Citrus Sinensis ID: 019917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHVLFTVPSSTKILIYVSVI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHcccEcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEEc
Coil and Loop (DISEMBL)
mykireikNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHvfsdfsslgtgketeeTNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNeeifkifppswhvpylLNIQFCKKTRKQLEGILdnlterpdVGTLLLALQRTIEFEDELAekfggdsrsseigldieeigrpennrqnVSDIRKKYERKLAanqgnsteekdgnkdlsvpgagVCLHVLFTVPSSTKILIYVSVI
Flexible Loop (DISEMBL)
mykireiknkaeqsetMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQifegaelakldkterRYAWIKRrirtneeifkifppswhvPYLLNIQFCKKTRKQLEGILdnlterpdvGTLLLALQRTIEFEDElaekfggdsrsseigldieeigrpennrqnvsDIRKKYERKLaanqgnsteekdgnkdlsVPGAGVCLHVlftvpsstkILIYVSVI
Low Complexity Region (SEG)
MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHVLFTVPSSTKILIYVSVI
Disordered region (IsUnstruct)
*****************VQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGT*****ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDEL***********************************************************VPGAGVCLHVLFTVPSSTKILIYVS**
Disordered Region (DISOPRED)
********************ICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSS****************SDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGG************************************************************LHVLFTVPSSTKILIYVSVI
Disordered Region (DISEMBL)
MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAA************KDLSVPGAGVCLHVLFTVPSSTKILIYVSVI
Disordered Region (DISPRO)
*YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQ***********DLSVPGAGVCLHVLFTVPSSTKILIYVSVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKxxxxxxxxxxxxxxxxxxxxxIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNxxxxxxxxxxxxxxxxxxxxxPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHVLFTVPSSTKILIYVSVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q5ZLD7	831	Vacuolar protein sorting-	yes	no	0.745	0.299	0.410	7e-50
Q8CCB4	832	Vacuolar protein sorting-	yes	no	0.745	0.299	0.406	1e-49
Q5VIR6	699	Vacuolar protein sorting-	no	no	0.745	0.356	0.410	2e-49
Q5R5J4	699	Vacuolar protein sorting-	yes	no	0.745	0.356	0.410	2e-49
P87129	756	Vacuolar protein sorting-	yes	no	0.730	0.322	0.285	2e-29
P34561	798	Vacuolar protein sorting-	yes	no	0.727	0.304	0.332	3e-29
P47061	822	Vacuolar protein sorting-	yes	no	0.745	0.302	0.228	4e-10

>sp|Q5ZLD7|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 161/258 (62%), Gaps = 9/258 (3%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 109 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 168

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 169 QYGEVANLLQGVVNVLEHFNKYMGIPQIRQLSERVKAAQNELGQQILADFEEAFPSQGTK 228

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 229 RPGGPSNVLR---DACLVANVLDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 285

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct: 286 RYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 345

Query: 237 ALQRTIEFEDELAEKFGG 254
           A+QRT  FE  LA++F G
Sbjct: 346 AIQRTTNFEGLLAKRFSG 363

May be involved in retrograde transport of early and late endosomes to the late Golgi.
Gallus gallus (taxid: 9031)

>sp|Q8CCB4|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 162/258 (62%), Gaps = 9/258 (3%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAW+KR++   EE + ++FP  W +   ++++FC  TR +L  I+    +  +V  LL 
Sbjct: 287 RYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLF 346

Query: 237 ALQRTIEFEDELAEKFGG 254
           A+QRT  FE  LA++F G
Sbjct: 347 AIQRTTNFEGFLAKRFSG 364

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Mus musculus (taxid: 10090)

>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 161/258 (62%), Gaps = 9/258 (3%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLF 346

Query: 237 ALQRTIEFEDELAEKFGG 254
           A+QRT  FE  LA++F G
Sbjct: 347 AIQRTTNFEGFLAKRFSG 364

May be involved in retrograde transport of early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Homo sapiens (taxid: 9606)

>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 161/258 (62%), Gaps = 9/258 (3%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct: 110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSD----FSSLGTG 118
           QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +D    F S GT 
Sbjct: 170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query: 119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
           +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct: 230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query: 178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
           RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct: 287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 346

Query: 237 ALQRTIEFEDELAEKFGG 254
           A+QRT  FE  LA++F G
Sbjct: 347 AIQRTTNFEGFLAKRFSG 364

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Pongo abelii (taxid: 9601)

>sp|P87129|VPS53_SCHPO Vacuolar protein sorting-associated protein 53 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps53 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 137/252 (54%), Gaps = 8/252 (3%)

Query: 7   IKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKE 66
           +++ AE +++ + ++  +IK LDFAK+++ T++T L RL MLV+A E+L+ +   +++ E
Sbjct: 91  LQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQNQKFGE 150

Query: 67  AAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNL 126
           A + ++A  QL + F+ YR + +I  L       ++     VF  F S    +       
Sbjct: 151 AISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFKKESGMRGGF 210

Query: 127 ----LQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
               +Q L++ C  +D       E ++  +CR +L  + ++F E  E   L+   RRY W
Sbjct: 211 SPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFMKVFRENEEAGSLENLPRRYTW 270

Query: 182 IKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
            K+ ++T +++ K IFPP W V + L   FC++T+  L  +L +  +R  +   + +L++
Sbjct: 271 FKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLLKD--DRLSLQVFVASLEQ 328

Query: 241 TIEFEDELAEKF 252
           T+EFE  +  +F
Sbjct: 329 TLEFESFIDHRF 340

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P34561|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 10/253 (3%)

Query: 4   IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
           I  I+ + + S+ +V+E+ RDIK+LD AK+++T +IT LH L +L++ VE L     K+ 
Sbjct: 101 IGSIRERTKSSDEIVREMTRDIKQLDIAKRNLTASITTLHHLHILLTGVESLGAWVDKKD 160

Query: 64  YKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDF-SSLGTGKETE 122
           Y   A QL A+  +   F+AY++  +I  L  +   +K  L   +  D  ++  TG+   
Sbjct: 161 YSSIARQLPAILNVLQLFDAYKESDQIANLSGQLDKLKASLTIQLAKDLKNAFQTGQ--- 217

Query: 123 ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYAW 181
              L  +++D C V  ALE +V+E  V  F  ++L+ Y  I+ +  E A LDK + RY W
Sbjct: 218 ---LSDRITDMCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKW 274

Query: 182 IKRRIRTNEE--IFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
             R++   E   +  IFP  WH+   L  +FC  TR  L  I+    +  D   L  A+Q
Sbjct: 275 FVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTRRRQDLDWKLLGHAIQ 334

Query: 240 RTIEFEDELAEKF 252
            T  FE  L ++F
Sbjct: 335 HTKMFEALLTKRF 347

May be involved in retrograde transport of early and late endosomes to the late Golgi.

Caenorhabditis elegans (taxid: 6239)

>sp|P47061|VPS53_YEAST Vacuolar protein sorting-associated protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS53 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 119/258 (46%), Gaps = 9/258 (3%)

Query: 4   IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQ 63
            +E ++ +  +E  +  +   I  LD AKK++T ++T    L +L  +  Q   + S+  
Sbjct: 73  FKETQDVSASTELTISNLTEGISYLDIAKKNLTHSLTLFQNLKILTDSYIQCNELLSQGS 132

Query: 64  YKEAAAQLEAVNQLCSH-FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
           +K+  +  + +  L  + F +Y+ + +I  L      +K    S +  ++++L +G    
Sbjct: 133 FKKMVSPYKIMCSLAENTFISYKSLDEINYLLSSISRLKGDTLSKIKQNYNALFSGGNIS 192

Query: 123 E--TNLLQQLSD-ACLVVDALEPSVREELVNNFCRRELTSYEQIFE-GAELAKLDKTERR 178
           E  T L  +L + AC ++D  + S R ++++    + L   ++IF    E   L+   RR
Sbjct: 193 EHDTALTMELREGACELLDC-DTSTRAQMIDWCLDKLLFEMKEIFRVDDEAGSLENLSRR 251

Query: 179 YAWIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGIL--DNLTERPDVGTLL 235
           Y + K+ +   N +    F   W +   L   F   T K L+ +L  +   + P +   +
Sbjct: 252 YIYFKKILNNFNSKFADYFLKDWEMAVRLTTTFYHITHKDLQTLLKREFKDKNPSIDLFM 311

