Citrus Sinensis ID: 020001

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MAVNHLCQWQYLRFQLSHPSAPACRYLSPSRSKSSTSSTAKVNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEcccccccEEEEEcccccccccccccccHHHHHHccccccccHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHccccHHHHHHHHHHccccccccccccHHHccccccEEEEEEEcccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccHEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHEccccccEEEEEEEccccccccccEEEEEcccccccccccEEEEEEEEEcccccccccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHccccHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccEEEccccccHHHccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAVNHLCQWQYLRfqlshpsapacrylspsrsksstsstakvncsaapssspmdshnegrkkfmefpyasgpvRQLMVDLVSTVENtldsqllpctlppdvqyyenqngtaQASLQIRSGLKSSLIDFILgswvhselptgaalNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLIldlsprkdlvlhpdylqtfyestRLDEYRQMLEkvpevrpyfssslylrcvispsaimvrvdtetetgagestrlDYIITNHVHPVAKQVIGIWLnqcacggrhvgesdKAYLEKRDGLIKNKTIeidlgssfprlfgpqvASRVLGEIQKVFTA
Flexible Loop (DISEMBL)
MAVNHLCQWQYLRFQLSHPSAPACRYLSPsrsksstsstakvncsaapssspmdshNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIeidlgssfprlfgpqvaSRVLGEIQKVFTA
Low Complexity Region (SEG)
MAVNHLCQWQYLRFQLSHPSAPACRYLspsrsksstssTAKVNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered region (IsUnstruct)
*****************************************************************FPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQ*****
Disordered Region (DISOPRED)
***NHLCQWQYLRFQLSHPSAP*******************************************FPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYEN*****QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTET********RLDYIITNHVHPVAKQVIGIWLNQCAC**************KRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered Region (DISEMBL)
MAVNHLCQWQYLRFQLSHPSAPA**********************************EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Disordered Region (DISPRO)
*AVNHLCQWQYLRFQLSHPSAP**************************************KKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVNHLCQWQYLRFQLSHPSAPACRYLSPSRSKSSTSSTAKVNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q8LDU4	319	Red chlorophyll catabolit	yes	no	0.819	0.852	0.546	8e-81
Q9MTQ6	205	Red chlorophyll catabolit	N/A	no	0.602	0.975	0.434	9e-50

>sp|Q8LDU4|RCCR_ARATH Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2

 Score =  300 bits (769), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 205/282 (72%), Gaps = 10/282 (3%)

Query: 53  MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTA 111
           M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A
Sbjct: 41  MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSA 100

Query: 112 QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSP 171
           +ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS 
Sbjct: 101 EASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSS 160

Query: 172 SSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231
            SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP
Sbjct: 161 KSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSP 220

Query: 232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKA 288
           +A M+++D E      E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++ 
Sbjct: 221 TASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERM 274

Query: 289 YLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
            LE+RD   + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 275 ELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with pheophorbide a oxygenase (PaO) by reducing the C20/C1 double bond of the intermediate, RCC.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 8EC: 0

>sp|Q9MTQ6|RCCR_HORVU Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=2 SV=1

 Score =  197 bits (501), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 142/205 (69%), Gaps = 5/205 (2%)

Query: 126 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 185
           IDF+L S +H ++P GA ++ITSL   LN+STDAP+ ++E IQ SP+S+V++LDL PRKD
Sbjct: 1   IDFMLQSSLHCKVPNGA-IDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKD 59

Query: 186 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 245
           L LHP+Y++ +YE T +D+ R+++E++P+ RPY S SL++R   SP+A+   +D     G
Sbjct: 60  LALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTID----CG 115

Query: 246 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 305
            G    L+ I+  H+  V K ++ IWL+ CA     + E ++  + KRD  +++K+IE+D
Sbjct: 116 KGGEGTLEEIVHGHLASVVKGILQIWLDTCASDASEMEEGEREIMVKRDRTVRSKSIEVD 175

Query: 306 LGSSFPRLFGPQVASRVLGEIQKVF 330
           L ++ PR+FGP V+ R++ EI+K F
Sbjct: 176 LTANLPRMFGPDVSGRIIAEIRKAF 200

Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with pheophorbide a oxygenase (PaO) by reducing the C20/C1 double bond of the intermediate, RCC.

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
225438706	322	PREDICTED: red chlorophyll catabolite re	0.846	0.872	0.670	1e-108
255565168	313	Red chlorophyll catabolite reductase, ch	0.831	0.881	0.660	1e-107
224094332	276	predicted protein [Populus trichocarpa]	0.828	0.996	0.663	1e-106
356552529	322	PREDICTED: red chlorophyll catabolite re	0.822	0.847	0.667	1e-105
255645027	322	unknown [Glycine max]	0.822	0.847	0.667	1e-105
359806208	329	uncharacterized protein LOC100780934 [Gl	0.831	0.838	0.657	1e-104
357495121	277	Red chlorophyll catabolite reductase [Me	0.831	0.996	0.629	1e-104
147839733	359	hypothetical protein VITISV_028662 [Viti	0.846	0.782	0.593	1e-103
162568920	314	putative red chlorophyll catabolite redu	0.855	0.904	0.618	1e-100
106880168	313	red chlorophyll catabolite reductase [So	0.843	0.894	0.619	2e-97

>gi|225438706|ref|XP_002277744.1| PREDICTED: red chlorophyll catabolite reductase, chloroplastic [Vitis vinifera] gi|296082425|emb|CBI21430.3| unnamed protein product [Vitis vinifera]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/288 (67%), Positives = 232/288 (80%), Gaps = 7/288 (2%)

Query: 46  AAPSSSPM---DSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQ 102
           AA SSSP      +  GR +FMEFP+ S P R LMV+LVS VE  LDS LLPCTLPPDVQ
Sbjct: 38  AASSSSPSLTDPQYGGGRSRFMEFPHVSAPHRDLMVELVSAVEARLDSYLLPCTLPPDVQ 97

Query: 103 YYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNL 162
           YYENQ+GTAQA+L +RSG  SS IDF+LGSW+H +LP+G ALNITSLS YLN STDAPN 
Sbjct: 98  YYENQSGTAQATLHVRSGHDSSPIDFVLGSWIHCQLPSGGALNITSLSTYLNPSTDAPNF 157

Query: 163 LIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSS 222
           LIELI+SSP+SLVLILDL PRKDL LHPDYLQTFYE T+L+  RQ+LEK+PE +PYFSSS
Sbjct: 158 LIELIRSSPTSLVLILDLPPRKDLALHPDYLQTFYEDTKLESRRQLLEKIPESQPYFSSS 217

Query: 223 LYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHV 282
           LY+RC++SP+AIM R++TE    AG   R++ I+ +HV PVA +V+GIWL+QCA G R V
Sbjct: 218 LYIRCIVSPTAIMTRIETE----AGGVERMEEILQSHVGPVAMEVLGIWLDQCAFGEREV 273

Query: 283 GESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
           G+S+ +YLEKRD LI++KTIEIDLGSS PRLFGP+ A RVL  ++ VF
Sbjct: 274 GDSEISYLEKRDRLIRSKTIEIDLGSSLPRLFGPETAGRVLEAMRGVF 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565168|ref|XP_002523576.1| Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis] gi|223537138|gb|EEF38771.1| Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/280 (66%), Positives = 231/280 (82%), Gaps = 4/280 (1%)

Query: 53  MDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQ 112
           M+ HN+GR +F+EFP+ S P R+LMVDL+S VEN L SQLLPCTLPPDVQY  NQ+G AQ
Sbjct: 38  MELHNQGRSRFLEFPFVSVPQRELMVDLLSAVENRLGSQLLPCTLPPDVQYCRNQSGNAQ 97

Query: 113 ASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPS 172
           A+  IRS  ++S +DFILGSW+H +LPTGAALNITSLSAYLN STDAPN LIELIQSSP+
Sbjct: 98  AAFHIRSANQNSPVDFILGSWLHCKLPTGAALNITSLSAYLNLSTDAPNFLIELIQSSPT 157

Query: 173 SLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPS 232
           SLVLI+DL PRKDLVL+PDYLQTFYE+++L+ +RQ L+K+ EV+PY +SSLYLR  +SP+
Sbjct: 158 SLVLIIDLPPRKDLVLYPDYLQTFYENSQLEAHRQTLQKLKEVQPYVTSSLYLRSFLSPT 217

Query: 233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEK 292
           AIM+ V+TE    AGES R++ II + V PVAK V G+WL++CACGGR V E +KAYL+K
Sbjct: 218 AIMILVETE----AGESGRMEEIIKDQVGPVAKAVFGVWLDKCACGGREVEEEEKAYLKK 273

Query: 293 RDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332
           RD L+K K IEIDL S+FPR+FGP++A R+LG IQK++  
Sbjct: 274 RDELVKKKIIEIDLASNFPRMFGPELADRILGAIQKIYNV 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094332|ref|XP_002310143.1| predicted protein [Populus trichocarpa] gi|118486991|gb|ABK95327.1| unknown [Populus trichocarpa] gi|222853046|gb|EEE90593.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/279 (66%), Positives = 229/279 (82%), Gaps = 4/279 (1%)

Query: 53  MDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQ 112
           MD HN+GR+KF+EFP+ S P R LMV+L+STVE+ L S LLPCTLP DVQ+ +N++G+AQ
Sbjct: 1   MDLHNQGRQKFIEFPFVSAPHRDLMVNLLSTVEDRLGSHLLPCTLPLDVQHCQNESGSAQ 60

Query: 113 ASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPS 172
           ASL IRSGL+SS +DFILGSW+H +LPTG ALNITSLSAYLN STDAPN +IELIQSSP+
Sbjct: 61  ASLHIRSGLQSSQVDFILGSWLHCKLPTGGALNITSLSAYLNPSTDAPNFMIELIQSSPT 120

Query: 173 SLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPS 232
           SLV ILDL PRKD VL PDYLQTFYE+T+LD +RQML K+PEV+PY SSSLYLR V+SP+
Sbjct: 121 SLVFILDLPPRKDPVLSPDYLQTFYENTQLDTHRQMLAKLPEVQPYVSSSLYLRSVLSPT 180

Query: 233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEK 292
            +M+++  +    AG   R++ I+ NH+ P A++V+GIWL+ CA G R VGE +KAY+ K
Sbjct: 181 VVMIQIGAQ----AGGPERMEEIVKNHIDPTAQEVLGIWLDHCARGERLVGEEEKAYMMK 236

Query: 293 RDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 331
           RD LIK KTIEIDLG++FPRLFGP+V  RVLG IQKV+ 
Sbjct: 237 RDELIKKKTIEIDLGTNFPRLFGPEVTDRVLGAIQKVYN 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552529|ref|XP_003544619.1| PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Glycine max]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/277 (66%), Positives = 228/277 (82%), Gaps = 4/277 (1%)

Query: 56  HNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASL 115
           +N+GR KFM+FP+ S   + LMVDLVST+EN   +QLLPCTLP DVQYY++Q  TAQASL
Sbjct: 50  NNQGRSKFMDFPFVSSAQKNLMVDLVSTLENRFHTQLLPCTLPSDVQYYQSQTATAQASL 109

Query: 116 QIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLV 175
            IR+    S IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+ L+
Sbjct: 110 HIRAAHNDSPIDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPTMLL 169

Query: 176 LILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
           LILDL PRKDLVL PD L+TFYE T+LD++RQ LE+VPEV+PYFSSSLY+R V SP+AIM
Sbjct: 170 LILDLPPRKDLVLWPDDLKTFYEDTQLDKHRQTLERVPEVQPYFSSSLYIRTVSSPTAIM 229

