Citrus Sinensis ID: 020004

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
cccEEEEccccccccHHHHHHHHHHcccEEEEEEEEEEEEccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHccccccEEccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccccHHHHHHHHHHHcccEEcccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHcccccccccccHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
ccEEEEEEccccccHHHHHHHHHHHcccEEEccEEEEEEEcccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHccccccccccccccccccccEccccccccccccccHHccccHHHHHHHHHHHHHHcccccccHHHEEEcccccHccccccccccccHHHHHHHHHcccccccccHHHHEEEEHcccEcccc
MVKVLAltdhdtmsgiPEAIETARRFGmkiipgveISTIFCqrgseseepvHILAYysscgpskyEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIagkgvapgRLHVARAMVEAGHVENLKQAFARYLydggpaystgsepLAEVAVQLIHRTGglavlahpwalknpAAIIRKLKDVGlhglevyrsdgklvaytDLADTYgllklggsdyhgrgghgeselgsvklpvlvLNDFLKVARPIWCGAIKEILEsyadepsdsnlshitrygrgkmlkrnyplncgkglVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
mvkvlaltdhdtmsgiPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILesyadepsdsnlSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
MVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIlklnklklplkWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLggsdyhgrgghgESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
**************GIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYA*******LSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNE******FEAIK***********
MVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEER*SAEFEAIKLKLSHVSIN**
MVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
MVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVS****
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MVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
O54453293 Protein TrpH OS=Salmonell yes no 0.638 0.723 0.329 2e-18
P44176274 Protein TrpH OS=Haemophil yes no 0.635 0.770 0.327 5e-18
P77766293 Protein TrpH OS=Escherich N/A no 0.635 0.720 0.318 2e-16
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpH PE=3 SV=3 Back     alignment and function desciption
 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 19/231 (8%)

Query: 2   VKVLALTDHDTMSGIPEAIETARRFGM--KIIPGVEISTIFCQRGSESEEPVHILAYYSS 59
           V  LA+TDHDT + IP A E   R G+   +IPGVEIST++     E+ E +HI+     
Sbjct: 41  VGTLAITDHDTTAAIPAAREEISRSGLALNLIPGVEISTVW-----ENHE-IHIVGLNID 94

Query: 60  CGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVAR 119
                +  + +FLA   + R  R + +  +L K  +P  WE   ++A  G A  R H AR
Sbjct: 95  IA---HPAMRDFLAQQTERRQARGRLIAERLEKAHIPGAWEGALRLANGG-AVTRGHFAR 150

Query: 120 AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA 179
            +VE G    +   F +YL  G   Y        E A+ +IH +GG AVLAHP      A
Sbjct: 151 FLVECGKAATMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYDLSA 210

Query: 180 AIIRKL----KDVGLHGLEV---YRSDGKLVAYTDLADTYGLLKLGGSDYH 223
             +++L     D     +EV    +S  +      LA  + L    GSD+H
Sbjct: 211 KWLKRLVAHFADHHGDAMEVAQCQQSPNERTQLATLARQHHLWASLGSDFH 261

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trpH PE=3 SV=1 Back     alignment and function description
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
449438183 443 PREDICTED: protein TrpH-like [Cucumis sa 0.993 0.744 0.770 1e-151
224059026408 predicted protein [Populus trichocarpa] 0.996 0.811 0.791 1e-145
359485749341 PREDICTED: protein trpH-like [Vitis vini 0.990 0.964 0.790 1e-145
356524846 458 PREDICTED: protein trpH-like [Glycine ma 0.996 0.722 0.762 1e-143
296085663325 unnamed protein product [Vitis vinifera] 0.957 0.978 0.783 1e-138
356512073 455 PREDICTED: protein trpH-like [Glycine ma 0.984 0.718 0.759 1e-138
297836026 434 PHP domain-containing protein [Arabidops 0.993 0.760 0.684 1e-136
18397349 434 Polymerase/histidinol phosphatase-like p 0.987 0.755 0.682 1e-135
15450377 433 At2g13860/F13J11.19 [Arabidopsis thalian 0.987 0.757 0.682 1e-135
226498434416 protein trpH [Zea mays] gi|195620186|gb| 0.978 0.781 0.604 1e-112
>gi|449438183|ref|XP_004136869.1| PREDICTED: protein TrpH-like [Cucumis sativus] gi|449478899|ref|XP_004155448.1| PREDICTED: protein TrpH-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/331 (77%), Positives = 294/331 (88%), Gaps = 1/331 (0%)

