Citrus Sinensis ID: 019900

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----

MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL

ccccccccccccccccccccccccEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEEEEcccEEEEEEcccEEcHHHHHHcccEEEEEccccccEEEEEEccccccccEEEEEEcccEEEEEEcEEEEccEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEcccccccccEEccccccccccEEEEEEEccccccccEEEEcccccccccEEEEEccccEEEEEEccccccccccEEEEcccccccccccEEEEEEEEEcccccEEEEEEEccccccccEEEEEccccccccccccccccHHHHHHHcc

cccccccccccEEEccccccccccEEEEEccccccEEEEEEEccccccccccccccccccccccEEEcccEEEEccccEEEcHHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEccccccEEEEEEEEccccccccccccccccHHHcccHEEEEEEEcccccEEEEEccccccccccccHHHcccccEEEEEEEccccccEcEEEEEEcccccccccEEEEEcccEEEEEEccccccccccEEEcccccccccccccEEEEEEEEcccccEEEEEEEccccccccEEEEEccccccccccEEEccHHHHHHHHcc

mldydkrlqhsftahpkvdpytgemftfgyahtppyityrviskdgfmhdpvpitvsdpimmhdfaITENYAifmdlplyfrpkemvkenkliftfddtkkarfgilpryakneaqmkwfelpncfifhnanaweeedEVVLITCrldkpdldmVNGAVKEKLENFSNELYEMRFNLKTGLASqkrlsasavdfprvnecytgrkqryvYGTILDSIAKVTGIIKfdlhaepdeektklevggnvrgifdlgpgrfgseavfvprepgtsseedvgYLIFFShdektgksSVNVIDaktmsadpvavvelphrvpygfhafFVSEEQLEEQAKL

mldydkrlqhsftahpkvdpytGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKliftfddtkkarFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQkrlsasavdfprvnecytgrkqryvygTILDSIAKVTGIIKFDLhaepdeektklevggnvRGIFDLGPGRFGSEAVFVprepgtsseedVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL

***************PKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAE*****TKLEVGGNVRGIFDLGPGRFGSEAVFV**********DVGYLIFFSHDEK****SVNVIDAKTMSADPVAVVELPHRVPYGFHAFFV***********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		334	2.2.26 [Sep-21-2011]
Q8LP17		541	Carotenoid 9,10(9',10')-c	N/A	no	1.0	0.617	0.835	1e-170
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	1.0	0.615	0.838	1e-169
O65572		538	Carotenoid 9,10(9',10')-c	yes	no	0.985	0.611	0.816	1e-166
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.991	0.606	0.827	1e-165
O49675		595	Probable carotenoid cleav	no	no	0.940	0.527	0.383	1e-57
Q84K96		369	Zeaxanthin 7,8(7',8')-cle	N/A	no	0.910	0.823	0.393	5e-56
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.916	0.465	0.382	1e-55
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.925	0.511	0.359	3e-52
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.916	0.510	0.372	2e-51
Q9LRM7		577	9-cis-epoxycarotenoid dio	no	no	0.913	0.528	0.363	1e-49

>sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1	Back alignment and function desciption

 Score =  598 bits (1542), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 279/334 (83%), Positives = 308/334 (92%)

Query: 1   MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPI 60
           MLDYDKRL H+FTAHPKVDP+TGEMFTFGY+HT PY+TYRVISKDGFM DPVPIT+SDP+
Sbjct: 208 MLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTAPYVTYRVISKDGFMQDPVPITISDPV 267

Query: 61  MMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWF 120
           MMHDFAITENY+IFMDLPLYFRPKEMVK   LIF+FD TKKARFG+LPRYAK++  ++WF
Sbjct: 268 MMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWF 327

Query: 121 ELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTG 180
           ELPNCFIFHNANAWEEEDE+VLITCRL+ P+LD+V GAVKEKL+NFSNELYEMRFN+KTG
Sbjct: 328 ELPNCFIFHNANAWEEEDEIVLITCRLENPNLDVVGGAVKEKLDNFSNELYEMRFNMKTG 387

Query: 181 LASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE 240
            ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  KTKLE
Sbjct: 388 EASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLE 447

Query: 241 VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTM 300
           VGGNV+G++DLGPGRFGSEAV+VPR PGT SEED GYLIFF HDE TGKS V+VIDAK M
Sbjct: 448 VGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRM 507

Query: 301 SADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL 334
           SA+PVAVVELP RVPYGFHAFFV+E+QL+EQAK 
Sbjct: 508 SAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAKF 541

Cleaves a variety of carotenoids at the 9-10 and 9'-10' double bonds. Probably not involved in abscisic acid biosynthesis.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 4

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|O65572\|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q84K96\|ZCD_CROSA Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|Q9LRM7\|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		334
90991008		523	carotenoid cleavage dioxygenase1 [Citrus	0.961	0.613	0.996	0.0
90991006		523	carotenoid cleavage dioxygenase1 [Citrus	0.961	0.613	0.993	0.0
307592509		552	carotenoid cleavage dioxygenase 1 [Manih	1.0	0.605	0.889	1e-178
134285450		548	9-cis-epoxycarotenoid dioxygenase [Casta	1.0	0.609	0.883	1e-177
61654494		542	9,10[9',10']carotenoid cleavage dioxygen	1.0	0.616	0.880	1e-176
387763758		546	carotenoid cleavage dioxygenase 1 [Vitis	1.0	0.611	0.880	1e-176
387763760		546	carotenoid cleavage dioxygenase 1 [Vitis	1.0	0.611	0.880	1e-176
225450111		546	PREDICTED: carotenoid 9,10(9',10')-cleav	1.0	0.611	0.880	1e-176
387763764		546	carotenoid cleavage dioxygenase 1 [Vitis	1.0	0.611	0.877	1e-175
76560796		548	carotenoid cleavage dioxygenase 1 [Coffe	1.0	0.609	0.868	1e-174

>gi\|90991008\|dbj\|BAE92958.1\| carotenoid cleavage dioxygenase1 [Citrus sinensis]	Back alignment and taxonomy information

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/321 (99%), Positives = 320/321 (99%)

Query: 1   MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPI 60
           MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPI
Sbjct: 203 MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPI 262

Query: 61  MMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWF 120
           MMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWF
Sbjct: 263 MMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWF 322

Query: 121 ELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTG 180
           ELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTG
Sbjct: 323 ELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTG 382

Query: 181 LASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE 240
           LASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE
Sbjct: 383 LASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE 442

Query: 241 VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTM 300
           VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTM
Sbjct: 443 VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTM 502

Query: 301 SADPVAVVELPHRVPYGFHAF 321
           SADPVAVVELP RVPYGFHAF
Sbjct: 503 SADPVAVVELPQRVPYGFHAF 523

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|90991006\|dbj\|BAE92957.1\| carotenoid cleavage dioxygenase1 [Citrus unshiu] gi\|90991010\|dbj\|BAE92959.1\| carotenoid cleavage dioxygenase1 [Citrus limon]	Back alignment and taxonomy information

>gi\|307592509\|gb\|ADN65332.1\| carotenoid cleavage dioxygenase 1 [Manihot esculenta]	Back alignment and taxonomy information

>gi\|134285450\|gb\|ABO69703.1\| 9-cis-epoxycarotenoid dioxygenase [Castanea mollissima]	Back alignment and taxonomy information

>gi\|61654494\|gb\|AAX48772.1\| 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763758\|gb\|AFJ94677.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763760\|gb\|AFJ94678.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225450111\|ref\|XP_002278750.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Vitis vinifera] gi\|297736256\|emb\|CBI24894.3\| unnamed protein product [Vitis vinifera] gi\|387763762\|gb\|AFJ94679.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera] gi\|387763766\|gb\|AFJ94681.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763764\|gb\|AFJ94680.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|76560796\|gb\|ABA43900.1\| carotenoid cleavage dioxygenase 1 [Coffea canephora]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		334
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.982	0.609	0.818	4.1e-152
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.940	0.527	0.383	2e-56
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.913	0.509	0.382	3e-53
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.919	0.521	0.378	2.9e-48
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.922	0.528	0.342	6.6e-42
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.823	0.418	0.343	2.8e-39
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.823	0.476	0.338	1.5e-37
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.628	0.419	0.263	1.9e-27
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.946	0.651	0.281	3.7e-25
UNIPROTKB\|Q52008		490	lsdB "Lignostilbene-alpha,beta	0.943	0.642	0.276	8.5e-22

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1484 (527.5 bits), Expect = 4.1e-152, P = 4.1e-152
 Identities = 271/331 (81%), Positives = 304/331 (91%)

Query:     1 MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPI 60
             ++DYDKRL HSFTAHPKVDP TGEMFTFGY+HTPPY+TYRVISKDG MHDPVPIT+S+PI
Sbjct:   208 IIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPI 267

Query:    61 MMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWF 120
             MMHDFAITE YAIFMDLP++FRPKEMVKE K+I++FD TKKARFG+LPRYAK+E  ++WF
Sbjct:   268 MMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWF 327

Query:   121 ELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTG 180
             ELPNCFIFHNANAWEEEDEVVLITCRL+ PDLDMV+G VKEKLENF NELYEMRFN+KTG
Sbjct:   328 ELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKTG 387

Query:   181 LASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE 240
              ASQK+LSASAVDFPR+NECYTG+KQRYVYGTILDSIAKVTGIIKFDLHAE +  K  LE
Sbjct:   388 SASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLE 447

Query:   241 VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTM 300
             VGGN++GI+DLG GR+GSEA++VPRE   ++EED GYLIFF HDE TGKS V VIDAKTM
Sbjct:   448 VGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTM 504

Query:   301 SADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 331
             SA+PVAVVELPHRVPYGFHA FV+EEQL+EQ
Sbjct:   505 SAEPVAVVELPHRVPYGFHALFVTEEQLQEQ 535

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0016118 "carotenoid catabolic process" evidence=IDA

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016121 "carotene catabolic process" evidence=IMP

GO:0016124 "xanthophyll catabolic process" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q52008 lsdB "Lignostilbene-alpha,beta-dioxygenase isozyme III" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84KG5	CCD_CROSA	1, ., 1, 4, ., 9, 9, ., n, 4	0.8277	0.9910	0.6062	N/A	no
Q8LP17	CCD1_PEA	1, ., 1, 4, ., 9, 9, ., n, 4	0.8353	1.0	0.6173	N/A	no
O65572	CCD1_ARATH	1, ., 1, 4, ., 9, 9, ., n, 4	0.8162	0.9850	0.6115	yes	no
Q94IR2	CCD1_PHAVU	1, ., 1, 4, ., 9, 9, ., n, 4	0.8383	1.0	0.6151	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		334
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-109
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	9e-90
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	6e-77
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	3e-10

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

 Score =  687 bits (1774), Expect = 0.0
 Identities = 296/334 (88%), Positives = 316/334 (94%)

Query: 1   MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPI 60
           +LDYDKRL+HSFTAHPKVDP+TGEMFTFGY+H PPYITYRVISKDG MHDPVPIT+S+PI
Sbjct: 212 LLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPI 271

Query: 61  MMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWF 120
           MMHDFAITENYAIFMDLPLYFRPKEMVKE K I+TFD TKKARFG+LPRYAK+E  ++WF
Sbjct: 272 MMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWF 331

Query: 121 ELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTG 180
           ELPNCFIFHNANAWEEEDEVVLITCRL+ PDLDMVNG VKEKLENF NELYEMRFN+KTG
Sbjct: 332 ELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTG 391

Query: 181 LASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE 240
            ASQK+LSASAVDFPRVNE YTGRKQRYVYGTILDSIAKVTGIIKFDLHAEP+  K KLE
Sbjct: 392 AASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLE 451

Query: 241 VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTM 300
           VGGNV+GIFDLGPGRFGSEA+FVPREPGT+SEED GYLIFF HDE TGKSSVNVIDAKTM
Sbjct: 452 VGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTM 511

Query: 301 SADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL 334
           SADPVAVVELPHRVPYGFHAFFV+EEQL+EQAKL
Sbjct: 512 SADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 545

Length = 545

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		334
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.62

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

Probab=100.00  E-value=1.3e-88  Score=682.21  Aligned_cols=334  Identities=89%  Similarity=1.424  Sum_probs=293.9

Q ss_pred             CCCCCCCCCCCCCCCCeecCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEEEEEeCCee
Q 019900            1 MLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLY   80 (334)
Q Consensus         1 ~~d~~g~l~~~~tAHPk~Dp~tG~l~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~V~~~~P~~   80 (334)
                      ++||+|+|..+||||||+||.||||+||||+..+++++|++++++|++.+.+++++|.++|||||||||||+||+++|++
T Consensus       212 ~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~  291 (545)
T PLN02491        212 LLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLY  291 (545)
T ss_pred             ecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcc
Confidence            47899999989999999999999999999998778999999999999999899999999999999999999999999999


Q ss_pred             cCHHHHhhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecCCeEEEEEEecCCCCcccccchhh
Q 019900           81 FRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVK  160 (334)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.+|+++++.++.|+|++++||+||||++++.+.++||++|+||+||++|||||+|+||+|.|+++++.+....+...
T Consensus       292 ~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~~Ivvd~~~~~~~~~~~~~~~~~  371 (545)
T PLN02491        292 FRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVNGKVK  371 (545)
T ss_pred             cCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccCCeEEEEEeccCCCcccccccccc
Confidence            99999988777889999999999999999875556899999999999999999999999999999998765432222222


Q ss_pred             hccccCcceEEEEEEeCCCCceeEEeccCCCccCcccCCCCCCCCcceEEEeccCCCCCcCeEEEEEcCCCCccccceec
Q 019900          161 EKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLE  240 (334)
Q Consensus       161 ~~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~yry~y~~~~~~~~~~~~l~k~D~~t~~~~~~~~~~  240 (334)
                      +......++|+|||||+++|+++++.|++.++|||+||+++.||+|||+|++..++.+.+++|+|+|++++..+++.+.+
T Consensus       372 ~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~  451 (545)
T PLN02491        372 EKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLE  451 (545)
T ss_pred             ccccccCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccc
Confidence            22223468999999999999999999999999999999999999999999998876667899999999975322322222


Q ss_pred             cCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCceEEEEcCCcCCCCcCc
Q 019900          241 VGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHA  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~iP~gfHG  320 (334)
                      .|++..+.|++++++|+|||+||||+++.+++|||||||++|+|..+++|+|+||||++|++|||||++||++||+||||
T Consensus       452 ~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG  531 (545)
T PLN02491        452 VGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHA  531 (545)
T ss_pred             cccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccc
Confidence            34444467999999999999999996542258999999999999999999999999999999999999999999999999


Q ss_pred             cCcChhhHHHhhcC
Q 019900          321 FFVSEEQLEEQAKL  334 (334)
Q Consensus       321 ~w~~~~~~~~~~~~  334 (334)
                      +|+++++|.+|+.+
T Consensus       532 ~fv~~~~l~~~~~~  545 (545)
T PLN02491        532 FFVTEEQLQEQAKL  545 (545)
T ss_pred             cCcCHHHHHHhhcC
Confidence            99999999998754

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		334
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		2e-53
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		7e-20

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 182/339 (53%), Gaps = 30/339 (8%) Query: 3 DYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITVSDPIM 61 D+D +L + AHPK+DP TGE+ Y PY+ Y DG D V I + P M Sbjct: 211 DFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTM 270 Query: 62 MHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFE 121 +HDFAITEN + D + F+ +EM++ + D K +RFG+LP++A + ++M W + Sbjct: 271 IHDFAITENLVVVPDHQVVFKLQEMLRGGSPV-VLDAAKTSRFGVLPKHAADASEMAWVD 329 Query: 122 LPNCFIFHNANAWEEE--DEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKT 179 +P+CF FH NAWE+E EVV+I + D E E + L E+R + +T Sbjct: 330 VPDCFCFHLWNAWEDEATGEVVVIGSCMTPAD-----SIFNESDERLESVLTEIRLDART 384 Query: 180 GLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEE 235 G ++++ + + ++ VN GR+ RY Y + + KV+G K DL E Sbjct: 385 GRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLST---GE 441 Query: 236 KTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTS--SEEDVGYLIFFSHDEKTGKSSVN 293 TK F+ G GRFG E FVP +P + ED GY++ F HDE+ G S + Sbjct: 442 LTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELL 491 Query: 294 VIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 332 V++A M + A V+LP RVP+GFH F++ ++LE QA Sbjct: 492 VVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		334
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-102
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	1e-102
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	3e-68

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

 Score =  307 bits (789), Expect = e-102
 Identities = 76/338 (22%), Positives = 137/338 (40%), Gaps = 35/338 (10%)

Query: 3   DYDKRLQHS--FTAHPKVDP----YTGEMFTFGY---AHTPPYITYRVISKDGFMHDPVP 53
           D    L      +AHP++DP      G+     +   +     +T   +   G +     
Sbjct: 169 DLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKT 228

Query: 54  ITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKL---IFTFDDTKKARFGILPRY 110
            T      +HDFAIT +YAIF+   +       +   +       F   K A+  ++PR 
Sbjct: 229 ETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPR- 287

Query: 111 AKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDK-PDLDMVNGAVKEKLENFS-N 168
             +  ++K   +   F+FH+ANA+EE  +++L +   +  P +D          +N    
Sbjct: 288 --DGGEIKRIPVQAGFVFHHANAFEENGKIILDSICYNSLPQVDTDGDFRSTNFDNLDPG 345

Query: 169 ELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSI---AKVTGIIK 225
           +L+    +       ++ + +   +FP V+    GR  RYVY          A +  I+K
Sbjct: 346 QLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILK 405

Query: 226 FDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDE 285
            DL +                 +    P  F  E +FVPR  G    ED G+L+   +  
Sbjct: 406 VDLES-------------GTETLRSFAPHGFAGEPIFVPRPGG--VAEDDGWLLCLIYKA 450

Query: 286 KTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFV 323
              +S + ++DA+ ++A  +A ++L H +PY  H  + 
Sbjct: 451 DLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWA 488

PyMOL of 2biw

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		334
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

Probab=100.00  E-value=9.6e-83  Score=635.18  Aligned_cols=306  Identities=25%  Similarity=0.413  Sum_probs=271.9

Q ss_pred             CCCCCCC-C-CCCCCCCeecCC------CCcEEEEEeecCCCc-EEEEEEcCCCCeEeeEEEEcCCCccccccccCCCEE
Q 019900            2 LDYDKRL-Q-HSFTAHPKVDPY------TGEMFTFGYAHTPPY-ITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYA   72 (334)
Q Consensus         2 ~d~~g~l-~-~~~tAHPk~Dp~------tG~l~~fg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~iHdfa~Teny~   72 (334)
                      +||+|.| . .+||||||+||.      ||||+|||++.+++. ++|++++++|++.+..++++|.++|||||||||||+
T Consensus       168 ~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiTeny~  247 (490)
T 2biw_A          168 DDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPHYA  247 (490)
T ss_dssp             CCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEECSSEE
T ss_pred             eccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeeccCCEE
Confidence            6899999 5 489999999999      999999999986544 899999999999999999999999999999999999


Q ss_pred             EEEeCCeecCHHHHhhcCc---eeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcccceeecCCeEEEEEEecCC
Q 019900           73 IFMDLPLYFRPKEMVKENK---LIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDK  149 (334)
Q Consensus        73 V~~~~P~~~~~~~~~~~~~---~~~~~~~~~~tr~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~~~~  149 (334)
                      ||+++|+++|+.+++.+++   .++.|+|++++||+||||+ +  +.++||++|+||+||++||||++|+||+|+|+|++
T Consensus       248 V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~-~--~~v~~f~~~~~f~fH~~NA~Ee~~~Iv~d~~~~~~  324 (490)
T 2biw_A          248 IFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD-G--GEIKRIPVQAGFVFHHANAFEENGKIILDSICYNS  324 (490)
T ss_dssp             EEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT-S--CCCEEEEECCCEEEEEEEEEEETTEEEEEEEEESC
T ss_pred             EEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC-C--CccEEEecCCCeEEecccceecCCeEEEEEeccCC
Confidence            9999999999999886542   4799999999999999998 3  46899999999999999999999999999999988


Q ss_pred             CCcccccchhhh--ccccCcceEEEEEEeCCCCceeEEeccCCCccCcccCCCCCCCCcceEEEeccC---CCCCcCeEE
Q 019900          150 PDLDMVNGAVKE--KLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILD---SIAKVTGII  224 (334)
Q Consensus       150 ~~~~~~~~~~~~--~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~yry~y~~~~~---~~~~~~~l~  224 (334)
                      ..+.........  ......++|+||+|||++|+++++.|.+.++|||+||+++.||+|||+|+++.+   ....+++|+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~  404 (490)
T 2biw_A          325 LPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAIL  404 (490)
T ss_dssp             CCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEEE
T ss_pred             cccccccccccccccccCCCceEEEEEEECCCCceEEEeccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeEE
Confidence            654111111111  112346899999999999999999999999999999999999999999999875   345689999


Q ss_pred             EEEcCCCCccccceeccCCceeeEEEcCCCCcccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCCcEEEEEeCCCCCCCc
Q 019900          225 KFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADP  304 (334)
Q Consensus       225 k~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EDDG~lL~~v~d~~~~~s~L~VlDA~~l~~gp  304 (334)
                      |+|++|++.             +.|++++++++|||+||||+ + +++|||||||++|+|..+++|+|+||||++|++||
T Consensus       405 K~D~~tg~~-------------~~~~~g~g~~~~EPvFVPrp-~-~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~p  469 (490)
T 2biw_A          405 KVDLESGTE-------------TLRSFAPHGFAGEPIFVPRP-G-GVAEDDGWLLCLIYKADLHRSELVILDAQDITAPA  469 (490)
T ss_dssp             EEETTTTEE-------------EEEECTTTEECCCCEEEECT-T-CCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSCC
T ss_pred             EEECCCCCE-------------EEEECCCCccccCCEEecCC-C-CCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcCc
Confidence            999998763             56889999999999999996 4 56899999999999999999999999999999999


Q ss_pred             eEEEEcCCcCCCCcCccCcCh
Q 019900          305 VAVVELPHRVPYGFHAFFVSE  325 (334)
Q Consensus       305 vAr~~Lp~~iP~gfHG~w~~~  325 (334)
                      |||++||++||+||||+|+++
T Consensus       470 vArv~lP~rvP~GfHG~wv~~  490 (490)
T 2biw_A          470 IATLKLKHHIPYPLHGSWAQT  490 (490)
T ss_dssp             SEEEECSSCCCCCCCEEEEEC
T ss_pred             eEEEeCCCcCCCCccccccCC
Confidence            999999999999999999863

PyMOL of 2biw

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00