Query: 236 VRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDG 295
           VRV TE     G   R++ II +H+ P++KQV+GIWL+ CAC  R VGE+++AYL+KRDG
Sbjct: 230 VRVLTEN----GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKREVGEAERAYLKKRDG 285

Query: 296 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332
           LI+NKTIEIDLGSSFPRLFGP+VA+RVL  I++ FT 
Sbjct: 286 LIRNKTIEIDLGSSFPRLFGPEVANRVLEAIKEYFTV 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645027|gb|ACU23013.1| unknown [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/277 (66%), Positives = 227/277 (81%), Gaps = 4/277 (1%)

Query: 56  HNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASL 115
           +N+GR KFM+FP+ S   + LMVDLVST+EN   +QLLPCTLP DVQYY++Q  TAQASL
Sbjct: 50  NNQGRSKFMDFPFVSSAQKNLMVDLVSTLENRFHTQLLPCTLPSDVQYYQSQTATAQASL 109

Query: 116 QIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLV 175
            IR+    S IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+ L+
Sbjct: 110 HIRAAHNDSPIDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPTMLL 169

Query: 176 LILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
           LILDL PRKDLVL PD L+TFYE T+LD++RQ LE+VPEV+PYFSSSLY+R V SP+AIM
Sbjct: 170 LILDLPPRKDLVLWPDDLKTFYEDTQLDKHRQTLERVPEVQPYFSSSLYIRTVSSPTAIM 229

Query: 236 VRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDG 295
           VRV TE     G   R++ II +H+ P++KQV+GIWL+ CAC  R VGE+++AYL+KRDG
Sbjct: 230 VRVLTEN----GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKREVGEAERAYLKKRDG 285

Query: 296 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332
           LI NKTIEIDLGSSFPRLFGP+VA+RVL  I++ FT 
Sbjct: 286 LITNKTIEIDLGSSFPRLFGPEVANRVLEAIKEYFTV 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806208|ref|NP_001240950.1| uncharacterized protein LOC100780934 [Glycine max] gi|255639043|gb|ACU19822.1| unknown [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/280 (65%), Positives = 226/280 (80%), Gaps = 4/280 (1%)

Query: 53  MDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQ 112
           M++    R KFM+FP+ S   + LMVDLVST+EN   SQLLPCTLP DVQYY++Q  TAQ
Sbjct: 54  MENQETQRSKFMDFPFVSSAQKNLMVDLVSTLENRFHSQLLPCTLPSDVQYYQSQTATAQ 113

Query: 113 ASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPS 172
           ASL IR     S IDF+LGSWVHSELPTG +L+ITSLSAYLNSSTDAPN + E+I+SSP+
Sbjct: 114 ASLHIRPAHNDSQIDFVLGSWVHSELPTGGSLDITSLSAYLNSSTDAPNFVFEMIRSSPT 173

Query: 173 SLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPS 232
            LVLILDL PRKDLVL PD L+TFYE T+LD++RQ L++VPEV+PYFSSSLY+R V SP+
Sbjct: 174 MLVLILDLPPRKDLVLWPDDLKTFYEDTQLDKHRQALDRVPEVQPYFSSSLYIRTVSSPT 233

Query: 233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEK 292
           AIMVR+ TE     G   R++ II +H+ P++KQV+GIWL+ CAC  R VGE+++AYL+K
Sbjct: 234 AIMVRILTEN----GGVERMEEIIRDHLDPISKQVLGIWLDHCACAKRQVGEAERAYLKK 289

Query: 293 RDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332
           RDGLI+NKTIEIDLGSSFPRLFGP+VA+RVL  I++ FT 
Sbjct: 290 RDGLIRNKTIEIDLGSSFPRLFGPEVANRVLDAIKEYFTV 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495121|ref|XP_003617849.1| Red chlorophyll catabolite reductase [Medicago truncatula] gi|355519184|gb|AET00808.1| Red chlorophyll catabolite reductase [Medicago truncatula]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/281 (62%), Positives = 225/281 (80%), Gaps = 5/281 (1%)

Query: 53  MDSHN-EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTA 111
           MD+   +GR KF+EFP+ S P + LM+DLVSTVE+  +S LLPC+LPPDVQYY+++NGT+
Sbjct: 1   MDTQKKQGRSKFLEFPFVSAPHKNLMLDLVSTVEDRFESHLLPCSLPPDVQYYKSKNGTS 60

Query: 112 QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSP 171
           Q SL IR     S IDF++GSWVH+ELPTG +L+ITSLSAYLNSS DAPN + ELI+SSP
Sbjct: 61  QVSLHIRPSNTDSPIDFVMGSWVHAELPTGGSLDITSLSAYLNSSNDAPNFVFELIRSSP 120

Query: 172 SSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231
           + L+L+LDL PRKDLVL PDYL+TFYE T+LD ++Q LEK+PEV+PY +SSL++R V SP
Sbjct: 121 TMLILVLDLPPRKDLVLWPDYLKTFYEDTKLDTHKQALEKIPEVQPYITSSLFIRSVASP 180

Query: 232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLE 291
           +AI VR+ TE + G     R+D II NH+ PV+KQV+GIWL+ CAC  R VGE DKAYL 
Sbjct: 181 TAIFVRIQTENDEGE----RIDEIIKNHIDPVSKQVLGIWLDHCACAEREVGEEDKAYLI 236

Query: 292 KRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332
           KRDG+I+NKTIE+DLGSSFPRLFGP+ A ++L  I++ FT 
Sbjct: 237 KRDGVIRNKTIEVDLGSSFPRLFGPEAAKQILEAIKEYFTV 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839733|emb|CAN61781.1| hypothetical protein VITISV_028662 [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/325 (59%), Positives = 233/325 (71%), Gaps = 44/325 (13%)

Query: 46  AAPSSSPM---DSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQ 102
           AA SSSP      +  GR +FMEFP+ S P R LMV+LVS VE  LDS LLPCTLPPDVQ
Sbjct: 38  AASSSSPSLTDPQYGGGRSRFMEFPHVSAPHRDLMVELVSAVEARLDSYLLPCTLPPDVQ 97

Query: 103 YYENQNGTAQASLQIRSGLKSS-------------------------------------L 125
           YYENQ+GTAQA+L +RSG  SS                                      
Sbjct: 98  YYENQSGTAQATLHVRSGXDSSPVSIYSTTAIFIHLIVNIFAQDEQLGMELSEPGSTLNK 157

Query: 126 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 185
           IDF+LGSW+H +LP+G ALNITSLS YLN STDAPN LIELI+SSP+SLVLILDL PRKD
Sbjct: 158 IDFVLGSWIHCQLPSGGALNITSLSTYLNPSTDAPNFLIELIRSSPTSLVLILDLPPRKD 217

Query: 186 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 245
           L LHPDYLQTFYE T+L+  RQ+LEK+PE +PYFSSSLY+RC++SP+AJM R++TE    
Sbjct: 218 LALHPDYLQTFYEDTKLESRRQLLEKIPESQPYFSSSLYIRCIVSPTAJMTRIETE---- 273

Query: 246 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID 305
           AG   R++ I+ +HV PVAK+V+GIWL+QCA G R VG+S+ +YLEKRD LI++KTIEID
Sbjct: 274 AGGVERMEEILQSHVGPVAKEVLGIWLDQCAFGEREVGDSEISYLEKRDRLIRSKTIEID 333

Query: 306 LGSSFPRLFGPQVASRVLGEIQKVF 330
           LGSS PRLFGP+ A RVL  ++ VF
Sbjct: 334 LGSSLPRLFGPETAGRVLEAMRGVF 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162568920|gb|ABY19386.1| putative red chlorophyll catabolite reductase [Nicotiana tabacum]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/291 (61%), Positives = 225/291 (77%), Gaps = 7/291 (2%)

Query: 42  VNCSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDV 101
           ++CS   SS  M+  NE + K  EFPY S P R+LMV+L+STVEN L + LLPCTLP +V
Sbjct: 31  LSCS---SSKYMEQQNENKSKLKEFPYVSVPHRELMVELISTVENRLGTALLPCTLPTNV 87

Query: 102 QYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPN 161
           QY+EN   TA ASL +RSG  SS +DFILGSWVH  LPTG ALNITSLSAYL  STDAPN
Sbjct: 88  QYFENSTATAHASLYVRSGHSSSQVDFILGSWVHCNLPTGGALNITSLSAYLRPSTDAPN 147

Query: 162 LLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSS 221
            LIE+I+SSP+SL+LILDL PRKDLV HPDYL+TFYE T+LDE RQ+LEK+PEV+PYFSS
Sbjct: 148 FLIEVIRSSPTSLILILDLPPRKDLVQHPDYLKTFYEETQLDEQRQLLEKLPEVKPYFSS 207

Query: 222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH 281
           SLY+R V+SPSAI+V ++TE    A ++ R+D II +H+ PVAK ++  WL+ CAC  R 
Sbjct: 208 SLYIRAVVSPSAILVSIETE----ASQAVRIDEIIQDHISPVAKVMLETWLDLCACAERK 263

Query: 282 VGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332
           + E +   L KRD +IKNKTIEIDL SSFPRLFG +VA++VL  +++++ A
Sbjct: 264 LTEDESTALAKRDKIIKNKTIEIDLESSFPRLFGQEVANKVLVVLREIYNA 314

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|106880168|emb|CAJ80766.1| red chlorophyll catabolite reductase [Solanum lycopersicum]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/289 (61%), Positives = 223/289 (77%), Gaps = 9/289 (3%)

Query: 44  CSAAPSSSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQY 103
           CS+  SS+ M+ H     KF EFPYAS P R+LMV+LVSTVEN L   LLPCTLP  VQY
Sbjct: 34  CSS--SSTSMEHH---ESKFKEFPYASVPHRELMVELVSTVENRLGESLLPCTLPSHVQY 88

Query: 104 YENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLL 163
           +EN++ TA ASL +RSG  SS +DFILGSWVH  LPTG ALNITSLS YL  STDAPN L
Sbjct: 89  FENESATAHASLYVRSGNSSSQVDFILGSWVHCNLPTGGALNITSLSVYLRPSTDAPNFL 148

Query: 164 IELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSL 223
           IE+IQSSP++L+LILDL PRKDLV HPDYL+TFYE T+LD+ RQ+LEK+PEV+PYFSSSL
Sbjct: 149 IEVIQSSPTTLILILDLPPRKDLVQHPDYLKTFYEETQLDKQRQLLEKLPEVKPYFSSSL 208

Query: 224 YLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVG 283
           Y+R ++SPSAI+V +    ET   ++ R+D II +H+ PVAK ++  WLN CAC  R + 
Sbjct: 209 YIRALVSPSAILVSI----ETDPSQAIRIDEIIQDHISPVAKVMLDTWLNLCACTERRLT 264

Query: 284 ESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 332
           + +   L KRD +IKNKTIEIDL SSFPRLFG QVA++VLG +++++ +
Sbjct: 265 DDESKDLAKRDQIIKNKTIEIDLESSFPRLFGQQVANQVLGVLREIYNS 313

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2115105	319	ACD2 "ACCELERATED CELL DEATH 2	0.819	0.852	0.546	5.5e-77

TAIR|locus:2115105 ACD2 "ACCELERATED CELL DEATH 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 154/282 (54%), Positives = 205/282 (72%)

Query:    53 MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTA 111
             M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A
Sbjct:    41 MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSA 100

Query:   112 QASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSP 171
             +ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS 
Sbjct:   101 EASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSS 160

Query:   172 SSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231
              SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP
Sbjct:   161 KSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSP 220

Query:   232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKA 288
             +A M+++D E      E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++ 
Sbjct:   221 TASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERM 274

Query:   289 YLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
              LE+RD   + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct:   275 ELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       321   0.00085  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  218 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.27u 0.09s 27.36t   Elapsed:  00:00:01
  Total cpu time:  27.27u 0.09s 27.36t   Elapsed:  00:00:01
  Start:  Mon May 20 22:29:42 2013   End:  Mon May 20 22:29:43 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA;IMP;TAS

GO:0051743 "red chlorophyll catabolite reductase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LDU4	RCCR_ARATH	1, ., 3, ., 1, ., 8, 0	0.5460	0.8192	0.8526	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VII000889	SubName- Full=Putative uncharacterized protein; (277 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.163.75.1	pheophorbide a oxygenase (456 aa)					•	•	•		0.911

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
PLN02581	267	PLN02581, PLN02581, red chlorophyll catabolite red	1e-149
pfam06405	255	pfam06405, RCC_reductase, Red chlorophyll cataboli	1e-135

>gnl|CDD|215318 PLN02581, PLN02581, red chlorophyll catabolite reductase

 Score =  419 bits (1078), Expect = e-149
 Identities = 164/269 (60%), Positives = 212/269 (78%), Gaps = 4/269 (1%)

Query: 62  KFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGL 121
           +F+EFP  S   R+LMVDL S VE  L S LLP +LPPDV+ ++NQ+G AQ SL IRSG 
Sbjct: 1   RFIEFPKVSPAHRELMVDLASAVEARLGSLLLPSSLPPDVRSFQNQSGNAQGSLHIRSGA 60

Query: 122 KSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLS 181
           + S IDF+LGSW+H +LPTG ALNITSLSA+LN STDAP+ L+ELIQSSP+SLVLILDL 
Sbjct: 61  QGSKIDFVLGSWLHCKLPTGGALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLP 120

Query: 182 PRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTE 241
           PRKDLVLHPDYL+T+YE T+LD +RQ LEK+P+V+PY S SLY+R V+SP+AI+V++D E
Sbjct: 121 PRKDLVLHPDYLKTYYEDTQLDAHRQKLEKLPQVQPYVSPSLYVRSVVSPTAILVKIDCE 180

Query: 242 TETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKT 301
                G   RL+ I+ + V PVAK+V+ IWL+ CAC GR + E ++AYLEKRD +I++K+
Sbjct: 181 ----EGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGREMEEEERAYLEKRDRMIRSKS 236

Query: 302 IEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
           +E+DL S+ PRLFG +VA RV+  I+K F
Sbjct: 237 VEVDLSSNMPRLFGQEVADRVVAAIRKAF 265

Length = 267

>gnl|CDD|203437 pfam06405, RCC_reductase, Red chlorophyll catabolite reductase (RCC reductase)

 Score =  384 bits (988), Expect = e-135
 Identities = 159/257 (61%), Positives = 198/257 (77%), Gaps = 4/257 (1%)

Query: 74  RQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSW 133
           R+LMV L S VE  L ++LLP T+PPDVQY+ENQ+GTA  SL +RSG  SS IDF+LGSW
Sbjct: 3   RELMVALASEVEARLGARLLPSTVPPDVQYFENQSGTAVGSLDVRSGAPSSPIDFMLGSW 62

Query: 134 VHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYL 193
           +H +LPTG ALNITSLS YLN STDAP+ L E IQSSP+SLVLILDL PRKDLVLHPDYL
Sbjct: 63  LHCKLPTGGALNITSLSVYLNPSTDAPHFLFEFIQSSPTSLVLILDLLPRKDLVLHPDYL 122

Query: 194 QTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLD 253
           + +YE T+LD+ RQ+LEK+PEVRPYFSSSLY+R V+SP+AI+V +  E     G   RL+
Sbjct: 123 KRYYEETQLDKQRQLLEKLPEVRPYFSSSLYVRSVVSPTAILVSIQCE----EGGEERLE 178

Query: 254 YIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRL 313
            I+  H+ P AK+V+ IWL  CA G R V ES++  LEKRD +++ K+IE+DL S+ PRL
Sbjct: 179 EIVRGHLAPTAKEVLDIWLELCAGGEREVEESEREALEKRDLIVRRKSIEVDLDSNLPRL 238

Query: 314 FGPQVASRVLGEIQKVF 330
           FG +VA RV+ EI+  F
Sbjct: 239 FGQEVADRVVAEIRGAF 255

This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins. Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyze the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC). Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
PLN02581	267	red chlorophyll catabolite reductase	100.0
PF06405	255	RCC_reductase: Red chlorophyll catabolite reductas	100.0
PRK13248	253	phycoerythrobilin:ferredoxin oxidoreductase; Provi	99.27
PRK13250	248	phycoerythrobilin:ferredoxin oxidoreductase; Provi	99.21
PRK13247	238	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	99.17
PRK02816	243	phycocyanobilin:ferredoxin oxidoreductase; Validat	99.13
PRK13249	257	phycoerythrobilin:ferredoxin oxidoreductase; Provi	99.11
PF05996	228	Fe_bilin_red: Ferredoxin-dependent bilin reductase	99.02
PRK13246	236	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	98.76

>PLN02581 red chlorophyll catabolite reductase

Probab=100.00  E-value=5.2e-124  Score=870.66  Aligned_cols=267  Identities=61%  Similarity=1.029  Sum_probs=264.6

Q ss_pred             ceeeccCCCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCCCC
Q 020001           62 KFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTG  141 (332)
Q Consensus        62 ~~~efP~~s~~~r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~G  141 (332)
                      |||||||+|+|||+||++|++++|+|||++|+||++|+||++|+|++|+|+|||++|||++||+|||||||||||+||+|
T Consensus         1 ~~~efp~~s~a~r~lm~~l~~~ve~Rlg~~l~Ps~~P~dv~~f~n~~G~a~GSl~irsG~~~S~IDf~l~SWlh~~lp~g   80 (267)
T PLN02581          1 RFIEFPKVSPAHRELMVDLASAVEARLGSLLLPSSLPPDVRSFQNQSGNAQGSLHIRSGAQGSKIDFVLGSWLHCKLPTG   80 (267)
T ss_pred             CcccccCCCcchHHHHHHHHHHHHHHhccccCCccCchHHHHhcCCCCCceeEEEEecCCCCCceeEEeehhhcCCCCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcccccCc
Q 020001          142 AALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSS  221 (332)
Q Consensus       142 galnItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~PY~S~  221 (332)
                      ||+|||||++||||+||||||+|||||+|||+|||||||+||||||+||||||||||+|++|++||+|+|+||+|||+|+
T Consensus        81 galnItsL~~~L~~stdaPhf~~Eliq~sptslv~~LDl~PRkDLvl~pdYl~~yYe~t~ld~~Rq~l~k~pe~~pY~S~  160 (267)
T PLN02581         81 GALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLPPRKDLVLHPDYLKTYYEDTQLDAHRQKLEKLPQVQPYVSP  160 (267)
T ss_pred             ccccHHHHHhHhccCCCCCceeeeeeccCCceEEEEeccCCccccccCHHHHHHHhcccccHHHHHHHHhCcccCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcc
Q 020001          222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKT  301 (332)
Q Consensus       222 SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~  301 (332)
                      |||||+++|||||||+|+|    ++|++++|||||+++|+|+||+||++||+.|+|++++|+|+||++|+|||++||+|+
T Consensus       161 SLyvRs~~SPTAi~~~i~~----~~~~~~~leeiv~~~i~p~a~evl~~WL~~c~~~~~~~~e~Er~~l~kRD~~Ir~k~  236 (267)
T PLN02581        161 SLYVRSVVSPTAILVKIDC----EEGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGREMEEEERAYLEKRDRMIRSKS  236 (267)
T ss_pred             cceeeeccCCceEEEEeec----CCCccccHHHHHHhhhhHHHHHHHHHHHHHhccCCccCcHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999    677899999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCCcccccChhhHHHHHHHHHhhhcC
Q 020001          302 IEIDLGSSFPRLFGPQVASRVLGEIQKVFTA  332 (332)
Q Consensus       302 iE~Dl~~~~pRLFGqEvadRVv~air~~f~~  332 (332)
                      ||+||++|||||||||+|||||++|||+|++
T Consensus       237 iE~Dl~~nlprlFGqevadRvv~air~~~~~  267 (267)
T PLN02581        237 VEVDLSSNMPRLFGQEVADRVVAAIRKAFRV  267 (267)
T ss_pred             eeechhhhhhhHhChHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999985

>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins

Probab=100.00  E-value=1.5e-115  Score=811.11  Aligned_cols=255  Identities=59%  Similarity=0.995  Sum_probs=224.4

Q ss_pred             hhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCCCCccccceeeee
Q 020001           72 PVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSA  151 (332)
Q Consensus        72 ~~r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~GgalnItsL~v  151 (332)
                      |||++|.+|++++|+|||++|+||++|+||++|+|++|+|+|||++|||++||+|||||||||||++|+||++|||||++
T Consensus         1 ~~relm~~l~~~~e~rL~~~L~p~~~p~dv~~f~n~~g~a~GSl~vrsG~~~s~IDf~l~SWlh~~lP~~g~lnItsL~v   80 (255)
T PF06405_consen    1 AHRELMVDLASEVEARLGSRLLPSTVPPDVQYFSNQDGNAEGSLHVRSGAEGSPIDFMLGSWLHCKLPTGGALNITSLSV   80 (255)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGB----S-HHHHEEE-TTSSEEEEEEEEEB-TTSSEEEEEEEEEEEE-TTS-EEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHhcccCCCCCChhHHHhcCCCCCceeEEEEecCCCCCceeEEEeeeeeecCCCCceeeeheeee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcccccCcccceeeecCc
Q 020001          152 YLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP  231 (332)
Q Consensus       152 ~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~PY~S~SLyvRs~~SP  231 (332)
                      ||||+||||||+|||||+||++|||||||+||||||+|||||+||||+|+||+|||+|+++||+|||+|+|||||+++||
T Consensus        81 ~L~~stdaPhf~~Eliq~sp~~lv~~lDl~PRkDLvl~pdYl~~yYe~t~ld~~R~~le~~pe~~pY~S~SLyvRs~~SP  160 (255)
T PF06405_consen   81 FLNPSTDAPHFLFELIQSSPTSLVFYLDLPPRKDLVLHPDYLDRYYEDTQLDKHRQLLEKLPEFQPYVSSSLYVRSVVSP  160 (255)
T ss_dssp             EE-TT--S--EEEEEEESSSSEEEEEEE---SS-TTT-HHHHHHHTTTTTCHHHHHHHHHSTTEEE---S-HHHHHHS-T
T ss_pred             eecccCCCCcEEEEEeecCCCcEEEEEecCcccccccCHHHHHHHhcccchhHHHHHHHhCcccCcccCcchhheeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceecccCCCcc
Q 020001          232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFP  311 (332)
Q Consensus       232 TAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~Dl~~~~p  311 (332)
                      |||||+|+|    ++|++++|||||+++|+|+||+||++|||.|+|++++|+|+||++|+|||++||+|+||+||+||||
T Consensus       161 TAi~~~i~~----~~g~~~~leeIv~~~i~p~A~~vl~~WL~~c~~~~~~v~e~Er~~L~~RD~~ir~~~iE~Dl~~~~p  236 (255)
T PF06405_consen  161 TAILYSIDC----EEGGEERLEEIVRDHIAPVAKEVLDIWLDSCADEAREVEEEERAALAKRDRMIRRKSIEVDLSSNLP  236 (255)
T ss_dssp             T-EEEEEE-----SS--HHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSSTS-HHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             ceEEEEecc----cccchhhHHHHHHhhhhHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhceeeeccccchh
Confidence            999999999    6799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChhhHHHHHHHHHhhh
Q 020001          312 RLFGPQVASRVLGEIQKVF  330 (332)
Q Consensus       312 RLFGqEvadRVv~air~~f  330 (332)
                      ||||||+|||||++|||+|
T Consensus       237 rlFG~evadrvv~ai~~~f  255 (255)
T PF06405_consen  237 RLFGQEVADRVVAAIRGAF  255 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhChHHHHHHHHHHHhhC
Confidence            9999999999999999998

Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyse the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC) [].; PDB: 2ZXK_A 3AGA_B 3AGC_B 2ZXL_A 3AGB_A.

>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=99.27  E-value=1e-10  Score=110.37  Aligned_cols=213  Identities=18%  Similarity=0.330  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCC----------CCccc
Q 020001           75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAAL  144 (332)
Q Consensus        75 ~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp----------~Ggal  144 (332)
                      ..+..|.+.|+++ +  ..|-.+|.++.+=.+           .+|..+++..-++.||..-..|          .|..+
T Consensus        17 ~fl~~l~~~l~~~-~--~~p~~i~~~f~~~e~-----------~~~~~~~~~~~~~~sw~~~~~~~~R~~R~~~i~g~~L   82 (253)
T PRK13248         17 NFLKYLTNNLSKY-N--CLEKKIPSEYSYKDS-----------TYGSKKSKKNVNLSTWGVTHKKRIQFARAVCINSPNY   82 (253)
T ss_pred             HHHHHHHHHHHHc-C--CceecCcHhhhhhhh-----------cccccccCCceEEEeeecccChHHHHHhhheecCCCC
Confidence            3577888888665 4  445558888774311           1234456677888888872222          57899


Q ss_pred             cceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHH-HhhhCC-------Ccc
Q 020001          145 NITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ-MLEKVP-------EVR  216 (332)
Q Consensus       145 nItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~-~lek~P-------e~~  216 (332)
                      +|.+..+|.+|..|-|=|.++|+.+ |+.-+.||||=|=..+  ..+|.++||+...  .... .-+.+|       ++.
T Consensus        83 qVLn~V~fP~p~yDLPiFGaDlV~~-~~~~~aIlDlqPl~~~--~~~Y~~~~~~~L~--~l~~~~~~~lP~~g~~~~e~~  157 (253)
T PRK13248         83 SVLNFLIIPNTIYNVPFFGVDFVSL-PNSHLLVLDFQPSLKI--QNQYNNELLEKLI--KLKNHCHSSLPLAEKMSADVA  157 (253)
T ss_pred             eEEEEEecCCCCCCCCccceeeecc-CCCcEEEEECCccccC--hHHHHHHHHhhcc--chhhhhHhhCCCCCcCcchhH
Confidence            9999999999999999999999999 5455679999997733  2479999999887  3333 346788       555


Q ss_pred             cccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHH
Q 020001          217 PYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGL  296 (332)
Q Consensus       217 PY~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~  296 (332)
                      +|+          ||..++++...+    ++    =.++|++.+-+..++.|++|++.+.. +.++...+.+.+.++-.-
T Consensus       158 ~~F----------Sp~~Lf~R~~~~----~e----~~~~ie~~~~~af~~YL~~y~~l~~~-a~~~~~~~~~~i~~~Q~~  218 (253)
T PRK13248        158 RFF----------SPGVIWSKLPKE----ER----SDFLIENQLYTSFKEYLDLYLEILFE-SKEVNIGLQKELINGQNN  218 (253)
T ss_pred             hhC----------CCceEEEecCCc----cc----chhhHHHHHHHHHHHHHHHHHHHHHh-CCCCCcccHHHHHHHHHH
Confidence            554          566777777552    11    14567888999999999999999984 666655444444433322


Q ss_pred             hhhcceecccCCCc-ccccChhhHHHHHHH
Q 020001          297 IKNKTIEIDLGSSF-PRLFGPQVASRVLGE  325 (332)
Q Consensus       297 IR~k~iE~Dl~~~~-pRLFGqEvadRVv~a  325 (332)
                      -=+-..|.||+--+ -++||+|=|||.+..
T Consensus       219 Y~~yqaenDpar~vL~k~FG~eWae~yI~~  248 (253)
T PRK13248        219 YLNYRRDNDPARPMLSSLFGKEFTESLINE  248 (253)
T ss_pred             HHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence            22356899999976 999999999999865

>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=99.21  E-value=3.9e-10  Score=106.15  Aligned_cols=215  Identities=16%  Similarity=0.230  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCC----------CCcccc
Q 020001           76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAALN  145 (332)
Q Consensus        76 lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp----------~Ggaln  145 (332)
                      .+..+.+.+..++  .+.|..+|+++.+-..           +.|..-.+-+.++.+|++..-.          .|..+.
T Consensus         7 Fl~~~~~~~~~~~--~l~p~~l~~~l~~~~~-----------~~~~~~~~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lq   73 (248)
T PRK13250          7 FLDYAITLLTERL--ELQPYPIPAGFERKEA-----------MTGKGKKQEEVVTTSYAFQSPKLRQIRAAHVQGGSALQ   73 (248)
T ss_pred             HHHHHHHHHhhcC--CCCCCCCchhhhhhhh-----------hccccccCCceEEeehhhcCcHHHHHHHHHHhcCCCcE
Confidence            4556667775565  5667778899885532           2222223556778888764311          478999


Q ss_pred             ceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcc---cccCcc
Q 020001          146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVR---PYFSSS  222 (332)
Q Consensus       146 ItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~---PY~S~S  222 (332)
                      |.+..+|.+|..|.|=|.++|+.+ |+....++||=|=.+  .+.+|.++|++...  ...++..++|.+-   ||.+  
T Consensus        74 VLn~V~fP~p~yDLPiFGaDlv~~-~~~~laalDlqPl~~--~~~~Y~~~~~~~l~--~~~~~~r~l~~wg~~~~~e~--  146 (248)
T PRK13250         74 VLNFVIFPHLNYDLPFFGADLVTL-PGGHLIALDMQPLFR--DDPAYQAKYTEPIL--PLFNAHQAHLPWGGDFPEEA--  146 (248)
T ss_pred             EEEEEecCCcCCCCCccceeeeec-CCceEEEEECCcccC--cHHHHHHHHHHhhH--HHHhhhhhcCCccccCcchh--
Confidence            999999999999999999999999 666655699999754  12699999999776  7777777776532   3332  


Q ss_pred             cceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhh-HHHHHHhhHHhhhcc
Q 020001          223 LYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESD-KAYLEKRDGLIKNKT  301 (332)
Q Consensus       223 LyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~E-r~~L~~RD~~IR~k~  301 (332)
                         ...+||..++.+...            .+.|++.+-+..++.|++|++..+ .+.++++.+ .+.+.+.-.--=+-.
T Consensus       147 ---~~~FSp~~lf~Rp~~------------~~~~e~~lf~af~~YL~~y~~~~~-~a~~~~~~~~~~~i~~~Q~~Y~~yq  210 (248)
T PRK13250        147 ---KPFFSPAFLWTRPQE------------TEVVETRVFEAFKDYLQAYLDFVE-QAEAVTDSEQLAEILQAQLRYLRYR  210 (248)
T ss_pred             ---HhhcCCceEEEecCC------------hhHHHHHHHHHHHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHHHHH
Confidence               245677888888742            134556677799999999999999 567776555 333333222222356


Q ss_pred             eecccCCCc-ccccChhhHHHHHHHH
Q 020001          302 IEIDLGSSF-PRLFGPQVASRVLGEI  326 (332)
Q Consensus       302 iE~Dl~~~~-pRLFGqEvadRVv~ai  326 (332)
                      .|.||+--| -++||+|=|||.+..+
T Consensus       211 aenDpar~vL~k~FG~eWae~yi~~~  236 (248)
T PRK13250        211 AEKDPARGMFTRFYGEEWTEEYIHGF  236 (248)
T ss_pred             HHcCcHHHHHHHHhChHHHHHHHHhc
Confidence            899999966 9999999999998653

>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional

Probab=99.17  E-value=4.8e-10  Score=104.89  Aligned_cols=206  Identities=16%  Similarity=0.223  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhcccc---------CC-CCcccc
Q 020001           76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE---------LP-TGAALN  145 (332)
Q Consensus        76 lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~---------lp-~Ggaln  145 (332)
                      ++..|++.|+++   .+.|..+|+++++-.+              .   ....++.+|+...         .- .|..++
T Consensus         5 ~l~~l~~~I~~~---~l~~~~ip~~l~~~~~--------------~---~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lq   64 (238)
T PRK13247          5 FLEELHKEIFSR---GGQSLPVPAGLEECVS--------------E---KGNAVIRSWLWQVPGFRRWRVTRLDAGDSLQ   64 (238)
T ss_pred             HHHHHHHHHHHc---CCcccCCChhHhhhhc--------------c---cCceEEEeeeecCchHHHHHHHHhhcCCCcE
Confidence            577889999888   7888889999995532              1   2256777776533         11 478999


Q ss_pred             ceeeeeecCCCCCCCceeeeeeeecCCeEEE-EEecCCccCCCCChhHHHHhhcCCChhHHHH---HhhhCCCcccccCc
Q 020001          146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---MLEKVPEVRPYFSS  221 (332)
Q Consensus       146 ItsL~v~L~pstDaPHF~~ElIq~sPtslvl-~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~lek~Pe~~PY~S~  221 (332)
                      |.+..+|.+|..|.|=|.++|+.++-..... |+||=|=.   -+.+|.++||+...  ...+   .+.+.-+..+|-  
T Consensus        65 VLn~V~fP~~~yDLPifG~Dlv~~~~~~~laAIlDlqPl~---~~~~~~~~y~~~L~--~l~~~~~~~~~~~~~~~~d--  137 (238)
T PRK13247         65 VLNSVAYPDYNYDLPLMGIDLLWFGKKQKLVAVLDFQPLV---QDKDYLDRYFEGLK--SLKERFPDLNSEETMRFYD--  137 (238)
T ss_pred             EEEEEecCCCCCCCCccceeEeecCCCceEEEEEecCCCC---cchhhhHHHHHHHH--HHHHhhHhhcCCCCCCCcc--
Confidence            9999999999999999999999993234344 69999954   56799999998754  5543   333333333332  


Q ss_pred             ccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccc-hhhHHHHHHhhHHhhhc
Q 020001          222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVG-ESDKAYLEKRDGLIKNK  300 (332)
Q Consensus       222 SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~-e~Er~~L~~RD~~IR~k  300 (332)
                         ....+||..++.+-..             +.+++.+-+..++.|++|++..+ .+.+++ ..+.+.+.+.-.--=+-
T Consensus       138 ---~~~~FSp~~lf~R~~~-------------~~~~~~l~~af~~YL~~~~~~~~-~a~~~~~~~~~~~i~~~Q~~Y~~y  200 (238)
T PRK13247        138 ---PNQYFSPWLLFCKGGA-------------ETATNSLPKAFSAFLKAYWQLHD-NAKKITSTIEIQEVVQLQIDYDIY  200 (238)
T ss_pred             ---ccccCCCceEEeeCCc-------------HHHHHHHHHHHHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHHHH
Confidence               2346677777777432             12457788999999999999999 566765 44444333322222234


