Citrus Sinensis ID: 019985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDNGGGNGGGGSSPQNPTPQAQTPPS
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
ccccccHHHHHHHHcccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccccccccccccccc
mndlfsgsfsrfrseqaspdrphhhttiqmtenpnstggvnldkfFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDrsnaanrslpgcgpgsssdrtrTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYtvtgenpdektLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTvkpwdngggnggggsspqnptpqaqtpps
MNDLFSGSFSrfrseqaspdrphhhttiqmtenpnstggvNLDKFFDDVESVKDELKELERLhnslqtsheksktlhnakavKDLRSRMDADVSAALKNAKLIKIRLEaldrsnaanrslpgcgpgsssdrtrtsVVNGLRKKLKDSMESFNELRqrisseyrdtvqrryytvtgenpdektldRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRansyvrggterlqTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDNGGGnggggsspqnptpqaqtpps
MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAitilliiilfvvlftvKPWDngggnggggsspqnptpqaqtpps
***************************************************************************************************AKLIKIRL***********************************************************QRRYYTV*********************FLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDI*******NSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWD************************
MNDLFSG*************************************FFDDVESVKDELKELERLHNSLQ************************DVSAALKNAKLIKI*****************************SVVNGLRKKLKDSMESFNE************************************************************EIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKP**************************
*************************TTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSL**********HNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSL****************VNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDNGGG********************
*********SRFRSE************************VNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANR******PGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDN***********************
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MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVxxxxxxxxxxxxxxxxxxxxxISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDNGGGNGGGGSSPQNPTPQAQTPPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
Q9ZSD4346 Syntaxin-121 OS=Arabidops yes no 0.930 0.893 0.765 1e-122
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.918 0.894 0.666 1e-107
O64791303 Syntaxin-124 OS=Arabidops no no 0.870 0.953 0.605 1e-102
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.825 0.919 0.604 1e-98
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.846 0.921 0.557 2e-89
Q9SRV7306 Putative syntaxin-131 OS= no no 0.912 0.990 0.480 9e-73
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.906 0.990 0.495 1e-64
Q42374310 Syntaxin-related protein no no 0.834 0.893 0.413 9e-61
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.771 0.839 0.378 2e-48
P32856288 Syntaxin-2 OS=Homo sapien yes no 0.753 0.868 0.265 2e-20
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function desciption
 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/311 (76%), Positives = 271/311 (87%), Gaps = 2/311 (0%)

Query: 1   MNDLFSGSFSRFRSEQASPDR--PHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKE 58
           MNDLFS SFSRFRS + SP R        +QM     STGGVNLDKFF+DVESVK+ELKE
Sbjct: 1   MNDLFSSSFSRFRSGEPSPRRDVAGGGDGVQMANPAGSTGGVNLDKFFEDVESVKEELKE 60

Query: 59  LERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANR 118
           L+RL+ +L + HE+SKTLHNAKAVKDLRS+MD DV  ALK AK+IK++LEALDR+NAANR
Sbjct: 61  LDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANR 120

Query: 119 SLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENP 178
           SLPGCGPGSSSDRTRTSV+NGLRKKL DSM+SFN LR+ ISSEYR+TVQRRY+TVTGENP
Sbjct: 121 SLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENP 180

Query: 179 DEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLD 238
           DE+TLDRLISTGESE FLQKAIQEQGRGR+LDTINEIQERHDAVK +EKNL+ELHQVFLD
Sbjct: 181 DERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLD 240

Query: 239 MAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILF 298
           MAVLV+ QG QLDDIES V RA+S++RGGT++LQTAR YQ +TRKWTCIAI IL+III  
Sbjct: 241 MAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTCIAIIILIIIITV 300