Query: 2   VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRG-SESEEPVHILAYYSSC 60
           VKVLALTDHDTMSGIPEA+E ARRFG+KIIPGVEISTIF   G SESEEPVHILAYYSSC
Sbjct: 108 VKVLALTDHDTMSGIPEAVEAARRFGIKIIPGVEISTIFSNGGDSESEEPVHILAYYSSC 167

Query: 61  GPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 120
           GP+K E+LE FL NIR+GRFLRAK+M+ KLN+LKLPLKW+HVAKI GKGVAPGRLHVARA
Sbjct: 168 GPAKIEKLEKFLENIREGRFLRAKNMVSKLNELKLPLKWDHVAKITGKGVAPGRLHVARA 227

Query: 121 MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAA 180
           +VEAG+VENLKQAF+RYL+DGGPAYSTGSEP A  A+QLIH TGG+AVLAHPWALKNP A
Sbjct: 228 LVEAGYVENLKQAFSRYLFDGGPAYSTGSEPCAAEAIQLIHDTGGMAVLAHPWALKNPVA 287

Query: 181 IIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPV 240
           +IR+LKD GLHGLEVYRSDG+L AY+DLAD YGLLKLGGSD+HGRGGH ESE+GSV LPV
Sbjct: 288 VIRRLKDAGLHGLEVYRSDGRLAAYSDLADNYGLLKLGGSDFHGRGGHSESEVGSVNLPV 347

Query: 241 LVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVD 300
           L ++DFLK ARP+WC AI++ILESY +EPS+SNL+ ITR+GR ++LK       G  L++
Sbjct: 348 LAMHDFLKAARPVWCSAIRDILESYVEEPSESNLAKITRFGRTRVLKGGSSPGSGNDLIE 407

Query: 301 ECLSLWLTNEERQSAEFEAIKLKLSHVSINQ 331
            CL+LWLTNEE+Q+ EFEAI+LKLSH+SINQ
Sbjct: 408 RCLTLWLTNEEKQNDEFEAIRLKLSHISINQ 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224059026|ref|XP_002299681.1| predicted protein [Populus trichocarpa] gi|222846939|gb|EEE84486.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359485749|ref|XP_002264419.2| PREDICTED: protein trpH-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524846|ref|XP_003531039.1| PREDICTED: protein trpH-like [Glycine max] Back     alignment and taxonomy information
>gi|296085663|emb|CBI29462.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512073|ref|XP_003524745.1| PREDICTED: protein trpH-like [Glycine max] Back     alignment and taxonomy information
>gi|297836026|ref|XP_002885895.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331735|gb|EFH62154.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18397349|ref|NP_565360.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] gi|20197611|gb|AAD15431.2| expressed protein [Arabidopsis thaliana] gi|20197796|gb|AAM15252.1| expressed protein [Arabidopsis thaliana] gi|330251170|gb|AEC06264.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15450377|gb|AAK96482.1| At2g13860/F13J11.19 [Arabidopsis thaliana] gi|20466107|gb|AAM19975.1| At2g13860/F13J11.19 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|226498434|ref|NP_001148541.1| protein trpH [Zea mays] gi|195620186|gb|ACG31923.1| protein trpH [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2043738434 AT2G13840 [Arabidopsis thalian 0.987 0.755 0.625 4.2e-111
UNIPROTKB|Q3Z644287 DET1610 "PHP domain N-terminal 0.753 0.871 0.313 1e-29
TIGR_CMR|DET_1610287 DET_1610 "PHP domain N-termina 0.753 0.871 0.313 1e-29
UNIPROTKB|Q3A9Z4278 CHY_2227 "PHP domain protein" 0.614 0.733 0.334 6.6e-26
TIGR_CMR|CHY_2227278 CHY_2227 "PHP domain protein" 0.614 0.733 0.334 6.6e-26
UNIPROTKB|Q8ECV6286 trpH "PHP family metal-depende 0.554 0.643 0.34 6.5e-19
TIGR_CMR|SO_3017286 SO_3017 "TrpH family protein" 0.554 0.643 0.34 6.5e-19
UNIPROTKB|Q74D71288 GSU1448 "Metal-dependent phosp 0.596 0.687 0.313 4.6e-18
TIGR_CMR|GSU_1448288 GSU_1448 "PHP domain protein" 0.596 0.687 0.313 4.6e-18
UNIPROTKB|Q60BV5277 MCA0359 "PHP domain protein" [ 0.614 0.736 0.298 7.4e-15
TAIR|locus:2043738 AT2G13840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 205/328 (62%), Positives = 257/328 (78%)