Q ss_pred             ceecccCCCc-ccccChhhHHHHHHH
Q 020001          301 TIEIDLGSSF-PRLFGPQVASRVLGE  325 (332)
Q Consensus       301 ~iE~Dl~~~~-pRLFGqEvadRVv~a  325 (332)
                      ..|.||+--+ -++||+|=|||.+..
T Consensus       201 qaenDpar~~L~~~FG~~Wae~yi~~  226 (238)
T PRK13247        201 SAERDPAHGLFSSYFGKEWSERFLHE  226 (238)
T ss_pred             HHHcCcHHHHHHHHcChHHHHHHHHh
Confidence            5899999966 999999999999865

>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated

Probab=99.13  E-value=1.9e-09  Score=101.18  Aligned_cols=211  Identities=18%  Similarity=0.273  Sum_probs=145.7

Q ss_pred             hhHHHHHHHHHHHHhhhcc--ccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhc---------cccCC-
Q 020001           72 PVRQLMVDLVSTVENTLDS--QLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWV---------HSELP-  139 (332)
Q Consensus        72 ~~r~lm~~L~s~ve~RL~~--~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWl---------h~~lp-  139 (332)
                      ...-++..|++.|+++.+.  .+.|..+|+|+.+=....+               +-...+.+|.         |+..- 
T Consensus        11 ~~~pli~~la~~i~~~~~~~~~l~p~~l~~~l~~~~~~~~---------------~~~l~I~n~~~q~~~fRk~hle~~~   75 (243)
T PRK02816         11 QLHPLILQLAERIRSHWQQLLDLSPYALPPDLGYIEGKLE---------------GEKLFIENECYQAPGFRKLHLELAR   75 (243)
T ss_pred             hhhHHHHHHHHHHHHHHhhcCCCCcCCCChhhcccccccC---------------CCeeEEEEeeecccchhhhheeeec
Confidence            4567889999999999885  6788889999886532111               1234444554         34421 


Q ss_pred             CCccccceeeeeecCCCCCCCceeeeeeeecCCeE-EEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCcccc
Q 020001          140 TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPY  218 (332)
Q Consensus       140 ~GgalnItsL~v~L~pstDaPHF~~ElIq~sPtsl-vl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~PY  218 (332)
                      .|..+.|.+..+|.++..|.|=|.++|+.+ |+.. +.|+||=|=.. -+.+.|.+++ ++... ...++..++|++-- 
T Consensus        76 ~G~~lqVLn~V~fP~~~yDlPiFGaDlv~~-~~~~slaIlDlqPl~~-~~~~~Y~~~l-~~l~~-~~f~~~r~lp~wg~-  150 (243)
T PRK02816         76 LGNGLDILHCVMFPDPRYDLPIFGADLVAG-RGGISAAIVDLSPVSR-TLPDAYIKAL-SALPK-PAFSQPRELPEWGD-  150 (243)
T ss_pred             cCCCceEEEEEecCCCCCCCCccceeEeec-CCceeEEEEecCcccc-cchHHHHHHH-Hhhcc-hhhhccccCCCccC-
Confidence            478999999999999999999999999997 6566 66899999662 2334888888 65531 44455666666655 


Q ss_pred             cCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccc-hhhHHHHHHhhHHh
Q 020001          219 FSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVG-ESDKAYLEKRDGLI  297 (332)
Q Consensus       219 ~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~-e~Er~~L~~RD~~I  297 (332)
                               .+||..++++-..         +..    +..+-+..++.|++|++.... +.++. .++.+...+.-.--
T Consensus       151 ---------~FSp~~lf~R~~~---------~~e----~~~~~~~f~~yL~~~~~~~~~-a~p~~~~~~~~~~~~~Q~~Y  207 (243)
T PRK02816        151 ---------IFSPYCLFIRPTN---------AEE----ENQFLDRVDEYLSIHCQLAIA-AQPDSDSEQIIERLAGQKNY  207 (243)
T ss_pred             ---------ccCcceEEecCCC---------HHH----HHHHHHHHHHHHHHHHHHHHh-CCCCCCchhHHHHHHHHHHH
Confidence                     5677777777432         111    146678999999999999994 55555 22222222222212


Q ss_pred             hhcceecccCCCc-ccccChhhHHHHHHH
Q 020001          298 KNKTIEIDLGSSF-PRLFGPQVASRVLGE  325 (332)
Q Consensus       298 R~k~iE~Dl~~~~-pRLFGqEvadRVv~a  325 (332)
                      =+...|.||+--+ -|+||+|-|||.+..
T Consensus       208 ~~~q~enDptr~vL~~~FG~~Wae~yi~~  236 (243)
T PRK02816        208 CLQQKRNDKTRRVLEKAFGPEWADRYITT  236 (243)
T ss_pred             HHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence            2245899999966 999999999998865

>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional

Probab=99.11  E-value=1.2e-09  Score=103.42  Aligned_cols=219  Identities=18%  Similarity=0.268  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehh---------ccccCC-CCcccc
Q 020001           76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSW---------VHSELP-TGAALN  145 (332)
Q Consensus        76 lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SW---------lh~~lp-~Ggaln  145 (332)
                      .+..+.+.|+ ++  .+.|-.+|+++.+=...-++-.+           +..-...+|         +|+..- .|..+.
T Consensus        22 fl~~~~~~l~-~~--~l~p~~ip~~l~~~e~~~~~~~~-----------~~~i~~~~~~~~~~~fRk~r~~~~~~G~~lq   87 (257)
T PRK13249         22 FLDDAIKALS-PF--QPEPYPVAEDFLQRESQTGSKSK-----------PVKVTTATWACKTEKIRQVRAACVEAGEAAS   87 (257)
T ss_pred             HHHHHHHHHh-hC--CCcccCCChhhhhhhcccccccC-----------cceEEEeeeccCChHHHHHHHHHhhcCCCcE
Confidence            4667777775 33  66777788998865332222111           122223333         344422 478999


Q ss_pred             ceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHH-hhhCCCcccccCcccc
Q 020001          146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQM-LEKVPEVRPYFSSSLY  224 (332)
Q Consensus       146 ItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~-lek~Pe~~PY~S~SLy  224 (332)
                      |.+..+|.+|..|.|=|.++|+.. |+...+.+||=|=.+-  .|+|+++|++...  ...++ -+++|+.-.-.+   -
T Consensus        88 VLn~V~fP~p~yDLPiFGaDlv~~-~~~~~lalDlqPl~~~--~~~~~~~y~~~L~--~~~~~~~~~lP~~g~i~~---e  159 (257)
T PRK13249         88 VLNFVINPSNRFDLPFFGADLVTL-PNGHLLALDLQPALKT--DEIHTQHVWERLM--PIFEHWQSKLPSGGPIPE---E  159 (257)
T ss_pred             EEEEEecCCcCCCCCccceeeeec-CCceEEEEecCccccc--cHHHHHHHHHHHH--HHHHhhHHhCCCcCCccc---h
Confidence            999999999999999999999999 7777677999996532  5899999998885  55444 445666543211   3


Q ss_pred             eeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceec
Q 020001          225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEI  304 (332)
Q Consensus       225 vRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~  304 (332)
                      -+..+||..++++...    ++++    ...|...|.++-++.|++|++.++ .+.++..++...+.+.-.--=+-..|.
T Consensus       160 ~~~fFSp~~lf~Rp~~----~~e~----~~~~~~~l~~AF~~YL~~~~~l~~-~a~~~~~~~~~~i~~~Q~~Y~~yqaen  230 (257)
T PRK13249        160 AQPYFSPGFLWTRLPL----GEEG----DNLISEVIRPAFDEYLNLYLDLVE-EAKPVSKERAFKLLEGQKRYTSYRAEK  230 (257)
T ss_pred             hhhcCCCceEEEecCC----ccch----hHHHHHHHHHHHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHHHHHHHHHHc
Confidence            3456788888888865    2221    134567788999999999999999 466775555555444333333356899


Q ss_pred             ccCCCc-ccccChhhHHHHHHH
Q 020001          305 DLGSSF-PRLFGPQVASRVLGE  325 (332)
Q Consensus       305 Dl~~~~-pRLFGqEvadRVv~a  325 (332)
                      ||+.-| -++||+|=|||.+..
T Consensus       231 Dpar~vL~k~FG~eWae~yi~~  252 (257)
T PRK13249        231 DPARGMLTRFHGSEWTESYIHN  252 (257)
T ss_pred             CcHHHHHHHHhCHHHHHHHHHh
Confidence            999966 999999999999865

>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1

Probab=99.02  E-value=1e-09  Score=101.26  Aligned_cols=212  Identities=19%  Similarity=0.232  Sum_probs=133.8

Q ss_pred             HHHHhhhcc--ccCCCCCCcccccccccCCCeeEE--EEEeeCCCCCcceeeeehhccccCC-CCccccceeeeeecCCC
Q 020001           82 STVENTLDS--QLLPCTLPPDVQYYENQNGTAQAS--LQIRSGLKSSLIDFILGSWVHSELP-TGAALNITSLSAYLNSS  156 (332)
Q Consensus        82 s~ve~RL~~--~llPst~P~Dv~~y~n~~G~a~gS--L~vrSG~~~S~IDf~l~SWlh~~lp-~GgalnItsL~v~L~ps  156 (332)
                      ..|+++++.  .|.|..+|+++.+-.+..|+....  =..+.++   +++=     +|+..- .|..++|.|..+|.+++
T Consensus         2 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~i~n~~~q~~---~fRk-----~r~~~~~~g~~lqVL~~V~yP~~~   73 (228)
T PF05996_consen    2 ETIEARWSSLPDLEPYPLPEELSYIESELGGERLVIENWCYQSP---KFRK-----LRLERADAGEGLQVLNCVIYPRPE   73 (228)
T ss_dssp             HHHHHHHHHCTT-EEEEECCCCSEEEEETTCEEEEEEEEEEEET---TEEE-----EEEEEEEETTTEEEEEEEEEE-TT
T ss_pred             hhHHHHHHHccCCeeecCChHhhhcccccchhhHHHHhhhhccc---HHHH-----HHHHHhhcCCCcEEEEEEEcCCCC
Confidence            355666655  467888889999988877754333  3344555   4442     233322 37789999999999999


Q ss_pred             CCCCceeeeeeeecCCeEEE-EEecCCccCCCCChhHHHHhhcCCChhHHHH---HhhhCCCcccccCcccceeeecCcc
Q 020001          157 TDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---MLEKVPEVRPYFSSSLYLRCVISPS  232 (332)
Q Consensus       157 tDaPHF~~ElIq~sPtslvl-~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~lek~Pe~~PY~S~SLyvRs~~SPT  232 (332)
                      .|.|=|.++++..+...+++ |+||-|=   ..+.+|..+|++...  ...+   .+-..++-.|+-+.     ..+||.
T Consensus        74 ydLPiFG~Dlv~~~~~~~~~ailDl~P~---~~~~~l~~~y~~~L~--~l~~~~~~~~~~~~~lp~w~~-----~iFSp~  143 (228)
T PF05996_consen   74 YDLPIFGADLVAFPGKRISAAILDLQPL---SQDRDLPEKYYSKLA--PLPEKYQELFPEPRKLPEWGN-----QIFSPW  143 (228)
T ss_dssp             S---EEEEEEEEETTETEEEEEEEEE-S---STTSHHCHHHHHHHH--TSHHH-TT--SSBTSSSGGCG-----SCS-TT
T ss_pred             CCCCcccceeeeeCCccEEEEEEeCCCC---CCcccchHHHHHHHH--HHHHHHHhhccccccCchhHH-----HhCCCc
Confidence            99999999999995532555 7999885   667779999998655  3332   22223334444332     356777


Q ss_pred             eEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCccc-chhhHHHHHHhhHHhhhcceecccCCCc-
Q 020001          233 AIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHV-GESDKAYLEKRDGLIKNKTIEIDLGSSF-  310 (332)
Q Consensus       233 Ai~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v-~e~Er~~L~~RD~~IR~k~iE~Dl~~~~-  310 (332)
                      .++++-..           .  .+.+.+-+..+++|+.|++.... +.++ +.++......+-.---+...|.||+-.+ 
T Consensus       144 ~lf~r~~~-----------~--~~~~~~~~af~~yl~~~~~~~~~-a~~~~~~~~~~~~~~~Q~~Y~~~q~~nDptr~vL  209 (228)
T PF05996_consen  144 CLFIRPSN-----------P--EEEEQFLSAFKEYLQAYLELVEQ-AEPVTDPERIAERLEAQHRYCQYQAENDPTRRVL  209 (228)
T ss_dssp             -EEEEEES-----------H--HHHHHHHHHHHHHHHHHHHHHHH-HTCSB-HHHHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred             eEEeeCCC-----------H--HHHHHHHHHHHHHHHHHHHHHHh-CCCcCCHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            77777321           1  12367889999999999999884 4455 3333333333323333355789999866 


Q ss_pred             ccccChhhHHHHHHH
Q 020001          311 PRLFGPQVASRVLGE  325 (332)
Q Consensus       311 pRLFGqEvadRVv~a  325 (332)
                      -+.||+|-|||.+..
T Consensus       210 ~~~FG~~wae~yi~~  224 (228)
T PF05996_consen  210 EKAFGEEWAERYINE  224 (228)
T ss_dssp             HHHH-HHHHHHHHHH
T ss_pred             HHHhChHHHHHHHHH
Confidence            999999999998865

3.7.5 from EC (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase 1.3.7.2 from EC (PebA) and phycoerythrobilin:ferredoxin oxidoreductase 1.3.7.3 from EC (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from haem via the intermediacy of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [].; GO: 0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor, 0050897 cobalt ion binding, 0010024 phytochromobilin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3I8U_X 3AJH_A 3NB9_A 3I94_A 2DKE_A 3NB8_A 3F0M_A 3AJG_A 3I95_A 2D1E_A ....

>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional

Probab=98.76  E-value=1.1e-07  Score=89.28  Aligned_cols=203  Identities=17%  Similarity=0.275  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCC----------CCccc
Q 020001           75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAAL  144 (332)
Q Consensus        75 ~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp----------~Ggal  144 (332)
                      ..+.+|.+.|+.+   ...|-.+|.++....+                 .+-.-++.+|+...-.          .|..+
T Consensus         4 ~fl~~l~~~l~~~---~~~~~~i~~~f~~~~~-----------------~~~~~~I~n~~~q~~~fRk~r~~~~~~G~~l   63 (236)
T PRK13246          4 SLVDFLKTNIDEL---NGHELQISKEFKEHHN-----------------KDSKYIIKNWLFSSPEYRKWRITRLDGGKKL   63 (236)
T ss_pred             HHHHHHHHHHHHc---CCccccCchhHHHHhc-----------------CCCceEEEeehhcCchHHHHHHHHhhcCCCc
Confidence            3567788888666   5556667788774422                 1345566777653311          47899


Q ss_pred             cceeeeeecCCCCCCCceeeeeeeecCCe-EEEEEecCCccCCCCChhHHHHhhcCCChhHHHH---Hh-----hhCCCc
Q 020001          145 NITSLSAYLNSSTDAPNLLIELIQSSPSS-LVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---ML-----EKVPEV  215 (332)
Q Consensus       145 nItsL~v~L~pstDaPHF~~ElIq~sPts-lvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~l-----ek~Pe~  215 (332)
                      +|.+..+|.+|..|.|=|.++|+..++.. ++-||||=|=   ..+.+|.++||+...  ....   .+     .+.|++
T Consensus        64 qVLn~V~fP~p~yDLPifG~Dlv~f~~~~~~aaIlDlqPl---~~d~~y~~~y~~~L~--~L~~~~~~~~~~~~r~~~e~  138 (236)
T PRK13246         64 QVFNTVAYPNFKSELPILGADILWFGTSQKLLAILDYQPL---IQEKKYLEKYCSSLG--FIKKKYSAFDNNKMKNIYDS  138 (236)
T ss_pred             EEEEEEecCCCCCCCCccceeeeecCCCceEEEEEeCCCc---ccchhhhHHHHHHHH--HHHHhhHhhCcccCCCCcch
Confidence            99999999999999999999999965645 6668999995   567899999999865  4444   22     366888


Q ss_pred             ccccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhH
Q 020001          216 RPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDG  295 (332)
Q Consensus       216 ~PY~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~  295 (332)
                      .+|+|+          .-+..+-..         +.++    ..+.+.=.+.++.+|+... .+..+...+.+.+.++-.
T Consensus       139 ~~~FSp----------~~lf~R~~~---------~~~~----~~~~~~F~~~v~~Yl~i~~-~~~~~~~~~~~~i~~~Q~  194 (236)
T PRK13246        139 KKYFSP----------WVIICRGNK---------LNLD----RDLNNIFHSFVNNYLNINK-SNPVNQFLNLEEIKINQI  194 (236)
T ss_pred             HhhcCC----------ceEEEecCC---------cccc----HHHHHHHHHHHHHHHHHHH-hcccCCccCHHHHHHHHH
Confidence            888776          333433111         1222    2233344455544444433 222333333333333322


Q ss_pred             HhhhcceecccCCCc-ccccChhhHHHHHHHH
Q 020001          296 LIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI  326 (332)
Q Consensus       296 ~IR~k~iE~Dl~~~~-pRLFGqEvadRVv~ai  326 (332)
                      --=+-..|.||+--+ -++||+|=|||.+..+
T Consensus       195 ~Y~~yqaenDpar~vL~k~FG~~Wae~yI~~~  226 (236)
T PRK13246        195 KYDKYSFEKDPADKLFKSFFGEKWTKKFINKF  226 (236)
T ss_pred             HHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence            222355899999977 9999999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
2zxl_A	285	Crystal Structure Of Red Chlorophyll Catabolite Red		2e-82
3agb_A	276	F218v Mutant Of The Substrate-Free Form Of Red Chlo		3e-81
3aga_A	276	Crystal Structure Of Rcc-Bound Red Chlorophyll Cata		5e-81
2zxk_A	285	Crystal Structure Of Semet-Red Chlorophyll Cataboli		1e-78

>pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 285

Iteration: 1
 Score =  301 bits (772), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/288 (54%), Positives = 207/288 (71%), Gaps = 10/288 (3%)
Query: 47  APSSSPMDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYE 105
            P  S M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + 
Sbjct: 1   GPLGSSMEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFN 60
Query: 106 NQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIE 165
           N NG+A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++E
Sbjct: 61  NPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVE 120
Query: 166 LIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYL 225
           LIQSS  SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++
Sbjct: 121 LIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFV 180
Query: 226 RCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---V 282
           R   SP+A M+++D E      E  +L+ I+ +HV P AK+V+ +WL +C         V
Sbjct: 181 RSAFSPTASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVV 234
Query: 283 GESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
           GE ++  LE+RD   + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 235 GEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 282

>pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 276

Iteration: 1
 Score =  298 bits (763), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 152/275 (55%), Positives = 201/275 (73%), Gaps = 9/275 (3%)
Query: 59  GRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIR 118
            R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IR
Sbjct: 5   SRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIR 64
Query: 119 SGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLIL 178
           SG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLIL
Sbjct: 65  SGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLIL 124
Query: 179 DLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRV 238
           DL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R  +SP+A M+++
Sbjct: 125 DLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKI 184
Query: 239 DTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDG 295
           D E      E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD 
Sbjct: 185 DAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDK 238
Query: 296 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
             + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 239 SFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 273

>pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana Length = 276

Iteration: 1
 Score =  297 bits (761), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 152/275 (55%), Positives = 200/275 (72%), Gaps = 9/275 (3%)
Query: 59  GRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIR 118
            R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IR
Sbjct: 5   SRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIR 64
Query: 119 SGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLIL 178
           SG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLIL
Sbjct: 65  SGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLIL 124
Query: 179 DLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRV 238
           DL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A M+++
Sbjct: 125 DLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKI 184
Query: 239 DTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDG 295
           D E      E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD 
Sbjct: 185 DAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDK 238
Query: 296 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
             + K+IE DL   FPR+FG +V+SRV+  I++ F
Sbjct: 239 SFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 273

>pdb|2ZXK|A Chain A, Crystal Structure Of Semet-Red Chlorophyll Catabolite Reductase Length = 285

Iteration: 1
 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/284 (53%), Positives = 199/284 (70%), Gaps = 9/284 (3%)
Query: 50  SSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNG 109
           SS  D  +  R+KF EFPY S   +QL VDL STVEN L SQLLPC LPPDV+ + N NG
Sbjct: 5   SSXEDHDDHLRRKFXEFPYVSPTRKQLXVDLXSTVENRLQSQLLPCNLPPDVRNFNNPNG 64
Query: 110 TAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQS 169
           +A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQS
Sbjct: 65  SAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQS 124
Query: 170 SPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVI 229
           S  SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   
Sbjct: 125 SSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAF 184
Query: 230 SPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESD 286
           SP+A  +++D E      E  +L+ I+ +HV P AK+V+ +WL +C         VGE +
Sbjct: 185 SPTASXLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEE 238
Query: 287 KAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 330
           +  LE+RD   + K+IE DL   FPR FG +V+SRV+  I++ F
Sbjct: 239 RXELERRDKSFRRKSIEDDLDLQFPRXFGEEVSSRVVHAIKEAF 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
3agc_A	276	RED chlorophyll catabolite reductase, chloroplast;	1e-106

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A Length = 276

 Score =  311 bits (796), Expect = e-106
 Identities = 151/276 (54%), Positives = 200/276 (72%), Gaps = 9/276 (3%)

Query: 59  GRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIR 118
            R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IR
Sbjct: 5   SRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIR 64

Query: 119 SGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLIL 178
           SG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLIL
Sbjct: 65  SGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLIL 124

Query: 179 DLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRV 238
           DL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R  +SP+A M+++
Sbjct: 125 DLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKI 184

Query: 239 DTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGR---HVGESDKAYLEKRDG 295
           D        E  +L+ I+ +HV P AK+V+ +WL +C         VGE ++  LE+RD 
Sbjct: 185 DA------EEEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDK 238

Query: 296 LIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 331
             + K+IE DL   FPR+FG +V+SRV+  I++ F 
Sbjct: 239 SFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAFG 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
3agc_A	276	RED chlorophyll catabolite reductase, chloroplast;	100.0
2x9o_A	244	15,16- dihydrobiliverdin-ferredoxin oxidoreductas;	99.81
3i94_A	248	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	99.34
2g18_A	253	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	99.11
2vcl_A	233	Cyanobacterial phycoerythrobilin; cyanophages, bil	98.67

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A

Probab=100.00  E-value=7.2e-103  Score=732.88  Aligned_cols=269  Identities=56%  Similarity=0.937  Sum_probs=262.2

Q ss_pred             ccccceeeccCCCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhcccc
Q 020001           58 EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE  137 (332)
Q Consensus        58 ~~~~~~~efP~~s~~~r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~  137 (332)
                      ++++|||||||+|+|||++|++|+++||+|||++++||++|+||++|+|++|+|+|||++|||+++|+||||++|||||+
T Consensus         4 ~~~~~~~~fp~~~~~~r~lm~~L~~~ie~rl~~~llP~~~P~d~~~~~~~~G~a~gsl~~~sg~~~s~id~~i~SWl~~~   83 (276)
T 3agc_A            4 GSRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCK   83 (276)
T ss_dssp             --CCCGGGCTTSCHHHHHHHHHHHHHHHHHTTTTBCCCCCCHHHHEEECTTSSEEEEEEEEEBCTTCSEEEEEEEEEEEE
T ss_pred             cchhheeeCCCCChhHHHHHHHHHHHHHHHhcCccCCcCCChhHhhhcCcCCcccceeeeccCCCCCCcceeehhhhcCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccceeeeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCCCccc
Q 020001          138 LPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRP  217 (332)
Q Consensus       138 lp~GgalnItsL~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~Pe~~P  217 (332)
                      ||+||++|||+|++|||+++|+|||+|||||+||++++|+|||+||||||+|||||+||||+|++|.+|++++++|+++|
T Consensus        84 l~~G~al~I~nlv~yl~~~~D~Phfgidli~~g~~~ll~vLDl~PRkdLv~~~dYL~rYye~~~l~~lr~~~~~l~d~~p  163 (276)
T 3agc_A           84 IPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNP  163 (276)
T ss_dssp             CTTSCEEEEEEEEEEECTTCCCCCEEEEEEESSSSEEEEEEECCCSSCTTTCHHHHHHHTTSSSHHHHHHHHHTSTTEEE
T ss_pred             ccCccceeheeeeeecCcccCCchhhHHHHhcCCCceEEEEecCCccccccCHHHHHHHhcccccHHHHHHHHhCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcc---cchhhHHHHHHhh
Q 020001          218 YFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRD  294 (332)
Q Consensus       218 Y~S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~---v~e~Er~~L~~RD  294 (332)
                      |+|++||+|+++|||||||+|+|    ++|  ++|||||+++|.|+|+++|++||++|++.+..   |+|+||++|+|||
T Consensus       164 YfS~sLf~R~~~Spta~~~~~~~----~~g--~~l~eiv~~~l~p~~~e~L~~wl~~~~~~~~~~~~~~e~e~~~l~~rd  237 (276)
T 3agc_A          164 YVSPSLFVRSAVSPTASMLKIDA----EEE--DKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRD  237 (276)
T ss_dssp             CCCSCHHHHHHSCTTCEEEEEEC----SSH--HHHHHHHHHTHHHHHHHHHHHHHHHTTCSSSCCCCCCHHHHHHHHHHH
T ss_pred             ccChhHHhhhccCchhheeeccc----ccc--chHHHHHHHhhHHHHHHHHHHHHHHhhccCCccCCCChhHHHHHHHHH
Confidence            99999999999999999999999    444  89999999999999999999999999986665   8999999999999


Q ss_pred             HHhhhcceecccCCCcccccChhhHHHHHHHHHhhhcC
Q 020001          295 GLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA  332 (332)
Q Consensus       295 ~~IR~k~iE~Dl~~~~pRLFGqEvadRVv~air~~f~~  332 (332)
                      ++||+++||+||+++||||||||+|||||++|||+|||
T Consensus       238 ~~~r~~saE~Dpa~~l~r~FG~E~sdr~l~~~~~~~~~  275 (276)
T 3agc_A          238 KSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAFGV  275 (276)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhhcccCchhchHhhhCHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999986

>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}

Probab=99.81  E-value=1.3e-19  Score=166.88  Aligned_cols=213  Identities=17%  Similarity=0.217  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCcccccccccCCCeeEEEEEeeCCCCCcceeeeehhccccCCCCccccceeeeeec
Q 020001           74 RQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYL  153 (332)
Q Consensus        74 r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~GgalnItsL~v~L  153 (332)
                      .-++..|+..|+++   .+.|..+|+++++..+..+.+.+.-.+++++   +++ -+++|+...   |..+.|.|..+|.
T Consensus        11 ~p~l~~l~~~i~~~---~l~p~~~~~~l~~~~~~~~~~~i~n~~y~~~---~fR-k~r~~~~~~---g~~lqVLh~V~fP   80 (244)
T 2x9o_A           11 DSFLNELHSDITKR---GGSPLPLPEGLEECRSSKSSSVIQSWLWDVP---GFR-RWRVTRLDA---GDSLQVFNSVAYP   80 (244)
T ss_dssp             HHHHHHHHHHHHHT---TCEEECCCTTSSEEECTTTCCEEEEEEEECT---TEE-EEEEEEEEE---TTTEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHc---CCccCCCChHhhhhhcCCCceEEEEEEecCc---hHh-HHHHHHhcc---CCCcEEEEEEecc
Confidence            35688999999998   5666678899999999888899999999999   999 888888776   7789999999999


Q ss_pred             CCCCCCCceeeeeeeec-CCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHHH---Hhh---hCCC--cccccCcc-c
Q 020001          154 NSSTDAPNLLIELIQSS-PSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ---MLE---KVPE--VRPYFSSS-L  223 (332)
Q Consensus       154 ~pstDaPHF~~ElIq~s-Ptslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~---~le---k~Pe--~~PY~S~S-L  223 (332)
                      +|+.|.|+|.++|+..+ ...++.++||-|..   .+.+|.++||+...  ..++   .+.   ..|.  +.+|+|+. |
T Consensus        81 ~~~ydlPiFG~Dlv~~~~~~~l~AilDlqP~~---~d~~y~~~Y~~~L~--~l~~~~~~~~~~~~~~~~e~~~~FSp~~l  155 (244)
T 2x9o_A           81 DYNYDHPLMGVDLLWFGARQKLVAVLDFQPLV---QDKDYLDRYFSGLK--ELNQRFPDLNGEETMRSFDPNQYFSSWLL  155 (244)
T ss_dssp             CTTCCCCEEEEEEEEEGGGTEEEEEEEEECSC---CCHHHHHHHCHHHH--HHHHHCTTC--CCCCSSSCTTSSCCTTCE
T ss_pred             CCCCCCCeehhheeccCCCceEEEEEEcCCCC---ChhhchHHHHHHHH--HHHHHHHhhcCccCCChhhhHhhcCCceE
Confidence            99999999999999763 43454599999984   35799999999765  4443   232   3333  56677776 6


Q ss_pred             ceeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccch-hhHHHHHHhhHHhhhcce
Q 020001          224 YLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGE-SDKAYLEKRDGLIKNKTI  302 (332)
Q Consensus       224 yvRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e-~Er~~L~~RD~~IR~k~i  302 (332)
                      |+|            ..          +  +.+.+.+-+..+++|++|+++++ ++.++++ ++++.+.++..-..+...
T Consensus       156 f~R------------~~----------~--~~~~~~~~~af~~yL~~~l~~~~-~a~p~~~~~~~~~i~~~Q~~Y~~~qa  210 (244)
T 2x9o_A          156 FCR------------GG----------A--EQADLSLPKAFSAFLKAYWDLHD-NAKSIPSTIPPEEVKNLQDKYDIYSA  210 (244)
T ss_dssp             EEE------------EC----------H--HHHHHTHHHHHHHHHHHHHHHHH-HHTTSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             EEe------------CC----------c--HHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCchhHHHHHHHHHHHHHHHH
Confidence            666            11          1  22237788999999999999999 5777755 788888889999999999


Q ss_pred             ecccCCCc-ccccChhhHHHHHHHH
Q 020001          303 EIDLGSSF-PRLFGPQVASRVLGEI  326 (332)
Q Consensus       303 E~Dl~~~~-pRLFGqEvadRVv~ai  326 (332)
                      |.||+..+ -++||+|-|||.+..+
T Consensus       211 enDpar~vl~~~FG~ewae~yi~~~  235 (244)
T 2x9o_A          211 ERDPAHGLFTSHFGKDWSNRFLHEF  235 (244)
T ss_dssp             HHCSCHHHHHHHHCHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHcCHHHHHHHHHHc
Confidence            99999977 9999999999998753

>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*

Probab=99.34  E-value=3.2e-12  Score=118.33  Aligned_cols=220  Identities=17%  Similarity=0.226  Sum_probs=148.8

Q ss_pred             hhHHHHHHHHHHHHhhhc-cccCCCCCCcccccccccCC--CeeEEEEEeeCCCCCcceeeeehhccccCC-CCccccce
Q 020001           72 PVRQLMVDLVSTVENTLD-SQLLPCTLPPDVQYYENQNG--TAQASLQIRSGLKSSLIDFILGSWVHSELP-TGAALNIT  147 (332)
Q Consensus        72 ~~r~lm~~L~s~ve~RL~-~~llPst~P~Dv~~y~n~~G--~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp-~GgalnIt  147 (332)
                      ..--+...|+..|+++.+ ..|.|..+|+++.+-.+.-|  .....=.++.++   +++=     +|+..- .|..+.|.
T Consensus        16 ~~~pli~~La~~i~~~~~~~~l~p~~ip~~l~~~~~~~~~~~~~i~n~~yq~~---~fRk-----~r~~~~~~G~~lqVL   87 (248)
T 3i94_A           16 TLNPMIQQLALAIAASWQSLPLKPYQLPEDLGYVEGRLEGEKLVIENRCYQTP---QFRK-----MHLELAKVGKGLDIL   87 (248)
T ss_dssp             GSCHHHHHHHHHHHHHHTTSCCEECCCGGGCCCEEECSSSCCEEEEEEEEECS---SEEE-----EEEEEEEETTTEEEE
T ss_pred             ccChHHHHHHHHHHHHHhcCCCeecCCchhhhhhhcccCCCccEEEEEeecCc---hHHH-----HHHHHhhcCCCcEEE
Confidence            334577788888888755 45567778999988765322  222222333344   4441     223221 47799999


Q ss_pred             eeeeecCCCCCCCceeeeeeeecCCeE-EEEEecCCccCCCCChhHHHHhhcCCChhHHHH-HhhhCCCcccccCcccce
Q 020001          148 SLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ-MLEKVPEVRPYFSSSLYL  225 (332)
Q Consensus       148 sL~v~L~pstDaPHF~~ElIq~sPtsl-vl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~-~lek~Pe~~PY~S~SLyv  225 (332)
                      +..+|.++..|.|=|.++|+.+ |... +.++||=|=.+   +.+|.++|++...  .... .+.+.-+..|+-      
T Consensus        88 n~V~fP~~~yDLPiFG~Dlv~~-~~~~~lailDlqPl~~---d~~y~~~Y~~~l~--~l~~~~f~~~r~l~~wg------  155 (248)
T 3i94_A           88 HCVMFPEPLYGLPLFGCDIVAG-PGGVSAAIADLSPTQS---DRQLPAAYQKSLA--ELGQPEFEQQRELPPWG------  155 (248)
T ss_dssp             EEEEEECGGGTCCEEEEEEEEE-TTEEEEEEEEEECCST---TSCCCHHHHHHHH--HTCCCCCSSBCCCCGGG------
T ss_pred             EEEEccCCCCCCCccceeEecc-CCceEEEEEECCCCCC---cccchHHHHHHHH--HhchhhhcCcccCCchh------
Confidence            9999999999999999999997 5554 68999999554   6677777776533  2111 111111122231      


Q ss_pred             eeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceecc
Q 020001          226 RCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEID  305 (332)
Q Consensus       226 Rs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~D  305 (332)
                       ..+||..++++-..           -||.  +.+-..+++.+++|++.+. .+.+++++++..+.++..---+...|.|
T Consensus       156 -~iFSp~~lf~Rp~~-----------~ee~--~~f~~~~~~Yl~~~~~~~~-~a~p~~~~~~~~~~~~Q~~Y~~~qaenD  220 (248)
T 3i94_A          156 -EIFSEYCLFIRPSN-----------VTEE--ERFVQRVVDFLQIHCHQSI-VAEPLSEAQTLEHRQGQIHYCQQQQKND  220 (248)
T ss_dssp             -GGSCTTCEEECCCS-----------HHHH--HHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             -hhCCCceEEecCCC-----------HHHH--HHHHHHHHHHHHHHHHHHH-hCCCCCchhHHHHHHHHHHHHHHHHHhC
Confidence             25888888888321           1222  6677788999999999999 5777877666655555555556779999


Q ss_pred             cCCCc-ccccChhhHHHHHHHH
Q 020001          306 LGSSF-PRLFGPQVASRVLGEI  326 (332)
Q Consensus       306 l~~~~-pRLFGqEvadRVv~ai  326 (332)
                      |+.-+ -+.||+|-|||.+..+
T Consensus       221 par~vL~~~FG~eWae~yi~~~  242 (248)
T 3i94_A          221 KTRRVLEKAFGEAWAERYMSQV  242 (248)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHT
T ss_pred             cHHHHHHHHhChHHHHHHHHHh
Confidence            99966 9999999999998653

>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}

Probab=99.11  E-value=2.1e-10  Score=106.45  Aligned_cols=215  Identities=17%  Similarity=0.208  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHhhhc--cccCCCCCCcccccccccCCCeeEEE--EEeeCCCCCcceeeeehhccccC-CCCcccccee
Q 020001           74 RQLMVDLVSTVENTLD--SQLLPCTLPPDVQYYENQNGTAQASL--QIRSGLKSSLIDFILGSWVHSEL-PTGAALNITS  148 (332)
Q Consensus        74 r~lm~~L~s~ve~RL~--~~llPst~P~Dv~~y~n~~G~a~gSL--~vrSG~~~S~IDf~l~SWlh~~l-p~GgalnIts  148 (332)
                      ..++..|++.|+.+++  ..|.|..+|+++.+-.+..|+-...+  .++.++   +++-     +|+.. =.|..+.|.+
T Consensus        22 ~p~l~~l~~~i~~~~~~~~~l~p~~lp~~l~~~~~~~~~~~l~i~n~~yq~~---~fRk-----~r~e~~~~G~~lqVLn   93 (253)
T 2g18_A           22 HPLIRQLADCIEEVWHQHLDLSPYHLPAELGYVEGRLEGEKLTIENRCYQTP---QFRK-----MHLELAKVGNMLDILH   93 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCEECCCCGGGSEEEEEETTEEEEEEEEEEECS---SEEE-----EEEEEEEETTTEEEEE
T ss_pred             cHHHHHHHHHHHHHHhccCCCeeccCchHHhhhhcccCCCceEEEEeeeecc---hhhh-----hHHhhhhcCCCcEEEE
Confidence            4578888999999988  56788889999988766444433222  334444   3332     13331 1477899999


Q ss_pred             eeeecCCCCCCCceeeeeeeecCCeEEEEEecCCccCCCCChhHHHHhhcCCChhHHH-HHh---hhCCCcccccCcccc
Q 020001          149 LSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYR-QML---EKVPEVRPYFSSSLY  224 (332)
Q Consensus       149 L~v~L~pstDaPHF~~ElIq~sPtslvl~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R-~~l---ek~Pe~~PY~S~SLy  224 (332)
                      ..+|.+++.|.|=|.++++..+..-.+.++||=|=.+   +..|.++|++...  ..+ ..+   .++|.+-.       
T Consensus        94 ~V~fP~~~yDLPiFG~Dlv~~~~~~~l~ilDlqPl~~---d~~~~~~Y~~~L~--~L~~~~f~~~r~lp~wg~-------  161 (253)
T 2g18_A           94 CVMFPRPEYDLPMFGCDLVGGRGQISAAIADLSPVHL---DRTLPESYNSALT--SLNTLNFSQPRELPEWGN-------  161 (253)
T ss_dssp             EEEEECTTSCCCEEEEEEEEETTEEEEEEEEEECSST---TCCCCHHHHHHHH--HSCCCCCSSBCCCCTTGG-------
T ss_pred             EEEcCCCCCCCCeeeeeeeccCCceEEEEEECCCCCC---cccchHHHHHHHH--hhccccccccccCCchhh-------
Confidence            9999999999999999999995544557999977442   3344455554331  111 112   22333332       


Q ss_pred             eeeecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCcccchhhHHHHHHhhHHhhhcceec
Q 020001          225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEI  304 (332)
Q Consensus       225 vRs~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~~RD~~IR~k~iE~  304 (332)
                         .+||..++++....           ||.  +..-..+++.+++|++.+. .+.++..++.+.+.+.-.---+...|.
T Consensus       162 ---iFSp~~lf~Rp~~~-----------ee~--~aF~~~~~~yL~~~~~~~~-~a~~~~~~~~~~i~~~Q~~Y~~~qaen  224 (253)
T 2g18_A          162 ---IFSDFCIFVRPSSP-----------EEE--AMFLGRVREFLQVHCQGAI-AASPVSAEQKQQILAGQHNYCSKQQQN  224 (253)
T ss_dssp             ---GSCTTCEEECCCSH-----------HHH--HHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hcCcceEEeccCch-----------HHH--HHHHHHHHHHHHHHHHHHH-hCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence               58898888887542           121  4445557888888888888 466666555554444333334466899


Q ss_pred             ccCCCc-ccccChhhHHHHHHH
Q 020001          305 DLGSSF-PRLFGPQVASRVLGE  325 (332)
Q Consensus       305 Dl~~~~-pRLFGqEvadRVv~a  325 (332)
                      ||+--+ -+.||+|-|||.+..
T Consensus       225 Dpar~vL~~~FG~ewae~yi~~  246 (253)
T 2g18_A          225 DKTRRVLEKAFGVDWAENYMTT  246 (253)
T ss_dssp             CTHHHHHHHHHCHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCHHHHHHHHHh
Confidence            999865 999999999998865

>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A*

Probab=98.67  E-value=2.6e-08  Score=91.99  Aligned_cols=193  Identities=15%  Similarity=0.151  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCccccccccc--CCCeeEEEEEeeCCCCCcceeeeehhccccCCCCccccceeeee
Q 020001           74 RQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQ--NGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSA  151 (332)
Q Consensus        74 r~lm~~L~s~ve~RL~~~llPst~P~Dv~~y~n~--~G~a~gSL~vrSG~~~S~IDf~l~SWlh~~lp~GgalnItsL~v  151 (332)
                      ..++..|++.+     ..|.|..+|+++.+=...  .+.+...=..+.++   +++-|     |+.+-.|..+.|.+..+
T Consensus        25 ~p~i~~l~~~i-----~~L~p~~l~~~l~~~e~~~~~~~~~i~n~~y~s~---~fRK~-----r~~~~~g~~lqVLn~V~   91 (233)
T 2vcl_A           25 QNYIDALFETF-----PQLEISEVWAKWDGGNVTKDGGDAKLTANIRTGE---HFLKA-----REAHIVDPNSDIYNTIL   91 (233)
T ss_dssp             HHHHHHHHHHC-----TTCEEEEEEEEEEECC-----CCEEEEEEEEEET---TEEEE-----EEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHhc-----cCCcccCCchHhcccccccCCCceEEEehhhcCc---HHHHH-----HHHHhcCCCCeEEEEEe
Confidence            44555666665     388888899998754311  11122222223333   33322     33322378999999999


Q ss_pred             ecCCCCCCCceeeeeeeecCCeEEE-EEecCCccCCCCChhHHHHhhcCCChhHHHHHhhhCC---CcccccCcccceee
Q 020001          152 YLNSSTDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVP---EVRPYFSSSLYLRC  227 (332)
Q Consensus       152 ~L~pstDaPHF~~ElIq~sPtslvl-~LDL~PRkDLvl~pdYL~~yYE~t~ld~~R~~lek~P---e~~PY~S~SLyvRs  227 (332)
                      |.+++.|.|=|.++|+.. |+...+ ++||=|=.         ++|++...  ..- .-+++|   ++.+|+|+-||+| 
T Consensus        92 fP~~~yDLPiFG~Dlv~~-~~~~~lailDlqPl~---------~~Y~~~L~--~Lp-~~~~lp~fye~~~~FSp~lf~R-  157 (233)
T 2vcl_A           92 YPKTGADLPCFGMDLMKF-SDKKVIIVFDFQHPR---------EKYLFSVD--GLP-EDDGKYRFFEMGNHFSKNIFVR-  157 (233)
T ss_dssp             EECBSSCCCEEEEEEEEE-ETTEEEEEEEEECSS---------TTCCCCCT--TSC-CCCSSSCCSCTTSSCCTTCEEE-
T ss_pred             cCCCCCCCCccceeeecc-CCceEEEEEeCCccH---------HHHHHHHh--cCC-CCCCCCCccchhhccCCCeEEe-
Confidence            999999999999999999 556555 99998855         77777554  221 146778   8888888877777 


Q ss_pred             ecCcceEEEEeecccccCCCccchhHHHHhhchhhHHHHHHHHHHHhhhcCCccc---chhhHHHHHHhhHHhhhcceec
Q 020001          228 VISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRHV---GESDKAYLEKRDGLIKNKTIEI  304 (332)
Q Consensus       228 ~~SPTAi~~~i~~~~~~~~g~~~~leeIv~~~i~p~A~evl~~WL~~c~~~~~~v---~e~Er~~L~~RD~~IR~k~iE~  304 (332)
                         |       ..           -+ .+...+ +..++.|+.|++.+.. +.++   -+.++.+..        ...|.
T Consensus       158 ---p-------~~-----------~~-e~~~~l-~af~~YL~~y~~~~~~-a~p~~~i~~~Q~~Y~~--------~q~en  205 (233)
T 2vcl_A          158 ---Y-------CK-----------PD-EVDQYL-DTFKLYLTKYKEMIDN-NKPVGEDTTVYSDFDT--------YMTEL  205 (233)
T ss_dssp             ---E-------EC-----------GG-GGGGGH-HHHHHHHHHHHHHHHH-HCCCBCCGGGGHHHHH--------HHHHC
T ss_pred             ---e-------CC-----------HH-HHHHHH-HHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHH--------HHHHh
Confidence               1       11           01 123556 8899999999999985 4444   334444432        33678


Q ss_pred             ccCCCc-ccccChhhHHHHHHH
Q 020001          305 DLGSSF-PRLFGPQVASRVLGE  325 (332)
Q Consensus       305 Dl~~~~-pRLFGqEvadRVv~a  325 (332)
                      ||+--+ -+.||+|-|||.+..
T Consensus       206 Dpar~vL~~~FG~eWae~yi~~  227 (233)
T 2vcl_A          206 DPVRGYMKNKFGEGRSEAFVND  227 (233)
T ss_dssp             --CCHHHHHHHCHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCHHHHHHHHHH
Confidence            998865 999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00