Query: 299 VVLFTVKPWDN 309
           VVL  +KPW+N
Sbjct: 301 VVLAVLKPWNN 311
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function description
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|P32856|STX2_HUMAN Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
255566161316 syntaxin, putative [Ricinus communis] gi 0.915 0.962 0.854 1e-142
224088106306 predicted protein [Populus trichocarpa] 0.912 0.990 0.801 1e-133
356537204332 PREDICTED: syntaxin-121-like [Glycine ma 0.921 0.921 0.788 1e-130
225463272324 PREDICTED: syntaxin-121-like [Vitis vini 0.900 0.922 0.754 1e-128
297833970342 SYP121 [Arabidopsis lyrata subsp. lyrata 0.996 0.967 0.742 1e-127
356500585335 PREDICTED: syntaxin-121-like [Glycine ma 0.984 0.976 0.765 1e-124
4206787300 syntaxin-related protein Nt-syr1 [Nicoti 0.843 0.933 0.756 1e-124
357440101306 Syntaxin-121 [Medicago truncatula] gi|21 0.855 0.928 0.752 1e-123
388517193306 unknown [Medicago truncatula] 0.855 0.928 0.749 1e-122
312283505342 unnamed protein product [Thellungiella h 0.969 0.941 0.740 1e-121
>gi|255566161|ref|XP_002524068.1| syntaxin, putative [Ricinus communis] gi|223536636|gb|EEF38278.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/309 (85%), Positives = 288/309 (93%), Gaps = 5/309 (1%)

Query: 1   MNDLFSGSFSRFRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELE 60
           MNDLFSGSFSRFR+EQ SPD    H  IQMTE P STGGVNLDKFF+DVESVKDELKELE
Sbjct: 1   MNDLFSGSFSRFRNEQGSPD----HHVIQMTETP-STGGVNLDKFFEDVESVKDELKELE 55

Query: 61  RLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSL 120
           RL+ SLQ++HE+SKTLHNAK VKDLRSRMDADV+ ALK AKLIK+RLEALDRSNAANRSL
Sbjct: 56  RLNESLQSAHEQSKTLHNAKTVKDLRSRMDADVAQALKKAKLIKVRLEALDRSNAANRSL 115

Query: 121 PGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDE 180
           PGCGPGSSSDRTRTSVVNGLRKKLKDSMESF+ LR++IS+EYR+TVQRRYYTVTGENPDE
Sbjct: 116 PGCGPGSSSDRTRTSVVNGLRKKLKDSMESFSSLREKISTEYRETVQRRYYTVTGENPDE 175

Query: 181 KTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMA 240
           KTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVK +EKNL+ELHQVFLDMA
Sbjct: 176 KTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEMEKNLKELHQVFLDMA 235

Query: 241 VLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVV 300
           VLVQAQGEQLDDIES +QRA+S+VRGGT++LQTAR  Q +TRKWTC AI ILL+IILFVV
Sbjct: 236 VLVQAQGEQLDDIESNMQRASSFVRGGTQQLQTARTLQKNTRKWTCYAIIILLVIILFVV 295

Query: 301 LFTVKPWDN 309
           LFTV+PW+N
Sbjct: 296 LFTVRPWEN 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088106|ref|XP_002308326.1| predicted protein [Populus trichocarpa] gi|222854302|gb|EEE91849.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356537204|ref|XP_003537119.1| PREDICTED: syntaxin-121-like [Glycine max] Back     alignment and taxonomy information
>gi|225463272|ref|XP_002263986.1| PREDICTED: syntaxin-121-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297833970|ref|XP_002884867.1| SYP121 [Arabidopsis lyrata subsp. lyrata] gi|297330707|gb|EFH61126.1| SYP121 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356500585|ref|XP_003519112.1| PREDICTED: syntaxin-121-like [Glycine max] Back     alignment and taxonomy information
>gi|4206787|gb|AAD11808.1| syntaxin-related protein Nt-syr1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|357440101|ref|XP_003590328.1| Syntaxin-121 [Medicago truncatula] gi|217072078|gb|ACJ84399.1| unknown [Medicago truncatula] gi|355479376|gb|AES60579.1| Syntaxin-121 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388517193|gb|AFK46658.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|312283505|dbj|BAJ34618.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.927 0.890 0.735 7.9e-117
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.918 0.894 0.637 9.7e-96
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.840 0.920 0.611 6.5e-90
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.825 0.919 0.607 1.2e-88
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.846 0.921 0.557 2.8e-82
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.897 0.973 0.459 1.9e-67
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.852 0.912 0.419 7.5e-57
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.831 0.904 0.368 1.1e-46
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.801 0.796 0.278 1.1e-23
UNIPROTKB|P32856288 STX2 "Syntaxin-2" [Homo sapien 0.713 0.822 0.270 2.3e-23
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 228/310 (73%), Positives = 259/310 (83%)