Query: 236 LALQRTIEFEDELAEKFG 253
            ALQ T++FE  +  +F 
Sbjct: 312 TALQSTLDFEKYIDVRFS 329

Involved in retrograde transport from early and late endosomes to late Golgi by linking the vesicle through the t-SNARE TGL1 to the Golgi, leading to the membrane fusion between late Golgi and endosomal vesicles.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
255583561	816	Vacuolar protein sorting protein, putati	0.988	0.404	0.873	1e-165
225443241	826	PREDICTED: vacuolar protein sorting-asso	0.991	0.400	0.848	1e-163
449463607	823	PREDICTED: vacuolar protein sorting-asso	0.991	0.402	0.836	1e-159
356532932	820	PREDICTED: vacuolar protein sorting-asso	0.991	0.403	0.824	1e-157
356532934	837	PREDICTED: vacuolar protein sorting-asso	0.991	0.395	0.824	1e-157
356555815	820	PREDICTED: vacuolar protein sorting-asso	0.991	0.403	0.824	1e-157
356555817	837	PREDICTED: vacuolar protein sorting-asso	0.991	0.395	0.824	1e-156
357448261	851	Vacuolar protein sorting-associated prot	0.991	0.388	0.770	1e-154
12322335	840	unknown protein [Arabidopsis thaliana]	0.931	0.370	0.823	1e-145
297852752	828	heat-intolerant 1 [Arabidopsis lyrata su	0.931	0.375	0.815	1e-144

>gi|255583561|ref|XP_002532537.1| Vacuolar protein sorting protein, putative [Ricinus communis] gi|223527749|gb|EEF29853.1| Vacuolar protein sorting protein, putative [Ricinus communis]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 289/331 (87%), Positives = 302/331 (91%), Gaps = 1/331 (0%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQ+MAS
Sbjct: 70  MYKIREIKTKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQLMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEE NLLQ LSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 TEENNLLQHLSDACLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRRIRTNEEI+KIFP SWHVPY L IQFCKKTRKQLEGILDNL E+PDVGTLLLALQR
Sbjct: 250 WIKRRIRTNEEIWKIFPLSWHVPYRLCIQFCKKTRKQLEGILDNLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG + S EIG +IEEIGR ++N QNVSDIRKKYERKLAANQG+  EEK
Sbjct: 310 TLEFEDELAEKFGGGTSSREIGNEIEEIGR-DSNSQNVSDIRKKYERKLAANQGSGIEEK 368

Query: 301 DGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
           DG+KDLSVPGAG     + +      + IYV
Sbjct: 369 DGSKDLSVPGAGFNFRGIVSSCFEPHLTIYV 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443241|ref|XP_002271570.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Vitis vinifera] gi|298204761|emb|CBI25259.3| unnamed protein product [Vitis vinifera]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/331 (84%), Positives = 297/331 (89%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRD+PKITELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVRE+LV NFC RELTSY QIFEGAELAKLDK ERRYA
Sbjct: 190 TEETNLLQQLSDACLVVDALEPSVREDLVKNFCSRELTSYRQIFEGAELAKLDKAERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+RTNEEI+KIFPPSWHV YLL IQFCK TR QL  ILDNL E+PDVGTLLLALQR
Sbjct: 250 WIKRRLRTNEEIWKIFPPSWHVAYLLCIQFCKMTRTQLVEILDNLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFE+ELAEKFGGD+R  +IG DIEE+ R EN  Q VSDIRKKYE+KLAANQG+ TEEK
Sbjct: 310 TLEFEEELAEKFGGDTRRKDIGNDIEEVDRGENKSQTVSDIRKKYEKKLAANQGSGTEEK 369

Query: 301 DGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
           DGNKDLSVPGAG     + +      + +YV
Sbjct: 370 DGNKDLSVPGAGFNFRGIISSCFEPHLTVYV 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463607|ref|XP_004149523.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Cucumis sativus] gi|449505810|ref|XP_004162574.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Cucumis sativus]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/331 (83%), Positives = 293/331 (88%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           M KIREIK KAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MSKIREIKTKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRD PKITELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDNPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
            EETNLLQQLSDAC VVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 KEETNLLQQLSDACFVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRRIRTNEEI+KIFPPSWHVPY L IQFCKKTRKQLE ILDNL E+PDV TLLLALQR
Sbjct: 250 WIKRRIRTNEEIWKIFPPSWHVPYRLCIQFCKKTRKQLEDILDNLKEKPDVATLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +R  E G  IEE GR ++N QNVSDIRKKYE+KLA +QG   +EK
Sbjct: 310 TLEFEDELAEKFGGGARGKESGNGIEEFGREDSNSQNVSDIRKKYEKKLAVHQGPENDEK 369

Query: 301 DGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
           +G KD+SVPGAG     + +      + +Y+
Sbjct: 370 NGIKDMSVPGAGFNFRGIVSSCFEPHLTVYI 400

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532932|ref|XP_003535023.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 1 [Glycine max]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/331 (82%), Positives = 295/331 (89%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRDIPKI ELR+KFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKIVELRDKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 250 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILGNLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 310 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGTNSSSSAMDIRKKYEKKLAAHQGGDSEEK 369

Query: 301 DGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
           DG+KDL+VPGAG     + +      + +YV
Sbjct: 370 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYV 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532934|ref|XP_003535024.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 2 [Glycine max]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/331 (82%), Positives = 295/331 (89%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 87  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 146

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQYKEAAAQLEAVNQLCSHFEAYRDIPKI ELR+KFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 147 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKIVELRDKFKNIKQILKSHVFSDFSSLGTGKE 206

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 207 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 266

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 267 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILGNLKEKPDVGTLLLALQR 326

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 327 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGTNSSSSAMDIRKKYEKKLAAHQGGDSEEK 386

Query: 301 DGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
           DG+KDL+VPGAG     + +      + +YV
Sbjct: 387 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYV 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555815|ref|XP_003546225.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 1 [Glycine max]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/331 (82%), Positives = 295/331 (89%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQY+EAAAQLEAVNQLCSHFEAYRDIPKI ELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 130 KRQYREAAAQLEAVNQLCSHFEAYRDIPKIIELREKFKNIKQILKSHVFSDFSSLGTGKE 189

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 190 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 249

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 250 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILANLKEKPDVGTLLLALQR 309

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 310 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGNNSSSSALDIRKKYEKKLAAHQGGDSEEK 369

Query: 301 DGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
           DG+KDL+VPGAG     + +      + +YV
Sbjct: 370 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYV 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555817|ref|XP_003546226.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 2 [Glycine max]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/331 (82%), Positives = 295/331 (89%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 87  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 146

Query: 61  KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
           KRQY+EAAAQLEAVNQLCSHFEAYRDIPKI ELREKFKNIKQILKSHVFSDFSSLGTGKE
Sbjct: 147 KRQYREAAAQLEAVNQLCSHFEAYRDIPKIIELREKFKNIKQILKSHVFSDFSSLGTGKE 206

Query: 121 TEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYA 180
           TEETNLLQQLSDACLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYA
Sbjct: 207 TEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYA 266

Query: 181 WIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQR 240
           WIKRR+R+NEEI+KIFP SWHV Y L I FCKKTRKQLE IL NL E+PDVGTLLLALQR
Sbjct: 267 WIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKTRKQLEDILANLKEKPDVGTLLLALQR 326

Query: 241 TIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEK 300
           T+EFEDELAEKFGG +++ EIG +IEEIG+  N+  +  DIRKKYE+KLAA+QG  +EEK
Sbjct: 327 TLEFEDELAEKFGGGTQNREIGNEIEEIGKGNNSSSSALDIRKKYEKKLAAHQGGDSEEK 386

Query: 301 DGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
           DG+KDL+VPGAG     + +      + +YV
Sbjct: 387 DGSKDLAVPGAGFNFRGIVSSCFEPHLTVYV 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448261|ref|XP_003594406.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355483454|gb|AES64657.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/357 (77%), Positives = 297/357 (83%), Gaps = 26/357 (7%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
           MYKIREIK KA QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS
Sbjct: 70  MYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 129

Query: 61  KRQYKEAAAQLE--------------------------AVNQLCSHFEAYRDIPKITELR 94
           KRQYKEAAAQLE                          AVNQLCSHFEAYRDIPKI ELR
Sbjct: 130 KRQYKEAAAQLEETCAVELNVATLLCIYKRLIPQLKLVAVNQLCSHFEAYRDIPKIIELR 189

Query: 95  EKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCR 154
           EKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSV+EELVNNFC 
Sbjct: 190 EKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVKEELVNNFCN 249

Query: 155 RELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKT 214
           RELTSYEQIFEGAELAKLDKTERRYAWIKRR+R+NEEI+KIFP SWHV Y L I FCKKT
Sbjct: 250 RELTSYEQIFEGAELAKLDKTERRYAWIKRRMRSNEEIWKIFPSSWHVSYRLCILFCKKT 309

Query: 215 RKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENN 274
           RKQLE IL NL E+PDVGTLLLALQRT+EFEDELAEKFGG +++ EIG +IEEIGR  N+
Sbjct: 310 RKQLEDILSNLKEKPDVGTLLLALQRTLEFEDELAEKFGGGTQNREIGNEIEEIGRSPNS 369

Query: 275 RQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHVLFTVPSSTKILIYV 331
             N SDIRKKYE+KLAA+QG+ +EE+DG+KDL+VPGAG     + +      + +YV
Sbjct: 370 SSNASDIRKKYEKKLAAHQGSESEERDGSKDLAVPGAGFNFRGIVSSCFEPHLTVYV 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322335|gb|AAG51191.1|AC079279_12 unknown protein [Arabidopsis thaliana]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/311 (82%), Positives = 277/311 (89%)

Query: 2   YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61
           +KI+EIK+KAEQSE MVQEICRDIKKLDFAKK+ITTTITALHRLTMLVSAVEQLQVMASK
Sbjct: 95  HKIQEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSAVEQLQVMASK 154

Query: 62  RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET 121
           RQYKEAAAQLEAVNQLC+HFEAYRD+PKITELREK  NIKQILKSHVFSDFSSLGTGKET
Sbjct: 155 RQYKEAAAQLEAVNQLCNHFEAYRDVPKITELREKLNNIKQILKSHVFSDFSSLGTGKET 214

Query: 122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAW 181
           EETNLLQ+LSD+CLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYAW
Sbjct: 215 EETNLLQKLSDSCLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAW 274

Query: 182 IKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRT 241
           IKRRIRTNEEI+KIFP SWHVPY L IQFCK+TRKQ+E IL N+ E+P V  LLLALQ T
Sbjct: 275 IKRRIRTNEEIWKIFPASWHVPYRLCIQFCKQTRKQVESILVNMKEKPVVAILLLALQST 334

Query: 242 IEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKD 301
           +EFE EL +KFGG   + +I  DIEEIG  E+N QN+S IRKKYE+K AA+Q     EK 
Sbjct: 335 VEFEKELEKKFGGGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAASQETEENEKT 394

Query: 302 GNKDLSVPGAG 312
           GNKDLSV GAG
Sbjct: 395 GNKDLSVTGAG 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852752|ref|XP_002894257.1| heat-intolerant 1 [Arabidopsis lyrata subsp. lyrata] gi|297340099|gb|EFH70516.1| heat-intolerant 1 [Arabidopsis lyrata subsp. lyrata]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/315 (81%), Positives = 279/315 (88%), Gaps = 4/315 (1%)

Query: 2   YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61
           +KI+EIK+KAEQSE MVQEICRDIKKLDFAKK+ITTTITALHRLTMLVSAVEQLQVMASK
Sbjct: 71  HKIQEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSAVEQLQVMASK 130

Query: 62  RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET 121
           RQYKEAAAQLEAVNQLC+HFEAYRD+PKITELREK  NIKQILKSHVFSDFSSLGTGKET
Sbjct: 131 RQYKEAAAQLEAVNQLCNHFEAYRDVPKITELREKLNNIKQILKSHVFSDFSSLGTGKET 190

Query: 122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAW 181
           EETNLLQ+LSD+CLVVDALEPSVREELVNNFC RELTSYEQIFEGAELAKLDKTERRYAW
Sbjct: 191 EETNLLQKLSDSCLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAW 250

Query: 182 IKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRT 241
           IKRRIRTNEEI+KIFP SWHVPY L IQFCK+TRKQ+E IL N+ E+P V  LLLALQRT
Sbjct: 251 IKRRIRTNEEIWKIFPASWHVPYRLCIQFCKQTRKQVESILVNMKEKPVVAILLLALQRT 310

Query: 242 IEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQ----GNST 297
           +EFE EL +KFGG   + +I  DIEEIG  E+N QN+S IRKKYE+K AA+Q        
Sbjct: 311 VEFEKELEKKFGGGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAASQESEENGFQ 370

Query: 298 EEKDGNKDLSVPGAG 312
           +EK GNKDLSV GAG
Sbjct: 371 QEKTGNKDLSVTGAG 385

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2036396	569	AT1G50970 "AT1G50970" [Arabido	0.808	0.474	0.690	4.5e-91
UNIPROTKB|F1RHI3	832	VPS53 "Uncharacterized protein	0.877	0.352	0.371	1.7e-47
UNIPROTKB|Q5VIR6	699	VPS53 "Vacuolar protein sortin	0.745	0.356	0.410	2e-47
UNIPROTKB|E2R1D2	832	VPS53 "Uncharacterized protein	0.745	0.299	0.410	2.7e-47
UNIPROTKB|Q5ZLD7	831	VPS53 "Vacuolar protein sortin	0.745	0.299	0.410	5.8e-47
MGI|MGI:1915549	832	Vps53 "vacuolar protein sortin	0.745	0.299	0.406	7.5e-47
ZFIN|ZDB-GENE-041114-199	832	vps53 "vacuolar protein sortin	0.754	0.302	0.403	1.3e-46
UNIPROTKB|E1BJW7	832	VPS53 "Uncharacterized protein	0.745	0.299	0.406	1.6e-46
DICTYBASE|DDB_G0285901	838	DDB_G0285901 "Vps53-like domai	0.907	0.361	0.352	5.2e-43
POMBASE|SPAC3A12.15	756	vps53 "GARP complex subunit Vp	0.745	0.329	0.285	1.4e-30

TAIR|locus:2036396 AT1G50970 "AT1G50970" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 190/275 (69%), Positives = 217/275 (78%)

Query:     2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASK 61
             +KI+EIK+KAEQ+E MVQ+IC DIKKLDFAKK+ITT +TAL RLTMLVSAV+QLQVM SK
Sbjct:    71 HKIQEIKSKAEQTEAMVQDICSDIKKLDFAKKNITTAVTALSRLTMLVSAVQQLQVMTSK 130

Query:    62 RQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET 121
             RQYKEAA QLEA+N+LC+HF+AY D+PKI ELREK KNIKQILK HVFSDFSSLGTG ET
Sbjct:   131 RQYKEAATQLEAINELCNHFKAYMDLPKIMELREKLKNIKQILKFHVFSDFSSLGTGTET 190

Query:   122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEGAELAKLDKTERRYAW 181
             EE  LL++LSD+CLVVDALEPSVREEL+NNFC RELTSYEQI+ GAEL  LD+ E  Y  
Sbjct:   191 EELFLLKKLSDSCLVVDALEPSVREELINNFCSRELTSYEQIYVGAELKTLDEIELIYNQ 250

Query:   182 IKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRT 241
             +   IR N+  + IFP SWHVPY L IQ  +KTR Q+E IL NL E+ DV  LLL L+RT
Sbjct:   251 LSCLIRKNQGKWTIFPASWHVPYRLCIQLSRKTRVQVESILVNLKEKSDVEKLLLELKRT 310

Query:   242 IEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQ 276
             +EFE EL  KFGG      IG DI  IG   NN Q
Sbjct:   311 LEFERELEMKFGG---GGSIGDDI--IGGGGNNSQ 340

GO:0005215 "transporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=ISS

UNIPROTKB|F1RHI3 VPS53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 503 (182.1 bits), Expect = 1.7e-47, P = 1.7e-47
 Identities = 113/304 (37%), Positives = 179/304 (58%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHRYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACL+ + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLIANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W++   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWYMAERIAVEFCHITRTELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNS 296
             A+QRT  FE  LA++F G + +   G   +    P +    + D       +LA  +G+S
Sbjct:   347 AIQRTTNFEGFLAKRFSGCTLTD--GTLKKPESPPASTNPFLEDEAAPEMEELAMEKGDS 404

Query:   297 TEEK 300
              + K
Sbjct:   405 EQPK 408

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|Q5VIR6 VPS53 "Vacuolar protein sorting-associated protein 53 homolog" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 106/258 (41%), Positives = 161/258 (62%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGG 254
             A+QRT  FE  LA++F G
Sbjct:   347 AIQRTTNFEGFLAKRFSG 364

GO:0015031 "protein transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000938 "GARP complex" evidence=IDA

UNIPROTKB|E2R1D2 VPS53 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 501 (181.4 bits), Expect = 2.7e-47, P = 2.7e-47
 Identities = 106/258 (41%), Positives = 162/258 (62%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W++   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWYMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGG 254
             A+QRT  FE  LA++F G
Sbjct:   347 AIQRTTNFEGFLAKRFSG 364

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|Q5ZLD7 VPS53 "Vacuolar protein sorting-associated protein 53 homolog" [Gallus gallus (taxid:9031)]

 Score = 498 (180.4 bits), Expect = 5.8e-47, P = 5.8e-47
 Identities = 106/258 (41%), Positives = 161/258 (62%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   109 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 168

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   169 QYGEVANLLQGVVNVLEHFNKYMGIPQIRQLSERVKAAQNELGQQILADFEEAFPSQGTK 228

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   229 RPGGPSNVLR---DACLVANVLDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 285

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   286 RYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLF 345

Query:   237 ALQRTIEFEDELAEKFGG 254
             A+QRT  FE  LA++F G
Sbjct:   346 AIQRTTNFEGLLAKRFSG 363

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

MGI|MGI:1915549 Vps53 "vacuolar protein sorting 53 (yeast)" [Mus musculus (taxid:10090)]

 Score = 497 (180.0 bits), Expect = 7.5e-47, P = 7.5e-47
 Identities = 105/258 (40%), Positives = 162/258 (62%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DACLV + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAW+KR++   EE + ++FP  W +   ++++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGG 254
             A+QRT  FE  LA++F G
Sbjct:   347 AIQRTTNFEGFLAKRFSG 364

GO:0000938 "GARP complex" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-041114-199 vps53 "vacuolar protein sorting 53 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 495 (179.3 bits), Expect = 1.3e-46, P = 1.3e-46
 Identities = 103/255 (40%), Positives = 159/255 (62%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  KR
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
             QY E A  L+ V  +  HF+ Y  IP+I +L E+ K  +  L + + +DF      + ++
Sbjct:   170 QYGEVANLLQGVVNVLEHFQKYMGIPQIRQLSERVKAAQSELGTQILADFEETFPAQGSK 229

Query:   123 ETNLLQ-QLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYA 180
             ++      L DACLV + L+P +++E++  F R+ L+ Y  +F E  ++A LDK +RRYA
Sbjct:   230 KSGGPSIVLRDACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYA 289

Query:   181 WIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
             WIKR++   EE + ++FP  W +   + ++FC  TR +L  ++       +V  LL A+Q
Sbjct:   290 WIKRQLVDYEEKYGRMFPEEWCMTERIAVEFCHITRTELTKLMRTRAREIEVKLLLFAIQ 349

Query:   240 RTIEFEDELAEKFGG 254
             RT  FE  LA++F G
Sbjct:   350 RTTNFEGLLAKRFSG 364

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BJW7 VPS53 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 494 (179.0 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 105/258 (40%), Positives = 161/258 (62%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI++IK+KAE+SE MV+EI RDIK+LD AK+H+TT+IT L+ L ML   V+ L+ M  +R
Sbjct:   110 KIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRR 169

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFS----SLGTG 118
             QY E A  L+ V  +  HF  Y  IP+I +L E+ K  +  L   + +DF     S GT 
Sbjct:   170 QYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTK 229

Query:   119 KETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTER 177
             +    +N+L+   DAC V + L+P +++E++  F ++ L+ Y  +F E  ++A LDK +R
Sbjct:   230 RPGGPSNVLR---DACQVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDR 286

Query:   178 RYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLL 236
             RYAWIKR++   EE + ++FP  W++   + ++FC  TR +L  I+    +  +V  LL 
Sbjct:   287 RYAWIKRQLVDYEEKYGRMFPREWYMAERIAVEFCHITRTELAKIMRTRAKEIEVKLLLF 346

Query:   237 ALQRTIEFEDELAEKFGG 254
             A+QRT  FE  LA++F G
Sbjct:   347 AIQRTTNFEGFLAKRFSG 364

GO:0000938 "GARP complex" evidence=IEA

DICTYBASE|DDB_G0285901 DDB_G0285901 "Vps53-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 462 (167.7 bits), Expect = 5.2e-43, P = 5.2e-43
 Identities = 109/309 (35%), Positives = 165/309 (53%)

Query:     3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
             KI +IK+KA QSE MV EIC+DIK LD+AKK++TT IT L RL M+V  VEQL+ M  K+
Sbjct:   111 KITDIKSKANQSEQMVTEICKDIKSLDYAKKNLTTAITTLKRLHMMVMGVEQLKEMVDKK 170

Query:    63 QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETE 122
             QY   A  LEA  Q    F+ YR+ PKI  L ++  NI+  +K  ++ DF+        +
Sbjct:   171 QYGTVAKLLEATAQFAEGFKDYRESPKIYALNKELDNIRSRVKDQIYEDFNQYVPYTSNQ 230

Query:   123 -ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIFEG-AELAKLDKTERRYA 180
              + N   +   +C V+DAL   V+++ +  FC  +L+SY++ F   +E   LD T+RR+ 
Sbjct:   231 IKPNEENRWKSSCYVIDALGSEVKKDFLRWFCGSQLSSYKKAFGSQSESYTLDSTDRRFG 290

Query:   181 WIKRRIRT-NEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
             W  R+I+   EE   +FPP W +   ++ +FC  TR  L  +L       +V  L+ AL+
Sbjct:   291 WWSRQIKIFREEYALVFPPEWCMEEQISYEFCILTRLDLSEVLLINKNSIEVPQLIKALK 350

Query:   240 RTIEFEDELAEKFGGDSRS-SEIGLDIEEIGRPENNRQNVS--DIRKKYERKLAANQGNS 296
             +T+ FE++L E F  +++  S   +        ENN  +    D            + NS
Sbjct:   351 KTLTFENKLYELFAQNNQKLSSPTMSSTPSNESENNSDDSDQDDSDDDNGENQVDGENNS 410

Query:   297 TEEKDGNKD 305
                  GN +
Sbjct:   411 NNNNKGNSE 419

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC3A12.15 vps53 "GARP complex subunit Vps53 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 346 (126.9 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 74/259 (28%), Positives = 143/259 (55%)

Query:     1 MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMAS 60
             + ++  +++ AE +++ + ++  +IK LDFAK+++ T++T L RL MLV+A E+L+ +  
Sbjct:    85 LQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQ 144

Query:    61 KRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKE 120
              +++ EA + ++A  QL + F+ YR + +I  L       ++     VF  F S    KE
Sbjct:   145 NQKFGEAISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK-KE 203

Query:   121 TE-----ETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDK 174
             +        + +Q L++ C  +D       E ++  +CR +L  + ++F E  E   L+ 
Sbjct:   204 SGMRGGFSPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFMKVFRENEEAGSLEN 263

Query:   175 TERRYAWIKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGT 233
               RRY W K+ ++T +++ K IFPP W V + L   FC++T+  L  +L +  +R  +  
Sbjct:   264 LPRRYTWFKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLLKD--DRLSLQV 321

Query:   234 LLLALQRTIEFEDELAEKF 252
              + +L++T+EFE  +  +F
Sbjct:   322 FVASLEQTLEFESFIDHRF 340

GO:0000938 "GARP complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006896 "Golgi to vacuole transport" evidence=ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
pfam04100	375	pfam04100, Vps53_N, Vps53-like, N-terminal	1e-116

>gnl|CDD|217892 pfam04100, Vps53_N, Vps53-like, N-terminal

 Score =  339 bits (872), Expect = e-116
 Identities = 136/259 (52%), Positives = 171/259 (66%), Gaps = 3/259 (1%)

Query: 3   KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKR 62
           KI+EIK+KAE +E MV+EI RDIK+LDFAKK++TT+IT LHRL MLV+ VE L  +  KR
Sbjct: 72  KIKEIKSKAESTEEMVKEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALIQKR 131

Query: 63  QYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSL-GTGKET 121
            Y EAA+ L+A+ QL +HF  Y+ + +I  L E    +K  L S +F DF S  G+  E 
Sbjct: 132 SYGEAASPLQAILQLLNHFIKYKSVDEIANLSESISKLKGSLLSQIFQDFKSAFGSQGEH 191

Query: 122 EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQIF-EGAELAKLDKTERRYA 180
               LLQ+LSDACLV DAL+PSVREEL+  FC ++L  YEQIF E  E A LDK +RRYA
Sbjct: 192 RTGLLLQKLSDACLVADALDPSVREELIKWFCSQQLEEYEQIFRENEEAAWLDKIDRRYA 251

Query: 181 WIKRRIRTNEEIFK-IFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQ 239
           W KR +R  EE +  IFP  WHV   L ++FC  TRKQL  IL    +  DV  LL ALQ
Sbjct: 252 WFKRLLRDFEEKYGPIFPADWHVAERLTVEFCHVTRKQLAKILVRRDKELDVKLLLFALQ 311

Query: 240 RTIEFEDELAEKFGGDSRS 258
            T+EFE  L ++F   S+ 
Sbjct: 312 STLEFEKFLDKRFSNTSKK 330

Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events. Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	100.0
KOG2180	793	consensus Late Golgi protein sorting complex, subu	100.0
PF10475	291	DUF2450: Protein of unknown function N-terminal do	97.56
PF10191	766	COG7: Golgi complex component 7 (COG7); InterPro:	96.83
PF06248	593	Zw10: Centromere/kinetochore Zw10; InterPro: IPR00	96.81
PF15469	182	Sec5: Exocyst complex component Sec5	95.14
PF07393	710	Sec10: Exocyst complex component Sec10; InterPro:	92.38
KOG2115	951	consensus Vacuolar sorting protein VPS45 [Intracel	91.36
KOG2176	800	consensus Exocyst complex, subunit SEC15 [Intracel	85.85
KOG0412	773	consensus Golgi transport complex COD1 protein [In	85.62

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=100.00  E-value=1.6e-88  Score=671.11  Aligned_cols=291  Identities=49%  Similarity=0.768  Sum_probs=262.4

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 019917            2 YKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF   81 (334)
Q Consensus         2 ~kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F   81 (334)
                      ++|.+||++|++||+||++||+|||+||+||||||.|||+||||||||+||++|+.++++|+|+|||++|+||++|++||
T Consensus        71 ~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F  150 (383)
T PF04100_consen   71 EKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHF  150 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhh-hhHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHHH
Q 019917           82 EAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETN-LLQQLSDACLVVDALEPSVREELVNNFCRRELTSY  160 (334)
Q Consensus        82 ~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~-~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~eY  160 (334)
                      ++|++||+|++|++++..|++.|+.||+.||+.++++....++. ...+|.+||.|||+||+++|++||+|||++||++|
T Consensus       151 ~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY  230 (383)
T PF04100_consen  151 KPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEY  230 (383)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987433322222 45789999999999999999999999999999999


Q ss_pred             HHhcC-CcccccccchhhhHHHHHHhhhhhhhhc-CcCCCcccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 019917          161 EQIFE-GAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLAL  238 (334)
Q Consensus       161 ~~iF~-~~Ea~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL~~~~~~~dv~~Ll~aL  238 (334)
                      +++|+ ++|+||||||+|||+||||+|++|++.+ .+||++|+||++||..||.+||+||..+|++.++++||++||+||
T Consensus       231 ~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aL  310 (383)
T PF04100_consen  231 RRIFRENDEAASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKAL  310 (383)
T ss_pred             HHHHcccccccchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Confidence            99997 6899999999999999999999999876 899999999999999999999999999999989999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcCCcchhhcCCCCCCCCChHHHHHHHHHHHHhccCCCcccccCCCCCCCCCCceeEEEe
Q 019917          239 QRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHVL  318 (334)
Q Consensus       239 q~Tl~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~a~~ir~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  318 (334)
                      |+|++||++|++||+|.+....   .                ++...|.                     .....+|+|+
T Consensus       311 q~T~~FE~~L~~rF~~~~~~~~---~----------------~~~~~e~---------------------~~~~~~f~g~  350 (383)
T PF04100_consen  311 QKTLEFEKELAKRFAGSTDESQ---E----------------IEKKKEM---------------------KEIAENFKGI  350 (383)
T ss_pred             HHHHHHHHHHHHHhcccccccc---c----------------ccccccc---------------------cccccccccc
Confidence            9999999999999987743200   0                0000000                     0001169999


Q ss_pred             eecCCCcceeeeee
Q 019917          319 FTVPSSTKILIYVS  332 (334)
Q Consensus       319 is~~~~~~~~~~~~  332 (334)
                      ||+.|+|.|.+||.
T Consensus       351 IS~~FepyL~iyv~  364 (383)
T PF04100_consen  351 ISSCFEPYLSIYVD  364 (383)
T ss_pred             hHHhhHhhHHHHHH
Confidence            99999999999985

>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-86  Score=676.12  Aligned_cols=292  Identities=52%  Similarity=0.813  Sum_probs=270.5

Q ss_pred             CchhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019917            1 MYKIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSH   80 (334)
Q Consensus         1 ~~kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~   80 (334)
                      +++|++||++|++||.||++||+|||+||+||||||+|||+|+||||||+||++|+.|+++|+|+|+|++|+||++|++|
T Consensus        85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~  164 (793)
T KOG2180|consen   85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH  164 (793)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc-hhhhhhHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHH
Q 019917           81 FEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKET-EETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTS  159 (334)
Q Consensus        81 F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~-~~~~~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~e  159 (334)
                      |++|++||+|++|++.++.+|..|..||+.||+++|+|++. ..+...+.|.|||+|+|+|+|++|+++|+|||.+||.+
T Consensus       165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~e  244 (793)
T KOG2180|consen  165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEE  244 (793)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998777 33445688999999999999999999999999999999


Q ss_pred             HHHhcCC-cccccccchhhhHHHHHHhhhhhhhhc-CcCCCcccccHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 019917          160 YEQIFEG-AELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLA  237 (334)
Q Consensus       160 Y~~iF~~-~Ea~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL~~~~~~~dv~~Ll~a  237 (334)
                      |.+||++ .|+|||||++|||+||||.|++|++.| .|||++|+|++|||.+||+.||+||..||.++.+++||++||.|
T Consensus       245 y~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v~lll~A  324 (793)
T KOG2180|consen  245 YEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDVKLLLFA  324 (793)
T ss_pred             HHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccHHHHHHH
Confidence            9999985 899999999999999999999999999 69999999999999999999999999999998899999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCcCCcchhhcCCCCCCCCChHHHHHHHHHHHHhccCCCcccccCCCCCCCCCCceeEEE
Q 019917          238 LQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHV  317 (334)
Q Consensus       238 Lq~Tl~FE~~L~~rF~~~~~~~~~~~d~~~~~~~~~~~~~a~~ir~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  317 (334)
                      ||+|++||++|++||+|++..          |++.++++.-                              |.+.|+|+|
T Consensus       325 lq~TleFE~~L~kRF~g~~~~----------~~~~~ns~~~------------------------------~k~~~~f~~  364 (793)
T KOG2180|consen  325 LQSTLEFEKFLDKRFSGGTLT----------GKPEKNSQFE------------------------------PKERFNFEG  364 (793)
T ss_pred             HHHHHHHHHHHHHHhcCCCCC----------CCCccccccc------------------------------cccccchhh
Confidence            999999999999999998754          2222222111                              113388999


Q ss_pred             eeecCCCcceeeeee
Q 019917          318 LFTVPSSTKILIYVS  332 (334)
Q Consensus       318 ~is~~~~~~~~~~~~  332 (334)
                      +|||-|.|..++|+.
T Consensus       365 ~isScFEPhLtlyI~  379 (793)
T KOG2180|consen  365 AISSCFEPHLTLYIE  379 (793)
T ss_pred             HHHHhcccchhhhhh
Confidence            999999999999974

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known

Probab=97.56  E-value=0.0071  Score=58.26  Aligned_cols=153  Identities=14%  Similarity=0.275  Sum_probs=109.5

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHhhh--------------hHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 019917            2 YKIREIKNKAEQSETMVQEICRDIK--------------KLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEA   67 (334)
Q Consensus         2 ~kI~~Ik~kA~~SE~~V~eIt~DIk--------------~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~   67 (334)
                      +.|.+|++....+-..|+.+=+.++              ++..-|+||......|+.+..+..+...|+.++...+|..|
T Consensus        67 ~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~A  146 (291)
T PF10475_consen   67 SSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGA  146 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            3456666666666655555544443              34444677777889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHhcChhHHHH
Q 019917           68 AAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREE  147 (334)
Q Consensus        68 a~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~  147 (334)
                      ..++..+.++++.   |+.+.-++.|..++..+...+..++-.+|...-.   .-++.....+-+|...++- -..+.++
T Consensus       147 l~li~~~~~~l~~---l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk-~~~~~dk  219 (291)
T PF10475_consen  147 LDLIEECQQLLEE---LKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGK-TQSAMDK  219 (291)
T ss_pred             HHHHHHHHHHHHh---cccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhh-hHHHHHH
Confidence            9999999999965   5556677778888888888888878777776421   1123345677788877763 2457777


Q ss_pred             HHHHHHHHhHHHHH
Q 019917          148 LVNNFCRRELTSYE  161 (334)
Q Consensus       148 lI~wf~~~~L~eY~  161 (334)
                      +...|++-....-.
T Consensus       220 l~~~f~~~i~~~~~  233 (291)
T PF10475_consen  220 LQMHFTSAIHSTTF  233 (291)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777765544433

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []

Probab=96.83  E-value=0.36  Score=52.79  Aligned_cols=239  Identities=13%  Similarity=0.232  Sum_probs=155.4

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 019917            3 KIREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFE   82 (334)
Q Consensus         3 kI~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~   82 (334)
                      ++..|+++...-|..-..--.-+.+||.+|.++..+-.+|+==.-+.+...++..+....+|..+|.-|..|.+=+..|.
T Consensus        85 ~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~  164 (766)
T PF10191_consen   85 QMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQ  164 (766)
T ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            34445554433333222233447889999999999999999888888888888889999999999999999999888874


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHHHHH
Q 019917           83 AYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQ  162 (334)
Q Consensus        83 ~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~eY~~  162 (334)
                         ++|.-.+=...++.+++.|...+-...-..+....      ....+....|...+|..  .++.++|+.-.......
T Consensus       165 ---~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~------~~~~~~~~~if~~i~R~--~~l~~~Y~~~r~~~l~~  233 (766)
T PF10191_consen  165 ---DVPDYEERRQQLEALKNRLEALVSPQLVQALNSRD------VDAAKEYVKIFSSIGRE--PQLEQYYCKCRKAPLQR  233 (766)
T ss_pred             ---CCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcC------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHH
Confidence               67777777777777777777665444333332111      12333444566666532  45566666655555555


Q ss_pred             hcCC---cc--cccccchhhhHHHHHHhhhhhh-h-hc--CcCCCccc-ccHHHHHHHHHHH---HHHHHHHHHhccCCC
Q 019917          163 IFEG---AE--LAKLDKTERRYAWIKRRIRTNE-E-IF--KIFPPSWH-VPYLLNIQFCKKT---RKQLEGILDNLTERP  229 (334)
Q Consensus       163 iF~~---~E--a~~Ldni~RRy~Wfkr~L~~~e-~-~~--~iFP~~W~-v~~~L~~~Fc~~T---r~dL~~lL~~~~~~~  229 (334)
                      ....   .+  ....+-+.   .|+-.+|...+ + .|  .+||..-. ++.-++..++.++   ...|...+.......
T Consensus       234 ~W~~~~~~~~~~~~~~~L~---~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~  310 (766)
T PF10191_consen  234 LWQEYCQSDQSQSFAEWLP---SFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPET  310 (766)
T ss_pred             HHHHHhhhccchhHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchh
Confidence            5321   11  11111122   35555565543 3 45  69999876 4444556666555   445566665333333


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019917          230 DVGTLLLALQRTIEFEDELAEKFGGD  255 (334)
Q Consensus       230 dv~~Ll~aLq~Tl~FE~~L~~rF~~~  255 (334)
                      ....|+..-+.|..|=+.+...|...
T Consensus       311 ~L~~L~~l~~~t~~Fa~~l~~~l~~~  336 (766)
T PF10191_consen  311 KLETLIELYQATEHFARNLEHLLSSL  336 (766)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            47899999999999999999999975

COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells

Probab=96.81  E-value=0.9  Score=48.00  Aligned_cols=214  Identities=14%  Similarity=0.221  Sum_probs=137.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc--ccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 019917           33 KHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHF--EAYRDIPKITELREKFKNIKQILKSHVFS  110 (334)
Q Consensus        33 rNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F--~~YksIp~I~~L~~~~~~i~~~L~~qI~~  110 (334)
                      +..+..+.+|++|+-+-.++++.+.....++|-++|..|..+..++..-  .++.+..-+..|..++...++.|..++-.
T Consensus        93 ~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~  172 (593)
T PF06248_consen   93 EENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSE  172 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677788899999999999999999999999999999999999886  34556677788889999999999999988


Q ss_pred             hhhhcCC---CCC------c----------hhhhh--hHhHhhhhhHHHhcChhHHHHHHHHHHHHhHHHHHH-----hc
Q 019917          111 DFSSLGT---GKE------T----------EETNL--LQQLSDACLVVDALEPSVREELVNNFCRRELTSYEQ-----IF  164 (334)
Q Consensus       111 DF~~~~~---~~~------~----------~~~~~--~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L~eY~~-----iF  164 (334)
                      .|+....   .+.      .          .++..  ...+-.|+.+++.|+... +.+-+.++++.+.+.-.     .+
T Consensus       173 ~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l-~~~~~~Ll~~ii~PlI~~p~~~~~  251 (593)
T PF06248_consen  173 EWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKL-KKFSKFLLEHIIKPLISHPSSIVS  251 (593)
T ss_pred             HHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHH-HHHHHHHHHHHHHHHhcCCCCccc
Confidence            8886431   001      0          00111  233446666666665432 33444444444444221     11


Q ss_pred             CC-ccc-c--------------cccchhhhHHHHHHhhhhhhhhcCcCCCcccccHHHHHHHHHHHHHHHHHHH-Hhc-c
Q 019917          165 EG-AEL-A--------------KLDKTERRYAWIKRRIRTNEEIFKIFPPSWHVPYLLNIQFCKKTRKQLEGIL-DNL-T  226 (334)
Q Consensus       165 ~~-~Ea-~--------------~Ldni~RRy~Wfkr~L~~~e~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~lL-~~~-~  226 (334)
                      .. .+. +              .--+.+--|.=+..++.-..+....-|..|.   .|...|-..+..+|...| .+. .
T Consensus       252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~---~l~~~~g~~i~~~ls~~lI~~~L~  328 (593)
T PF06248_consen  252 VEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDS---SLSESFGDHIWPRLSELLISNCLS  328 (593)
T ss_pred             ccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchh---HHHHHHHHHHHHHHHHHHHHhhCc
Confidence            10 011 0              1113445576676666665554433466676   788888888888886555 322 2


Q ss_pred             C--CCC---HHHHHHHHHHHHHHHHHHHH
Q 019917          227 E--RPD---VGTLLLALQRTIEFEDELAE  250 (334)
Q Consensus       227 ~--~~d---v~~Ll~aLq~Tl~FE~~L~~  250 (334)
                      .  +-+   ...+-..+..|.+||+.|..
T Consensus       329 ~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~  357 (593)
T PF06248_consen  329 PAIPTSASELQEFEEVLESVEEFEEALKE  357 (593)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  112   34567788999999999885

These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus

>PF15469 Sec5: Exocyst complex component Sec5

Probab=95.14  E-value=1.9  Score=38.40  Aligned_cols=107  Identities=12%  Similarity=0.281  Sum_probs=81.6

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccCC
Q 019917            6 EIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYR   85 (334)
Q Consensus         6 ~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Yk   85 (334)
                      .+.+...++...-..+-+.+-.--.--.++-.++..|+|.+-|.+.=.+|+..+++++|..+..-+.-++.+.   +.|+
T Consensus        44 ~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~---~~~~  120 (182)
T PF15469_consen   44 KLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLF---EKYK  120 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHH---HHhh
Confidence            3344444444444444444444444446888999999999999999999999999999999999997777765   4555


Q ss_pred             -CchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019917           86 -DIPKITELREKFKNIKQILKSHVFSDFSSL  115 (334)
Q Consensus        86 -sIp~I~~L~~~~~~i~~~L~~qI~~DF~~~  115 (334)
                       .++-+..++.+++.+-..++.++...+...
T Consensus       121 ~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~  151 (182)
T PF15469_consen  121 QQVPVFQKVWSEVEKIIEEFREKLWEKLLSP  151 (182)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             889999999999999999999887765543

>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins []

Probab=92.38  E-value=19  Score=39.03  Aligned_cols=239  Identities=15%  Similarity=0.241  Sum_probs=155.0

Q ss_pred             hHHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHH-hhc---CHHHHHHHHHHHHHH
Q 019917            4 IREIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSA--VEQLQVMA-SKR---QYKEAAAQLEAVNQL   77 (334)
Q Consensus         4 I~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~a--v~qL~~~~-~~r---~Y~e~a~lL~av~~L   77 (334)
                      .+.+-.+-...-..|..|..-...++.-+..-..++..++.++-+.+.  ...|..+. .-.   +-.++|..+.-+..+
T Consensus         8 f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~l   87 (710)
T PF07393_consen    8 FQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRL   87 (710)
T ss_pred             HHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHH
Confidence            344555555556667777777788888888888899999999977664  35666663 222   336777777655555


Q ss_pred             HHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhhhhHhHhhhhhHHHhcChhHHHHHHHHHHHHhH
Q 019917           78 CSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCRREL  157 (334)
Q Consensus        78 ~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~~~~~~~~~~~L~~aC~vvD~L~~~~k~~lI~wf~~~~L  157 (334)
                      ..-..   ++|......+.+......+-..+...|+.....+.      ...|+.+-.++-.++...  .+|+.|+++.-
T Consensus        88 s~~~~---~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d------~~~M~~~A~vL~~fngg~--~~i~~fi~k~~  156 (710)
T PF07393_consen   88 SKELS---DIPGFEEARENIEKYCEIFENALLREFEIAYREGD------YERMKEFAKVLLEFNGGS--SCIDFFINKHE  156 (710)
T ss_pred             HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCc--HHHHHHHHhCh
Confidence            54333   88888888999999999999999999998764322      367888888888888766  68888888642


Q ss_pred             HHH--HHh---------------cCCcc--cccccchhhhHHHHHHhhhhhhhhc-CcCCCcccccHHHHHHHHHHHHHH
Q 019917          158 TSY--EQI---------------FEGAE--LAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQ  217 (334)
Q Consensus       158 ~eY--~~i---------------F~~~E--a~~Ldni~RRy~Wfkr~L~~~e~~~-~iFP~~W~v~~~L~~~Fc~~Tr~d  217 (334)
                      --+  ..+               ..+++  ....+.++.=|..++..++.-...- .|||+.=.|=..++..++.--=.+
T Consensus       157 ~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~  236 (710)
T PF07393_consen  157 FFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQE  236 (710)
T ss_pred             hhhhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence            222  111               11111  1223345555566666655543333 799997777777666666544333


Q ss_pred             -HHHHHHhccCCCCHHHHHHHHH----HHHHHHHHHHHHhCC
Q 019917          218 -LEGILDNLTERPDVGTLLLALQ----RTIEFEDELAEKFGG  254 (334)
Q Consensus       218 -L~~lL~~~~~~~dv~~Ll~aLq----~Tl~FE~~L~~rF~~  254 (334)
                       +..+|... ...+...++.+|+    .|..|=..|..-+.+
T Consensus       237 ~i~~lL~~a-~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~  277 (710)
T PF07393_consen  237 YIESLLEEA-SSISTLAYLRTLHGLYSQTKKLVDDLKEFFSG  277 (710)
T ss_pred             HHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             45666533 3456666676665    566666666666443

; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm

>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.36  E-value=8.1  Score=42.93  Aligned_cols=113  Identities=14%  Similarity=0.331  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHhhhhHh--------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 019917            3 KIREIKNKAEQSETMVQEICRDIKKLD--------------FAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAA   68 (334)
Q Consensus         3 kI~~Ik~kA~~SE~~V~eIt~DIk~LD--------------~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a   68 (334)
                      ..++|+.++.++=+-|+++-..|+.+|              .+.+|++..-.-|+=+.-+-.+...++.+++..+|-+|.
T Consensus       276 ~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~AL  355 (951)
T KOG2115|consen  276 SLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGAL  355 (951)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHH
Confidence            456778888888888887777777766              466777777777777777778888999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 019917           69 AQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLG  116 (334)
Q Consensus        69 ~lL~av~~L~~~F~~YksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~  116 (334)
                      +++.-+.+++.- ...-+|+.+..|...+..+...+..-+..+|..+.
T Consensus       356 dlI~t~q~~L~g-~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~  402 (951)
T KOG2115|consen  356 DLIKTIQELLKG-SELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS  402 (951)
T ss_pred             HHHHHHHHHHhh-hhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876 77788999999999998888888877888998654

>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.85  E-value=12  Score=41.08  Aligned_cols=67  Identities=19%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 019917            5 REIKNKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQL   71 (334)
Q Consensus         5 ~~Ik~kA~~SE~~V~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL   71 (334)
                      .+...+-.++-.-+.....|+.+.-.-+||+|.+|..++.=--....+..|+++++.|+|=-+-..+
T Consensus        97 sd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktl  163 (800)
T KOG2176|consen   97 SDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTL  163 (800)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3344444455556666788889999999999999999999777778888999999999996544333

>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.62  E-value=51  Score=36.10  Aligned_cols=96  Identities=16%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             HHHHHhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH------HhcccCCCchHHHH
Q 019917           19 QEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLC------SHFEAYRDIPKITE   92 (334)
Q Consensus        19 ~eIt~DIk~LD~AKrNLT~SIT~LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~------~~F~~YksIp~I~~   92 (334)
                      ..+..+|++||.||.=+-.++.--+-+.-|-++.+-+...+...+|..+|.++.-...|-      .+++.-....+|..
T Consensus       101 e~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~  180 (773)
T KOG0412|consen  101 ETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISD  180 (773)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhh
Confidence            456689999999999888888777778888889999999999999999999887765542      35666777888877


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q 019917           93 LREKFKNIKQILKSHVFSDFSS  114 (334)
Q Consensus        93 L~~~~~~i~~~L~~qI~~DF~~  114 (334)
                      =.+.+.+.+..|..-+.+.|..
T Consensus       181 ~~~~L~~a~e~L~~l~~~~f~e  202 (773)
T KOG0412|consen  181 PYETLKEAKERLSKLFKERFTE  202 (773)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777655555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 57/337 (16%), Positives = 119/337 (35%), Gaps = 78/337 (23%)

Query: 9   NKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAA 68
           N  E    M+Q++   I     ++   ++ I    +L  + S   +L+ +   + Y+   
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLR-IHSIQAELRRLLKSKPYENCL 247

Query: 69  AQLEAVNQLCSHFEAYRDIP-KI---TELREKFKNIKQILKSHVFSDFSSLG-TGKETEE 123
             L  V      + A+ ++  KI   T  ++    +     +H+  D  S+  T  E + 
Sbjct: 248 LVLLNVQNA-KAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 124 TNLL--------QQL-SDAC----LVVDALEPSVREELV--NNFCRRELTSYEQIFEGAE 168
             LL        Q L  +        +  +  S+R+ L   +N+          I E + 
Sbjct: 306 --LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SS 362

Query: 169 LAKLDKTERR--YAWIKRRIRTNEEIFKIFPPSWHVPY-LLNIQFCKKTRKQLEGILDNL 225
           L  L+  E R  +           +   +FPPS H+P  LL++ +    +  +  +++ L
Sbjct: 363 LNVLEPAEYRKMF-----------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 226 T------ERPDVGT-----LLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPE-- 272
                  ++P   T     + L L+  +E E  L      D  +     D +++  P   
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLD 470

Query: 273 --------------NNRQNVSDIRKKY------ERKL 289
                          + + ++  R  +      E+K+
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 42/319 (13%), Positives = 89/319 (27%), Gaps = 106/319 (33%)

Query: 80  HFEAYRDIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLLQQLSDACLVVDA 139
           H   + D  +  E + ++K+I  + +     +F      K+ ++      LS     +D 
Sbjct: 2   HHHHHMDF-ETGEHQYQYKDILSVFEDAFVDNFDC----KDVQDM-PKSILSKE--EIDH 53

Query: 140 L--EPSVREE---LVNNFCRRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRT------ 188
           +            L      ++    ++  E             Y ++   I+T      
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-------RINYKFLMSPIKTEQRQPS 106

Query: 189 -NEEIF-----------KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDV----- 231
               ++           ++F   ++V          +   +L   L  L    +V     
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAK-YNVSR-------LQPYLKLRQALLELRPAKNVLIDGV 158

Query: 232 ---GTLLLALQ--RTIEFEDELAEKFG------GDSRSSEIGLDI-------------EE 267
              G   +AL    + + + ++   F        +  S E  L++               
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 268 IGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGVCLHVLFTVPSST-- 325
                N +  +  I+ +  R L          K             CL VL  V ++   
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLK--------SKPYEN---------CLLVLLNVQNAKAW 259

Query: 326 -------KILI---YVSVI 334
                  KIL+   +  V 
Sbjct: 260 NAFNLSCKILLTTRFKQVT 278

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 64/402 (15%), Positives = 106/402 (26%), Gaps = 125/402 (31%)

Query: 1   MYKIREIKNKAEQSETMVQEICRDIKKLD---FAKKHIT-----TTI-TALHRL------ 45
           M  I+  + +     T +    RD    D   FAK +++       +  AL  L      
Sbjct: 95  MSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 46  ----------TMLVSAV----EQLQVMASK------RQYKEAAAQLEAVNQLCSHFEAYR 85
                     T +   V    +    M  K      +        LE + +L    +   
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--- 210

Query: 86  DIPKITELREKFKNIKQILKSHVFSDFSSLGTGKETEETNLL--QQLSDACLVVDALEPS 143
             P  T   +   NIK  + S             + E   LL  +   +  LV+     +
Sbjct: 211 --PNWTSRSDHSSNIKLRIHS------------IQAELRRLLKSKPYENCLLVLL----N 252

Query: 144 VRE-ELVNNF---CRRELTS-------------YEQIFEGAELAKLDKTE-----RRYAW 181
           V+  +  N F   C+  LT+                I        L   E      +Y  
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 182 IK-----RRIRTNE--------EIFKIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTE- 227
            +     R + T          E  +    +W      ++  C K    +E  L+ L   
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NWKHVN-CDKLTTIIESSLNVLEPA 369

Query: 228 ------------RPDV----GTLLLALQRTIEFEDE----------LAEKFGGDSRSSEI 261
                        P        L L     I+ +            L EK   +S  S  
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 262 GLDIEEIGRPENNRQNVSDIRKKYERKLAANQGN-STEEKDG 302
            + +E   + EN       I   Y      +  +      D 
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 45/328 (13%), Positives = 98/328 (29%), Gaps = 108/328 (32%)

Query: 13  QSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLE 72
             + ++    R  +  DF     TT I+  H    L    E   ++      +      E
Sbjct: 265 SCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPRE 321

Query: 73  AVN---QLCS-----------HFEAYR--DIPKITELREKF-KNIKQILKSHVFSDFSSL 115
            +    +  S            ++ ++  +  K+T + E     ++      +F   S  
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 116 ---------------GTGKETEETNLLQQLSDACLV---------------VDAL----- 140
                              +++   ++ +L    LV               ++       
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 141 EPSVREELVN------NFCRRELT-----SYEQIFE--GAELAKLDKTERR--------- 178
           E ++   +V+       F   +L       Y   +   G  L  ++  ER          
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 179 YAWIKRRIRTNEEIFKIFPPSWHVP-YLLN-IQFCKKTRKQ-----------LEGILDNL 225
           + +++++IR +         +W+    +LN +Q  K  +             +  ILD L
Sbjct: 500 FRFLEQKIRHDS-------TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 226 TERPDVGTLLLA------LQRTIEFEDE 247
              P +   L+       L+  +  EDE
Sbjct: 553 ---PKIEENLICSKYTDLLRIALMAEDE 577

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
2d2s_A	235	Exocyst complex component EXO84; tethering complex	94.2

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2

Probab=94.20  E-value=3.2  Score=37.72  Aligned_cols=187  Identities=12%  Similarity=0.098  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccC---CCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 019917           43 HRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY---RDIPKITELREKFKNIKQILKSHVFSDFSSLGTGK  119 (334)
Q Consensus        43 krL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y---ksIp~I~~L~~~~~~i~~~L~~qI~~DF~~~~~~~  119 (334)
                      +++.=+.+..|.|...+..|+|.+++.+++....++...++=   .+.+.+..+..+++.-+..|.+++..+...  .. 
T Consensus        13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~-   89 (235)
T 2d2s_A           13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SN-   89 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CS-
T ss_pred             hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC-
Confidence            345556677799999999999999999999999999766531   235556778888888888888888877754  11 


Q ss_pred             CchhhhhhHhHhhhhhHHHhcCh--hHHHHHHHHHHHHhHHHHHHh-cCCcccccccchhhhHHHHHHhhhhhhhhcCcC
Q 019917          120 ETEETNLLQQLSDACLVVDALEP--SVREELVNNFCRRELTSYEQI-FEGAELAKLDKTERRYAWIKRRIRTNEEIFKIF  196 (334)
Q Consensus       120 ~~~~~~~~~~L~~aC~vvD~L~~--~~k~~lI~wf~~~~L~eY~~i-F~~~Ea~~Ldni~RRy~Wfkr~L~~~e~~~~iF  196 (334)
                      .      ...++.+...+--||.  .+++-+++..-+..=+.-+++ |.++...-+-++.  +.+|.-+-+..++.-.+|
T Consensus        90 ~------~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls--~i~Fs~I~~t~~~f~~~F  161 (235)
T 2d2s_A           90 E------IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLA--VIRFQTIKKTVEDFQDIF  161 (235)
T ss_dssp             S------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHH--HHHHHHHHHHHHHHHHHS
T ss_pred             C------HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            1      2456677777777775  455556665555544444554 3333334444555  455555555555544688


Q ss_pred             CCcccccHHHHHHHHHHHHHHH---HHHHHhccCCCCHHHHHHHHHHHHHH
Q 019917          197 PPSWHVPYLLNIQFCKKTRKQL---EGILDNLTERPDVGTLLLALQRTIEF  244 (334)
Q Consensus       197 P~~W~v~~~L~~~Fc~~Tr~dL---~~lL~~~~~~~dv~~Ll~aLq~Tl~F  244 (334)
                      |++   +-..+..|+..-+.++   ..++.+.--. +..+.-++++.+...
T Consensus       162 ~~~---~~~~~S~lV~Wa~~eve~f~~l~~rqv~~-~~~l~~ecv~i~~~~  208 (235)
T 2d2s_A          162 KEL---GAKISSILVDWCSDEVDNHFKLIDKQLLN-DEMLSPGSIKSSRKQ  208 (235)
T ss_dssp             TTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHH
T ss_pred             CCC---CcccccHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHH
Confidence            875   2234444444444444   3444322111 333333666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d2d2sa1	229	Exocyst complex component EXO84 {Baker's yeast (Sa	95.54

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.61  Score=39.88  Aligned_cols=72  Identities=13%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccC---CCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019917           42 LHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAY---RDIPKITELREKFKNIKQILKSHVFSDFS  113 (334)
Q Consensus        42 LkrL~MLv~av~qL~~~~~~r~Y~e~a~lL~av~~L~~~F~~Y---ksIp~I~~L~~~~~~i~~~L~~qI~~DF~  113 (334)
                      -+||.=+.+..|.|...+..|+|.|+..++....+++.....+   .++.-+..+..++++.+..|..++..+..
T Consensus         6 ~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~   80 (229)
T d2d2sa1           6 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL   80 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888889999999999999999999999999998777654   33445566778888888888888776554