Query:     2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCG 61
             VKVL+LTDHDTM+G+PEA+E  RRFG+KIIPG+EIST+F  R S SEEPVHILAYY + G
Sbjct:    96 VKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPGIEISTLFGLRDSGSEEPVHILAYYGTSG 155

Query:    62 PSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAM 121
             P+ Y+ELE+FL  IRDGRF+R ++M+           WEHV +IAGK VAPGR+HVARA+
Sbjct:   156 PALYDELEDFLVKIRDGRFVRGREMVLKLNKLKIPLKWEHVTRIAGKDVAPGRMHVARAL 215

Query:   122 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAI 181
             +EAG+VENL+QAF +YL+DGGPAY+TG+EP+AE AV+LI +TGG+AVLAHPWALKN   I
Sbjct:   216 LEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVKLICKTGGVAVLAHPWALKNHVGI 275

Query:   182 IRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLXXXXXXXXXXXXESELGSVKLPVL 241
             IR+LKD GLHG+EVYRSDGKL  +++LADTY LLKL            ESELGSV LPV 
Sbjct:   276 IRRLKDAGLHGVEVYRSDGKLEVFSELADTYNLLKLGGSDYHGKGGRNESELGSVNLPVT 335

Query:   242 VLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDE 301
              L DFL V RPIWC AIK  + ++ D+PSDSNLS+I R+ + ++LK N   +CGK L+D 
Sbjct:   336 ALQDFLNVGRPIWCEAIKATMRAFLDQPSDSNLSNILRFDKARILKGNSAWSCGKELMDR 395

Query:   302 CLSLWLTNEERQSAEFEAIKLKLSHVSI 329
             CL++WLT++ER S +FEA++LKLS V I
Sbjct:   396 CLAIWLTSDERNSNDFEALRLKLSFVPI 423
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003824 "catalytic activity" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006260 "DNA replication" evidence=IEA;ISS
UNIPROTKB|Q3Z644 DET1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1610 DET_1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z4 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2227 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q8ECV6 trpH "PHP family metal-dependent phosphoesterases TrpH" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3017 SO_3017 "TrpH family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q74D71 GSU1448 "Metal-dependent phosphoesterase, PHP family" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1448 GSU_1448 "PHP domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q60BV5 MCA0359 "PHP domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_I000518
hypothetical protein (408 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CMS
SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC [...] (230 aa)
•       0.531
fgenesh4_pg.C_scaffold_18770000001
Predicted protein (302 aa)
•       0.487
eugene3.139720002
Predicted protein (128 aa)
•       0.455
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
•       0.426

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
COG0613258 COG0613, COG0613, Predicted metal-dependent phosph 2e-29
cd07438155 cd07438, PHP_HisPPase_AMP, Polymerase and Histidin 7e-19
cd07438155 cd07438, PHP_HisPPase_AMP, Polymerase and Histidin 1e-16
smart0048167 smart00481, POLIIIAc, DNA polymerase alpha chain l 9e-08
cd07432129 cd07432, PHP_HisPPase, Polymerase and Histidinol P 3e-07
pfam02811174 pfam02811, PHP, PHP domain 1e-05
COG0587 1139 COG0587, DnaE, DNA polymerase III, alpha subunit [ 2e-05
PRK00448 1437 PRK00448, polC, DNA polymerase III PolC; Validated 7e-04
cd07435268 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidin 0.001
COG2176 1444 COG2176, PolC, DNA polymerase III, alpha subunit ( 0.001
PRK05672 1046 PRK05672, dnaE2, error-prone DNA polymerase; Valid 0.002
>gnl|CDD|223686 COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only] Back     alignment and domain information 
 Score =  112 bits (283), Expect = 2e-29
 Identities = 81/237 (34%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 2   VKVLALTDHDTMSGIPEAIE-TARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSC 60
           V VLA+TDHDT+ G+ EA      R G+ +IPG+EIST      +     +HIL      
Sbjct: 31  VDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEIST------TWGGHIIHILGLGI-- 82

Query: 61  GPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 120
                E L   LA  +  R  R +++  +L K  +P  +E   K+AG G    R H+AR 
Sbjct: 83  -DITDEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAIT-RAHIARD 140

Query: 121 MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA- 179
            VE G+    +  F +YL  G P Y       +E  V  IH  GG AVLAHP        
Sbjct: 141 AVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLK 200

Query: 180 AIIRKLKDVGLHGLEVYRSDGK---LVAYTDLADTYGLLKLGGSDYHGRGG--HGES 231
            ++    D G  G+EV               LA  +GLL   GSD+H  G    GES
Sbjct: 201 RLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPGDWIEGES 257

Length = 258
>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound Back     alignment and domain information
>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound Back     alignment and domain information
>gnl|CDD|197753 smart00481, POLIIIAc, DNA polymerase alpha chain like domain Back     alignment and domain information
>gnl|CDD|213987 cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase Back     alignment and domain information
>gnl|CDD|217238 pfam02811, PHP, PHP domain Back     alignment and domain information
>gnl|CDD|223660 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated Back     alignment and domain information
>gnl|CDD|213990 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at PolC gene Back     alignment and domain information
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235553 PRK05672, dnaE2, error-prone DNA polymerase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
COG0613258 Predicted metal-dependent phosphoesterases (PHP fa 99.98
TIGR00375374 conserved hypothetical protein TIGR00375. The memb 99.38
PRK00448 1437 polC DNA polymerase III PolC; Validated 99.3
PRK09248246 putative hydrolase; Validated 99.17
smart0048167 POLIIIAc DNA polymerase alpha chain like domain. D 98.61
PRK05672 1046 dnaE2 error-prone DNA polymerase; Validated 98.55
PF02811175 PHP: PHP domain; InterPro: IPR004013 The PHP (Poly 98.53
PRK08392215 hypothetical protein; Provisional 98.4
PRK06361212 hypothetical protein; Provisional 98.38
PRK09532 874 DNA polymerase III subunit alpha; Reviewed 98.21
PRK00912237 ribonuclease P protein component 3; Provisional 98.12
TIGR01856253 hisJ_fam histidinol phosphate phosphatase HisJ fam 98.07
PRK07135 973 dnaE DNA polymerase III DnaE; Validated 98.04
PRK07328269 histidinol-phosphatase; Provisional 98.01
PRK08123270 histidinol-phosphatase; Reviewed 97.75
COG1379403 PHP family phosphoesterase with a Zn ribbon [Gener 97.62
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 97.54
PF1326356 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3 97.32
PRK05673 1135 dnaE DNA polymerase III subunit alpha; Validated 97.26
PRK08609570 hypothetical protein; Provisional 97.24
TIGR00594 1022 polc DNA-directed DNA polymerase III (polc). This 97.02
PRK06826 1151 dnaE DNA polymerase III DnaE; Reviewed 96.69
PRK07374 1170 dnaE DNA polymerase III subunit alpha; Validated 96.58
COG1387237 HIS2 Histidinol phosphatase and related hydrolases 96.5
PRK07279 1034 dnaE DNA polymerase III DnaE; Reviewed 96.38
PRK05898 971 dnaE DNA polymerase III DnaE; Validated 96.23
COG0587 1139 DnaE DNA polymerase III, alpha subunit [DNA replic 96.09
PRK07945335 hypothetical protein; Provisional 96.01
PRK06740331 histidinol-phosphatase; Validated 95.88
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 95.56
PRK06920 1107 dnaE DNA polymerase III DnaE; Reviewed 95.12
PRK05588255 histidinol-phosphatase; Provisional 94.98
PRK07329246 hypothetical protein; Provisional 94.57
COG4464254 CapC Capsular polysaccharide biosynthesis protein 88.26
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only] Back     alignment and domain information 
Probab=99.98  E-value=7.7e-32  Score=253.36  Aligned_cols=216  Identities=37%  Similarity=0.495  Sum_probs=196.4

Q ss_pred             ccEEEEecCCCcCCHHHHH-HHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHHHHHH
Q 020004            2 VKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRF   80 (332)
Q Consensus         2 l~~iAITDHDTv~g~~ea~-~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r~~R~   80 (332)
                      ++++|||||||+.|+.++. ..+..+|+.+|||+||||.|.      +..+|+++|+++.   ....+.+.+.+.+..|.
T Consensus        31 ~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~------~~~ih~~~~~~~~---~~~~~~~~~~~~~~~~~  101 (258)
T COG0613          31 VDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWG------GHIIHILGLGIDI---TDEPLVEGLARQQLYRE  101 (258)
T ss_pred             CCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccC------CeEEEEEeecccc---cchhhhhhhhhccccHH
Confidence            6899999999999999997 667788999999999999996      7899999999985   34568899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHHH
Q 020004           81 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLI  160 (332)
Q Consensus        81 ~r~~~iv~~L~~~G~~i~~e~v~~~ag~~~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~I  160 (332)
                      +|++++.+++...+++-.++.+...++.+ .+.|+|+++.+|+.+++.+..+.|++|+..++++|++..+.+.++.|..+
T Consensus       102 ~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~  180 (258)
T COG0613         102 ERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEAHVGAI  180 (258)
T ss_pred             HHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccchHHHHHHHHhccCcccCcccccCHHHHHHHH
Confidence            99999999999999999999998877654 46799999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEEEeCCCCCCCh-HHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeecCCCCCCCC
Q 020004          161 HRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGG  227 (332)
Q Consensus       161 ~~aGGiaVlAHP~~~~~~-~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD~Hg~~~  227 (332)
                      +.+||++|+|||.++..+ ..++..+.+.|.||+|++++..   +...+..+++.++++.|+|||||..+.
T Consensus       181 ~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~k~~~~l~s~gs~fh~~~~  251 (258)
T COG0613         181 HGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPGD  251 (258)
T ss_pred             hhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHHHHHHHhhhhhcccccccCCCc
Confidence            999999999999988654 5788888999999999998764   456788899999999999999998864

>TIGR00375 conserved hypothetical protein TIGR00375 Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>PRK09248 putative hydrolase; Validated Back     alignment and domain information
>smart00481 POLIIIAc DNA polymerase alpha chain like domain Back     alignment and domain information
>PRK05672 dnaE2 error-prone DNA polymerase; Validated Back     alignment and domain information
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain Back     alignment and domain information
>PRK08392 hypothetical protein; Provisional Back     alignment and domain information
>PRK06361 hypothetical protein; Provisional Back     alignment and domain information
>PRK09532 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>PRK00912 ribonuclease P protein component 3; Provisional Back     alignment and domain information
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family Back     alignment and domain information
>PRK07135 dnaE DNA polymerase III DnaE; Validated Back     alignment and domain information
>PRK07328 histidinol-phosphatase; Provisional Back     alignment and domain information
>PRK08123 histidinol-phosphatase; Reviewed Back     alignment and domain information
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only] Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B Back     alignment and domain information
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>PRK08609 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00594 polc DNA-directed DNA polymerase III (polc) Back     alignment and domain information
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK05898 dnaE DNA polymerase III DnaE; Validated Back     alignment and domain information
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07945 hypothetical protein; Provisional Back     alignment and domain information
>PRK06740 histidinol-phosphatase; Validated Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK05588 histidinol-phosphatase; Provisional Back     alignment and domain information
>PRK07329 hypothetical protein; Provisional Back     alignment and domain information
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
2yb1_A292 Structure Of An Amidohydrolase From Chromobacterium 2e-11
3e0f_A301 Crystal Structure Of A Putative Metal-Dependent Pho 4e-10
>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And Phosphate. Length = 292 Back     alignment and structure 
Iteration: 1

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 13/192 (6%)
Query: 8   TDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEE 67
           TDHD   G+ EA   A R G+  + GVE+S       S     VHI+       P++   
Sbjct: 37  TDHDCTGGLAEAAAAAARRGIPFLNGVEVSV------SWGRHTVHIVGL--GIDPAE-PA 87
Query: 68  LENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHV 127
           L   L +IR+GR  RA+ M            ++   +         R H AR +V++G V
Sbjct: 88  LAAGLKSIREGRLERARQMGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAV 147
Query: 128 ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL-- 185
           ++++  F +YL  G P Y +      E AV  I   GG+AV+AHP        +I +L  
Sbjct: 148 KDMRTVFRKYLTPGKPGYVSHQWASLEDAVGWIVGAGGMAVIAHPGRYDMGRTLIERLIL 207
Query: 186 --KDVGLHGLEV 195
             +  G  G+EV
Sbjct: 208 DFQAAGGQGIEV 219
>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent Phosphoesterase (Bad_1165) From Bifidobacterium Adolescentis Atcc 15703 At 2.40 A Resolution Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
2yb1_A292 Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v 2e-82
3o0f_A301 Putative metal-dependent phosphoesterase; structur 5e-78
2anu_A255 Hypothetical protein TM0559; predicted metal-depen 2e-08
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Length = 292 Back     alignment and structure
 Score =  250 bits (641), Expect = 2e-82
 Identities = 79/278 (28%), Positives = 119/278 (42%), Gaps = 29/278 (10%)

Query: 2   VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCG 61
             +LALTDHD   G+ EA   A R G+  + GVE+S  + +        VHI+       
Sbjct: 31  PALLALTDHDCTGGLAEAAAAAARRGIPFLNGVEVSVSWGRHT------VHIVGLGIDP- 83

Query: 62  PSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 121
                 L   L +IR+GR  RA+ M   L    +   ++   +         R H AR +
Sbjct: 84  --AEPALAAGLKSIREGRLERARQMGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHL 141

Query: 122 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA-- 179
           V++G V++++  F +YL  G P Y +      E AV  I   GG+AV+AHP         
Sbjct: 142 VDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDAVGWIVGAGGMAVIAHPGRYDMGRTL 201

Query: 180 --AIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELG 234
              +I   +  G  G+EV         +  +   AD +GL    GSD+H   G G  ++G
Sbjct: 202 IERLILDFQAAGGQGIEVASGSHSLDDMHKFALHADRHGLYASSGSDFHAP-GEGGRDVG 260

Query: 235 SVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDS 272
             +       D   + RPIW       LE+    P+D+
Sbjct: 261 HTE-------DLPPICRPIW-----RELEARILRPADA 286
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Length = 301 Back     alignment and structure
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Length = 255 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
3o0f_A301 Putative metal-dependent phosphoesterase; structur 100.0
2yb1_A292 Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v 100.0
3e38_A343 Two-domain protein containing predicted PHP-like d 99.83
2yxo_A267 Histidinol phosphatase; metal-dependent, hydrolase 99.59
1m65_A245 Hypothetical protein YCDX; structural genomics, be 99.55
2anu_A255 Hypothetical protein TM0559; predicted metal-depen 99.54
3qy7_A262 Tyrosine-protein phosphatase YWQE; TIM barrel, pol 99.04
2hnh_A 910 DNA polymerase III alpha subunit; DNA replication, 98.99
2w9m_A578 Polymerase X; SAXS, DNA repair, DNA polymerase, DN 98.81
2wje_A247 CPS4B, tyrosine-protein phosphatase CPSB; capsule 98.72
2hpi_A 1220 DNA polymerase III alpha subunit; POL-beta-like nu 98.64
3b0x_A575 DNA polymerase beta family (X family); structural 98.48
3f2b_A 1041 DNA-directed DNA polymerase III alpha chain; DNA p 97.72
3dcp_A283 Histidinol-phosphatase; HISK, histidine biosynthes 97.63
1v77_A212 PH1877P, hypothetical protein PH1877; RNAse P prot 97.37
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Back     alignment and structure
Probab=100.00  E-value=2.9e-55  Score=418.59  Aligned_cols=235  Identities=29%  Similarity=0.457  Sum_probs=214.1

Q ss_pred             ccEEEEecCCCcCCHHHHHHHHHhcCCeEEEEEEEeeeeccCCCCCCCCeEEEEeccCCCCCChHHHHHHHHHHHHHHHH
Q 020004            2 VKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFL   81 (332)
Q Consensus         2 l~~iAITDHDTv~g~~ea~~~a~~~GI~vIpGvEISt~~~~~~~~~g~~vHILgY~id~~~~~~~~l~~~l~~~r~~R~~   81 (332)
                      +++||||||||+.|+.++.+++++.||.+|||+||||.|.      +.++||||||+|+   .++.|+++|+.+|+.|.+
T Consensus        42 l~~iaiTDH~~~~g~~~~~~~~~~~gi~~i~GvEis~~~~------~~~vHiL~~~~d~---~~~~l~~~l~~~~~~R~~  112 (301)
T 3o0f_A           42 LHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVDE------DVSVHMLAFQYDP---SNEHISSMFANTRAARLR  112 (301)
T ss_dssp             CSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEET------TEEEEEEEESCCT---TCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCccccHHHHHHHHHhcCCEEEEEEEEEEEeC------CceEEEEEEcCCC---CCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999985      5789999999985   468999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHhCCC--CCCChHHHHHHHHHcCCCCCHHHHHHHHhhCCCCcccCCCCCCHHHHHHH
Q 020004           82 RAKDMILKLNKLKLPLKWEHVAKIAGKG--VAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQL  159 (332)
Q Consensus        82 r~~~iv~~L~~~G~~i~~e~v~~~ag~~--~~~~r~hia~~Lv~~g~~~~~~~af~~~l~~g~~~yv~~~~~~~eeaI~~  159 (332)
                      |+++|+++|++. ++++||+|+++++.+  ..+||||||++|+++||+++++++|++||++++|+|||..+++++|+|++
T Consensus       113 R~~~i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~~~~~~aF~~~l~~g~~~yV~~~~~~~~eaI~~  191 (301)
T 3o0f_A          113 RTKRMVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPSTHEVIAA  191 (301)
T ss_dssp             HHHHHHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSCSSHHHHHTTTTSTTSTTCCCCCCCBHHHHHHH
T ss_pred             HHHHHHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHcCCCccccCccCCCHHHHHHH
Confidence            999999999999 999999999887542  47999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEEEeCCCCCC-----ChHHHHHHHHHcCccEEEEeCCcC---cHHHHHHHHHHcCCceeecCCCCCCCCCCCc
Q 020004          160 IHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGGHGES  231 (332)
Q Consensus       160 I~~aGGiaVlAHP~~~~-----~~~~li~~l~~~gldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~  231 (332)
                      |+++||++|+|||+++.     ...+++.+|++.|+|||||+|+.+   +.+.+.++|+++||++|||||||++.+  +.
T Consensus       192 I~~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~~~~~~~~~lA~~~gL~~tgGSD~Hg~~~--~~  269 (301)
T 3o0f_A          192 VKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGNPPEQRERLLTIAARHDLLVTGGSDWHGKGK--PN  269 (301)
T ss_dssp             HHHTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTSCHHHHHHHHHHHHHHTCEEEECCCBCGGGS--SC
T ss_pred             HHHCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEcCCCCCCC--CC
Confidence            99999999999997653     346788999999999999999875   456888999999999999999999743  46


Q ss_pred             ccccccCChHHHHHHhc
Q 020004          232 ELGSVKLPVLVLNDFLK  248 (332)
Q Consensus       232 ~lG~~~~p~~~~~~~~~  248 (332)
                      .+|.+.+|...++.|.+
T Consensus       270 ~lG~~~~~~~~~~~l~~  286 (301)
T 3o0f_A          270 GLGENLTDDDTVREILC  286 (301)
T ss_dssp             CTTSSCBCHHHHHHHHH
T ss_pred             cCCCcCCCHHHHHHHHH
Confidence            89999999877776653
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Back     alignment and structure
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A Back     alignment and structure
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Back     alignment and structure
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Back     alignment and structure
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A Back     alignment and structure
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* Back     alignment and structure
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Back     alignment and structure
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Back     alignment and structure
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d2anua1229 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {The 2e-04
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 12/123 (9%)

Query: 114 RLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPW 173
                  ++  G            +      Y   S P+ E+ V+ +     L + AHP 
Sbjct: 80  AWEEYGMILIPGVEITNNTDLYHIVAVDVKEYVDPSLPVEEI-VEKLKEQNALVIAAHPD 138

Query: 174 ALKNPAAIIRKLK-------DVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRG 226
             K     +                  E+   D       +         +  SD+H   
Sbjct: 139 RKKQDEEHLSWYLWANMERFKDTFDAWEIANRD----DLFNSVGVKKYRYVANSDFHELW 194

Query: 227 GHG 229
              
Sbjct: 195 HVY 197

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d2anua1229 Hypothetical protein TM0559 {Thermotoga maritima [ 99.49
d1m65a_244 Hypothetical protein YcdX {Escherichia coli [TaxId 98.9
d1v77a_202 Ribonuclease P protein component 3, Rnp3 {Pyrococc 91.35
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=5.3e-14  Score=123.02  Aligned_cols=78  Identities=18%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             CCHHHHHHHHHHcCCeEEEeCCCCCCChH-----HHH--HHHHHcCccEEEEeCCcCcHHHHHHHHHHcCCceeecCCCC
Q 020004          151 PLAEVAVQLIHRTGGLAVLAHPWALKNPA-----AII--RKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYH  223 (332)
Q Consensus       151 ~~~eeaI~~I~~aGGiaVlAHP~~~~~~~-----~li--~~l~~~gldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~H  223 (332)
                      .+..++++.+++.||++|+|||++.....     ...  .+.....++|||++|+..    +.++|+++++++++|||+|
T Consensus       116 ~~~~~~~~~~~~~g~~~i~aHp~~~~~~~~~~~~~~~~~~~~~~~~~~~iE~~~~~~----~~~~~~~~~l~~v~~SDaH  191 (229)
T d2anua1         116 LPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLSWYLWANMERFKDTFDAWEIANRDD----LFNSVGVKKYRYVANSDFH  191 (229)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCCCTTC-----CCCHHHHSTTTTTTTCSEEEEEETTE----ECHHHHHTTCCEEEECCBC
T ss_pred             cchHHHHHHHHhCCCeEEcccccccccchhhhhhhhHhHHHHHhccCcEEEeccHHH----HHHHHHHcCCCEEeeCCCC
Confidence            36789999999999999999998654211     111  111234699999998753    3567889999999999999


Q ss_pred             CCCCCCCccccccc
Q 020004          224 GRGGHGESELGSVK  237 (332)
Q Consensus       224 g~~~~~~~~lG~~~  237 (332)
                      .+.     .+|...
T Consensus       192 ~~~-----~~G~~~  200 (229)
T d2anua1         192 ELW-----HVYSWK  200 (229)
T ss_dssp             SGG-----GGSSEE
T ss_pred             Ccc-----ccCCeE
Confidence            864     477653
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure