Citrus Sinensis ID: 020031

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MLLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSEPQEKKDEDKVSKEEEEKK
cccccccccccEEEHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccHHHHcc
cccHccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHcccEEccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHccccHHHHHHHHHHHcccccccccccccHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHcccHccccccccccccHHccc
mlldagleiggelnLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVnfgeddegnTEKLEALLAAVNnndsshlvhvppgpnalsdvllstpiftgdgeggsGFAAAAAAAAAsgasgyefgvdpnldPELALALRVSMEEERARQEAAAKRAAEEAAKKekqgeqqsssqdvtmtdqdsvpaseaddkkkttkHDEGLLQEAIAmsstpsypsgrdtnmsevaedDPELALALQLSmqdgtkdapshsdmsqLLADQAFVSSILaslpgvdpedpsvKDVLTSmqnqsepqekkdedkvsKEEEEKK
MLLDAGLEIGGELNLAAGIQVAQLALKHRqnkkqqqriivfvgspikheKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEaakkekqgeqqsssqdvtmtdqdsvpaseaddkkkttkhDEGLLQeaiamsstpsypsGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTsmqnqsepqekkdedkvskeeeekk
MLLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEggsgfaaaaaaaaasgasgYEFGVDPNLDPELALALRVSMeeerarqeaaakraaeeaakkekqgeqqSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSEPQekkdedkvskeeeekk
*****GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE********LEALLAAV*******LVHV*****ALSDVLLSTPIFTGDGE**SGFAAAAAAA******GYEFGV*****************************************************************************************************************************************************************************************
*****G*EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFT*********************SGYEFGVDPNLDPELALALRV***********************************************************************************************************************DQAFVSSILASLPGVDPEDP********************************
MLLDAGLEIGGELNLAAGIQVAQLA**********QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGF*************GYEFGVDPNLDPELALALRVS*********************************************************DEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSM************MSQLLADQAFVSSILASLPGVDPEDPSVKDVLT*************************
****AGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAK**************************************************************************************************DMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSM***********************
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MLLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVKDVLTSMQNQSEPQEKKDEDKVSKEEEEKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
P55034386 26S proteasome non-ATPase yes no 0.921 0.792 0.603 1e-90
P55035396 26S proteasome non-ATPase yes no 0.840 0.704 0.391 5e-47
O35226376 26S proteasome non-ATPase yes no 0.804 0.710 0.386 6e-40
Q58DA0382 26S proteasome non-ATPase yes no 0.792 0.688 0.366 6e-39
P55036377 26S proteasome non-ATPase yes no 0.792 0.697 0.366 6e-39
O94444243 26S proteasome regulatory yes no 0.493 0.674 0.469 1e-37
Q553E0349 26S proteasome non-ATPase yes no 0.704 0.670 0.351 6e-36
A2A3N6862 Putative PIP5K1A and PSMD no no 0.792 0.305 0.350 6e-35
O17453420 26S proteasome non-ATPase N/A no 0.795 0.628 0.312 8e-34
P38886268 26S proteasome regulatory yes no 0.475 0.589 0.481 2e-32
>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  333 bits (854), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/330 (60%), Positives = 252/330 (76%), Gaps = 24/330 (7%)

Query: 6   GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 65
           GL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV
Sbjct: 78  GLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSV 137

Query: 66  ALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEG 124
           +LDIVNFGE DDE   +KLEALL AVNNND SH+VHVP G NALSDVLLSTP+FTGD EG
Sbjct: 138 SLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFTGD-EG 196

Query: 125 GSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKK 184
            SG+ +AAAAAAA+G   ++FGVDPN+DPELALALRVSMEEERARQEAAAK+AA+EA +K
Sbjct: 197 ASGYVSAAAAAAAAGGD-FDFGVDPNIDPELALALRVSMEEERARQEAAAKKAADEAGQK 255

Query: 185 EKQGEQQSSSQDVT--MTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDT 242
           +K G+  S+SQ+     TD+++ P  E          D  LL +AIAMS         D 
Sbjct: 256 DKDGDTASASQETVARTTDKNAEPMDE----------DSALLDQAIAMSVG-------DV 298

Query: 243 NMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSV 302
           NMSE A++D +LALALQ+SM  G + + +    + LL +QAF+SS+L+SLPGVDP DP+V
Sbjct: 299 NMSEAADEDQDLALALQMSMS-GEESSEATGAGNNLLGNQAFISSVLSSLPGVDPNDPAV 357

Query: 303 KDVLTSMQNQSEPQEKKDEDKVSKEEEEKK 332
           K++L S+ ++S+  E ++E    K E+EKK
Sbjct: 358 KELLASLPDESKRTE-EEESSSKKGEDEKK 386
Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins. Plays a role in the growth and development via the proteasome-dependent degradation of the ABA-signaling protein ABI5/DPBF1.
Arabidopsis thaliana (taxid: 3702)
>sp|P55035|PSMD4_DROME 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2 Back     alignment and function description
>sp|O35226|PSMD4_MOUSE 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1 Back     alignment and function description
>sp|Q58DA0|PSMD4_BOVIN 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1 Back     alignment and function description
>sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1 Back     alignment and function description
>sp|O94444|RPN10_SCHPO 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1 Back     alignment and function description
>sp|Q553E0|PSMD4_DICDI 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1 Back     alignment and function description
>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1 Back     alignment and function description
>sp|O17453|PSMD4_SCHMA 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2 Back     alignment and function description
>sp|P38886|RPN10_YEAST 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
356502795397 PREDICTED: 26S proteasome non-ATPase reg 0.957 0.801 0.771 1e-123
356559272398 PREDICTED: 26S proteasome non-ATPase reg 0.957 0.798 0.744 1e-123
356559274390 PREDICTED: 26S proteasome non-ATPase reg 0.936 0.797 0.743 1e-122
356502793405 PREDICTED: 26S proteasome non-ATPase reg 0.978 0.802 0.775 1e-122
356496629405 PREDICTED: 26S proteasome non-ATPase reg 0.978 0.802 0.784 1e-119
225431100404 PREDICTED: 26S proteasome non-ATPase reg 0.978 0.804 0.752 1e-117
363807696405 uncharacterized protein LOC100803975 [Gl 0.978 0.802 0.765 1e-116
255580000403 26S proteasome non-atpase regulatory sub 0.972 0.801 0.776 1e-114
388490844403 unknown [Lotus japonicus] 0.969 0.799 0.765 1e-114
449434144403 PREDICTED: 26S proteasome non-ATPase reg 0.966 0.796 0.745 1e-114
>gi|356502795|ref|XP_003520201.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like isoform 2 [Glycine max] Back     alignment and taxonomy information
 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/328 (77%), Positives = 286/328 (87%), Gaps = 10/328 (3%)

Query: 6   GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 65
           GLEIGGE+NLAAGIQVAQLALKHRQNKKQQQRIIVF G P+KHEKK+LEMIGRKLKKNSV
Sbjct: 78  GLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVKHEKKMLEMIGRKLKKNSV 137

Query: 66  ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGG 125
           ALDIVNFGE+DEG TEKLEALL+AVNNND+SH+VHVP GPNALSDVL+STPIFTGDGEGG
Sbjct: 138 ALDIVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGG 197

Query: 126 SGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKE 185
           SGFAAAAAAAAA G SG+EFGVDPNLDPELALALRVSMEEERARQEAAAK+A+E+A+K+E
Sbjct: 198 SGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKASEDASKQE 257

Query: 186 KQGEQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMS-STPSYPSG-RDTN 243
           K GEQQ+S QD TMT+  S  ASE DD       +  LLQ+A+AMS   P+     RDT+
Sbjct: 258 KDGEQQASPQDTTMTEGASAAASEQDD-------ENALLQQALAMSMDDPTINHEVRDTD 310

Query: 244 MSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVK 303
           MSE A +DPELALALQLS++D +KD+ S SD+S+LLADQ+FVSSILASLPGVDP DPSVK
Sbjct: 311 MSEAAAEDPELALALQLSVEDSSKDSASQSDVSKLLADQSFVSSILASLPGVDPNDPSVK 370

Query: 304 DVLTSMQNQSEPQEKKDEDKVSKEEEEK 331
           D+L SMQNQSEPQ+ K+EDK   EEE+K
Sbjct: 371 DLLASMQNQSEPQQ-KNEDKPPNEEEKK 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356559272|ref|XP_003547924.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356559274|ref|XP_003547925.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356502793|ref|XP_003520200.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356496629|ref|XP_003517168.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max] Back     alignment and taxonomy information
>gi|225431100|ref|XP_002264558.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 [Vitis vinifera] gi|297734994|emb|CBI17356.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807696|ref|NP_001242422.1| uncharacterized protein LOC100803975 [Glycine max] gi|255641336|gb|ACU20945.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255580000|ref|XP_002530834.1| 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis] gi|223529598|gb|EEF31547.1| 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388490844|gb|AFK33488.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449434144|ref|XP_004134856.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Cucumis sativus] gi|449491330|ref|XP_004158863.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2121269386 RPN10 "regulatory particle non 0.716 0.616 0.534 1.9e-60
UNIPROTKB|F1PRW0377 PSMD4 "Uncharacterized protein 0.424 0.374 0.496 1.6e-45
ZFIN|ZDB-GENE-050417-96372 psmd4b "proteasome (prosome, m 0.424 0.379 0.490 2.6e-45
UNIPROTKB|Q58DA0382 PSMD4 "26S proteasome non-ATPa 0.424 0.369 0.496 3.3e-45
UNIPROTKB|P55036377 PSMD4 "26S proteasome non-ATPa 0.424 0.374 0.496 3.3e-45
UNIPROTKB|Q32YV9377 PSMD4 "Uncharacterized protein 0.424 0.374 0.496 3.3e-45
MGI|MGI:1201670376 Psmd4 "proteasome (prosome, ma 0.424 0.375 0.496 2.3e-44
RGD|621109377 Psmd4 "proteasome (prosome, ma 0.424 0.374 0.496 2.3e-44
UNIPROTKB|Q5VWC4380 PSMD4 "26S proteasome non-ATPa 0.424 0.371 0.496 2.9e-44
DICTYBASE|DDB_G0275775349 psmD4 "ubiquitin interacting m 0.349 0.332 0.542 2e-40
TAIR|locus:2121269 RPN10 "regulatory particle non-ATPase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 139/260 (53%), Positives = 166/260 (63%)

Query:     6 GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 65
             GL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV
Sbjct:    78 GLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSV 137

Query:    66 ALDIVNFGEDD-EGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEX 124
             +LDIVNFGEDD E   +KLEALL AVNNND SH+VHVP G NALSDVLLSTP+FTGD   
Sbjct:   138 SLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFTGD--E 195

Query:   125 XXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSMXXXXXXXXXXXXXXXXXXXXX 184
                               ++FGVDPN+DPELALALRVSM                     
Sbjct:   196 GASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSMEEERARQEAAAKKAADEAGQK 255

Query:   185 XXXXXXXSSSQDVTM--TDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDT 242
                    S+SQ+     TD+++ P  E          D  LL +AIAMS       G D 
Sbjct:   256 DKDGDTASASQETVARTTDKNAEPMDE----------DSALLDQAIAMSV------G-DV 298

