Citrus Sinensis ID: 020007


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
cccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccEEEEEHHHcHHHHHHHHHHHHHHHcccHHHccccccccccccccEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mseassssthrgSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIIlsgeeggicpaedgidsrlCFYDVLADhyvrmpesGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEValeparlnkipvqfpvfpnaflvggsadFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTClysftspggpmyptraVRHAAWDALDflfpvgqyprHVISLFFRLlypwcwpsscwNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
mseassssthrgsAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGeeggicpaedgIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFsswekvraekns
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
***************************************LLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEK*******
******************LTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSW**VR*****
***********GSAYLNALTQEIEKKL********QRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWE********
************SAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVR*****
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MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
225435022357 PREDICTED: uncharacterized protein LOC10 0.987 0.918 0.75 1e-151
224054823364 predicted protein [Populus trichocarpa] 0.996 0.909 0.735 1e-146
224104479359 predicted protein [Populus trichocarpa] 0.984 0.910 0.726 1e-144
363807874358 uncharacterized protein LOC100815374 [Gl 0.990 0.918 0.696 1e-141
357472745358 hypothetical protein MTR_4g063570 [Medic 0.990 0.918 0.688 1e-140
21537130359 unknown [Arabidopsis thaliana] 0.945 0.874 0.710 1e-138
18424303359 uncharacterized protein [Arabidopsis tha 0.945 0.874 0.710 1e-138
297796947359 hypothetical protein ARALYDRAFT_496133 [ 0.945 0.874 0.707 1e-138
449462625358 PREDICTED: uncharacterized protein LOC10 0.984 0.913 0.676 1e-136
356542469358 PREDICTED: uncharacterized protein LOC10 0.990 0.918 0.685 1e-135
>gi|225435022|ref|XP_002284193.1| PREDICTED: uncharacterized protein LOC100260346 [Vitis vinifera] gi|297746114|emb|CBI16170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/356 (75%), Positives = 295/356 (82%), Gaps = 28/356 (7%)

Query: 5   SSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGE 64
           S +ST + SAYL ALTQEIEKKL RALAS SQRRNLL++LFADIALEVDDRARD+ILSGE
Sbjct: 2   SQASTAQSSAYLTALTQEIEKKLLRALASQSQRRNLLEQLFADIALEVDDRARDMILSGE 61

Query: 65  EGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWI 124
           E  I P E+  +S+LCFYDVLADHYVR+PE+G+ ILDLIVQLWSQLF SHIFALLFHKW+
Sbjct: 62  EDVISPVEERSESKLCFYDVLADHYVRVPENGKSILDLIVQLWSQLFASHIFALLFHKWL 121

Query: 125 FEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPV 184
           FEVQL N EVL RYSSALVQGATNVFWIDIQTN+  FQSLFRYLLEEVAL P RLNKI  
Sbjct: 122 FEVQLENSEVLFRYSSALVQGATNVFWIDIQTNTMRFQSLFRYLLEEVALVPTRLNKIAP 181

Query: 185 Q----------------------------FPVFPNAFLVGGSADFFVIEVADQLQKLKVE 216
           Q                            FP+FPN+FL GG AD FVIE+ADQLQKLKVE
Sbjct: 182 QAQRDLYLLLSRFIFFYNFVDKLESFLKEFPIFPNSFLAGGPADIFVIELADQLQKLKVE 241

Query: 217 PVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPV 276
           PVL+HYLSQIKVLQG+ELRMTTSTRLK CLYSFTSPGGPMYPTR VRHAAW+ALDFLFPV
Sbjct: 242 PVLVHYLSQIKVLQGLELRMTTSTRLKACLYSFTSPGGPMYPTRIVRHAAWEALDFLFPV 301

Query: 277 GQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS 332
           G+YPRH+ISLFFRLLYPW WPSSCWNFIMS +KAVL++LLR++FSS EK+R  KN+
Sbjct: 302 GRYPRHLISLFFRLLYPWYWPSSCWNFIMSCIKAVLYSLLRLIFSSLEKLRRPKNA 357




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054823|ref|XP_002298370.1| predicted protein [Populus trichocarpa] gi|222845628|gb|EEE83175.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104479|ref|XP_002313449.1| predicted protein [Populus trichocarpa] gi|222849857|gb|EEE87404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807874|ref|NP_001241933.1| uncharacterized protein LOC100815374 [Glycine max] gi|255645052|gb|ACU23025.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357472745|ref|XP_003606657.1| hypothetical protein MTR_4g063570 [Medicago truncatula] gi|355507712|gb|AES88854.1| hypothetical protein MTR_4g063570 [Medicago truncatula] Back     alignment and taxonomy information
>gi|21537130|gb|AAM61471.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18424303|ref|NP_568917.1| uncharacterized protein [Arabidopsis thaliana] gi|332009876|gb|AED97259.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796947|ref|XP_002866358.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata] gi|297312193|gb|EFH42617.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449462625|ref|XP_004149041.1| PREDICTED: uncharacterized protein LOC101221721 [Cucumis sativus] gi|449512817|ref|XP_004164148.1| PREDICTED: uncharacterized protein LOC101231975 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356542469|ref|XP_003539689.1| PREDICTED: uncharacterized protein LOC100775283 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2168158359 AT5G59960 "AT5G59960" [Arabido 0.542 0.501 0.738 1.2e-65
TAIR|locus:2168158 AT5G59960 "AT5G59960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 133/180 (73%), Positives = 152/180 (84%)

Query:     6 SSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEE 65
             SSS  R SAYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVDDRA+D+ILS EE
Sbjct:     8 SSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEE 67

Query:    66 GGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIF 125
               I   E   D  LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+F
Sbjct:    68 DLITSDEADADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLF 127

Query:   126 EVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQ 185
             EV+L+N E+LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE  RL KIP+Q
Sbjct:   128 EVELDNQEILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQ 187


GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00024368001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (357 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00