Query:     1 MNDLFSGSFSRFRSEQASPDRP--HHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKE 58
             MNDLFS SFSRFRS + SP R        +QM     STGGVNLDKFF+DVESVK+ELKE
Sbjct:     1 MNDLFSSSFSRFRSGEPSPRRDVAGGGDGVQMANPAGSTGGVNLDKFFEDVESVKEELKE 60

Query:    59 LERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANR 118
             L+RL+ +L + HE+SKTLHNAKAVKDLRS+MD DV  ALK AK+IK++LEALDR+NAANR
Sbjct:    61 LDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANR 120

Query:   119 SLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENP 178
             SLPGCGPGSSSDRTRTSV+NGLRKKL DSM+SFN LR+ ISSEYR+TVQRRY+TVTGENP
Sbjct:   121 SLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENP 180

Query:   179 DEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLD 238
             DE+TLDRLISTGESE FLQKAIQEQGRGR+LDTINEIQERHDAVK +EKNL+ELHQVFLD
Sbjct:   181 DERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLD 240

Query:   239 MAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAXXXXXXXXXX 298
             MAVLV+ QG QLDDIES V RA+S++RGGT++LQTAR YQ +TRKWTCIA          
Sbjct:   241 MAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTCIAIIILIIIITV 300

Query:   299 XXXXXXKPWD 308
                   KPW+
Sbjct:   301 VVLAVLKPWN 310
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0005484 "SNAP receptor activity" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA;TAS
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0031201 "SNARE complex" evidence=ISS
GO:0009620 "response to fungus" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IGI;RCA
GO:0006952 "defense response" evidence=TAS
GO:0043495 "protein anchor" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=RCA;IMP
GO:0009863 "salicylic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=IGI;RCA
GO:0043069 "negative regulation of programmed cell death" evidence=IGI;RCA
GO:0051245 "negative regulation of cellular defense response" evidence=IGI
GO:0006612 "protein targeting to membrane" evidence=RCA;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0009504 "cell plate" evidence=IDA
GO:0010119 "regulation of stomatal movement" evidence=IMP
GO:0010148 "transpiration" evidence=IMP
GO:0072660 "maintenance of protein location in plasma membrane" evidence=IMP
GO:0072661 "protein targeting to plasma membrane" evidence=IMP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007154 "cell communication" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009625 "response to insect" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
GO:0051707 "response to other organism" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P32856 STX2 "Syntaxin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZSD4SY121_ARATHNo assigned EC number0.76520.93070.8930yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_VI000460
hypothetical protein (306 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 7e-40
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 8e-23
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 1e-18
pfam0573962 pfam05739, SNARE, SNARE domain 3e-17
pfam00804103 pfam00804, Syntaxin, Syntaxin 3e-15
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-13
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 2e-13
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 2e-12
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  137 bits (346), Expect = 7e-40
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 7/158 (4%)

Query: 42  LDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAK 101
           L++FF++VE ++  + ++      LQ  H +  T  +A    +L+  +++ V    K AK
Sbjct: 1   LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDA--DPELKQELESLVQEIKKLAK 58

Query: 102 LIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSE 161
            IK +L+ L+ SN  N +L G    SS DR R +  +GL KK  + M  FN+ +++    
Sbjct: 59  EIKGKLKELEESNEQNEALNG----SSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRER 114

Query: 162 YRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKA 199
           Y++ +QR+     GE  DE+  D L S G SE F  + 
Sbjct: 115 YKERIQRQLEITGGEATDEELEDMLES-GNSEIFTSQI 151

Length = 151
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.97
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.89
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.86
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.79
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.57
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.46
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.39
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.27
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.18
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.16
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.48
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.4
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.64
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.26
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.26
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.93
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.82
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.81
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.78
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 95.74
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 95.18
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 93.16
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 93.01
KOG2678244 consensus Predicted membrane protein [Function unk 91.41
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 90.65
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 90.42
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 90.26
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 89.45
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 88.49
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 86.01
COG1580159 FliL Flagellar basal body-associated protein [Cell 83.17
PF12273130 RCR: Chitin synthesis regulation, resistance to Co 82.99
KOG3850 455 consensus Predicted membrane protein [Function unk 81.6
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 80.97
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 80.76
PTZ00264148 circumsporozoite-related antigen; Provisional 80.17
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 80.12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-54  Score=402.50  Aligned_cols=291  Identities=41%  Similarity=0.657  Sum_probs=256.5

Q ss_pred             CCccccchhhhhhcccCCCCCCCCCCccccc----cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019985            1 MNDLFSGSFSRFRSEQASPDRPHHHTTIQMT----ENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTL   76 (332)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~   76 (332)
                      |||+++.+|.++.+           +|+|+.    ..+++.++..|+.||.+|++|+..|+.|...+.+|..+|.+.  +
T Consensus         1 M~d~~~~~~~~~~~-----------~~~e~~~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~--l   67 (297)
T KOG0810|consen    1 MNDRLSELLARSVS-----------EDNELDDVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKS--L   67 (297)
T ss_pred             CccccHHHHcCchh-----------hcccccccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--h
Confidence            89999999998872           233333    222344558899999999999999999999999999999655  4


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985           77 HNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQ  156 (332)
Q Consensus        77 ~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~  156 (332)
                      +++...+.++++|+.++.++.+.++.|+.+|+.+++++...+..+.|   ++..|+|++++..++++|.++|.+|+.+|.
T Consensus        68 ~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~---~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~  144 (297)
T KOG0810|consen   68 HSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS---SAGLRTRRTQTSALSKKLKELMNEFNRTQS  144 (297)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778999999999999999999999999999998875433333   345789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCchhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019985          157 RISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVF  236 (332)
Q Consensus       157 ~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf  236 (332)
                      .|+.+|+++++|||..+.+..+++++++.|+++|+++.|++.++.  +++++++++.++++||.+|++||++|.|||+||
T Consensus       145 ~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlF  222 (297)
T KOG0810|consen  145 KYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLF  222 (297)
T ss_pred             HHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998777665548999999999999999999999887  455678999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 019985          237 LDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCIAITILLIIILFVVLFTVKPWDN  309 (332)
Q Consensus       237 ~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qk~~rk~~c~~i~~~iiii~~i~~~~~~~~~~  309 (332)
                      .|||.||+.||+|||+||+||.+|.+||++|..++++|.+||+++|||+||+|++++|+++|+++++++||-.
T Consensus       223 lDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~  295 (297)
T KOG0810|consen  223 LDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVL  295 (297)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999888888888888888753

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls Back     alignment and domain information
>KOG3850 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PTZ00264 circumsporozoite-related antigen; Provisional Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 2e-14
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 5e-14
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 2e-10
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 3e-10
1jth_B77 Crystal Structure And Biophysical Properties Of A C 4e-10
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 5e-10
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 9e-10
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 3e-09
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 2e-08
3rk2_B65 Truncated Snare Complex Length = 65 2e-08
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 3e-08
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 8e-06
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 127/249 (51%), Gaps = 26/249 (10%)
Query: 45  FFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAV---KDLRSRMDADVS------A 95
           FF+ V+ ++D ++++E+       + E+   LH    V   K+ R R++  +       +
Sbjct: 46  FFNRVKRIRDNIEDIEQ-------AIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARIS 98
Query: 96  ALKNAKLIKIRLEALDRSN--AANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNE 153
           AL N   I+  L+ +++ N  A        G  S+  R R S  + L +K    M  +N+
Sbjct: 99  ALGNK--IRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYND 156
Query: 154 LRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTIN 213
           ++      Y + V R+   V     D+  + ++I  G    F    ++ +G    L   N
Sbjct: 157 VQAENKRRYGENVARQCRVVEPSLSDD-AIQKVIEHGTEGIF--SGMRLEGAEAKL---N 210
Query: 214 EIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQT 273
           EI++RH  ++ LE++L ELH++F DM+ LV +QGE +D IE  V+++++YV+  TE++  
Sbjct: 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQ 270
Query: 274 ARKYQLSTR 282
           AR YQ S R
Sbjct: 271 ARHYQESAR 279
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 4e-53
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 8e-50
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 2e-46
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 1e-31
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 6e-29
1s94_A180 S-syntaxin; three helix bundle, structural plastic 4e-27
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 2e-24
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 3e-24
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-23
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 2e-23
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 4e-21
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  174 bits (443), Expect = 4e-53
 Identities = 63/276 (22%), Positives = 123/276 (44%), Gaps = 16/276 (5%)

Query: 12  FRSEQASPDRPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHE 71
            R+ + S D      T+              D+FF+ VE ++  + ++      ++  H 
Sbjct: 8   LRTAKDSDDDDDVTVTVDRDRFM--------DEFFEQVEEIRGFIDKIAENVEEVKRKH- 58

Query: 72  KSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDR 131
            S  L +    +  +  ++  +S   K A  ++ +L+++++S        G    S+  R
Sbjct: 59  -SAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI---EQEEGLNRSSADLR 114

Query: 132 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGE 191
            R +  + L +K  + M  +N  +       +  +QR    +TG     + L+ ++ +G 
Sbjct: 115 IRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR-QLEITGRTTTSEELEDMLESGN 173

Query: 192 SETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLD 251
              F    I +    +    ++EI+ RH  +  LE +++ELH +F+DMA+LV++QGE +D
Sbjct: 174 PAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMID 231

Query: 252 DIESQVQRANSYVRGGTERLQTARKYQLSTRKWTCI 287
            IE  V+ A  YV       + A KYQ   R+   +
Sbjct: 232 RIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.97
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.94
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.9
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.89
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.86
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.85
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.84
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.83
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.78
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.76
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.75
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 98.79
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.41
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.25
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.24
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.22
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.05
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 96.87
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 96.77
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 96.71
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.67
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 94.91
3b5n_C70 Protein transport protein SEC9; snare complex, syn 93.48
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 93.12
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 92.95
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 89.4
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 83.5
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 82.24
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 81.59
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=4.8e-43  Score=326.69  Aligned_cols=243  Identities=24%  Similarity=0.421  Sum_probs=195.0

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 019985           37 TGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAA  116 (332)
Q Consensus        37 ~~~~~~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~  116 (332)
                      .++.+|+.||..|++|+.+|..|+.++.+|+.+|.+.++.++.  .+.++.+|+.++.+++++++.|+.+|+.|+..+..
T Consensus        25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~  102 (267)
T 1dn1_B           25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ  102 (267)
T ss_dssp             --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3578999999999999999999999999999999988776553  23678999999999999999999999999887543


Q ss_pred             hcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCchhHH
Q 019985          117 NRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFL  196 (332)
Q Consensus       117 ~r~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~~~~  196 (332)
                      .   +++.+.+++.|+|++|+..|+++|+++|.+|+.+|..|++.+|.++.|+ +.|.||++++++++.++++|+++.|.
T Consensus       103 ~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq-~~i~~~~~tdeeie~~ie~g~~~~f~  178 (267)
T 1dn1_B          103 E---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFA  178 (267)
T ss_dssp             H---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCCCHHHHHHHHHTCSSCTTT
T ss_pred             c---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhccCCCCCHHHHHHHHhCCcHHHHH
Confidence            1   1123345677999999999999999999999999999999999999865 56679999999999999998877666


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019985          197 QKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTARK  276 (332)
Q Consensus       197 q~~l~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qge~id~Ie~nv~~a~~~v~~g~~~L~kA~~  276 (332)
                      +..+.+  ..++..++.++++||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||+.|+.+|.+|.+
T Consensus       179 q~~l~~--~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~  256 (267)
T 1dn1_B          179 SGIIMD--SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK  256 (267)
T ss_dssp             TTCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred             HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543332  234567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhchhhHHHH
Q 019985          277 YQLSTRKWTCI  287 (332)
Q Consensus       277 ~qk~~rk~~c~  287 (332)
                      |++++|||+||
T Consensus       257 ~q~~~rkk~~~  267 (267)
T 1dn1_B          257 YQSKARRKKIM  267 (267)
T ss_dssp             -----------
T ss_pred             HHHHhcCcccC
Confidence            99999999886
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 1e-32
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 4e-23
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (296), Expect = 1e-32
 Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 13/206 (6%)

Query: 41  NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNA 100
           +   F + +  +  +L + +   N + + H++  T  N +    LR  +D  V+ A    
Sbjct: 3   DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQ 62

Query: 101 KLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISS 160
             +K  +++  R                 D  + +     R++    ++ +  +      
Sbjct: 63  FKLKNEIKSAQRD-------------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKE 109

Query: 161 EYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHD 220
           E ++  +R+Y  +  E  +++    +   G  + F Q  +    RG     + E+Q RH 
Sbjct: 110 ENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQ 169

Query: 221 AVKVLEKNLQELHQVFLDMAVLVQAQ 246
            +  LEK++ EL Q+F DM  LV  Q
Sbjct: 170 ELLKLEKSMAELTQLFNDMEELVIEQ 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.92
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.77
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 86.84
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.4e-24  Score=183.87  Aligned_cols=192  Identities=21%  Similarity=0.353  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCC
Q 019985           42 LDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLP  121 (332)
Q Consensus        42 ~~~F~~~v~~I~~~I~~I~~~i~~L~~l~~~~~~~~~~~d~~~l~~kl~~l~~~i~~~~~~Ik~~Lk~l~~~~~~~r~~~  121 (332)
                      +..||+.|++|+..|..|+..+..|..++.+.+..+++.+...++.+++.+..++..+.+.++..++.+....       
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~-------   76 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG-------   76 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------
Confidence            7889999999999999999999999999999888888888889999999999999999999999888876531       


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChhHHHHHhhcCCch-hHHHHHH
Q 019985          122 GCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESE-TFLQKAI  200 (332)
Q Consensus       122 ~~~~~s~~~rir~~q~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~krr~~~i~~~~~seeeie~~i~~g~~~-~~~q~~l  200 (332)
                            +..+++++++..|+.+|..++..|+.+|..|.+.+|.++.|++. +.+|++++++++..+..++.. .+.+..+
T Consensus        77 ------~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (196)
T d1fioa_          77 ------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM-IIQPEATEDEVEAAISDVGGQQIFSQALL  149 (196)
T ss_dssp             ------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCCHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCccchhhhHhhccccchHHHHHHHH
Confidence                  24688999999999999999999999999999999999887654 557889999998887654333 3333333


Q ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 019985          201 QEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQG  247 (332)
Q Consensus       201 ~~~~~~q~~~~l~~i~~R~~ei~~Ie~~i~eL~~lf~dla~lV~~Qg  247 (332)
                      ......++...+.++++|+++|.+||++|.||++||.|||.||++|.
T Consensus       150 ~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         150 NANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            33333355678899999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure