Citrus Sinensis ID: 019874

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL
cccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEccccccHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEcccccccccccEEccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccc
cccHHHHHccccccccccccccccccccccHHHHcccccccccccccccHHHcccccccEEEEEEcccccccccHHHHHHHHHHccccccccHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccHHHHHHHHcccEEEEccccHcHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHcccccccEEccccccccHHHHHHHHccccHHHccc
MEDIEDLlagsggggappgfrlpinavgvnpkynknkprlhdnhlsktgslspkipgtetiymktfgcshnqsdseyMAGQLSAFGyaltdnseeaDIWLINtctvkspsqsaMDTLIAKCksakkplvvagcvpqgsrdlkelegvsivGVQQIDRVVEVVEETLKGHEVRllhrkklpaldlpkvrrnkfveilpinvgclgactycktkharghlgsyTVESLVGRVRTVIADGVKEvwlssedtgaygrdigVNLPILLNAIVaelppdgstmlrigmtnppFILEHLKEIAEVlrhpcvysflhvpvqsgsdaVLSVSqkivptksvsl
MEDIEDLlagsggggappgfRLPINAVGVNPKYNknkprlhdnhlsktgslspkipGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVpqgsrdlkelegvsivgvqqiDRVVEVVEETLkghevrllhrkklpaldlpkvrrNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDavlsvsqkivptksvsl
MEDIEDLLagsggggappgFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL
***********************I**********************************ETIYMKTFGCSHN****EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP***AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL**************
*EDIEDLLAG**************************************************IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVP***VSL
MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL
*EDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK*********LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVP******
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MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q6P4Y0 553 Threonylcarbamoyladenosin yes no 0.925 0.558 0.541 2e-95
Q6NS26 556 Threonylcarbamoyladenosin N/A no 0.925 0.555 0.541 4e-95
Q5VV42 579 Threonylcarbamoyladenosin yes no 0.940 0.542 0.522 9e-95
Q91WE6 578 Threonylcarbamoyladenosin yes no 0.937 0.541 0.522 1e-93
Q6PG34 547 Threonylcarbamoyladenosin yes no 0.844 0.515 0.553 2e-92
Q291H5 553 Threonylcarbamoyladenosin yes no 0.787 0.475 0.608 6e-92
Q7K4W1 552 Threonylcarbamoyladenosin yes no 0.787 0.476 0.605 2e-90
Q8MXQ7 425 Threonylcarbamoyladenosin yes no 0.568 0.447 0.608 2e-59
O59545 425 Probable threonylcarbamoy yes no 0.769 0.604 0.391 1e-52
Q9UXX9 425 Probable threonylcarbamoy yes no 0.769 0.604 0.395 2e-52
>sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis GN=cdkal1 PE=2 SV=1 Back     alignment and function desciption
 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 178/329 (54%), Positives = 234/329 (71%), Gaps = 20/329 (6%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
           ++DIED+++ +      P  R     N V    K NKNK +  +     T      IPGT
Sbjct: 9   LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59

Query: 59  ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
           + I+++T+GCSHN SD EYMAGQL+A+GY++T+  E+AD+WL+N+CTVKSP++      I
Sbjct: 60  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119

Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
            K + A K +V++GCVPQ     + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179

Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
                     LDLPK+R+N  +EI+ IN GCL ACTYCKTKHARG L SY VE LV R  
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239

Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
               +GV E+WL+SEDTGAYGRDIG +LP LL  +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297

Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
           L+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVL 326
Catalyzes the methylthiolation of N6-threonylcarbamoyladenosine (t(6)A), leading to the formation of 2-methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis GN=cdkal1 PE=2 SV=1 Back     alignment and function description
>sp|Q5VV42|CDKAL_HUMAN Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo sapiens GN=CDKAL1 PE=1 SV=1 Back     alignment and function description
>sp|Q91WE6|CDKAL_MOUSE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus musculus GN=Cdkal1 PE=2 SV=1 Back     alignment and function description
>sp|Q6PG34|CDKAL_DANRE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Danio rerio GN=cdkal1 PE=2 SV=1 Back     alignment and function description
>sp|Q291H5|CDKAL_DROPS Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila pseudoobscura pseudoobscura GN=GA19679 PE=3 SV=1 Back     alignment and function description
>sp|Q7K4W1|CDKAL_DROME Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila melanogaster GN=CG6550 PE=2 SV=1 Back     alignment and function description
>sp|Q8MXQ7|CDKAL_CAEEL Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Caenorhabditis elegans GN=Y92H12BL.1 PE=3 SV=2 Back     alignment and function description
>sp|O59545|AMTAB_PYRHO Probable threonylcarbamoyladenosine tRNA methylthiotransferase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1875 PE=3 SV=2 Back     alignment and function description
>sp|Q9UXX9|AMTAB_PYRAB Probable threonylcarbamoyladenosine tRNA methylthiotransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB17290 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
359493166 622 PREDICTED: CDK5 regulatory subunit-assoc 0.961 0.516 0.849 1e-159
255561612 630 radical sam protein, putative [Ricinus c 0.973 0.515 0.841 1e-150
18409989 601 Methylthiotransferase [Arabidopsis thali 0.967 0.537 0.813 1e-149
297839059 602 radical SAM domain-containing protein [A 0.967 0.536 0.807 1e-149
449447617 635 PREDICTED: threonylcarbamoyladenosine tR 0.970 0.510 0.821 1e-148
449506818 635 PREDICTED: threonylcarbamoyladenosine tR 0.970 0.510 0.812 1e-147
356542899 609 PREDICTED: CDKAL1-like protein-like [Gly 0.940 0.515 0.797 1e-147
224135639 612 predicted protein [Populus trichocarpa] 0.928 0.506 0.830 1e-147
357111240 624 PREDICTED: CDK5 regulatory subunit-assoc 0.940 0.503 0.776 1e-145
242075846 623 hypothetical protein SORBIDRAFT_06g01704 0.943 0.505 0.761 1e-144
>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/325 (84%), Positives = 295/325 (90%), Gaps = 4/325 (1%)

Query: 1   MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
           MEDIEDLL G+G GGAPPGFRLP+ +VG  PK NKNKP L      K+      IPGT+T
Sbjct: 1   MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLE----KKSHIQDYIIPGTQT 56

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           IYMKTFGCSHNQSDSEYMAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K
Sbjct: 57  IYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITK 116

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
            +S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 117 GRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 176

Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
           ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE
Sbjct: 177 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKE 236

Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
           +WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLR
Sbjct: 237 IWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLR 296

Query: 301 HPCVYSFLHVPVQSGSDAVLSVSQK 325
           HPCVYSFLHVPVQSGSDA+LS   +
Sbjct: 297 HPCVYSFLHVPVQSGSDAILSAMNR 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis] gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana] gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana] gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana] gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana] gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa] gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor] gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2030342 601 AT1G72090 [Arabidopsis thalian 0.967 0.537 0.795 4.1e-136
UNIPROTKB|E1BRH0 568 CDKAL1 "Uncharacterized protei 0.790 0.464 0.611 3.7e-87
UNIPROTKB|Q5VV42 579 CDKAL1 "Threonylcarbamoyladeno 0.940 0.542 0.522 7.7e-87
UNIPROTKB|E2RAI1 578 CDKAL1 "CDK5 regulatory subuni 0.865 0.5 0.561 9.9e-87
MGI|MGI:1921765 578 Cdkal1 "CDK5 regulatory subuni 0.937 0.541 0.525 3.3e-86
UNIPROTKB|F1RUG0 578 CDKAL1 "Uncharacterized protei 0.931 0.538 0.525 4.3e-86
UNIPROTKB|F1MAW5 578 CDKAL1 "Uncharacterized protei 0.937 0.541 0.525 8.9e-86
UNIPROTKB|Q291H5 553 GA19679 "Threonylcarbamoyladen 0.787 0.475 0.608 6.2e-85
ZFIN|ZDB-GENE-040426-1443 547 cdkal1 "CDK5 regulatory subuni 0.838 0.511 0.563 1e-84
FB|FBgn0034214 552 CG6550 [Drosophila melanogaste 0.787 0.476 0.605 1.9e-83
TAIR|locus:2030342 AT1G72090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 264/332 (79%), Positives = 287/332 (86%)

Query:     1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
             MEDIEDLL           FRLP+NAVG+NPK NK+K R+         S   SL+P   
Sbjct:     1 MEDIEDLLAGGVGGAPPG-FRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58

Query:    54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
             KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+  EEAD+WLINTCTVKSPSQSA
Sbjct:    59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118

Query:   114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
             M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct:   119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178

Query:   174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
             L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct:   179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238

Query:   234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
             I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct:   239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298

Query:   294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
             EIA VLRHPCVY+FLHVPVQSGSD+VL+   +
Sbjct:   299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNR 330
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009451 "RNA modification" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
GO:0043412 "macromolecule modification" evidence=IEA
GO:0051536 "iron-sulfur cluster binding" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0016020 "membrane" evidence=IDA
UNIPROTKB|E1BRH0 CDKAL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VV42 CDKAL1 "Threonylcarbamoyladenosine tRNA methylthiotransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAI1 CDKAL1 "CDK5 regulatory subunit-associated protein 1-like 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1921765 Cdkal1 "CDK5 regulatory subunit associated protein 1-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUG0 CDKAL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAW5 CDKAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q291H5 GA19679 "Threonylcarbamoyladenosine tRNA methylthiotransferase" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1443 cdkal1 "CDK5 regulatory subunit associated protein 1-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0034214 CG6550 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
TIGR01578 420 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying e 5e-97
COG0621 437 COG0621, MiaB, 2-methylthioadenine synthetase [Tra 7e-66
TIGR00089 429 TIGR00089, TIGR00089, radical SAM methylthiotransf 7e-66
PRK14330 434 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA 4e-36
PRK14331 437 PRK14331, PRK14331, (dimethylallyl)adenosine tRNA 6e-36
TIGR01579 414 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying e 4e-34
TIGR01574 438 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl 4e-32
TIGR01125 430 TIGR01125, TIGR01125, ribosomal protein S12 methyl 4e-29
PRK14328 439 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA 6e-29
PRK14327 509 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA 2e-28
PRK14340 445 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA 9e-28
pfam0091998 pfam00919, UPF0004, Uncharacterized protein family 1e-27
PRK14325 444 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA 7e-26
PRK14333 448 PRK14333, PRK14333, (dimethylallyl)adenosine tRNA 1e-25
PRK14338 459 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA 2e-25
PRK14329 467 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA 8e-25
PRK14337 446 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA 4e-23
PRK14339 420 PRK14339, PRK14339, (dimethylallyl)adenosine tRNA 2e-21
PRK14335 455 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA 2e-21
PRK14326 502 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA 1e-19
PRK14334 440 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA 6e-19
PRK14336 418 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA 1e-15
PRK14332 449 PRK14332, PRK14332, (dimethylallyl)adenosine tRNA 2e-15
PRK14862 440 PRK14862, rimO, ribosomal protein S12 methylthiotr 1e-11
smart00729216 smart00729, Elp3, Elongator protein 3, MiaB family 3e-10
COG1032 490 COG1032, COG1032, Fe-S oxidoreductase [Energy prod 1e-05
pfam04055165 pfam04055, Radical_SAM, Radical SAM superfamily 1e-05
>gnl|CDD|233479 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information 
 Score =  293 bits (751), Expect = 5e-97
 Identities = 132/264 (50%), Positives = 178/264 (67%), Gaps = 7/264 (2%)

Query: 61  IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
           +Y++T+GC+ N  DSE M   L+A+G+ L +N+EEAD+ ++NTCTVK+ ++  M   I  
Sbjct: 2   VYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIES 61

Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
                K +VVAGC+PQ  ++     G   S++GVQ IDR+VEVVEETLK        R+ 
Sbjct: 62  LMRNGKHVVVAGCMPQAQKESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG--RREA 119

Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
              L LPK R+N  +EI+PIN GCLG C+YC TKHARG L SY  E +V + R ++A+G 
Sbjct: 120 GTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGC 179

Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
           KE+W++S+DTGAYGRDIG  LP LL  ++ E+P  G   LR+GM NP  +LE L E+A V
Sbjct: 180 KEIWITSQDTGAYGRDIGSRLPELLR-LITEIP--GEFRLRVGMMNPKNVLEILDELANV 236

Query: 299 LRHPCVYSFLHVPVQSGSDAVLSV 322
            +H  VY FLH+PVQSGSD+VL  
Sbjct: 237 YQHEKVYKFLHLPVQSGSDSVLKE 260

This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by This model as well as ones falling within the scope of the MiaB equivalog model [Protein synthesis, tRNA and rRNA base modification]. Length = 420
>gnl|CDD|223694 COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232820 TIGR00089, TIGR00089, radical SAM methylthiotransferase, MiaB/RimO family Back     alignment and domain information
>gnl|CDD|184627 PRK14330, PRK14330, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184628 PRK14331, PRK14331, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|233480 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme Back     alignment and domain information
>gnl|CDD|233476 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>gnl|CDD|233279 TIGR01125, TIGR01125, ribosomal protein S12 methylthiotransferase RimO Back     alignment and domain information
>gnl|CDD|237675 PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184624 PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237679 PRK14340, PRK14340, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|216191 pfam00919, UPF0004, Uncharacterized protein family UPF0004 Back     alignment and domain information
>gnl|CDD|237673 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237677 PRK14333, PRK14333, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184633 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237676 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|172813 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184634 PRK14339, PRK14339, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237678 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237674 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184630 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|172808 PRK14332, PRK14332, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237838 PRK14862, rimO, ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>gnl|CDD|223963 COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
KOG4355 547 consensus Predicted Fe-S oxidoreductase [General f 100.0
COG0621 437 MiaB 2-methylthioadenine synthetase [Translation, 100.0
PRK14340 445 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14327 509 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14326 502 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14332 449 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14330 434 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14329 467 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14335 455 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14337 446 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14333 448 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
TIGR01578 420 MiaB-like-B MiaB-like tRNA modifying enzyme, archa 100.0
TIGR00089 429 RNA modification enzyme, MiaB family. This subfami 100.0
PRK14331 437 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14336 418 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14328 439 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
TIGR01574 438 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 100.0
TIGR01125 430 MiaB-like tRNA modifying enzyme YliG, TIGR01125. T 100.0
PRK14325 444 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14338 459 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
TIGR01579 414 MiaB-like-C MiaB-like tRNA modifying enzyme. This 100.0
PRK14862 440 rimO ribosomal protein S12 methylthiotransferase; 100.0
PRK14334 440 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
PRK14339 420 (dimethylallyl)adenosine tRNA methylthiotransferas 100.0
KOG2492 552 consensus CDK5 activator-binding protein [Signal t 100.0
PF0091998 UPF0004: Uncharacterized protein family UPF0004; I 99.96
TIGR02026 497 BchE magnesium-protoporphyrin IX monomethyl ester 99.95
TIGR03471 472 HpnJ hopanoid biosynthesis associated radical SAM 99.94
PRK00955 620 hypothetical protein; Provisional 99.93
PRK01254 707 hypothetical protein; Provisional 99.9
COG1032 490 Fe-S oxidoreductase [Energy production and convers 99.81
PRK05481 289 lipoyl synthase; Provisional 99.75
PRK12928290 lipoyl synthase; Provisional 99.59
TIGR00510 302 lipA lipoate synthase. The family shows strong seq 99.56
PRK07094 323 biotin synthase; Provisional 99.53
TIGR01210 313 conserved hypothetical protein TIGR01210. This fam 99.52
PRK08599 377 coproporphyrinogen III oxidase; Provisional 99.5
PF04055166 Radical_SAM: Radical SAM superfamily; InterPro: IP 99.4
PRK09058 449 coproporphyrinogen III oxidase; Provisional 99.38
PRK06245 336 cofG FO synthase subunit 1; Reviewed 99.37
PRK05799 374 coproporphyrinogen III oxidase; Provisional 99.37
COG1031 560 Uncharacterized Fe-S oxidoreductase [Energy produc 99.36
PRK05628 375 coproporphyrinogen III oxidase; Validated 99.36
PLN02428 349 lipoic acid synthase 99.36
PRK05904 353 coproporphyrinogen III oxidase; Provisional 99.36
PRK08446 350 coproporphyrinogen III oxidase; Provisional 99.34
TIGR00538 455 hemN oxygen-independent coproporphyrinogen III oxi 99.31
smart00729216 Elp3 Elongator protein 3, MiaB family, Radical SAM 99.29
PRK09057 380 coproporphyrinogen III oxidase; Provisional 99.29
PRK06256 336 biotin synthase; Validated 99.29
PRK07379 400 coproporphyrinogen III oxidase; Provisional 99.28
PRK08207 488 coproporphyrinogen III oxidase; Provisional 99.28
PRK08208 430 coproporphyrinogen III oxidase; Validated 99.28
PRK13347 453 coproporphyrinogen III oxidase; Provisional 99.27
PRK08629 433 coproporphyrinogen III oxidase; Provisional 99.27
PRK09249 453 coproporphyrinogen III oxidase; Provisional 99.25
PRK08898 394 coproporphyrinogen III oxidase; Provisional 99.24
TIGR01212 302 radical SAM protein, TIGR01212 family. This unchar 99.24
TIGR00423 309 radical SAM domain protein, CofH subfamily. This p 99.23
TIGR00433 296 bioB biotin synthetase. Catalyzes the last step of 99.23
TIGR00539 360 hemN_rel putative oxygen-independent coproporphyri 99.19
PRK08445 348 hypothetical protein; Provisional 99.19
PRK05660 378 HemN family oxidoreductase; Provisional 99.17
PRK06582 390 coproporphyrinogen III oxidase; Provisional 99.17
cd01335204 Radical_SAM Radical SAM superfamily. Enzymes of th 99.15
PRK06294 370 coproporphyrinogen III oxidase; Provisional 99.12
TIGR03551 343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.1
TIGR03550 322 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.06
TIGR03700 351 mena_SCO4494 putative menaquinone biosynthesis pro 99.01
TIGR01211 522 ELP3 histone acetyltransferase, ELP3 family. The S 99.01
PRK00164 331 moaA molybdenum cofactor biosynthesis protein A; R 98.96
TIGR03699 340 mena_SCO4550 menaquinone biosynthesis protein, SCO 98.96
COG1243 515 ELP3 Histone acetyltransferase [Transcription / Ch 98.93
PRK13361 329 molybdenum cofactor biosynthesis protein A; Provis 98.92
PRK09240 371 thiH thiamine biosynthesis protein ThiH; Reviewed 98.9
TIGR03822321 AblA_like_2 lysine-2,3-aminomutase-related protein 98.83
TIGR00238331 KamA family protein. Note that the E. coli homolog 98.82
TIGR02351 366 thiH thiazole biosynthesis protein ThiH. Members t 98.82
TIGR02666 334 moaA molybdenum cofactor biosynthesis protein A, b 98.81
PRK08508 279 biotin synthase; Provisional 98.81
TIGR02668 302 moaA_archaeal probable molybdenum cofactor biosynt 98.78
COG0635 416 HemN Coproporphyrinogen III oxidase and related Fe 98.67
PLN02951 373 Molybderin biosynthesis protein CNX2 98.62
PRK06267 350 hypothetical protein; Provisional 98.61
TIGR02495191 NrdG2 anaerobic ribonucleoside-triphosphate reduct 98.51
PRK14463 349 ribosomal RNA large subunit methyltransferase N; P 98.47
TIGR02109 358 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. 98.45
PRK05301 378 pyrroloquinoline quinone biosynthesis protein PqqE 98.44
COG2896 322 MoaA Molybdenum cofactor biosynthesis enzyme [Coen 98.42
PRK09613 469 thiH thiamine biosynthesis protein ThiH; Reviewed 98.38
TIGR03820 417 lys_2_3_AblA lysine-2,3-aminomutase. This model de 98.35
COG1242 312 Predicted Fe-S oxidoreductase [General function pr 98.31
PRK14456 368 ribosomal RNA large subunit methyltransferase N; P 98.31
PLN02389 379 biotin synthase 98.3
PRK14455 356 ribosomal RNA large subunit methyltransferase N; P 98.25
TIGR03821321 AblA_like_1 lysine-2,3-aminomutase-related protein 98.22
TIGR02493235 PFLA pyruvate formate-lyase 1-activating enzyme. A 98.22
PRK05926 370 hypothetical protein; Provisional 98.21
PRK14470 336 ribosomal RNA large subunit methyltransferase N; P 98.08
PRK15108 345 biotin synthase; Provisional 98.05
COG2100 414 Predicted Fe-S oxidoreductase [General function pr 98.01
PRK07360 371 FO synthase subunit 2; Reviewed 98.0
PRK14469 343 ribosomal RNA large subunit methyltransferase N; P 97.98
PRK14466 345 ribosomal RNA large subunit methyltransferase N; P 97.93
PRK14468 343 ribosomal RNA large subunit methyltransferase N; P 97.87
PRK08444 353 hypothetical protein; Provisional 97.86
PRK14460 354 ribosomal RNA large subunit methyltransferase N; P 97.86
cd02068127 radical_SAM_B12_BD B12 binding domain_like associa 97.85
PRK14457 345 ribosomal RNA large subunit methyltransferase N; P 97.81
PRK11145246 pflA pyruvate formate lyase-activating enzyme 1; P 97.81
PRK14459 373 ribosomal RNA large subunit methyltransferase N; P 97.81
TIGR00048 355 radical SAM enzyme, Cfr family. A Staphylococcus s 97.76
PRK09234 843 fbiC FO synthase; Reviewed 97.72
TIGR03365238 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn 97.69
PF02310121 B12-binding: B12 binding domain; InterPro: IPR0061 97.69
COG1509 369 KamA Lysine 2,3-aminomutase [Amino acid transport 97.67
PRK05927 350 hypothetical protein; Provisional 97.66
PRK14453 347 chloramphenicol/florfenicol resistance protein; Pr 97.65
TIGR01290 442 nifB nitrogenase cofactor biosynthesis protein Nif 97.64
PTZ00413 398 lipoate synthase; Provisional 97.62
PRK14467 348 ribosomal RNA large subunit methyltransferase N; P 97.53
PRK14465342 ribosomal RNA large subunit methyltransferase N; P 97.53
COG0820 349 Predicted Fe-S-cluster redox enzyme [General funct 97.45
TIGR03470 318 HpnH hopanoid biosynthesis associated radical SAM 97.45
COG0602212 NrdG Organic radical activating enzymes [Posttrans 97.37
PRK14461 371 ribosomal RNA large subunit methyltransferase N; P 97.37
COG1060 370 ThiH Thiamine biosynthesis enzyme ThiH and related 97.34
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 97.28
PRK14464 344 ribosomal RNA large subunit methyltransferase N; P 97.27
TIGR02826147 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph 97.24
COG1244 358 Predicted Fe-S oxidoreductase [General function pr 97.21
PRK11194 372 ribosomal RNA large subunit methyltransferase N; P 97.16
PRK14454 342 ribosomal RNA large subunit methyltransferase N; P 97.15
PRK13762 322 tRNA-modifying enzyme; Provisional 97.09
PRK14462 356 ribosomal RNA large subunit methyltransferase N; P 97.07
PRK09234 843 fbiC FO synthase; Reviewed 97.04
cd02065125 B12-binding_like B12 binding domain (B12-BD). Most 96.97
COG0731 296 Fe-S oxidoreductases [Energy production and conver 96.95
PF13353139 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 96.93
COG0502 335 BioB Biotin synthase and related enzymes [Coenzyme 96.89
PF13394119 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 96.74
COG0535 347 Predicted Fe-S oxidoreductases [General function p 96.63
TIGR03278 404 methan_mark_10 putative methanogenesis marker prot 96.48
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 96.42
cd02067119 B12-binding B12 binding domain (B12-BD). This doma 96.41
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 96.35
PRK02261137 methylaspartate mutase subunit S; Provisional 96.32
TIGR02491154 NrdG anaerobic ribonucleoside-triphosphate reducta 95.91
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 95.91
PRK13758 370 anaerobic sulfatase-maturase; Provisional 95.9
COG1533 297 SplB DNA repair photolyase [DNA replication, recom 95.81
COG1313335 PflX Uncharacterized Fe-S protein PflX, homolog of 95.45
PRK13745 412 anaerobic sulfatase-maturase; Provisional 95.34
KOG2492552 consensus CDK5 activator-binding protein [Signal t 95.15
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 94.79
COG0320306 LipA Lipoate synthase [Coenzyme metabolism] 94.63
PRK09426714 methylmalonyl-CoA mutase; Reviewed 94.28
PRK11121154 nrdG anaerobic ribonucleotide reductase-activating 94.28
KOG2672 360 consensus Lipoate synthase [Coenzyme transport and 93.56
cd02070201 corrinoid_protein_B12-BD B12 binding domain of cor 93.21
COG0641 378 AslB Arylsulfatase regulator (Fe-S oxidoreductase) 92.71
PRK14818173 NADH dehydrogenase subunit B; Provisional 92.7
COG1625 414 Fe-S oxidoreductase, related to NifB/MoaA family [ 92.32
COG5014228 Predicted Fe-S oxidoreductase [General function pr 91.93
COG2108 353 Uncharacterized conserved protein related to pyruv 91.9
PRK14816182 NADH dehydrogenase subunit B; Provisional 91.55
TIGR01957145 nuoB_fam NADH-quinone oxidoreductase, B subunit. T 91.43
COG1180260 PflA Pyruvate-formate lyase-activating enzyme [Pos 90.68
KOG2535 554 consensus RNA polymerase II elongator complex, sub 90.56
TIGR02370197 pyl_corrinoid methyltransferase cognate corrinoid 89.7
PRK06411183 NADH dehydrogenase subunit B; Validated 88.64
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 88.49
KOG2876 323 consensus Molybdenum cofactor biosynthesis pathway 88.47
PRK14813189 NADH dehydrogenase subunit B; Provisional 87.75
PF04016147 DUF364: Domain of unknown function (DUF364); Inter 87.68
COG1856 275 Uncharacterized homolog of biotin synthetase [Func 87.54
PRK14819264 NADH dehydrogenase subunit B; Provisional 87.54
cd02069213 methionine_synthase_B12_BD B12 binding domain of m 87.19
KOG2900 380 consensus Biotin synthase [Coenzyme transport and 86.89
CHL00023225 ndhK NADH dehydrogenase subunit K 86.34
PF08821107 CGGC: CGGC domain; InterPro: IPR014925 Proteins in 85.03
PRK14815183 NADH dehydrogenase subunit B; Provisional 84.8
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-71  Score=519.69  Aligned_cols=325  Identities=66%  Similarity=1.061  Sum_probs=300.8

Q ss_pred             CCchhHHhhcCCCCCCCCCCCCCCCccccccccCCCCCccccCccccCCCCCCCCCCCceEEEEeeCCCCChhHHHHHHH
Q 019874            1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAG   80 (334)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~GC~~N~~Dse~m~~   80 (334)
                      |||||||+++   +|++|++|++.++ .|+||.||+...+...+.+...+.++.|||++||||+||||++|++|||+|+|
T Consensus         1 ~ddiedl~s~---~d~kp~~r~~~~k-~v~pk~~kr~~~k~~q~ee~~~ps~s~ipgtqki~iktwgcshnnsdseymag   76 (547)
T KOG4355|consen    1 MDDIEDLLSG---GDAKPGFRLPLNK-VVNPKTNKRISSKPDQIEESNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMAG   76 (547)
T ss_pred             CccHHHHhhC---CCCCCcccccccc-ccccccccccccCchhhhhcCCCccccCCCccEEEEEeecccCCCchhHHHhh
Confidence            7999999976   7999999998554 59999988754332223333345689999999999999999999999999999


Q ss_pred             HHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhhhccCccEEEcCCChHHHHH
Q 019874           81 QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVE  160 (334)
Q Consensus        81 ~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~~~~~~d~vvG~~e~~~i~e  160 (334)
                      +|+++||.+++ +++||+|++|||||+++++..+++.|.+.++.++++|++||.+|..|+...+.+.+|+|.++++++.|
T Consensus        77 qlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvve  155 (547)
T KOG4355|consen   77 QLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVVE  155 (547)
T ss_pred             hHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHHH
Confidence            99999999998 89999999999999999999999999999998999999999999999988888889999999999999


Q ss_pred             HHHHHhcCCceeecccccCCCCCCccccccceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcE
Q 019874          161 VVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE  240 (334)
Q Consensus       161 ~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~ke  240 (334)
                      ++++.++|+.++++.+...+++++|+.|++++..+|.|+.||.+.|+||.+.++||.+-|+|++++++.++...+.|+.|
T Consensus       156 vveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~e  235 (547)
T KOG4355|consen  156 VVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCE  235 (547)
T ss_pred             HHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEE
Confidence            99999999999988777778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHH
Q 019874          241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL  320 (334)
Q Consensus       241 i~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vL  320 (334)
                      ||+++.|+++||+|++.++..||+++.+.+|  ...++|++++||.+|.+++++++...++|+++.+||+|+|||||.||
T Consensus       236 IwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl  313 (547)
T KOG4355|consen  236 IWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVL  313 (547)
T ss_pred             EEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHH
Confidence            9999999999999999999999999999998  67899999999999999999999888999999999999999999999


Q ss_pred             HHhCCCCCcCcc
Q 019874          321 SVSQKIVPTKSV  332 (334)
Q Consensus       321 k~M~R~~t~e~v  332 (334)
                      ..|+|.|+..++
T Consensus       314 ~emkreyc~~df  325 (547)
T KOG4355|consen  314 TEMKREYCNFDF  325 (547)
T ss_pred             HHHHHHHhhhhH
Confidence            999999987664

>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information
>TIGR00089 RNA modification enzyme, MiaB family Back     alignment and domain information
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 Back     alignment and domain information
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme Back     alignment and domain information
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA Back     alignment and domain information
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase Back     alignment and domain information
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ Back     alignment and domain information
>PRK00955 hypothetical protein; Provisional Back     alignment and domain information
>PRK01254 hypothetical protein; Provisional Back     alignment and domain information
>COG1032 Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK05481 lipoyl synthase; Provisional Back     alignment and domain information
>PRK12928 lipoyl synthase; Provisional Back     alignment and domain information
>TIGR00510 lipA lipoate synthase Back     alignment and domain information
>PRK07094 biotin synthase; Provisional Back     alignment and domain information
>TIGR01210 conserved hypothetical protein TIGR01210 Back     alignment and domain information
>PRK08599 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation Back     alignment and domain information
>PRK09058 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK06245 cofG FO synthase subunit 1; Reviewed Back     alignment and domain information
>PRK05799 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK05628 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PLN02428 lipoic acid synthase Back     alignment and domain information
>PRK05904 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08446 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>PRK09057 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK06256 biotin synthase; Validated Back     alignment and domain information
>PRK07379 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08207 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08208 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PRK13347 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08629 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK09249 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08898 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR01212 radical SAM protein, TIGR01212 family Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>TIGR00433 bioB biotin synthetase Back     alignment and domain information
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>PRK05660 HemN family oxidoreductase; Provisional Back     alignment and domain information
>PRK06582 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>cd01335 Radical_SAM Radical SAM superfamily Back     alignment and domain information
>PRK06294 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family Back     alignment and domain information
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed Back     alignment and domain information
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family Back     alignment and domain information
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional Back     alignment and domain information
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>TIGR00238 KamA family protein Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal Back     alignment and domain information
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] Back     alignment and domain information
>PLN02951 Molybderin biosynthesis protein CNX2 Back     alignment and domain information
>PRK06267 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E Back     alignment and domain information
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional Back     alignment and domain information
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase Back     alignment and domain information
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PLN02389 biotin synthase Back     alignment and domain information
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme Back     alignment and domain information
>PRK05926 hypothetical protein; Provisional Back     alignment and domain information
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK15108 biotin synthase; Provisional Back     alignment and domain information
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain Back     alignment and domain information
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional Back     alignment and domain information
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00048 radical SAM enzyme, Cfr family Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Back     alignment and domain information
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) Back     alignment and domain information
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB Back     alignment and domain information
>PTZ00413 lipoate synthase; Provisional Back     alignment and domain information
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH Back     alignment and domain information
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK13762 tRNA-modifying enzyme; Provisional Back     alignment and domain information
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>cd02065 B12-binding_like B12 binding domain (B12-BD) Back     alignment and domain information
>COG0731 Fe-S oxidoreductases [Energy production and conversion] Back     alignment and domain information
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A Back     alignment and domain information
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] Back     alignment and domain information
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A Back     alignment and domain information
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>cd02067 B12-binding B12 binding domain (B12-BD) Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>PRK13758 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] Back     alignment and domain information
>PRK13745 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>COG0320 LipA Lipoate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK09426 methylmalonyl-CoA mutase; Reviewed Back     alignment and domain information
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional Back     alignment and domain information
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins Back     alignment and domain information
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] Back     alignment and domain information
>PRK14818 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] Back     alignment and domain information
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] Back     alignment and domain information
>PRK14816 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit Back     alignment and domain information
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family Back     alignment and domain information
>PRK06411 NADH dehydrogenase subunit B; Validated Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK14813 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function Back     alignment and domain information
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] Back     alignment and domain information
>PRK14819 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase Back     alignment and domain information
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>CHL00023 ndhK NADH dehydrogenase subunit K Back     alignment and domain information
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region Back     alignment and domain information
>PRK14815 NADH dehydrogenase subunit B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
2qgq_A 304 Crystal Structure Of Tm_1862 From Thermotoga Mariti 2e-10
>pdb|2QGQ|A Chain A, Crystal Structure Of Tm_1862 From Thermotoga Maritima. Northeast Structural Genomics Consortium Target Vr77 Length = 304 Back     alignment and structure 
Iteration: 1

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
           + I+ GC   CT+C     +G L S ++E +   V  ++ +G KE+ L ++DT +YG D+
Sbjct: 8   VKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDL 67
Query: 256 GVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
                LP LL  + +    +G   +R+   +P  + E +  I+  L    V  +  VPVQ
Sbjct: 68  YRKQALPDLLRRLNS---LNGEFWIRVXYLHPDHLTEEI--ISAXLELDKVVKYFDVPVQ 122
Query: 314 SGSDAVLSV 322
            GSD +L +
Sbjct: 123 HGSDKILKL 131

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
2qgq_A 304 Protein TM_1862; alpha-beta protein, structural ge 1e-14
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Length = 304 Back     alignment and structure
 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VN 258
           GC   CT+C     +G L S ++E +   V  ++ +G KE+ L ++DT +YG D+     
Sbjct: 13  GCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQA 72

Query: 259 LPILLNAIVAELPPDGSTMLRIGMTNP-PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
           LP LL  + +    +G   +R+   +P     E +  + E      V  +  VPVQ GSD
Sbjct: 73  LPDLLRRLNSL---NGEFWIRVMYLHPDHLTEEIISAMLE---LDKVVKYFDVPVQHGSD 126

Query: 318 AVL 320
            +L
Sbjct: 127 KIL 129

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
2qgq_A 304 Protein TM_1862; alpha-beta protein, structural ge 99.94
1olt_A 457 Oxygen-independent coproporphyrinogen III oxidase; 99.48
3t7v_A 350 Methylornithine synthase PYLB; TIM-barrel fold, mu 99.34
3iix_A 348 Biotin synthetase, putative; adoMet radical, SAM r 99.26
1r30_A 369 Biotin synthase; SAM radical protein, TIM barrel, 99.19
1tv8_A 340 MOAA, molybdenum cofactor biosynthesis protein A; 99.12
3c8f_A245 Pyruvate formate-lyase 1-activating enzyme; adoMet 98.85
2yx0_A 342 Radical SAM enzyme; predicted tRNA modification en 98.73
2a5h_A 416 L-lysine 2,3-aminomutase; radical SAM, four-iron-f 98.58
2z2u_A 311 UPF0026 protein MJ0257; metal binding protein; 2.4 98.36
3rfa_A 404 Ribosomal RNA large subunit methyltransferase N; r 97.92
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 97.06
1ccw_A137 Protein (glutamate mutase); coenzyme B12, radical 95.35
1req_A727 Methylmalonyl-COA mutase; isomerase, intramolecula 94.74
4fhd_A 368 Spore photoproduct lyase; partial TIM-barrel, DNA 94.71
2xij_A762 Methylmalonyl-COA mutase, mitochondrial; isomerase 94.37
2i2x_B258 MTAC, methyltransferase 1; TIM barrel and helix bu 93.38
1y80_A210 Predicted cobalamin binding protein; corrinoid, fa 93.13
1xrs_B262 D-lysine 5,6-aminomutase beta subunit; TIM barrel, 92.75
3kp1_A763 D-ornithine aminomutase E component; 5 aminomutase 89.64
1req_B637 Methylmalonyl-COA mutase; isomerase, intramolecula 87.89
3ezx_A215 MMCP 1, monomethylamine corrinoid protein 1; N ter 85.61
3bul_A 579 Methionine synthase; transferase, reactivation con 83.09
1eiw_A111 Hypothetical protein MTH538; CHEY-like fold, flavo 82.6
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Back     alignment and structure
Probab=99.94  E-value=1.2e-27  Score=226.50  Aligned_cols=137  Identities=29%  Similarity=0.539  Sum_probs=110.4

Q ss_pred             ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--CCCHHHHHHHHHH
Q 019874          191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA  268 (334)
Q Consensus       191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--~~~l~~Ll~~l~~  268 (334)
                      +..++|++++|||++|+||.+|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|+++||.+.  ...+.+|++.|.+
T Consensus         3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~   82 (304)
T 2qgq_A            3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS   82 (304)
T ss_dssp             CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred             CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999999999999999999999999999998653  3579999999975


Q ss_pred             hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874          269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV  332 (334)
Q Consensus       269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v  332 (334)
                       ++  +..|+|+++++|..+++++  +..|++.+++|++++||+||+|+++|+.|+|+++.+++
T Consensus        83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~  141 (304)
T 2qgq_A           83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEEL  141 (304)
T ss_dssp             -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHH
T ss_pred             -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHH
Confidence             55  6789999889999999877  78888765559999999999999999999999998764
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Back     alignment and structure
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Back     alignment and structure
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Back     alignment and structure
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Back     alignment and structure
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Back     alignment and structure
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Back     alignment and structure
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Back     alignment and structure
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Back     alignment and structure
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Back     alignment and structure
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* Back     alignment and structure
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Back     alignment and structure
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} Back     alignment and structure
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica} Back     alignment and structure
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 Back     alignment and structure
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* Back     alignment and structure
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B* Back     alignment and structure
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} Back     alignment and structure
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A* Back     alignment and structure
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1olta_ 441 Oxygen-independent coproporphyrinogen III oxidase 99.19
d1r30a_ 312 Biotin synthase {Escherichia coli [TaxId: 562]} 99.02
d1tv8a_ 327 Molybdenum cofactor biosynthesis protein A MoaA {S 97.89
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 97.24
d7reqb2163 Methylmalonyl-CoA mutase beta subunit, C-terminal 95.88
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 95.35
d1xrsb1160 D-lysine 5,6-aminomutase beta subunit KamE, C-term 95.04
d3bula2156 Methionine synthase, C-terminal domain {Escherichi 93.15
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=6.2e-12  Score=122.23  Aligned_cols=123  Identities=11%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             CCCCCccccccccC--Cc-cccCCHHHHHHHHHHHHHC----CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 019874          202 CLGACTYCKTKHAR--GH-LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG  274 (334)
Q Consensus       202 C~~~CsfC~ip~~r--G~-~rsr~~e~Iv~Ei~~l~~~----G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~  274 (334)
                      |+++|+||..+...  .. ...+.++.+++|++...+.    .+..|.|-|.+.+....   ..+.+|++.|.+.++...
T Consensus        59 C~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~~---~~l~~ll~~l~~~~~~~~  135 (441)
T d1olta_          59 CHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLMKLLRENFQFNA  135 (441)
T ss_dssp             ESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHHHHHHHHSCEEE
T ss_pred             CCCCCCCCcCeeecCCCcchHHHHHHHHHHHHHHhhHhcCCCccceeEecCCCcCCCCH---HHHHHHHHHHhhhccccc
Confidence            99999999765322  22 2334578999999876542    35677777766554422   357888888876553111


Q ss_pred             CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874          275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV  332 (334)
Q Consensus       275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v  332 (334)
                      ...+.+ .++|..++++.  |..|++  .|+++++||+||+++++|+.|||.++.+++
T Consensus       136 ~~e~t~-E~~P~~~~~~~--l~~l~~--~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~  188 (441)
T d1olta_         136 DAEISI-EVDPREIELDV--LDHLRA--EGFNRLSMGVQDFNKEVQRLVNREQDEEFI  188 (441)
T ss_dssp             EEEEEE-EECSSSCCTHH--HHHHHH--TTCCEEEEEEECCCHHHHHHHTCCCCHHHH
T ss_pred             hhcccc-cccccccchHH--HHHHHH--hCCceEEecchhcchhhhhhhhcCCCHHHH
Confidence            223443 47999999866  777776  589999999999999999999999998875
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} Back     information, alignment and structure
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure