~~~~  140 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPNDPF  140 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhccccHH
Confidence            99999999999999999999998765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.2e-12  Score=103.44  Aligned_cols=96  Identities=15%  Similarity=0.203  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhh-
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDL-  295 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl-  295 (334)
                      ..++|+.+++.|+|++|+.+|+++|+++|++   +.+|+|+|.||.++|++++|+.+|++||+++|.+.. +...-..+ 
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3478888888888888888888888888887   678888888888888888888888888888776543 11000000 


Q ss_pred             ---HHHhcChHHHHHHHHHHHhhh
Q 019871          296 ---ENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       296 ---~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                         ..+.....|+.+++.|.+.+.
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHh
Confidence               112334467777777766653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-11  Score=105.23  Aligned_cols=125  Identities=18%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             hhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHH
Q 019871          159 GPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAR  235 (334)
Q Consensus       159 G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl  235 (334)
                      |..+...+++.++++....+.+.. .+.++|.|.+...+  .+.++..|.++++++|+...++ ++|.+++++|+|++|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~-~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPH-SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence            556666666666665432222211 12344555444333  2444556666666666554443 6666666666666666


Q ss_pred             HHHHHHHhcCCCCCc-------------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          236 EKFESVLGSKPTPEE-------------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       236 ~~fekALeldP~~~e-------------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ..|++|++..|.+..             ...++||+|.+|..+|++++|++.|++|+++.|+
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            666666655444320             0244556666666666666666666666665554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.5e-11  Score=100.59  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE  296 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~  296 (334)
                      ....+|+.+++.|+|++|+.+|+++++++|++   +.+|+++|.||..+|++++|+.+|++||+++|.+...+..- . .
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~-g-~   86 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR-A-A   86 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-H-H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhh---hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH-H-H
Confidence            44589999999999999999999999999998   78999999999999999999999999999999987733221 1 1


Q ss_pred             HHhcChHHHHHHHHHHHhhh
Q 019871          297 NLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       297 ~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      .+....+|.++++.|++.+.
T Consensus        87 ~~~~~g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          87 SNMALGKFRAALRDYETVVK  106 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            23445678888888887773

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.6e-11  Score=105.95  Aligned_cols=111  Identities=12%  Similarity=0.102  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA  278 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA  278 (334)
                      +.++..|.+.  ..++...++++|.+++.+|+|++|+++|++||+++|++   +.+|+|+|.||.++|++++|+.+|++|
T Consensus        22 ~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---~~a~~~~g~~~~~~g~~~~A~~~~~kA   96 (192)
T d1hh8a_          22 KGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEA   96 (192)
T ss_dssp             HHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---hhhHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3344555432  33455556799999999999999999999999999998   789999999999999999999999999


Q ss_pred             HHcCCCCHH---------------HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          279 LLAGYEDFK---------------RVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       279 Ielgp~~~~---------------~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      |+..+.+..               .+..+..+. ....++|.++++.+.+.+
T Consensus        97 l~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~-~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          97 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM-YAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred             HHhCccCchHHHHHhhhhcccchHHHHHHHHHH-HHHCCCHHHHHHHHHHHH
Confidence            997664321               111111221 234567888888887776

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.27  E-value=1.7e-11  Score=102.07  Aligned_cols=131  Identities=11%  Similarity=0.095  Sum_probs=92.8

Q ss_pred             ccccccchhhHHHHHH-HhhhhHHHHhhcccchhhhhc-hhcHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHH
Q 019871          140 EIWPAAEYGRTMYTIR-QRVGPLLMKMQKRYGKMEQTG-ELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ  217 (334)
Q Consensus       140 ~~w~~~~~~~v~sai~-~R~G~V~lkLek~~~aie~~~-~l~ek~~~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~  217 (334)
                      ++|...+=.++..+.. ...|+.+++.+++..++..+. .+.-   +   ..........    .......+.    -..
T Consensus         4 ~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~---~---~~~~~~~~~~----~~~~~~~~~----~~~   69 (153)
T d2fbna1           4 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF---F---IHTEEWDDQI----LLDKKKNIE----ISC   69 (153)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---T---TTCTTCCCHH----HHHHHHHHH----HHH
T ss_pred             chhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C---cchhhhhhHH----HHHhhhhHH----HHH
Confidence            5677666667777655 458888998888888887432 1110   0   0000000000    001111110    112


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..|+|.+++++|+|++|+..|+++|+++|++   ..+||++|.||..+|++++|+.+|++|++++|++..
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhccccccchh---hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3499999999999999999999999999998   689999999999999999999999999999999765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.1e-11  Score=109.35  Aligned_cols=128  Identities=14%  Similarity=0.176  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+.+...|+....+ ++|.++.++|++++|+.+|+++++++|++   +.+|+++|.+|..+|++++|+.+|+
T Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~  264 (323)
T d1fcha_         188 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRSRYNLGISCINLGAHREAVEHFL  264 (323)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc---HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4566788888899999877665 99999999999999999999999999998   6899999999999999999999999


Q ss_pred             HHHHcCCCCHH-HHhcChhhHHHhcChHHHHHHHHHHH----hhhchhHHHHHHHhhcc
Q 019871          277 DALLAGYEDFK-RVRTDPDLENLRASEEFDVLLKRFDE----SFINENAINAIKSLFGL  330 (334)
Q Consensus       277 kAIelgp~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e----~~~~~~ai~~~k~~~~~  330 (334)
                      +||+++|++.. ..........+..  .+..++..+.+    .....+.|+++.+.||.
T Consensus       265 ~al~l~p~~~~~~~~~~~~~~~~~~--~l~~al~~~~~~d~~~~~~~~~l~~l~~~~~~  321 (323)
T d1fcha_         265 EALNMQRKSRGPRGEGGAMSENIWS--TLRLALSMLGQSDAYGAADARDLSTLLTMFGL  321 (323)
T ss_dssp             HHHHHHHTC------CCCCCHHHHH--HHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHhCCcChhhhhhhHHHHHHHHH--HHHHHHHHcCCHHHHHHHHHhCHHHHHHHhCC
Confidence            99999998765 2233332223321  23444443332    12566788888888873

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.25  E-value=5.1e-11  Score=94.10  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..+++|..+++.|++++|+.+|+++++++|++   +.+|+++|.||..+|++++|+.+|++||+++|++..
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   85 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   85 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc---chhhhhhhhhhhhhhhHHHhhccccccccccccccc
Confidence            35788999999999999999999999999998   679999999999999999999999999999998765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=2.6e-11  Score=101.67  Aligned_cols=74  Identities=19%  Similarity=0.148  Sum_probs=66.3

Q ss_pred             hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          211 QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       211 l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ++|..... .++|.++.++|+|++|+..|++||+++|++   +.+|+++|.||..+|++++|+.+|++|++++|++..
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            33444444 499999999999999999999999999998   689999999999999999999999999999999654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.24  E-value=2.3e-11  Score=100.87  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRT----------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN  266 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~----------g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG  266 (334)
                      .+.+...|.++++++|++.+.+ ++|.+++.+          +++++|+..|++||+++|++   +.+|+|+|.+|..+|
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~---~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---DEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh---hHHHhhHHHHHHHcc
Confidence            4667899999999999998776 999999854          55689999999999999999   689999999999876


Q ss_pred             C-----------hHHHHHHHHHHHHcCCCCHH
Q 019871          267 Q-----------VKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       267 ~-----------~eeAl~~lekAIelgp~~~~  287 (334)
                      +           +++|+++|++||+++|++..
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~  121 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  121 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence            4           69999999999999998643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2.8e-11  Score=105.00  Aligned_cols=93  Identities=12%  Similarity=0.075  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLEN  297 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~  297 (334)
                      .+++|.++++.|+|++|+..|+++|+++|++   +.+|+++|.||..+|++++|+++|++|++++|++...... -+. .
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-lg~-~  114 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGI-A  114 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH-HHH-H
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHH-HHH-H
Confidence            4599999999999999999999999999999   6899999999999999999999999999999997763221 122 2


Q ss_pred             HhcChHHHHHHHHHHHhh
Q 019871          298 LRASEEFDVLLKRFDESF  315 (334)
Q Consensus       298 Lr~dp~F~~lL~~~~e~~  315 (334)
                      +....+|..+++.|++.+
T Consensus       115 ~~~~g~~~~A~~~~~~al  132 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFY  132 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            334567888888887776

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.5e-11  Score=107.16  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED  277 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek  277 (334)
                      +.++..|.++++++|+....+ ++|.++...|++++|+..|++++...|.+   ...++.+|.+|..+|++++|+..|++
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~  330 (388)
T d1w3ba_         254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---ADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc---chhhhHHHHHHHHCCCHHHHHHHHHH
Confidence            344455555555555544433 55555666666666666666666555555   44555556666666666666666666


Q ss_pred             HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      ||+++|++...... -+ ..+....+|+++++.|++.+
T Consensus       331 al~~~p~~~~~~~~-la-~~~~~~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         331 ALEVFPEFAAAHSN-LA-SVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             HTTSCTTCHHHHHH-HH-HHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHH-HH-HHHHHcCCHHHHHHHHHHHH
Confidence            66655555442211 11 12334445555555555555

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.21  E-value=3.9e-10  Score=94.66  Aligned_cols=130  Identities=15%  Similarity=0.112  Sum_probs=89.5

Q ss_pred             ccccccchhhHHHHHH-HhhhhHHHHhhcccchhhhhc-hhcHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHH
Q 019871          140 EIWPAAEYGRTMYTIR-QRVGPLLMKMQKRYGKMEQTG-ELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQ  217 (334)
Q Consensus       140 ~~w~~~~~~~v~sai~-~R~G~V~lkLek~~~aie~~~-~l~ek~~~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~  217 (334)
                      |.|....-.++..+-. ...|+.+.+.+++..+++.+. .+.-   +    ... ...............       ...
T Consensus         2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~---~----~~~-~~~~~~~~~~~~~~~-------~~~   66 (168)
T d1kt1a1           2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSW---L----EME-YGLSEKESKASESFL-------LAA   66 (168)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---H----TTC-CSCCHHHHHHHHHHH-------HHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---H----HHh-hccchhhhhhcchhH-------HHH
Confidence            4566554445444333 457888888888888877432 1110   0    000 000000000000000       112


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..|+|.+++++|+|++|+..|+++++++|++   ..+|+++|.||..+|++++|+.+|++|++++|++..
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3489999999999999999999999999998   689999999999999999999999999999999765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.7e-11  Score=93.45  Aligned_cols=74  Identities=14%  Similarity=0.063  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ...++|++|.++++.|+|++|+..|++|+++.|.+..    .+.+++|+|.||.++|++++|+.++++||+++|++..
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence            3567899999999999999999999999999776532    2578999999999999999999999999999999765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.9e-11  Score=98.88  Aligned_cols=67  Identities=9%  Similarity=0.012  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..++|.+++++|+|++|+..++++|+++|++   +.+|+++|.||..+|++++|+.+|++|++++|++..
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~  131 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccccc---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            3489999999999999999999999999998   789999999999999999999999999999998765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.16  E-value=5.6e-11  Score=93.89  Aligned_cols=79  Identities=15%  Similarity=0.096  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      .+.++..|.+.++++|+....+ ++|.++.+.|++++|+.+|+++++++|++   ..+|+++|.+|..+|++++|+++|+
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~la~~y~~~g~~~~A~~~l~  108 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLR  108 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc---ccchHHHHHHHHHCCCHHHHHHHHH
Confidence            4567788999999999987776 99999999999999999999999999998   6899999999999999999999999


Q ss_pred             HHH
Q 019871          277 DAL  279 (334)
Q Consensus       277 kAI  279 (334)
                      +.|
T Consensus       109 ~~l  111 (112)
T d1hxia_         109 AWL  111 (112)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.6e-11  Score=95.53  Aligned_cols=92  Identities=12%  Similarity=0.054  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHH
Q 019871          195 NRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTG---KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKA  270 (334)
Q Consensus       195 ~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g---~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ee  270 (334)
                      ..-.+.+...|.+++.++|...+. +++|.++++.+   ++++|+..|+++++.+|.+. ...+||++|.||..+|++++
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~-~~~~~~~Lg~~y~~~g~~~~   90 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEK   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHHhhhHH
Confidence            333455678999999999998665 69999998754   55679999999999998752 13589999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHH
Q 019871          271 GLSALEDALLAGYEDFK  287 (334)
Q Consensus       271 Al~~lekAIelgp~~~~  287 (334)
                      |+++|++||+++|++..
T Consensus        91 A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          91 ALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhCcCCHH
Confidence            99999999999999765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.6e-10  Score=105.13  Aligned_cols=112  Identities=11%  Similarity=0.041  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~-yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      +.+++.|.++|+++|....++ ++|.++..+|+ +++|+..|+++++++|++   ..+|+++|.++..+|++++|+..|+
T Consensus        60 ~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---~~a~~~~~~~~~~l~~~~eAl~~~~  136 (315)
T d2h6fa1          60 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHHRRVLVEWLRDPSQELEFIA  136 (315)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---hhHHHHHhHHHHhhccHHHHHHHHh
Confidence            667899999999999998776 99999999875 999999999999999999   7899999999999999999999999


Q ss_pred             HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                      +||+++|.+...+.. ... .+.....|+.+++.|++.+
T Consensus       137 kal~~dp~n~~a~~~-~~~-~~~~~~~~~~Al~~~~~al  173 (315)
T d2h6fa1         137 DILNQDAKNYHAWQH-RQW-VIQEFKLWDNELQYVDQLL  173 (315)
T ss_dssp             HHHHHCTTCHHHHHH-HHH-HHHHHTCCTTHHHHHHHHH
T ss_pred             hhhhhhhcchHHHHH-HHH-HHHHHHhhHHHHHHHHHHH
Confidence            999999998873222 111 1222345666666666666

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.9e-10  Score=102.22  Aligned_cols=127  Identities=12%  Similarity=-0.012  Sum_probs=81.5

Q ss_pred             hhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC
Q 019871          157 RVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRTGK  230 (334)
Q Consensus       157 R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~  230 (334)
                      .+|.++...+++..+++...   ++..+. ..++.+.|.+....  ...++..|...+...|..... ..+|.++.+.|+
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC
Confidence            35666666666666655321   111110 12233334333322  244556666666666665544 378888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      |++|+..|+++++++|++   +.+|+++|.+|..+|++++|+.+|++||+++|++..
T Consensus       321 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            888888888888888877   567888888888888888888888888888887654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.9e-10  Score=100.12  Aligned_cols=90  Identities=12%  Similarity=0.027  Sum_probs=81.3

Q ss_pred             hhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHH
Q 019871          194 SNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGL  272 (334)
Q Consensus       194 ~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl  272 (334)
                      ..+..+.++..|.++++.+|+....+ ++|.++...|++++|+.+|+++++++|++   ..+|+++|.+|..+|++++|+
T Consensus        31 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~  107 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFTNESLQRQAC  107 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc---ccccccccccccccccccccc
Confidence            34445678889999999999987665 99999999999999999999999999998   689999999999999999999


Q ss_pred             HHHHHHHHcCCCCH
Q 019871          273 SALEDALLAGYEDF  286 (334)
Q Consensus       273 ~~lekAIelgp~~~  286 (334)
                      +.|++++...|...
T Consensus       108 ~~~~~~~~~~~~~~  121 (323)
T d1fcha_         108 EILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHHHHHTSTTTG
T ss_pred             cchhhHHHhccchH
Confidence            99999999998743

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.2e-09  Score=91.99  Aligned_cols=107  Identities=19%  Similarity=0.266  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e------------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ..++|..+++.|+|++|+.+|++||++.|....            ...+|.|+|.||.++|++++|+.++++||+++|.+
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~   95 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN   95 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence            448999999999999999999999999887631            23678899999999999999999999999999998


Q ss_pred             HHHHhcChhhHHHhcChHHHHHHHHHHHhhh----chhHHHHHHH
Q 019871          286 FKRVRTDPDLENLRASEEFDVLLKRFDESFI----NENAINAIKS  326 (334)
Q Consensus       286 ~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~----~~~ai~~~k~  326 (334)
                      ...+..- + ..+....+|..++..|++.+.    +..+...+..
T Consensus        96 ~~a~~~~-g-~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          96 EKGLSRR-G-EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHH-H-HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhhhHHH-H-HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            8733221 1 234456789999998888773    3444444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.6e-10  Score=90.40  Aligned_cols=89  Identities=17%  Similarity=0.222  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHHHHCCChHH
Q 019871          196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKA  270 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~----~~a~yNlA~ay~~lG~~ee  270 (334)
                      +..+.++..|.++++++|++...+ ++|.+++++|+|++|+..|+++|+++|++...    +.+|+++|.++..++++++
T Consensus        18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~   97 (128)
T d1elra_          18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKD   97 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            334667888999999999987766 99999999999999999999999999987531    3577888889999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 019871          271 GLSALEDALLAGYE  284 (334)
Q Consensus       271 Al~~lekAIelgp~  284 (334)
                      |+.+|++++..++.
T Consensus        98 A~~~~~kal~~~~~  111 (128)
T d1elra_          98 AIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999988654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.00  E-value=4e-09  Score=87.26  Aligned_cols=108  Identities=15%  Similarity=0.128  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE-------------SSVASYNVACCYSKLNQVKAGLSALEDALLAGY  283 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e-------------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp  283 (334)
                      .....|+.+|+.|+|++|+..|++||.+-|....             ....|+|+|.||.++|++++|+++|++||+++|
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence            3458999999999999999999999988776531             134789999999999999999999999999999


Q ss_pred             CCHH-HHhcChhhHHHhcChHHHHHHHHHHHhhh----chhHHHHHHHh
Q 019871          284 EDFK-RVRTDPDLENLRASEEFDVLLKRFDESFI----NENAINAIKSL  327 (334)
Q Consensus       284 ~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~----~~~ai~~~k~~  327 (334)
                      .+.+ +.+....   +....+|..++..|.+.+.    |..+.+.++.+
T Consensus        99 ~~~ka~~~~g~~---~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          99 NNVKALYKLGVA---NMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             TCHHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             hhhhhhHHhHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9987 4433333   3344679999999998883    34455555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.90  E-value=7.5e-09  Score=86.56  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e------------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      ....+|+.+++.|+|++|+..|++||..-|....            ...+|.|+|.||.++|++++|+.++++||+++|.
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~   96 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA   96 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence            3458999999999999999999999987665421            2356889999999999999999999999999999


Q ss_pred             CHHH-HhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          285 DFKR-VRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       285 ~~~~-i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      +... .+..-   .+....+|.++++.|.+.+.
T Consensus        97 ~~~a~~~~~~---~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          97 NEKGLYRRGE---AQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             CHHHHHHHHH---HHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH---HHHHcCCHHHHHHHHHHHHH
Confidence            8883 33322   24445679999999988884

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.88  E-value=1.4e-09  Score=89.88  Aligned_cols=89  Identities=11%  Similarity=-0.024  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhhccCH------------HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--------cchHHH
Q 019871          197 VREIQMQNYMKKKEQKERR------------EQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--------ESSVAS  255 (334)
Q Consensus       197 l~e~q~~~y~~~iel~~~~------------~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~--------e~~~a~  255 (334)
                      ..+.+++.|.+++++.|+.            .. ..++|.++.++|+|++|+..|+++|++.|...        ....+|
T Consensus        24 ~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~  103 (156)
T d2hr2a1          24 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV  103 (156)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHH
Confidence            3556777888888776542            12 23999999999999999999999998865421        113579


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          256 YNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       256 yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      +|+|.+|..+|++++|+.+|++|+++.|+.
T Consensus       104 ~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         104 YSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            999999999999999999999999997653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.87  E-value=6.4e-09  Score=86.67  Aligned_cols=106  Identities=15%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTP-------------EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~-------------~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ...|..++..|+|++|+..|++||++.+..             +....+|+|+|.||.++|++++|+.+|++||+++|.+
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  110 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  110 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence            477999999999999999999998653321             0125789999999999999999999999999999998


Q ss_pred             HH-HHhcChhhHHHhcChHHHHHHHHHHHhhhc----hhHHHHHHHh
Q 019871          286 FK-RVRTDPDLENLRASEEFDVLLKRFDESFIN----ENAINAIKSL  327 (334)
Q Consensus       286 ~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~----~~ai~~~k~~  327 (334)
                      .. +......   +....+|+.++..|++.+..    ..+...+..+
T Consensus       111 ~~a~~~~g~~---~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1         111 TKALYRRAQG---WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHhHHHH---HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            87 4333322   34456899999999988833    3455444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.81  E-value=3e-09  Score=87.92  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=71.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC----
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYED----  285 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e---------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~----  285 (334)
                      +..|..+++.|+|++|+..|++||+++|+.++         .+.+|+|+|.||..+|++++|+.++++||++.+..    
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            36689999999999999999999999998753         24689999999999999999999999999875421    


Q ss_pred             ---HH---HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871          286 ---FK---RVRTDPDLENLRASEEFDVLLKRFDESF  315 (334)
Q Consensus       286 ---~~---~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~  315 (334)
                         ..   .+..... ..+....+++++++.|++.+
T Consensus        93 ~~~~~~~~~a~~~~g-~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          93 QDEGKLWISAVYSRA-LALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             STHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccchhHHHHhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence               11   1111111 22344556666666666555

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=5.4e-09  Score=86.16  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC----------CChHHHHHHHHHHHHcCCCCHHHHhc-
Q 019871          223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL----------NQVKAGLSALEDALLAGYEDFKRVRT-  291 (334)
Q Consensus       223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l----------G~~eeAl~~lekAIelgp~~~~~i~~-  291 (334)
                      ..+.++++|++|+..|++|++++|++   +.+|+++|.+|..+          +.+++|+.+|++||+++|++...... 
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~---~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcc---hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            34677889999999999999999999   68999999999854          45689999999999999998773211 


Q ss_pred             ChhhHHH--------hcChHHHHHHHHHHHhhhch
Q 019871          292 DPDLENL--------RASEEFDVLLKRFDESFINE  318 (334)
Q Consensus       292 Dpdl~~L--------r~dp~F~~lL~~~~e~~~~~  318 (334)
                      .-.+..+        .....|..+++.|++.+..+
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            1111000        01235777777787777443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.7e-08  Score=78.61  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC---ChHHHHHHHHHHHHcCCCCHH-HHhcChhh
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAGYEDFK-RVRTDPDL  295 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG---~~eeAl~~lekAIelgp~~~~-~i~~Dpdl  295 (334)
                      ++.+.+...++|++|.+.|+++|.++|++   +.++||+|+|+.+.+   ++++|+..|+++++.+|.+.. .++..-++
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            67788999999999999999999999998   689999999998755   456799999999999886432 23333343


Q ss_pred             HHHhcChHHHHHHHHHHHhh----hchhHHHHHHH
Q 019871          296 ENLRASEEFDVLLKRFDESF----INENAINAIKS  326 (334)
Q Consensus       296 ~~Lr~dp~F~~lL~~~~e~~----~~~~ai~~~k~  326 (334)
                      . ....++|.++++.|++.+    .+..|.+....
T Consensus        81 ~-y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~  114 (122)
T d1nzna_          81 G-NYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  114 (122)
T ss_dssp             H-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             H-HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            3 345678999999999888    33445544433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=9e-08  Score=93.14  Aligned_cols=97  Identities=9%  Similarity=-0.033  Sum_probs=68.9

Q ss_pred             hhchhhhhhhHH--HHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871          187 ERNSGVISNRVR--EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK  264 (334)
Q Consensus       187 ~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~  264 (334)
                      +.+.|.......  +.+...|.+++.+.+. ...+++|.++..+|+|++|+.+|++|++++|++   +.+|+++|.+|..
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~---~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQ-HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN---GQPYNQLAILASS  198 (497)
T ss_dssp             --------------------CCHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---SHHHHHHHHHHHH
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHH
Confidence            444454443332  3344555555555443 234599999999999999999999999999999   5799999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCCCHH
Q 019871          265 LNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       265 lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      .|++.+|+.+|.|||..+|....
T Consensus       199 ~~~~~~A~~~y~ral~~~~~~~~  221 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             TTCHHHHHHHHHHHHSSSBCCHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999987543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=9.3e-07  Score=78.99  Aligned_cols=132  Identities=8%  Similarity=-0.088  Sum_probs=97.9

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc---hhcH-----HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH------H-
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG---ELSE-----KEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERR------E-  216 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~---~l~e-----k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~------~-  216 (334)
                      +..+.|++|..++++..+++...   ++..     ......+.+.|.++..+  ...++..|.+++++.+..      . 
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            45889999999999999887432   2211     11234566677766544  466778888888765432      1 


Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          217 QDLREGLQLYR-TGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       217 ~~~nlG~al~~-~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ...++|..++. .|+|++|+..|++|+++.+....   ...++.++|.+|..+|++++|+..|++++...+..
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            22388888866 69999999999999988654321   24679999999999999999999999999998764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=1.3e-06  Score=74.40  Aligned_cols=59  Identities=10%  Similarity=0.045  Sum_probs=55.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871          219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL  280 (334)
Q Consensus       219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe  280 (334)
                      .+++.++.+.|+|++|+.+++++++++|.+   ..+|++++.+|..+|++.+|+..|+++..
T Consensus        71 ~~la~~~~~~g~~~~Al~~~~~al~~~P~~---e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          71 TAKAEAEIACGRASAVIAELEALTFEHPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            489999999999999999999999999998   57999999999999999999999999843

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=2.4e-06  Score=76.18  Aligned_cols=165  Identities=10%  Similarity=0.005  Sum_probs=107.9

Q ss_pred             HHHhhhhHHHHhhcccchhhhhc-hhc--HHH-----HHHHhhchhhhh---hhHHHHHHHHHHHHHhhccC---H---H
Q 019871          154 IRQRVGPLLMKMQKRYGKMEQTG-ELS--EKE-----IIRAERNSGVIS---NRVREIQMQNYMKKKEQKER---R---E  216 (334)
Q Consensus       154 i~~R~G~V~lkLek~~~aie~~~-~l~--ek~-----~~~a~~n~g~~~---~~l~e~q~~~y~~~iel~~~---~---~  216 (334)
                      .....|.+|.+++++..+++... .+.  .+.     ......+.|.+.   .+-.+.++..|.+++++.+.   .   .
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            34668999999999999887432 111  110     012233444332   13346677788888776432   1   1


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH----
Q 019871          217 Q-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK----  287 (334)
Q Consensus       217 ~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~----  287 (334)
                      . ..++|.++.++|+|++|+..|++++...|.+..    ....+++.+.|+...|+++.|...++++++++|....    
T Consensus       159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~  238 (290)
T d1qqea_         159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES  238 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred             hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence            1 348999999999999999999999999988742    1245789999999999999999999999999986432    


Q ss_pred             HHhcChhhHHHh--cChHHHHHHHHHHHhhhchh
Q 019871          288 RVRTDPDLENLR--ASEEFDVLLKRFDESFINEN  319 (334)
Q Consensus       288 ~i~~Dpdl~~Lr--~dp~F~~lL~~~~e~~~~~~  319 (334)
                      .+..+ -+..+.  ...+|.++|..|++...++.
T Consensus       239 ~~l~~-l~~a~~~~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         239 NFLKS-LIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             HHHHH-HHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHH-HHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence            11111 111121  23468999998887665554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=1.3e-06  Score=78.71  Aligned_cols=86  Identities=7%  Similarity=0.010  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHHHHCCChHHHHHH
Q 019871          199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGK--YEVAREKFESVLGSKPTPEESSVAS-YNVACCYSKLNQVKAGLSA  274 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~--yeeAl~~fekALeldP~~~e~~~a~-yNlA~ay~~lG~~eeAl~~  274 (334)
                      +.++..+.+.++.+|+....+ ++|.++...++  +++|+..++++++++|.+   ..+| +.+|.++...+++++|+.+
T Consensus        90 ~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN---FHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh---hhhhhhHHHHHHHhccccHHHHHH
Confidence            345667777788888876654 78888777665  788899999999888887   4454 5777888888888999999


Q ss_pred             HHHHHHcCCCCHH
Q 019871          275 LEDALLAGYEDFK  287 (334)
Q Consensus       275 lekAIelgp~~~~  287 (334)
                      ++++|+++|.+..
T Consensus       167 ~~~~i~~~p~~~~  179 (334)
T d1dcea1         167 TDSLITRNFSNYS  179 (334)
T ss_dssp             HHTTTTTTCCCHH
T ss_pred             HHHHHHcCCCCHH
Confidence            9999999888766

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=3.8e-08  Score=89.22  Aligned_cols=84  Identities=5%  Similarity=-0.203  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL  279 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI  279 (334)
                      +...|.+.+...|.....+ .+|..+...+++++|+..|.++++.+|.+   ..+|+++|.+|..+|++++|+++|++|+
T Consensus       227 a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~eA~~~~~~ai  303 (334)
T d1dcea1         227 SAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC---LLTIILLMRALDPLLYEKETLQYFSTLK  303 (334)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHHCTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH---HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4566777777777654443 88999999999999999999999999998   6899999999999999999999999999


Q ss_pred             HcCCCCHH
Q 019871          280 LAGYEDFK  287 (334)
Q Consensus       280 elgp~~~~  287 (334)
                      +++|.+..
T Consensus       304 ~ldP~~~~  311 (334)
T d1dcea1         304 AVDPMRAA  311 (334)
T ss_dssp             HHCGGGHH
T ss_pred             HHCcccHH
Confidence            99997544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=4.7e-06  Score=70.70  Aligned_cols=97  Identities=13%  Similarity=0.079  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------cchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------ESSVASYNVACCYSKLNQVKAGLSALE  276 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------e~~~a~yNlA~ay~~lG~~eeAl~~le  276 (334)
                      ...++.|..+...|++++|+..|.+|+++.|...                   ....++.++|.++..+|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4456899999999999999999999999988652                   123688999999999999999999999


Q ss_pred             HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHh
Q 019871          277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDES  314 (334)
Q Consensus       277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~  314 (334)
                      ++|+++|.+-.....  -...+...+++.++++.|++.
T Consensus        92 ~al~~~P~~e~~~~~--l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQ--LITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHSTTCHHHHHH--HHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHH--HHHHHHHhcCHHHHHHHHHHH
Confidence            999999997652211  123455567777777777654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.5e-06  Score=65.93  Aligned_cols=45  Identities=16%  Similarity=0.065  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC
Q 019871          218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL  265 (334)
Q Consensus       218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l  265 (334)
                      ..++|.++++.|+|++|+..|+++|+++|++   ..+++|++.+...+
T Consensus        49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~---~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHhcCChHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHh
Confidence            4599999999999999999999999999999   67999998776544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=4.3e-06  Score=67.92  Aligned_cols=75  Identities=5%  Similarity=0.045  Sum_probs=65.0

Q ss_pred             hccCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          211 QKERREQDLREGLQLYRTGK---YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       211 l~~~~~~~~nlG~al~~~g~---yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      -.+.....|+.|.++.+..+   .++||..++++++.+|.+.  ...||++|.+|.++|++++|+.+++++|+++|++..
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~--rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            44566677899999987654   5699999999999998762  479999999999999999999999999999999865

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1e-06  Score=67.06  Aligned_cols=69  Identities=17%  Similarity=0.297  Sum_probs=51.7

Q ss_pred             EEeecC----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhh
Q 019871           88 EVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (334)
Q Consensus        88 ~v~l~k----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~  160 (334)
                      .|+|.|    |||+.+..+.++++||..|.|||-|+++|.+++||.|+.+    ++.-..-.++..+..++++-.+.
T Consensus         4 ~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~I----Ng~~v~~~~~~~~~~ll~~~~~~   76 (88)
T d1kwaa_           4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREI----NGISVANQTVEQLQKMLREMRGS   76 (88)
T ss_dssp             EEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEE----TTEEGGGSCHHHHHHHHHHCCEE
T ss_pred             EEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEE----CCEECCCCCHHHHHHHHHcCCCc
Confidence            456665    9999998777889999999999999999999999999998    32222223444666666544333

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=5.1e-07  Score=70.80  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=58.3

Q ss_pred             hccceEEEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871           82 EKYEEYEVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus        82 ~~~~~~~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      .+.+-..|+|.   .|+|+.+..+.+ .++||..|.|||.|+++|.+++||.|+.+-    ..-.....+.++...++.-
T Consensus         6 ~~~~~r~V~l~k~~~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~IN----g~~v~~~~~~ev~~~l~~~   81 (102)
T d1tp5a1           6 IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVN----GVDLRNASHEQAAIALKNA   81 (102)
T ss_dssp             CCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEET----TEECTTCCHHHHHHHHHTS
T ss_pred             CCCCCEEEEEEeCCCcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEEC----CeEcCCCCHHHHHHHHHcC
Confidence            34455788886   579999976643 499999999999999999999999999983    2222234445677766654


Q ss_pred             hhhHHHHhhc
Q 019871          158 VGPLLMKMQK  167 (334)
Q Consensus       158 ~G~V~lkLek  167 (334)
                      ...+.+...+
T Consensus        82 ~~~v~L~v~~   91 (102)
T d1tp5a1          82 GQTVTIIAQY   91 (102)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            4444444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.00  E-value=4.9e-06  Score=75.02  Aligned_cols=61  Identities=10%  Similarity=0.009  Sum_probs=48.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871          224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK  287 (334)
Q Consensus       224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~  287 (334)
                      ..++.|++++|+..|+++++.+|++   +.+++++|.+|...|++++|+..|+++++++|++..
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d---~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~   65 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKD---ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   65 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Confidence            4566788888888888888888887   578888888888888888888888888888887544

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1.4e-06  Score=67.33  Aligned_cols=68  Identities=34%  Similarity=0.597  Sum_probs=49.8

Q ss_pred             ceEEEeec---CCcceeEeec----------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHH
Q 019871           85 EEYEVEIE---QPYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~  151 (334)
                      +.|+|+|.   .++|+.+...          .+++|||..|.|||.|+++|.+++||.|+.+-   | .-..-..+.++.
T Consensus         4 ~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VN---g-~~v~~~s~~~a~   79 (99)
T d1ozia_           4 DTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN---G-VSLEGATHKQAV   79 (99)
T ss_dssp             CEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEET---T-EECSSCCHHHHH
T ss_pred             CEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEEC---C-EEcCCCCHHHHH
Confidence            56899997   4789988532          23579999999999999999999999999983   1 111122344566


Q ss_pred             HHHHH
Q 019871          152 YTIRQ  156 (334)
Q Consensus       152 sai~~  156 (334)
                      .+++.
T Consensus        80 ~~lk~   84 (99)
T d1ozia_          80 ETLRN   84 (99)
T ss_dssp             HHHHH
T ss_pred             HHHHC
Confidence            66654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.2e-06  Score=83.10  Aligned_cols=100  Identities=7%  Similarity=-0.133  Sum_probs=56.9

Q ss_pred             hhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871          210 EQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR  288 (334)
Q Consensus       210 el~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~  288 (334)
                      .++|..... .++|..+.+.|++++|+..|++++..+|.     .+++++|.++...|++++|+.+|++|++++|++...
T Consensus       114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~  188 (497)
T d1ya0a1         114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-----HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP  188 (497)
T ss_dssp             -----------------------------CCHHHHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH
T ss_pred             CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHH
Confidence            345554444 49999999999999999999999998886     489999999999999999999999999999997653


Q ss_pred             HhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871          289 VRTDPDLENLRASEEFDVLLKRFDESFI  316 (334)
Q Consensus       289 i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~  316 (334)
                      ...- +.. ....+++.+++..|.+++.
T Consensus       189 ~~~L-g~~-~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         189 YNQL-AIL-ASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHH-HHH-HHHTTCHHHHHHHHHHHHS
T ss_pred             HHHH-HHH-HHHcCCHHHHHHHHHHHHh
Confidence            3222 221 2234677888888888873

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.5e-06  Score=64.43  Aligned_cols=76  Identities=25%  Similarity=0.427  Sum_probs=56.2

Q ss_pred             ceEEEeecC---CcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~k---Plgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      +.|+|+|.|   ++|+.+..+.     +.+|||..|.|+|-|+++|.+++||.|+.|    +..-+.-....++...+++
T Consensus         8 ~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~I----Ng~~v~~~~~~ev~~llk~   83 (110)
T d1um1a_           8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV----NGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEE----SSCBCSSCCHHHHHHHHHT
T ss_pred             CEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEE----CCEECCCCCHHHHHHHHHc
Confidence            469999984   7899996553     337999999999999999999999999998    4333433445577777765


Q ss_pred             hhhhHHHH
Q 019871          157 RVGPLLMK  164 (334)
Q Consensus       157 R~G~V~lk  164 (334)
                      -.+.+.+.
T Consensus        84 ~~~~v~l~   91 (110)
T d1um1a_          84 GGKKMRFL   91 (110)
T ss_dssp             CCSEEEEE
T ss_pred             CCCeEEEE
Confidence            44444333

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=9.5e-07  Score=67.93  Aligned_cols=74  Identities=22%  Similarity=0.396  Sum_probs=51.6

Q ss_pred             ceEEEeec---CCcceeEeec--------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHH
Q 019871           85 EEYEVEIE---QPYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~--------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sa  153 (334)
                      +.|+|+|.   .+||+.+.-+        .+.++||..|.|||.|+++|.+++||.|+.+-   | .-..-.....+..+
T Consensus         2 e~~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VN---g-~~v~~~~~~~~~~~   77 (94)
T d1wf8a1           2 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD---G-ISLVGVTQNFAATV   77 (94)
T ss_dssp             EEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEET---T-EECBSCCHHHHHHH
T ss_pred             eEEEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEEC---C-EECCCCCHHHHHHH
Confidence            56889997   5688988521        23379999999999999999999999999983   1 11112233356666


Q ss_pred             HHHhhhhHH
Q 019871          154 IRQRVGPLL  162 (334)
Q Consensus       154 i~~R~G~V~  162 (334)
                      +++-.+.+.
T Consensus        78 l~~~~~~v~   86 (94)
T d1wf8a1          78 LRNTKGNVR   86 (94)
T ss_dssp             HHHCCSEEE
T ss_pred             HHcCCCeEE
Confidence            665444333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.94  E-value=1.4e-05  Score=71.96  Aligned_cols=103  Identities=11%  Similarity=-0.050  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------------
Q 019871          196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------  249 (334)
Q Consensus       196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------------  249 (334)
                      +-.+.++..|.+.++.+|++.... ++|.+++..|++++|+..|+++++++|++.                         
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~   89 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT   89 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence            334567889999999999997775 999999999999999999999999999972                         


Q ss_pred             -------cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871          250 -------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR  299 (334)
Q Consensus       250 -------e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr  299 (334)
                             .....+...|.++...|++++|+..+++++++.|.... ...+..|+.++
T Consensus        90 ~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~-~~~~~~f~wi~  145 (264)
T d1zbpa1          90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF-LANDTSFSDVR  145 (264)
T ss_dssp             EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE-EETTEEESCEE
T ss_pred             hhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc-cccccCHHHHh
Confidence                   12355677788888889999999999999999887543 23344444444

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=1.7e-06  Score=66.15  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=51.7

Q ss_pred             eEEEeec---CCcceeEeec-------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871           86 EYEVEIE---QPYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus        86 ~~~v~l~---kPlgl~~~~~-------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      ..+|+|.   .+||+.+..+       .+.++||..|.|||-|+++|.+++||.|+.|-    +.-..-.++.++..+++
T Consensus         2 ~~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VN----g~~v~~~s~~e~~~~l~   77 (93)
T d1rgra_           2 YEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN----EVDVREVTHSAAVEALK   77 (93)
T ss_dssp             EEEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEET----TEECSSSCHHHHHHHHH
T ss_pred             CEEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEEC----CEECCCCCHHHHHHHHH
Confidence            4577776   6789998532       34489999999999999999999999999983    22222234456777676


Q ss_pred             HhhhhHH
Q 019871          156 QRVGPLL  162 (334)
Q Consensus       156 ~R~G~V~  162 (334)
                      +-.+.+.
T Consensus        78 ~~~~~v~   84 (93)
T d1rgra_          78 EAGSIVR   84 (93)
T ss_dssp             HTTTEEE
T ss_pred             cCCCEEE
Confidence            5433333

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=1.7e-06  Score=66.75  Aligned_cols=49  Identities=31%  Similarity=0.605  Sum_probs=43.0

Q ss_pred             ceEEEeecC---CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeee
Q 019871           85 EEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        85 ~~~~v~l~k---Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .-|+|+|+|   ++|+++..+.  .+++||..|.|||.|+++|.+++||.|+.+
T Consensus         3 ~i~tV~l~k~~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~I   56 (95)
T d1n7ea_           3 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAI   56 (95)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEE
T ss_pred             EEEEEEEEECCCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEE
Confidence            458899986   8999996443  458999999999999999999999999998

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.3e-07  Score=69.63  Aligned_cols=81  Identities=19%  Similarity=0.380  Sum_probs=58.6

Q ss_pred             ccceEEEeec---CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871           83 KYEEYEVEIE---QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus        83 ~~~~~~v~l~---kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      .++.++|+|.   +++|+.+.-+  .+.++||..|.++|.|++++.+++||.|+.|-    ..-..-..+..+.++++.-
T Consensus         9 ~~e~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~IN----g~~v~~~s~~ev~~~l~~~   84 (103)
T d1wfva_           9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN----GESTRDMTHARAIELIKSG   84 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEET----TEECSSCCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEEC----CEECCCCcHHHHHHHHHcC
Confidence            4678999997   5789999644  34589999999999999999999999999983    2222234445677777654


Q ss_pred             hhhHHHHhhc
Q 019871          158 VGPLLMKMQK  167 (334)
Q Consensus       158 ~G~V~lkLek  167 (334)
                      ...+.+.+.|
T Consensus        85 ~~~v~l~v~R   94 (103)
T d1wfva_          85 GRRVRLLLKR   94 (103)
T ss_dssp             CSEECEEEEC
T ss_pred             CCEEEEEEEE
Confidence            4444444433

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.1e-05  Score=62.96  Aligned_cols=70  Identities=20%  Similarity=0.341  Sum_probs=51.0

Q ss_pred             ccceEEEeec---CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           83 KYEEYEVEIE---QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        83 ~~~~~~v~l~---kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      .+++++|+|.   .++|+.+.-+  .++.+||..|.|+|.|+++|.+++||.|++|-    ..-..-..+.++..+++.
T Consensus         7 ~~~~~~V~l~k~~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VN----g~~v~~~t~~e~~~~l~~   81 (103)
T d1uepa_           7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVD----GIPVAGKTHRYVIDLMHH   81 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEET----TEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEEEeCCceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEEC----CEECCCCCHHHHHHHHHh
Confidence            4577888887   5689999643  34579999999999999999999999999983    111112233456666653

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.7e-06  Score=65.02  Aligned_cols=67  Identities=28%  Similarity=0.504  Sum_probs=48.7

Q ss_pred             EEEeec---CCcceeEeec-------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           87 YEVEIE---QPYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~-------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ++|+|.   +++|+.+.-+       .+.++||..|.|||.|+++|.+++||.|+.+    +..-+.-..+.++..+++.
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~V----Ng~~v~~~~~~e~~~~lk~   78 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV----NNTNLQDVRHEEAVASLKN   78 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEE----TTEECTTCBHHHHHHHHHT
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEe----CCeecCCCCHHHHHHHHHc
Confidence            567775   5688888532       2458999999999999999999999999998    3333323344567676654


Q ss_pred             h
Q 019871          157 R  157 (334)
Q Consensus       157 R  157 (334)
                      -
T Consensus        79 ~   79 (92)
T d2fe5a1          79 T   79 (92)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=4.1e-06  Score=64.84  Aligned_cols=75  Identities=19%  Similarity=0.319  Sum_probs=52.7

Q ss_pred             ceEEEeecC----CcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           85 EEYEVEIEQ----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..|+|+|.|    ++|+.+..+.    +.++||..|.|||.|+++|.+++||.|+.+-    ..-..-..+.++.+.++.
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VN----g~~v~~~s~~e~~~ll~~   85 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAID----NIRLDSCSMEDAVQILQQ   85 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEET----TEEGGGCCHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeC----CEECCCCCHHHHHHHHHc
Confidence            448888873    5999996542    2379999999999999999999999999982    211112234467776665


Q ss_pred             hhhhHHH
Q 019871          157 RVGPLLM  163 (334)
Q Consensus       157 R~G~V~l  163 (334)
                      -.+.+.+
T Consensus        86 ~~~~v~L   92 (99)
T d1p1da2          86 CEDLVKL   92 (99)
T ss_dssp             CTTCEEE
T ss_pred             CCCeEEE
Confidence            4444333

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.80  E-value=3.4e-06  Score=64.60  Aligned_cols=72  Identities=19%  Similarity=0.358  Sum_probs=50.7

Q ss_pred             EEEeecC----CcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHH
Q 019871           87 YEVEIEQ----PYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (334)
Q Consensus        87 ~~v~l~k----Plgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai  154 (334)
                      +.|+|.|    ++|+.+..+.        +.++||..|.|||-|+++|.+++||.|+.+-    ..-+.-.....+...+
T Consensus         5 ~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VN----g~~v~~~~~~~~~~ll   80 (94)
T d1ihja_           5 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN----GKDVRNSTEQAVIDLI   80 (94)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEET----TEECTTCCHHHHHHHH
T ss_pred             EEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEEC----CEECCCCCHHHHHHHH
Confidence            5677764    6999996432        1269999999999999999999999999983    2222233444666666


Q ss_pred             HHhhhhHH
Q 019871          155 RQRVGPLL  162 (334)
Q Consensus       155 ~~R~G~V~  162 (334)
                      ++-.+.+.
T Consensus        81 ~~~~~~v~   88 (94)
T d1ihja_          81 KEADFKIE   88 (94)
T ss_dssp             HHSCSEEE
T ss_pred             HcCCCEEE
Confidence            65444333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=4.7e-05  Score=65.29  Aligned_cols=65  Identities=11%  Similarity=0.006  Sum_probs=55.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e--~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~  284 (334)
                      -+|.+++..|++++|+..|+++++..|++..  ...+++++|.+|..+|++++|+..|++|+++.+.
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            5688899999999999999999999998642  1357899999999999999999999999987553

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.3e-05  Score=60.17  Aligned_cols=64  Identities=22%  Similarity=0.381  Sum_probs=45.9

Q ss_pred             EEeecC----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871           88 EVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus        88 ~v~l~k----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      +|+|.|    ++|+.|+.. ++++||..|.+||-|+++| +++||+|+.+-.    .-....+..++..+++..
T Consensus         5 ~v~l~k~~~~~lG~~l~~~-~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng----~~v~~~~~~~v~~~lk~~   72 (85)
T d1w9ea1           5 EVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVG-LRFGDQVLQING----ENCAGWSSDKAHKVLKQA   72 (85)
T ss_dssp             EEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTT-CCTTCEEEEETT----EECTTCCHHHHHHHHHHC
T ss_pred             EEEEEeCCCCCEeEEEEeC-CCCEEEEEECCCCHHHHcC-CCCccEEEEECC----EEeCCCCHHHHHHHHhcC
Confidence            455554    899999654 6789999999999999999 999999999832    111122334566655543

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.7e-06  Score=63.71  Aligned_cols=73  Identities=21%  Similarity=0.370  Sum_probs=49.3

Q ss_pred             ceEEEeecC--CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871           85 EEYEVEIEQ--PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus        85 ~~~~v~l~k--Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      +-++|+++|  ++|+.+..+.+     .+|||..|.|||.|+++|.+++||.|+.|-    ..-..-..+.++..+++.-
T Consensus         4 ei~~v~l~~~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VN----g~~v~~~s~~ea~~~l~~~   79 (92)
T d1t2ma1           4 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD----GRSLVGLSQERAAELMTRT   79 (92)
T ss_dssp             EEEEEEEECSSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEET----TEECTTCCHHHHHHHHHSC
T ss_pred             eEEEEEEeCCCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeC----CeecCCCCHHHHHHHHHcC
Confidence            456788874  56677744322     279999999999999999999999999983    2222223344566666544


Q ss_pred             hhhH
Q 019871          158 VGPL  161 (334)
Q Consensus       158 ~G~V  161 (334)
                      .+.+
T Consensus        80 ~~~v   83 (92)
T d1t2ma1          80 SSVV   83 (92)
T ss_dssp             CSEE
T ss_pred             CCeE
Confidence            3333

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=3.8e-06  Score=64.14  Aligned_cols=50  Identities=26%  Similarity=0.395  Sum_probs=41.7

Q ss_pred             ceEEEeecC----CcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +.-+|+|.|    |+|+.+..+  ++.++||..|.|+|-|+++|.+++||.|+.+-
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~IN   59 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVN   59 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEET
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEEC
Confidence            345677764    699999754  44589999999999999999999999999983

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=2.9e-05  Score=60.76  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=50.1

Q ss_pred             eEEEeecC----CcceeEeec-CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhh
Q 019871           86 EYEVEIEQ----PYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (334)
Q Consensus        86 ~~~v~l~k----Plgl~~~~~-~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G  159 (334)
                      .++|+|-|    .+|+.+..+ +++++||..|.+||-|+++|.+++||.|+.+-    ..-..-..+.++..+++.-.+
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~IN----g~~v~~~s~~e~~~~l~~~~~   76 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN----DRPLVDLSYDSALEVLRGIAS   76 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEET----TEECTTSCHHHHHHHHHHSCS
T ss_pred             eEEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEEC----CcCccCCCHHHHHHHHHcCCC
Confidence            35677753    588999766 34589999999999999999999999999983    221112234466666665433

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.5e-05  Score=60.98  Aligned_cols=79  Identities=20%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             ceEEEeec---CCcceeEeec-----CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           85 EEYEVEIE---QPYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ..+.|+|+   .+||+.+.-+     .+.++||..|.|||.|+++|.+++||.|+.|    +..-+....+.++..+++.
T Consensus        29 ~~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~V----Ng~~~~~~t~~eav~~l~~  104 (130)
T d1i16a_          29 TVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQL----GGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             EEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEEC----SSCBGGGSCHHHHHHHHHT
T ss_pred             eEEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeE----CCeecCCCcHHHHHHHHHc
Confidence            45778887   4699999643     2358999999999999999999999999998    3333434445567777764


Q ss_pred             h-hhhHHHHhhc
Q 019871          157 R-VGPLLMKMQK  167 (334)
Q Consensus       157 R-~G~V~lkLek  167 (334)
                      - .+.+.+...|
T Consensus       105 ~~~~~v~l~v~r  116 (130)
T d1i16a_         105 LPDGPVTIVIRR  116 (130)
T ss_dssp             SCSSEEEEEEEE
T ss_pred             CCCCeEEEEEEc
Confidence            2 3455555444

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.5e-05  Score=58.90  Aligned_cols=60  Identities=17%  Similarity=0.292  Sum_probs=44.4

Q ss_pred             CCcceeEeecCC----CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           93 QPYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        93 kPlgl~~~~~~~----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      .+||+.+..+.+    +++||..|.|||.|+++|.+++||.|+.+    ++.-..-..+.++..++++
T Consensus        10 ~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~V----Ng~~v~~~s~~e~~~~l~~   73 (85)
T d1x45a1          10 EILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSI----NGTSLVGLPLSTCQSIIKG   73 (85)
T ss_dssp             SCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEE----TTEECTTCCHHHHHHHHHT
T ss_pred             CccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEE----CCEECCCCCHHHHHHHHHc
Confidence            489999965432    37999999999999999999999999998    3232223344466665553

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.2e-05  Score=62.50  Aligned_cols=47  Identities=28%  Similarity=0.692  Sum_probs=41.6

Q ss_pred             EEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      -.|+|.   .|+|+.+..++++++||..|.|+|-|++++ +++||.|+.+-
T Consensus        21 r~v~l~k~~~glG~~i~gg~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~IN   70 (117)
T d1uita_          21 RHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFN   70 (117)
T ss_dssp             EEEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEET
T ss_pred             EEEEEEeCCCccCEEEEccCCCCEEEEEEecCChHHhCC-CCCCCEeeeEC
Confidence            466676   489999988889999999999999999887 99999999983

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=8.6e-06  Score=62.16  Aligned_cols=50  Identities=28%  Similarity=0.538  Sum_probs=42.0

Q ss_pred             ccceEEEeecC-----CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeee
Q 019871           83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        83 ~~~~~~v~l~k-----Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +.+..+|+|.|     .+|+.+..+. +.++||..|.+||-|+++| +++||+|+.+
T Consensus         4 p~e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~g-L~~GD~Il~V   59 (91)
T d1m5za_           4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQV   59 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCc-CCCCCEEEEE
Confidence            44667777774     5899987653 5599999999999999999 9999999998

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.5e-05  Score=60.37  Aligned_cols=69  Identities=16%  Similarity=0.345  Sum_probs=51.6

Q ss_pred             ceEEEeecC---CcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           85 EEYEVEIEQ---PYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~k---Plgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      +.++|+|.|   ++|+.+..+.     +.++||..|.++|.|++++.+++||.|+.+    +..-+......++..++++
T Consensus         2 ~~~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~I----Ng~~v~~~~~~~v~~~l~~   77 (88)
T d2fnea1           2 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAV----NGQSLEGVTHEEAVAILKR   77 (88)
T ss_dssp             EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEE----TTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEE----CCEECCCCCHHHHHHHHHc
Confidence            357888875   7999996431     237999999999999999999999999998    4444434444566666654


Q ss_pred             h
Q 019871          157 R  157 (334)
Q Consensus       157 R  157 (334)
                      -
T Consensus        78 ~   78 (88)
T d2fnea1          78 T   78 (88)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.68  E-value=1.5e-05  Score=60.89  Aligned_cols=48  Identities=29%  Similarity=0.541  Sum_probs=40.5

Q ss_pred             EEEeecC----CcceeEeec----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIEQ----PYGLKFAKG----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~k----Plgl~~~~~----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      .+|+|.|    +||+.+.-+    .++++||..|.|||.|+++|.+++||.|+++-
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VN   58 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVN   58 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEET
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEEC
Confidence            4677774    599999643    35699999999999999999999999999983

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=63.20  Aligned_cols=73  Identities=16%  Similarity=0.366  Sum_probs=51.4

Q ss_pred             ceEEEeec---CCcceeEeec----------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHH
Q 019871           85 EEYEVEIE---QPYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~  151 (334)
                      +.++|+|.   .+||+.+.-+          .+.+|||..|.|+|.|+++|.+++||+|+.+-    ..-..-..+.++.
T Consensus         8 ~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VN----g~~v~~~t~~eav   83 (107)
T d1uhpa_           8 KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVN----GRDLSRATHDQAV   83 (107)
T ss_dssp             EEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEET----TEECTTCCHHHHH
T ss_pred             CEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEEC----CEECCCCCHHHHH
Confidence            56889997   4588998532          34589999999999999999999999999982    2222223344566


Q ss_pred             HHHHHhhhhH
Q 019871          152 YTIRQRVGPL  161 (334)
Q Consensus       152 sai~~R~G~V  161 (334)
                      .+++.-...+
T Consensus        84 ~~lk~~~~~v   93 (107)
T d1uhpa_          84 EAFKTAKEPI   93 (107)
T ss_dssp             HHHHHCCSSE
T ss_pred             HHHHhCCCcE
Confidence            6665433333

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=3.9e-06  Score=63.30  Aligned_cols=65  Identities=23%  Similarity=0.378  Sum_probs=46.9

Q ss_pred             EEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           87 YEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        87 ~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      |+|++.  .|+|+.+.-+.  +.++||..|.||+-|++++ +++||.|+.+-    .+-..-.++.++...++.
T Consensus         3 ~~V~l~~~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VN----g~~v~~~s~~ev~~~i~~   71 (85)
T d1rgwa_           3 YSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAID----GVNTDTMTHLEAQNKIKS   71 (85)
T ss_dssp             EEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEET----TEECTTCCHHHHHHHHTT
T ss_pred             EEEEecCCCCCCEEEEeecCCCCCEEEEEecCCChHHhCC-CCCCCEEEEEC----CEECCCCCHHHHHHHHHc
Confidence            788888  78899996443  3479999999999999876 99999999983    222222334456665543

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=6.1e-05  Score=59.72  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=53.2

Q ss_pred             EEEeecC----CcceeEeecC---CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhh
Q 019871           87 YEVEIEQ----PYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (334)
Q Consensus        87 ~~v~l~k----Plgl~~~~~~---~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G  159 (334)
                      +.|+|.|    +|||.+..+.   ..++||..|.|+|.|+++|.+++||.|+++    +..-..-..+.++...+++-.+
T Consensus        17 ~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~V----Ng~~v~~~~~~~v~~~l~~~~~   92 (117)
T d1v62a_          17 LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI----DGTSMEHCSLLEATKLLASISE   92 (117)
T ss_dssp             EEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEE----TTEETTSCCHHHHHHHHHSCSS
T ss_pred             EEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeE----CCEecCCCCHHHHHHHHHcCCC
Confidence            6677764    6999997553   348999999999999999999999999998    3222223344467776665444


Q ss_pred             hHHHHh
Q 019871          160 PLLMKM  165 (334)
Q Consensus       160 ~V~lkL  165 (334)
                      .+.++.
T Consensus        93 ~v~l~v   98 (117)
T d1v62a_          93 KVRLEI   98 (117)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            444433

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.5e-05  Score=62.32  Aligned_cols=76  Identities=24%  Similarity=0.383  Sum_probs=51.4

Q ss_pred             ceEEEeec---CCcceeEeec--------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHH
Q 019871           85 EEYEVEIE---QPYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYT  153 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~--------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sa  153 (334)
                      ....|.|.   +++|+.+.-+        .+.++||..|.|+|.|+++|.+++||.|+.|-    ..-..-..+.++..+
T Consensus         7 ~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~IN----g~~v~~~~~~ev~~~   82 (105)
T d1whaa_           7 GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN----GVDVTEARHDHAVSL   82 (105)
T ss_dssp             EEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEES----SCBCTTCCHHHHHHH
T ss_pred             CCEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEEC----CEEcCCCcHHHHHHH
Confidence            34667776   5799999532        34589999999999999999999999999983    221222334456666


Q ss_pred             HHHhhhhHHHH
Q 019871          154 IRQRVGPLLMK  164 (334)
Q Consensus       154 i~~R~G~V~lk  164 (334)
                      ++.-.+.+.+.
T Consensus        83 l~~~~~~v~l~   93 (105)
T d1whaa_          83 LTAASPTIALL   93 (105)
T ss_dssp             HTSCCSCEEEE
T ss_pred             HHcCCCeEEEE
Confidence            55433334333

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=5.2e-05  Score=61.27  Aligned_cols=49  Identities=27%  Similarity=0.502  Sum_probs=40.4

Q ss_pred             ceEEEeecC----CcceeEeec------CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           85 EEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      ..++|+|.|    +||+.+.-+      .+.++||..|.|||.|+++|.+++||.|+.|
T Consensus        25 ~~~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~V   83 (127)
T d1wg6a_          25 LTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV   83 (127)
T ss_dssp             EEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEE
T ss_pred             EEEEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeE
Confidence            346777764    499999632      2348999999999999999999999999998

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00015  Score=62.07  Aligned_cols=89  Identities=7%  Similarity=-0.125  Sum_probs=71.6

Q ss_pred             hhhHHHHHHHHHHHHHhhccCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHH
Q 019871          194 SNRVREIQMQNYMKKKEQKERRE------QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSK  264 (334)
Q Consensus       194 ~~~l~e~q~~~y~~~iel~~~~~------~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~  264 (334)
                      ..+-.+.++..|.+++++.|...      ....+|.+++..|+|++|+..|++++++.|....   ...++++++.+|..
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            33444566777888888877642      2348999999999999999999999988765431   24678999999999


Q ss_pred             CCChHHHHHHHHHHHHcC
Q 019871          265 LNQVKAGLSALEDALLAG  282 (334)
Q Consensus       265 lG~~eeAl~~lekAIelg  282 (334)
                      .|++..|+..+.+++.+.
T Consensus       104 ~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998864

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00012  Score=58.43  Aligned_cols=62  Identities=21%  Similarity=0.351  Sum_probs=45.8

Q ss_pred             cCCcceeEeecC---CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871           92 EQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus        92 ~kPlgl~~~~~~---~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      ..++|+.+.-+.   .|+|||..|.|||.|+++|.+++||.|+.|-    +.-..-....++..+++.-
T Consensus        27 ~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VN----g~~v~~~s~~e~~~~l~~~   91 (118)
T d1v6ba_          27 EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN----GKIVTDYTLAEAEAALQKA   91 (118)
T ss_dssp             CSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEES----SCBCTTCBHHHHHHHHHHH
T ss_pred             CCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeEC----CEECCCCcHHHHHHHHHhc
Confidence            469999997653   3689999999999999999999999999983    2222123344566666543

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00014  Score=56.27  Aligned_cols=59  Identities=15%  Similarity=0.418  Sum_probs=45.7

Q ss_pred             CCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           93 QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        93 kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      +++|+.+.-+.++  ++||..|.+||-|++++ +++||.|+.|    +++-+.-....++...++.
T Consensus        20 ~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~V----Ng~~v~~~~~~~v~~~lk~   80 (101)
T d1x5na1          20 RGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEV----NGVDFSNLDHKEAVNVLKS   80 (101)
T ss_dssp             CCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEE----TTEETTSCCTTHHHHHHHH
T ss_pred             CcccEEEeccCCCCCCEEEEEECCCChHHhCC-CCcccEEEEE----CCEECCCCCHHHHHHHHhC
Confidence            7899999766554  89999999999999988 9999999998    3333333445567776654

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.6e-05  Score=59.68  Aligned_cols=63  Identities=22%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhh
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~  160 (334)
                      .|+|+++. +.++++||..|.|||-|+++|.+++||.|+.+-.    .-.....+.++...++.-.+.
T Consensus        30 ~~lG~~v~-~~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg----~~v~~~~~~~~~~ll~~~~~~   92 (100)
T d1va8a1          30 IPLGATVR-NEMDSVIISRIVKGGAAEKSGLLHEGDEVLEING----IEIRGKDVNEVFDLLSDMHGT   92 (100)
T ss_dssp             CCCCEEEE-ECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETT----EECTTCCHHHHHHHHHHCCEE
T ss_pred             CCccEEEE-ecCCCEEEEEECCCChhhhhcccCccCEEEEECC----EEEcCCCHHHHHHHHHcCCCe
Confidence            58999995 4567899999999999999999999999999842    222223344666666654443

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=1.9e-05  Score=60.52  Aligned_cols=47  Identities=23%  Similarity=0.469  Sum_probs=35.8

Q ss_pred             EEEeec----CCcceeEeec-----------CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           87 YEVEIE----QPYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        87 ~~v~l~----kPlgl~~~~~-----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .+|+|.    .++|+.+.-+           ...++||..|.|+|.|+++|.+++||.|+++
T Consensus         3 r~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~V   64 (96)
T d2fcfa1           3 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV   64 (96)
T ss_dssp             EEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEE
T ss_pred             EEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEE
Confidence            456665    3578887422           1238999999999999999999999999998

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.46  E-value=0.00031  Score=60.30  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHHHHHHcCCC
Q 019871          216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGYE  284 (334)
Q Consensus       216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~lekAIelgp~  284 (334)
                      ...+++|..+++.++|++|+++|++|.+.+  +   ..+++++|.+|..    ..++..|+.+++++.+.+..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~   70 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS   70 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc
Confidence            455678888888888888888888887653  3   4678888888776    55777788888887777654

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00017  Score=57.77  Aligned_cols=50  Identities=18%  Similarity=0.357  Sum_probs=42.9

Q ss_pred             cceEEEeec---CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           84 YEEYEVEIE---QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        84 ~~~~~v~l~---kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      -+.++|+|.   .++|+.+.-+  .++++||..|.++|.|++++.+++||.|+.|
T Consensus        18 ~~~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~I   72 (123)
T d1ueqa_          18 GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI   72 (123)
T ss_dssp             SEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred             CeEEEEEEEECCCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEE
Confidence            356788876   6889999664  3568999999999999999999999999998

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=9.6e-05  Score=59.63  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=53.8

Q ss_pred             ceEEEeecC-C--cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh--h
Q 019871           85 EEYEVEIEQ-P--YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV--G  159 (334)
Q Consensus        85 ~~~~v~l~k-P--lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~--G  159 (334)
                      +.+.|+|.| +  +|+.+.. .+.++||..|.|+|.|+++|.|++||+|+.|-    +.-.....+..+..+++...  .
T Consensus        27 ~~~~v~l~~g~~GlG~~i~~-~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~In----g~~v~~~~~~e~~~llr~~~~g~  101 (126)
T d1wifa_          27 KVIQTKLTVGNLGLGLVVIQ-NGPYLQISHLINKGAAASDGILQPGDVLISVG----HANVLGYTLREFLKLLQNITIGT  101 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEE-ETTEEEECCCCTTSSGGGCSSSCTTCBEEEES----SSCCTTCCHHHHHHHHTSCCSSC
T ss_pred             cEEEEEEeeCCCcEEEEEEe-cCCcEEEEEECCCChHHHcCCCCCCCEEEEEC----CEEeEeccHHHHHHHHhCCCCCC
Confidence            568888875 4  5555544 34579999999999999999999999999983    22222233446666666432  3


Q ss_pred             hHHHHhhccc
Q 019871          160 PLLMKMQKRY  169 (334)
Q Consensus       160 ~V~lkLek~~  169 (334)
                      .|.+...|..
T Consensus       102 ~v~L~v~R~~  111 (126)
T d1wifa_         102 VLQIKAYRGF  111 (126)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEEEeCC
Confidence            4555555443

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=7e-05  Score=57.67  Aligned_cols=60  Identities=23%  Similarity=0.465  Sum_probs=43.0

Q ss_pred             CCcceeEeecC-----------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           93 QPYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        93 kPlgl~~~~~~-----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      +|||+.+..+.           +.++||..|.|||.|+++|.+++||.|+.+-    ..-..-.++..+...++.
T Consensus        15 ~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VN----g~~v~~~~~~~~~~~l~~   85 (98)
T d1rzxa_          15 KPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVN----GIEVAGKTLDQVTDMMVA   85 (98)
T ss_dssp             SCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEET----TEECTTCCHHHHHHHHHH
T ss_pred             CcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeEC----CEECCCCCHHHHHHHHHc
Confidence            58999986432           2379999999999999999999999999983    222222234456565553

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00014  Score=55.72  Aligned_cols=48  Identities=27%  Similarity=0.505  Sum_probs=38.8

Q ss_pred             EEEeec--CCcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           87 YEVEIE--QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        87 ~~v~l~--kPlgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..|++.  .++|+.+.-+.    +.+|||..|.|||.|+++|.+++||.|+.+-
T Consensus        10 ~~v~~~~~~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VN   63 (96)
T d1wi4a1          10 RVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN   63 (96)
T ss_dssp             EEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEET
T ss_pred             EEEEecCCCccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEEC
Confidence            445555  67888886432    3489999999999999999999999999983

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0001  Score=57.48  Aligned_cols=69  Identities=19%  Similarity=0.271  Sum_probs=49.1

Q ss_pred             eEEEeec----CCcceeEeec---CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh
Q 019871           86 EYEVEIE----QPYGLKFAKG---RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV  158 (334)
Q Consensus        86 ~~~v~l~----kPlgl~~~~~---~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~  158 (334)
                      .+.|.|.    .++|+.+.-+   .++++||..|.|||.|+++|.+++||.|++|-    ..-........+...++.-.
T Consensus         9 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VN----g~~v~~~~~~ea~~~l~~~~   84 (107)
T d1x6da1           9 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSIN----GKSLKGTTHHDALAILRQAR   84 (107)
T ss_dssp             EEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEET----TEECSSCCHHHHHHHHHHTT
T ss_pred             cEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEEC----CEecCCCCHHHHHHHHHcCC
Confidence            3556664    4689999643   35699999999999999999999999999983    22222223445666665433

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0003  Score=55.07  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             cceEEEeecC----CcceeEeecC---------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhH
Q 019871           84 YEEYEVEIEQ----PYGLKFAKGR---------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRT  150 (334)
Q Consensus        84 ~~~~~v~l~k----Plgl~~~~~~---------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v  150 (334)
                      ++.++|+|.|    ++|+++.-+.         ..++||..|.|||-|+++|.+++||.|+.|    +..-..-.+...+
T Consensus         9 ~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~V----Ng~~v~~~~~~ev   84 (114)
T d1uewa_           9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV----NGQSIINMPHADI   84 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEE----TTBCTTTSCHHHH
T ss_pred             ceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEe----CCcccCCCcHHHH
Confidence            4668888863    5888885432         236999999999999999999999999998    3222222333466


Q ss_pred             HHHHHHhhhhHHH
Q 019871          151 MYTIRQRVGPLLM  163 (334)
Q Consensus       151 ~sai~~R~G~V~l  163 (334)
                      ..+++.-.+.+.+
T Consensus        85 ~~ll~~~~~~v~l   97 (114)
T d1uewa_          85 VKLIKDAGLSVTL   97 (114)
T ss_dssp             HHHHHHTTTEEEE
T ss_pred             HHHHHcCCCeEEE
Confidence            6766643333333

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00016  Score=55.58  Aligned_cols=70  Identities=24%  Similarity=0.372  Sum_probs=49.9

Q ss_pred             ccceEEEeec----CCcceeEeec------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHH
Q 019871           83 KYEEYEVEIE----QPYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (334)
Q Consensus        83 ~~~~~~v~l~----kPlgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~s  152 (334)
                      ..+.++|+|.    .++|+.+.-+      ...++||..|.++|.|+++|.+++||.|+++=    ..-..-..+.++..
T Consensus         6 ~~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~IN----g~~v~~~t~~e~~~   81 (99)
T d1x5ra1           6 HTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSIN----GIATEDGTMEEANQ   81 (99)
T ss_dssp             SSEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEET----TEESTTSBHHHHHH
T ss_pred             eeeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC----CEECCCCCHHHHHH
Confidence            3466778875    4799999532      34489999999999999999999999999983    22222233445666


Q ss_pred             HHHH
Q 019871          153 TIRQ  156 (334)
Q Consensus       153 ai~~  156 (334)
                      .+++
T Consensus        82 ~lr~   85 (99)
T d1x5ra1          82 LLRD   85 (99)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5553

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00011  Score=58.82  Aligned_cols=49  Identities=33%  Similarity=0.514  Sum_probs=40.7

Q ss_pred             ceEEEeecC-----CcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeee
Q 019871           85 EEYEVEIEQ-----PYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        85 ~~~~v~l~k-----Plgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +..+|+|.|     .||+.+..+.    +.+|||..|.|||-|++++.+++||.|+.+
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~I   76 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQI   76 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEE
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEE
Confidence            445677765     5899996543    348999999999999999999999999998

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=2.6e-05  Score=59.68  Aligned_cols=75  Identities=21%  Similarity=0.395  Sum_probs=51.4

Q ss_pred             ceEEEeec--CCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhh
Q 019871           85 EEYEVEIE--QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGP  160 (334)
Q Consensus        85 ~~~~v~l~--kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~  160 (334)
                      ..++|++.  .|+|+++.-+.|.  .+||..|.|++-|++++ +++||.|+.|-    .+-..-....++...++.-.+.
T Consensus         6 ~~~tv~~~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VN----g~~v~~~~~~~~~~~l~~~~~~   80 (94)
T d1vb7a_           6 SGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAIN----GQSAENMLHAEAQSKIRQSASP   80 (94)
T ss_dssp             CCEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEET----TEECTTCCHHHHHHHHHTCCSS
T ss_pred             ceEEEEEECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCC-CCCCCEEEEEC----CEECCCCCHHHHHHHHHcCCCe
Confidence            34667776  7999999766543  78999999999999977 99999999983    2222222333566666543343


Q ss_pred             HHHH
Q 019871          161 LLMK  164 (334)
Q Consensus       161 V~lk  164 (334)
                      +.+.
T Consensus        81 v~L~   84 (94)
T d1vb7a_          81 LRLQ   84 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            3333

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00012  Score=55.94  Aligned_cols=48  Identities=35%  Similarity=0.654  Sum_probs=40.0

Q ss_pred             ceEEEeecC---CcceeEeec--------CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           85 EEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        85 ~~~~v~l~k---Plgl~~~~~--------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      ++++|+|.|   ++|+.+.-+        .+.+|||..|.|||-|+++| +++||.|+.+
T Consensus         8 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~V   66 (97)
T d1x5qa1           8 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV   66 (97)
T ss_dssp             EEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             eEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEE
Confidence            667888884   488888533        23379999999999999999 9999999998

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3e-05  Score=61.72  Aligned_cols=64  Identities=33%  Similarity=0.527  Sum_probs=44.5

Q ss_pred             CcceeEeec-----CCC--ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhH
Q 019871           94 PYGLKFAKG-----RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL  161 (334)
Q Consensus        94 Plgl~~~~~-----~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V  161 (334)
                      .||+.+.-+     .+|  ++||..|.|+|-|+++|.+++||.|+.|    ++.-+.-..+..+..+++.-.+.+
T Consensus        31 glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~I----Ng~~v~~~s~~e~~~~i~~~~~~v  101 (117)
T d1ujda_          31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW----NGIPLTSKTYEEVQSIISQQSGEA  101 (117)
T ss_dssp             SCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEE----TTEECTTCCHHHHHHHHSCCSSCE
T ss_pred             ccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEE----CCEECCCCcHHHHHHHHHcCCCeE
Confidence            389998532     223  7999999999999999999999999998    333232334446666555433333

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00033  Score=54.21  Aligned_cols=67  Identities=22%  Similarity=0.428  Sum_probs=47.0

Q ss_pred             ceEEEeecC----CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ....|+|.|    ++|+.+..+.  +-+|||..|.++|.|+++| +++||.|++|-    ..-.......++...+++
T Consensus        15 ~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VN----g~~v~~~~~~ev~~llk~   87 (104)
T d1wi2a_          15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVN----DVDFQDIEHSKAVEILKT   87 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEET----TEECSSCCHHHHHHHHHH
T ss_pred             cCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcc-cccCCEEEEEC----CEECCCCCHHHHHHHHhc
Confidence            345677764    5889986443  3489999999999999999 99999999983    211112234456666643

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=6.7e-05  Score=57.08  Aligned_cols=60  Identities=25%  Similarity=0.455  Sum_probs=43.6

Q ss_pred             CCcceeEeec-CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871           93 QPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus        93 kPlgl~~~~~-~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      .++|+.+..+ .+.++||..|.|||.|+++| +++||.|+.+-    ..-...-+..++.+.++.-
T Consensus        14 ~g~Gf~i~~~~~~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VN----g~~v~~~t~~e~~~ll~~~   74 (91)
T d1g9oa_          14 NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVN----GENVEKETHQQVVSRIRAA   74 (91)
T ss_dssp             TBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEET----TEECTTCCHHHHHHHHHTC
T ss_pred             CeeeEEEEecCCCCCEEEEEEcCCCHHHHcC-CCCCCEEEEEC----CEECCCCCHHHHHHHHHcC
Confidence            6789999655 34589999999999999999 99999999982    2222222333566666543

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00013  Score=58.40  Aligned_cols=79  Identities=19%  Similarity=0.327  Sum_probs=54.0

Q ss_pred             ccceEEEeecC-C---cceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHH
Q 019871           83 KYEEYEVEIEQ-P---YGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMY  152 (334)
Q Consensus        83 ~~~~~~v~l~k-P---lgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~s  152 (334)
                      ..+..+|+|.| |   +|+.+.-+.      ..++||..|.|+|-|+++|.+++||.|+.+-    ..-..-..+.++.+
T Consensus        13 ~~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~IN----g~~v~~~~~~e~~~   88 (122)
T d1v5qa_          13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN----GIPTEDSTFEEANQ   88 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEET----TEESSSSCHHHHHH
T ss_pred             cceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEEC----CCcCCCCCHHHHHH
Confidence            44778999974 4   889886432      2369999999999999999999999999982    21111223345666


Q ss_pred             HHHHhhhhHHHHh
Q 019871          153 TIRQRVGPLLMKM  165 (334)
Q Consensus       153 ai~~R~G~V~lkL  165 (334)
                      +++.-...+.+.+
T Consensus        89 ~lk~~~~~~~l~l  101 (122)
T d1v5qa_          89 LLRDSSITSKVTL  101 (122)
T ss_dssp             HHHHHTTTTCEEE
T ss_pred             HHHcCCCceEEEE
Confidence            6665444333333

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0004  Score=53.90  Aligned_cols=68  Identities=16%  Similarity=0.259  Sum_probs=47.7

Q ss_pred             ceEEEeecC----CcceeEeecC--CCceEEEeeCCCCccccc-cccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKT-GMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~-~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      +...|+|.|    ++|+.+.-+.  +.++||..|.|||.|+++ +.+++||.|+.|-    ..-..-..+.++...+++
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VN----g~~v~~~~~~e~~~ll~~   82 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLIN----GRDIAEHTHDQVVLFIKA   82 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEET----TBCTTSSCHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEEC----CEECCCCCHHHHHHHHHh
Confidence            446777764    5999996553  347999999999999995 6799999999983    222222333456665553

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00033  Score=56.39  Aligned_cols=66  Identities=24%  Similarity=0.507  Sum_probs=47.4

Q ss_pred             ceEEEeec----CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871           85 EEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus        85 ~~~~v~l~----kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      +++.|+|.    .++|+.+.-+.+  -+|||..|.|||.|++++ +++||+|+.|-    ..-..--.+.++...|+
T Consensus        20 ~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~g-L~~GD~Il~IN----g~~v~~~s~~evv~~lr   91 (128)
T d1uf1a_          20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVN----GRSFLNILHDEAVRLLK   91 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEET----TEECSSCCHHHHHHHHT
T ss_pred             CeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcC-CCCCCEEEEEC----CEECCCCCHHHHHHHHh
Confidence            45777775    478999964433  389999999999999999 99999999983    22221223346666664

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.19  E-value=0.00054  Score=58.71  Aligned_cols=68  Identities=9%  Similarity=0.108  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHHHHHHcCCCC
Q 019871          214 RREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       214 ~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~lekAIelgp~~  285 (334)
                      +....+++|..++.    ..++++|+..|+++.+...     +.++|++|.+|..    ..++++|+++|++|++.|...
T Consensus       177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             ccccccchhhhcccCcccccchhhhhhhHhhhhcccC-----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            34455688988887    6789999999999988743     4689999998886    337888999999999988764


Q ss_pred             H
Q 019871          286 F  286 (334)
Q Consensus       286 ~  286 (334)
                      .
T Consensus       252 A  252 (265)
T d1ouva_         252 A  252 (265)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00021  Score=55.42  Aligned_cols=47  Identities=28%  Similarity=0.432  Sum_probs=39.2

Q ss_pred             EEEeec---CCcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeee
Q 019871           87 YEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        87 ~~v~l~---kPlgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      ..|.|+   .+||+.+.-+.+   ..+||..|.|+|.|+++|.+++||.|++|
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~V   60 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV   60 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEE
T ss_pred             EEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEE
Confidence            346666   479999965432   36999999999999999999999999998

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00022  Score=55.69  Aligned_cols=60  Identities=28%  Similarity=0.422  Sum_probs=45.1

Q ss_pred             CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           93 QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        93 kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      .+||+.+.-+.     +.++||..|.|||.|+++|.+++||.|+.+    +..-+.-..+.++...++.
T Consensus        30 ~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~V----Ng~~~~~~t~~ea~~~l~~   94 (108)
T d2cssa1          30 ALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEW----NGKPLPGATNEEVYNIILE   94 (108)
T ss_dssp             SCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEE----SSCBCTTSCHHHHHHHHHH
T ss_pred             CCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEE----CCEECCCCCHHHHHHHHHh
Confidence            46999995432     228999999999999999999999999998    3333334455566666653

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00022  Score=55.35  Aligned_cols=51  Identities=31%  Similarity=0.595  Sum_probs=40.2

Q ss_pred             hhccceEEEeec--CCcceeEeecC----------CCceEEEeeCCCCccccccccccCcEeeee
Q 019871           81 EEKYEEYEVEIE--QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        81 ~~~~~~~~v~l~--kPlgl~~~~~~----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +...++..|+++  ..||+.+.-+.          +.+|||..|.|+|.|+++  +++||.|+++
T Consensus         7 ~~~~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~--L~~GD~Il~V   69 (103)
T d2h3la1           7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQA   69 (103)
T ss_dssp             CCEEEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTT--CCTTCEEEEE
T ss_pred             ccccEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhc--cCCCCEEEEE
Confidence            345566778877  45788886442          358999999999999864  8999999998

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.00057  Score=52.45  Aligned_cols=48  Identities=21%  Similarity=0.461  Sum_probs=38.6

Q ss_pred             ceEEEeecC----CcceeEeec--------------CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           85 EEYEVEIEQ----PYGLKFAKG--------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~--------------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      ++.+|.|.|    ++|+.+.-+              ..+++||..|.|||.|+++| +++||.|+.+
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~I   70 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEV   70 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEE
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            466777764    678877432              22368999999999999999 9999999998

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.0038  Score=55.06  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=31.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871          220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED  285 (334)
Q Consensus       220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~  285 (334)
                      ..+..+...|++++|...|+++++..|.+.  ..+|...+......|+++.|.+.|++|++..|..
T Consensus       104 ~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         104 AYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            444444455555555555555555554432  2344444444445555555555555555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.97  E-value=0.0013  Score=51.72  Aligned_cols=81  Identities=15%  Similarity=0.042  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHH
Q 019871          199 EIQMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKA  270 (334)
Q Consensus       199 e~q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~ee  270 (334)
                      +.+..-|.++.+.. .....+++|..++.    ..++++|++.|+++.+...     +.+.+++|.+|..    ..+.++
T Consensus        40 ~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          40 QKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND-----QDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc-----chHHHHHHHHHHcCCccCCCHHH
Confidence            33445555555432 33445799998876    5789999999999998643     4699999999987    458999


Q ss_pred             HHHHHHHHHHcCCCC
Q 019871          271 GLSALEDALLAGYED  285 (334)
Q Consensus       271 Al~~lekAIelgp~~  285 (334)
                      |+.+|++|.++|...
T Consensus       114 A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_         114 AVKTFEKACRLGSED  128 (133)
T ss_dssp             HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCCCHH
Confidence            999999999998763

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.96  E-value=0.00067  Score=50.60  Aligned_cols=38  Identities=26%  Similarity=0.473  Sum_probs=33.1

Q ss_pred             cceeEeecCCC-ceEEEeeCCCCccccccccccCcEeeee
Q 019871           95 YGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        95 lgl~~~~~~~g-~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      ||+.+....+. |++|..|.|++.|+++| |++||+|+.+
T Consensus         5 LGv~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~i   43 (88)
T d2z9ia1           5 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKV   43 (88)
T ss_dssp             CCEEEECCC-CCSEEEEEECTTSTTGGGT-CCTTCEEEEE
T ss_pred             EeEEEEecCCCCcEEEEEECCCCHHHHcC-CCCCCEEEEe
Confidence            68888665444 89999999999999999 9999999998

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00095  Score=51.45  Aligned_cols=68  Identities=25%  Similarity=0.520  Sum_probs=47.9

Q ss_pred             cceEEEeecC----CcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHH
Q 019871           84 YEEYEVEIEQ----PYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTM  151 (334)
Q Consensus        84 ~~~~~v~l~k----Plgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~  151 (334)
                      .+.|+|+|.|    ++|+.+..+.        +.++||..|.|||-|+  +.+++||.|+.+    ++.-+....+..+.
T Consensus         6 ~e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~I----Ng~~v~~~~~~ev~   79 (104)
T d2csja1           6 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV----NGTPMEDVLHSFAV   79 (104)
T ss_dssp             EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEE----SSCBCBTCCHHHHH
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEE----CCEECCCCCHHHHH
Confidence            4668888874    5888885443        2479999999999987  459999999998    33333333444566


Q ss_pred             HHHHHh
Q 019871          152 YTIRQR  157 (334)
Q Consensus       152 sai~~R  157 (334)
                      ..++.-
T Consensus        80 ~ll~~~   85 (104)
T d2csja1          80 QQLRKS   85 (104)
T ss_dssp             HHHHHS
T ss_pred             HHHHcC
Confidence            666543

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00013  Score=57.13  Aligned_cols=47  Identities=30%  Similarity=0.624  Sum_probs=38.2

Q ss_pred             EEEeec----CCcceeEeec-----------CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           87 YEVEIE----QPYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        87 ~~v~l~----kPlgl~~~~~-----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .+|+|.    .+||+.+.-+           .+.+|||..|.|+|.|+++|.+++||+|+.|
T Consensus        11 ~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~V   72 (111)
T d1ujua_          11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV   72 (111)
T ss_dssp             SCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBB
T ss_pred             EEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeee
Confidence            445555    4688988532           2357999999999999999999999999998

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00018  Score=52.92  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=33.7

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      .++|+.+.  .+.++||..|.+||.|+++| +++||.|+.+
T Consensus         8 ~g~Gf~l~--~~~~~~V~~V~~gspA~~aG-L~~GD~Il~V   45 (77)
T d2f5ya1           8 DGFGFTIC--CDSPVRVQAVDSGGPAERAG-LQQLDTVLQL   45 (77)
T ss_dssp             TBTSEEEE--CSSSCEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CcccEEEE--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence            46788884  46689999999999999999 9999999998

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00026  Score=54.81  Aligned_cols=77  Identities=25%  Similarity=0.389  Sum_probs=50.8

Q ss_pred             EEEeec--CCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHH
Q 019871           87 YEVEIE--QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL  162 (334)
Q Consensus        87 ~~v~l~--kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~  162 (334)
                      .+|++.  +|+|+.+.-+.|.  .+||..|.+++.|++.+ +++||+|+.+-   | .-..-.....+...|+.-...+.
T Consensus         7 ~~v~~~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~-L~~GD~Il~IN---g-~~v~~~t~~eav~li~~~~~~v~   81 (103)
T d1wf7a_           7 GSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSID---G-ISAQGMTHLEAQNKIKACTGSLN   81 (103)
T ss_dssp             EEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEET---T-EECSSCCHHHHHHHHHHCSSEEE
T ss_pred             eEEEEECCCCccEEEEcccCCCCCEEEEecCCCChHHHCC-CCCCCEEEEEC---C-EECCCCCHHHHHHHHHcCCCeEE
Confidence            445555  8999999776654  79999999999988765 99999999983   2 11122233456666654444444


Q ss_pred             HHhhcc
Q 019871          163 MKMQKR  168 (334)
Q Consensus       163 lkLek~  168 (334)
                      +...|.
T Consensus        82 L~v~R~   87 (103)
T d1wf7a_          82 MTLQRA   87 (103)
T ss_dssp             EEECCC
T ss_pred             EEEEEC
Confidence            444443

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.00016  Score=56.23  Aligned_cols=46  Identities=28%  Similarity=0.432  Sum_probs=38.3

Q ss_pred             EEEeecCCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeee
Q 019871           87 YEVEIEQPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        87 ~~v~l~kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +.+.=.+|+|+++.-+.|.  .+||..|.+++-|++++ +++||.|+.|
T Consensus         9 v~~~g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~-L~~GD~Il~V   56 (103)
T d1v5la_           9 VVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAI   56 (103)
T ss_dssp             CEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEE
T ss_pred             EEEECCCCCCEEEEeecCCCCCEEEEEccCCChHHhCC-CCCCCEEEEE
Confidence            3344459999999876554  69999999999999776 9999999998

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0072  Score=53.15  Aligned_cols=83  Identities=10%  Similarity=-0.091  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhccCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH-HCCChHHHHHHHHHH
Q 019871          202 MQNYMKKKEQKERREQ--DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS-KLNQVKAGLSALEDA  278 (334)
Q Consensus       202 ~~~y~~~iel~~~~~~--~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~-~lG~~eeAl~~lekA  278 (334)
                      ..-|.+.++..|.+..  ....+....+.|+++.|.+.|+++++..|..   ...|.+.|.... ..|+.+.|...|+++
T Consensus       119 ~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~---~~~~~~~a~~e~~~~~~~~~a~~i~e~~  195 (308)
T d2onda1         119 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---HHVYVTAALMEYYCSKDKSVAFKIFELG  195 (308)
T ss_dssp             HHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---THHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3445555555554322  2355555556666666666666666666655   345555554432 345566666666666


Q ss_pred             HHcCCCCHH
Q 019871          279 LLAGYEDFK  287 (334)
Q Consensus       279 Ielgp~~~~  287 (334)
                      ++..|.+..
T Consensus       196 l~~~p~~~~  204 (308)
T d2onda1         196 LKKYGDIPE  204 (308)
T ss_dssp             HHHHTTCHH
T ss_pred             HHhhhhhHH
Confidence            666665543

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0017  Score=47.64  Aligned_cols=53  Identities=19%  Similarity=0.399  Sum_probs=36.6

Q ss_pred             CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        94 Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      ++|+.+.   +|  +|..|.|||.|++++ +++||.|+.+-    ..-..-.++.++...+++
T Consensus        14 ~lGf~i~---~g--~V~~V~~gs~A~~~g-L~~GD~Il~IN----g~~v~~~~~~~~~~ll~~   66 (79)
T d1y7na1          14 QLGFSVQ---NG--IICSLMRGGIAERGG-VRVGHRIIEIN----GQSVVATPHEKIVHILSN   66 (79)
T ss_dssp             CCCEEEE---TT--EEEEECTTSHHHHHT-CCSSCEEEEET----TEECTTSCHHHHHHHHHH
T ss_pred             CcCEEEE---CC--EEEEEcCCCHHHHCC-CCCCCEEEEEC----CEEeCCCCHHHHHHHHHc
Confidence            4778773   22  799999999999977 99999999983    222222333456665554

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0014  Score=50.33  Aligned_cols=47  Identities=30%  Similarity=0.599  Sum_probs=38.3

Q ss_pred             eEEEeec-----CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeee
Q 019871           86 EYEVEIE-----QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus        86 ~~~v~l~-----kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      -..|+|.     +++|+.+..+.  +.++||..|.++|-|++++ +++||.|+.+
T Consensus         9 ~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~g-L~~GD~Il~I   62 (101)
T d1ueza_           9 VRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRV   62 (101)
T ss_dssp             CEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEE
T ss_pred             EEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcC-CCCCcEEEEE
Confidence            3556664     35999996543  3379999999999999999 9999999998

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0034  Score=46.35  Aligned_cols=44  Identities=18%  Similarity=0.389  Sum_probs=35.5

Q ss_pred             ceEEEeecC----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        85 ~~~~v~l~k----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +..+|+|.|    ++|+.+.   +|  +|..|.+||.|+++| +++||.|+.+-
T Consensus         4 ~pr~V~l~k~~~g~~Gf~i~---~g--~V~~v~~g~~A~~~G-l~~GD~Il~IN   51 (82)
T d1r6ja_           4 DPRTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEIN   51 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSEEEEEET
T ss_pred             CCEEEEEEeCCCCCcCEEEE---EE--EEEEECCCChHHhcC-cCCCCEEEEeC
Confidence            346788875    5777773   22  799999999999999 99999999983

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=96.14  E-value=0.0022  Score=48.21  Aligned_cols=39  Identities=28%  Similarity=0.500  Sum_probs=32.2

Q ss_pred             cceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871           95 YGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus        95 lgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      +||.+....  ..+++|..+.++|.|+++| |++||+|+.+-
T Consensus         7 iGi~i~~~~~~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~In   47 (92)
T d1fc6a3           7 VGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVD   47 (92)
T ss_dssp             CSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred             EEEEEEEcCCCCceEEEEEecCCCChhHHh-hHcCCcceecC
Confidence            466665443  3389999999999999999 99999999983

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.01  Score=47.44  Aligned_cols=53  Identities=13%  Similarity=0.175  Sum_probs=39.9

Q ss_pred             HHHHHhhccCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 019871          205 YMKKKEQKERR--EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC  260 (334)
Q Consensus       205 y~~~iel~~~~--~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~  260 (334)
                      ..+.....|.+  .-+|++|..++++|+|++|+.+++++|+++|++   ..+..-+-.
T Consensus        61 Le~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n---~qA~~L~~~  115 (124)
T d2pqrb1          61 LTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQVGALKSM  115 (124)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc---HHHHHHHHH
Confidence            33444445543  344799999999999999999999999999998   445544433

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.00025  Score=53.14  Aligned_cols=46  Identities=15%  Similarity=0.352  Sum_probs=36.0

Q ss_pred             CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871          103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR  155 (334)
Q Consensus       103 ~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~  155 (334)
                      .+.|++|..|.|++.|+++| +++||+|+.+-      ..++.++..+..++.
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~in------g~~v~~~~~~~~~l~   68 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGAN------QQAVKNIAELRKVLD   68 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEET------TEECSSHHHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEEC------CEEcCCHHHHHHHHH
Confidence            45589999999999999999 99999999983      445566655555443

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0017  Score=50.64  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=41.9

Q ss_pred             CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871           93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR  157 (334)
Q Consensus        93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R  157 (334)
                      .++|+++.  .+.++||..|.|++-|+++| +++||.|+.|-    .+-..-....++..+++.-
T Consensus        26 ~g~Gf~i~--g~~~v~V~~V~~~spA~~~G-L~~GD~Il~IN----g~~v~~~~~~ev~~llk~~   83 (111)
T d1vaea_          26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQ----GVDCKWLTVSEVMKLLKSF   83 (111)
T ss_dssp             SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEET----TEECSSCCHHHHHHHHHHT
T ss_pred             CccCEEEE--CCccEEEEEEcCCChHHhcc-cCcccEEEEEC----CEEcCCCCHHHHHHHHHcC
Confidence            56788873  34579999999999999999 99999999983    2211122334677767643

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.62  E-value=0.0074  Score=45.37  Aligned_cols=58  Identities=9%  Similarity=0.050  Sum_probs=43.6

Q ss_pred             cceeEeecCCCceEEEeeCCC--------CccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhh
Q 019871           95 YGLKFAKGRDGGTYIDAIAPG--------GSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG  159 (334)
Q Consensus        95 lgl~~~~~~~g~v~v~~~~~~--------~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G  159 (334)
                      +|+.|... ++++.|..|.+|        |-|+++|..++||.|+++      ..+++.+...+.+.++.+.|
T Consensus         3 lG~d~~~~-~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~I------dG~~v~~~~~~~~~l~g~~G   68 (91)
T d1k32a1           3 IACDFKLD-GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDI------DGETVGAGSNIYRVLSEKAG   68 (91)
T ss_dssp             CSEEEEEE-TTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEE------TTEECBTTBCHHHHHHTTTT
T ss_pred             ccEEEEEE-CCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEE------CCEeecCcceeEEEEecCCC
Confidence            68888664 677889999988        889999944899999998      34555555566666665555

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.012  Score=44.45  Aligned_cols=44  Identities=27%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHH
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI  154 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai  154 (334)
                      .-|++|..|.+++.|+++| +++||+|+.+-      ..++.++......+
T Consensus        25 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~in------g~~v~~~~~l~~~l   68 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAG-IQVNDLIISVD------NKPAISALETMDQV   68 (99)
T ss_dssp             --CEECCCCCSSSTTTSSS-CCTTCEECBSS------SSBCCCSHHHHHHH
T ss_pred             CCccEEEEecCCCCHHHcC-CCcceEEEEEC------CEecccHHHHHHHH
Confidence            3479999999999999999 99999999983      23445555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.39  E-value=0.074  Score=40.97  Aligned_cols=76  Identities=11%  Similarity=-0.043  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHH
Q 019871          201 QMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALE  276 (334)
Q Consensus       201 q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~le  276 (334)
                      ++.-|.++++... ....+++|.  ....++++|+..|+++.+.+  +   +.+++++|..|..    ..++++|+++|+
T Consensus        12 A~~~~~kaa~~g~-~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~---~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~   83 (133)
T d1klxa_          12 AIQYYVKACELNE-MFGCLSLVS--NSQINKQKLFQYLSKACELN--S---GNGCRFLGDFYENGKYVKKDLRKAAQYYS   83 (133)
T ss_dssp             HHHHHHHHHHTTC-TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-hhhhhhhcc--ccccCHHHHHHHHhhhhccc--c---hhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence            3344555554432 122345553  34578999999999999863  4   5799999999986    457899999999


Q ss_pred             HHHHcCCC
Q 019871          277 DALLAGYE  284 (334)
Q Consensus       277 kAIelgp~  284 (334)
                      +|.+.+..
T Consensus        84 ~aa~~g~~   91 (133)
T d1klxa_          84 KACGLNDQ   91 (133)
T ss_dssp             HHHHTTCH
T ss_pred             hhhccCcc
Confidence            99998764

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.012  Score=44.26  Aligned_cols=29  Identities=31%  Similarity=0.580  Sum_probs=27.4

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeee
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      +.|++|..|.|++.|+++| +++||+|+.+
T Consensus        30 ~~Gv~V~~V~~~spA~~aG-l~~GDiI~~i   58 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAG-LRPGDVILAI   58 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEE
T ss_pred             CCcEEEEEECCCchHhhcC-CCCCcEEEEE
Confidence            4589999999999999999 9999999998

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.01  Score=44.35  Aligned_cols=30  Identities=27%  Similarity=0.615  Sum_probs=27.4

Q ss_pred             CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871          104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATS  134 (334)
Q Consensus       104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s  134 (334)
                      ..||+|..|.|++.|+++| +++||+|+.+-
T Consensus        26 ~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~   55 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLN   55 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBSS
T ss_pred             CCCcEEEECCCChhHHHhC-CCcccEEEEEC
Confidence            3589999999999999999 99999999983

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.53  E-value=0.055  Score=41.00  Aligned_cols=54  Identities=22%  Similarity=0.402  Sum_probs=37.9

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh-hhh-HHHHhhc
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR-VGP-LLMKMQK  167 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R-~G~-V~lkLek  167 (334)
                      ||+|..|.+++.|++ + +++||+|+.+-   |   -++.++..+..+|... .|. +.+...|
T Consensus         4 Gv~V~~V~~~sPA~~-~-L~~GD~I~~in---g---~~v~~~~~l~~~i~~~~~G~~v~l~v~R   59 (103)
T d2hgaa1           4 GVQIDSVVPGSPASK-V-LTPGLVIESIN---G---MPTSNLTTYSAALKTISVGEVINITTDQ   59 (103)
T ss_dssp             CEEEEEECSSSGGGG-T-SCTTCEEEEET---T---EECSSHHHHHHHHTTCCTTCEEEEEETT
T ss_pred             cEEEEEECCCChHHh-c-CCCCCEEEEEC---C---EEcCCHHHHHHHHhhCCCCCEEEEEEEE
Confidence            699999999999986 5 99999999983   2   2345566666766653 343 3344444

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.23  Score=36.82  Aligned_cols=64  Identities=13%  Similarity=0.155  Sum_probs=40.2

Q ss_pred             ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871           85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ  156 (334)
Q Consensus        85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~  156 (334)
                      +.+.|+|.   ..+|+++..+.++..++..+.    ++..+.+++||.|++|=    .+-..-....++...++.
T Consensus        10 e~~~v~l~k~~~glGf~i~g~~~~~~~~~~~~----~~~~~~L~~GD~Il~VN----g~~v~~~t~~evv~~lk~   76 (96)
T d1ujva_          10 ELMTLTIVKGAQGFGFTIADSPTGQRVKQILD----IQGCPGLCEGDLIVEIN----QQNVQNLSHTEVVDILKD   76 (96)
T ss_dssp             CCEEEEEECCSSSSSEEEEEETTEEEEEEESC----GGGSTTCCSSCEEEEET----TEECSSCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCcccEEEEeeCCCceEeeccC----cccccCCCCCCEEEEEC----CEECCCCCHHHHHHHHHc
Confidence            55788887   358899976666655555543    34445699999999982    222222334456666654

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=85.82  E-value=0.25  Score=36.04  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=25.5

Q ss_pred             ceEEEeeCCCCccccccccccCcEeeee
Q 019871          106 GTYIDAIAPGGSADKTGMFQVGDKVLAT  133 (334)
Q Consensus       106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~  133 (334)
                      |.+|..+.+++-|+++| +++||+|+.+
T Consensus        20 G~~v~~v~~~s~~~~aG-l~~GDiI~~i   46 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIG-LQDGDMAVAL   46 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEE
T ss_pred             EEEEecCCCCCHHHHCC-CCCCCEEEEE
Confidence            88899999999999999 9999999998