Query:   243 NMSEVAEDDPELALALQLSM 262
             NMSE A++D +LALALQ+SM
Sbjct:   299 NMSEAADEDQDLALALQMSM 318
GO:0005737 "cytoplasm" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISS;IDA
GO:0000502 "proteasome complex" evidence=IDA;TAS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS
GO:0005634 "nucleus" evidence=TAS
GO:0030163 "protein catabolic process" evidence=TAS
GO:0006974 "response to DNA damage stimulus" evidence=IMP
GO:0009555 "pollen development" evidence=IMP
GO:0009651 "response to salt stress" evidence=RCA;IMP
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IEP;RCA;IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0009744 "response to sucrose stimulus" evidence=IMP
GO:0010029 "regulation of seed germination" evidence=IMP
GO:0010150 "leaf senescence" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
GO:0048455 "stamen formation" evidence=IMP
GO:0048528 "post-embryonic root development" evidence=IMP
GO:0048767 "root hair elongation" evidence=RCA;IMP
GO:0016020 "membrane" evidence=IDA
GO:0009408 "response to heat" evidence=IMP
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA;IMP
GO:0043248 "proteasome assembly" evidence=RCA;IMP
GO:0051788 "response to misfolded protein" evidence=RCA;IMP
GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0001653 "peptide receptor activity" evidence=IDA
UNIPROTKB|F1PRW0 PSMD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-96 psmd4b "proteasome (prosome, macropain) 26S subunit, non-ATPase, 4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DA0 PSMD4 "26S proteasome non-ATPase regulatory subunit 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55036 PSMD4 "26S proteasome non-ATPase regulatory subunit 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q32YV9 PSMD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1201670 Psmd4 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621109 Psmd4 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VWC4 PSMD4 "26S proteasome non-ATPase regulatory subunit 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275775 psmD4 "ubiquitin interacting motif (UIM) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P55034PSMD4_ARATHNo assigned EC number0.60300.92160.7927yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036762001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (440 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015420001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (191 aa)
   •••• 0.987
GSVIVG00024499001
RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (245 aa)
   •••• 0.983
GSVIVG00014791001
SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (309 aa)
   •••• 0.982
GSVIVG00010470001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (386 aa)
   •••• 0.978
GSVIVG00006696001
SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (267 aa)
   •••• 0.975
GSVIVG00035048001
RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (272 aa)
   •••• 0.966
GSVIVG00030725001
RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (250 aa)
   •••• 0.956
GSVIVG00015634001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (365 aa)
   •••• 0.952
GSVIVG00023752001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_31, whole genome shotg [...] (205 aa)
   •••• 0.944
GSVIVG00018640001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (629 aa)
   •••• 0.933

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
cd01452187 cd01452, VWA_26S_proteasome_subunit, 26S proteasom 1e-52
COG5148243 COG5148, RPN10, 26S proteasome regulatory complex, 8e-43
smart00327175 smart00327, VWA, von Willebrand factor (vWF) type 0.003
>gnl|CDD|238729 cd01452, VWA_26S_proteasome_subunit, 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information 
 Score =  171 bits (435), Expect = 1e-52
 Identities = 66/111 (59%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 6   GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 65
            ++  G+ N   GIQ+AQLALKHRQNK Q+QRI+ FVGSPI+ ++K L  + ++LKKN+V
Sbjct: 78  DVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNV 137

Query: 66  ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTP 116
           ++DI+NFGE D+ NTEKL A + AVN  D SHLV VPPG N LSD LLS+P
Sbjct: 138 SVDIINFGEIDD-NTEKLTAFIDAVNGKDGSHLVSVPPGENLLSDALLSSP 187

It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association. Length = 187
>gnl|CDD|227477 COG5148, RPN10, 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
KOG2884259 consensus 26S proteasome regulatory complex, subun 100.0
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 100.0
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 100.0
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 98.98
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.24
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 97.26
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 96.81
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 96.72
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 96.65
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 95.79
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 95.67
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 95.45
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 95.42
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 95.29
PF0280918 UIM: Ubiquitin interaction motif; InterPro: IPR003 94.97
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 94.62
PF13768155 VWA_3: von Willebrand factor type A domain 94.44
smart0072626 UIM Ubiquitin-interacting motif. Present in protea 94.23
PF0280918 UIM: Ubiquitin interaction motif; InterPro: IPR003 94.11
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 94.07
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 93.9
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 93.87
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 93.63
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 93.26
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 93.16
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 93.01
cd03811353 GT1_WabH_like This family is most closely related 92.87
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 92.82
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 92.46
smart0072626 UIM Ubiquitin-interacting motif. Present in protea 92.45
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 91.43
TIGR00627279 tfb4 transcription factor tfb4. This family is bas 91.39
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 91.34
cd03819355 GT1_WavL_like This family is most closely related 91.32
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 91.08
PF03358152 FMN_red: NADPH-dependent FMN reductase; InterPro: 90.15
PF00092178 VWA: von Willebrand factor type A domain; InterPro 90.04
PLN00162 761 transport protein sec23; Provisional 89.63
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 89.27
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 89.01
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 88.99
cd04951360 GT1_WbdM_like This family is most closely related 88.82
PF03853169 YjeF_N: YjeF-related protein N-terminus; InterPro: 88.79
cd0492266 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona 87.72
cd03817374 GT1_UGDG_like This family is most closely related 87.71
cd03821375 GT1_Bme6_like This family is most closely related 87.65
cd03809365 GT1_mtfB_like This family is most closely related 87.53
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 87.18
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 87.06
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 86.67
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 86.13
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 86.05
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 85.8
cd03801374 GT1_YqgM_like This family is most closely related 85.56
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 85.15
cd03820348 GT1_amsD_like This family is most closely related 85.07
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 84.95
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 84.64
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 83.74
cd04962371 GT1_like_5 This family is most closely related to 83.71
cd0492466 ACT_AK-Arch_2 ACT domains of a monofunctional aspa 83.36
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 82.6
KOG1984 1007 consensus Vesicle coat complex COPII, subunit SFB3 82.6
PTZ00395 1560 Sec24-related protein; Provisional 80.27
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-69  Score=496.95  Aligned_cols=168  Identities=59%  Similarity=0.904  Sum_probs=155.4

Q ss_pred             CCCCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcH
Q 020031            1 MLLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT   80 (332)
Q Consensus         1 ~~~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~   80 (332)
                      |++||.|.++|+|+|.+|||||||||||||||+||||||+||||||.+++++|+++||+||||||+||||+|||.. +|+
T Consensus        73 ls~lh~i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~-~~~  151 (259)
T KOG2884|consen   73 LSKLHGIQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAE-NNT  151 (259)
T ss_pred             HHHhcCCCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecccc-ccH
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999 889


Q ss_pred             HHHHHHHHHHhc-CCCceEEEeCCCCchhhHHhhhcCcccCCCCCCCchhHhHHhhhcCCCCCCcccCCCCCCHHHHHHH
Q 020031           81 EKLEALLAAVNN-NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALAL  159 (332)
Q Consensus        81 ~kL~~fi~~vN~-~~~Shlv~VP~G~~~LsD~l~sSpI~~ge~~~g~~~~~~~~~~~~~~~~~fefGvDP~~DPELAmAL  159 (332)
                      ++|..||+++|+ +++||||+||||| +|||+|++||||.||+ ||++      ++.++.|..|+|||||++||||||||
T Consensus       152 e~l~~fida~N~~~~gshlv~Vppg~-~L~d~l~ssPii~ge~-g~a~------~~~~a~g~~f~fgvdp~~DPELAlAL  223 (259)
T KOG2884|consen  152 EKLFEFIDALNGKGDGSHLVSVPPGP-LLSDALLSSPIIQGED-GGAA------AGLGANGMDFEFGVDPEDDPELALAL  223 (259)
T ss_pred             HHHHHHHHHhcCCCCCceEEEeCCCc-cHHHHhhcCceeccCc-cccc------ccccccccccccCCCcccCHHHHHHH
Confidence            999999999999 7899999999999 8999999999999987 2222      22344556899999999999999999


Q ss_pred             HhcHHHHHHHHHHHHHHH
Q 020031          160 RVSMEEERARQEAAAKRA  177 (332)
Q Consensus       160 R~SmEEEr~RQe~~~~~~  177 (332)
                      |+||||||+|||++++++
T Consensus       224 RlSMEEer~rQe~aa~~~  241 (259)
T KOG2884|consen  224 RLSMEEERARQERAAQKA  241 (259)
T ss_pred             HhhHHHHHHHHHHHhhhc
Confidence            999999999999777654

>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,] Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>smart00726 UIM Ubiquitin-interacting motif Back     alignment and domain information
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,] Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>smart00726 UIM Ubiquitin-interacting motif Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>TIGR00627 tfb4 transcription factor tfb4 Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes Back     alignment and domain information
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
4b4t_W268 Near-Atomic Resolution Structural Model Of The Yeas 3e-32
2x5n_A192 Crystal Structure Of The Sprpn10 Vwa Domain Length 1e-23
2kde_A111 Nmr Structure Of Major S5a (196-306):k48 Linked Diu 2e-04
1yx4_A132 Structure Of S5a Bound To Monoubiquitin Provides A 2e-04
>pdb|4B4T|W Chain W, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 268 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 104/164 (63%), Gaps = 6/164 (3%)
Query: 5   AGL---EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLK 61
           AGL   +I G+L++A  +Q+AQL LKHRQNK Q QRI+ FV SPI   +  L  + + LK
Sbjct: 74  AGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLK 133
Query: 62  KNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPIFT 119
           KN+VA+DI+NFGE  E NTE L+  +AAVNN   ++SHL+ V PGP  L + + S+PI  
Sbjct: 134 KNNVAVDIINFGE-IEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIIL 192
Query: 120 GDGEXXXXXXXXXXXXXXXXXXXYEFGVDPNLDPELALALRVSM 163
            +G                     +FGVDP++DPELA+ALR+SM
Sbjct: 193 EEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain Length = 192 Back     alignment and structure
>pdb|2KDE|A Chain A, Nmr Structure Of Major S5a (196-306):k48 Linked Diubiquitin Species Length = 111 Back     alignment and structure
>pdb|1YX4|A Chain A, Structure Of S5a Bound To Monoubiquitin Provides A Model For Polyubiquitin Recognition Length = 132 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 8e-38
1yx4_A132 26S proteasome non-ATPase regulatory subunit 4; po 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Length = 192 Back     alignment and structure
 Score =  132 bits (334), Expect = 8e-38
 Identities = 54/117 (46%), Positives = 77/117 (65%), Gaps = 2/117 (1%)

Query: 6   GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 65
            L + G      GIQ+AQLALKHR+NK Q+QRI+ FVGSPI  ++K L  + +++KKN+V
Sbjct: 77  DLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNV 136

Query: 66  ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDG 122
           A+DI++ GE    N   L+  + A N++DS HLV +PP P  LSD++  +PI  G  
Sbjct: 137 AIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPIGQGVV 191
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A Length = 132 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 100.0
1yx4_A132 26S proteasome non-ATPase regulatory subunit 4; po 99.95
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 99.93
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 98.23
2klz_A52 Ataxin-3; UIM, ubiquitin-binding, hydrolase, neuro 97.49
1p9c_A45 26S proteasome non-ATPase regulatory subunit 4; al 97.12
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 96.45
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 96.37
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 96.35
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 96.17
3ibs_A218 Conserved hypothetical protein BATB; structural ge 95.93
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 94.9
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 94.7
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 94.53
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 94.47
2b2x_A223 Integrin alpha-1; computational design, antibody-a 93.68
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 93.45
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 92.92
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 92.92
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 92.74
1q0v_A81 Hydrophilic protein; has cysteine rich putative zi 92.41
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 92.39
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 92.32
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 92.31
1q0v_A81 Hydrophilic protein; has cysteine rich putative zi 92.3
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 92.12
1yx4_A132 26S proteasome non-ATPase regulatory subunit 4; po 92.04
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 91.68
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 91.65
3efo_B 770 SEC24 related gene family, member D; copii, coat p 91.47
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 90.28
3a1q_C45 Ubiquitin interaction motif-containing protein 1; 88.27
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 88.18
2rr9_C46 Putative uncharacterized protein UIMC1; Lys63-link 86.91
2rr9_C46 Putative uncharacterized protein UIMC1; Lys63-link 86.06
3a1q_C45 Ubiquitin interaction motif-containing protein 1; 84.92
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 84.22
3hly_A161 Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein 83.52
4fx5_A464 VON willebrand factor type A; structural genomics, 83.37
3fni_A159 Putative diflavin flavoprotein A 3; alpha-beta pro 83.33
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 83.33
2klz_A52 Ataxin-3; UIM, ubiquitin-binding, hydrolase, neuro 82.94
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 82.91
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 81.69
1f4p_A147 Flavodoxin; electron transport, flavoprotein, FMN, 80.2
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.4e-60  Score=442.03  Aligned_cols=179  Identities=45%  Similarity=0.709  Sum_probs=116.9

Q ss_pred             CCCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHH
Q 020031            2 LLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE   81 (332)
Q Consensus         2 ~~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~   81 (332)
                      .+||.++++|.++|.+||++|+++||||++|++++|||+|+|||+..++++|++|+|+|||+||.||||.||+.+ .|.+
T Consensus        74 ~aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~-~n~~  152 (268)
T 4b4t_W           74 AGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE-QNTE  152 (268)
T ss_dssp             HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCC-SSCC
T ss_pred             HHhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCc-cchH
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999988 8999


Q ss_pred             HHHHHHHHHhc--CCCceEEEeCCCCchhhHHhhhcCcccCCCCCCCchhHhHHhhhcCCCCCCcccCCCCCCHHHHHHH
Q 020031           82 KLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALAL  159 (332)
Q Consensus        82 kL~~fi~~vN~--~~~Shlv~VP~G~~~LsD~l~sSpI~~ge~~~g~~~~~~~~~~~~~~~~~fefGvDP~~DPELAmAL  159 (332)
                      ||++|++++|+  +++||||+|||||++|||+|+|||||.|+|.+++++.++++|++++++++|||||||++||||||||
T Consensus       153 kLe~l~~~~Ng~~~~~s~~v~v~~g~~~lsd~l~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~dpela~al  232 (268)
T 4b4t_W          153 LLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMAL  232 (268)
T ss_dssp             HHHHHHHHHCSSTTTSCEEEEECCCSSCHHHHHHTSTTSCCCCC------------------------------------
T ss_pred             HHHHHHHHhcCCCCCceeEEEeCCCCccHHHHHhcCCccccCCccccccccccccccccCCcccccCCCCCCCHHHHHHH
Confidence            99999999998  5799999999999999999999999999885433322222334455667899999999999999999


Q ss_pred             HhcHHHHHHHHHHHHHHHHHHH
Q 020031          160 RVSMEEERARQEAAAKRAAEEA  181 (332)
Q Consensus       160 R~SmEEEr~RQe~~~~~~~~~~  181 (332)
                      ||||||||+|||++++++.+.+
T Consensus       233 r~s~eee~~rq~~~~~~~~~~~  254 (268)
T 4b4t_W          233 RLSMEEEQQRQERLRQQQQQQD  254 (268)
T ss_dssp             ----------------------
T ss_pred             HHhHHHHHHHHHHHhhcccccc
Confidence            9999999999999987765443
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens} Back     alignment and structure
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus} Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens} Back     alignment and structure
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens} Back     alignment and structure
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus} Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens} Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d1jeyb2236 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain 1e-04
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 27/71 (38%)

Query: 11  GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70
            +   A  + +  +  +    K +++ I +F     +  K  L++I   LKK  ++L   
Sbjct: 100 ADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFF 159

Query: 71  NFGEDDEGNTE 81
                 + +  
Sbjct: 160 LPFSLGKEDGS 170

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 96.98
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 96.73
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 96.32
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 95.89
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 94.79
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 94.68
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 94.38
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 93.54
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 88.59
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 87.67
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 87.0
d1rtta_174 Hypothetical protein PA1204 {Pseudomonas aeruginos 84.83
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 81.89
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 80.77
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00049  Score=57.00  Aligned_cols=68  Identities=18%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             cCccccHHHHHHHHHHHhhhc--CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031            9 IGGELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD   76 (332)
Q Consensus         9 i~G~~~~~~gIqiA~LALKHR--qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~   76 (332)
                      .++..++.++|.+|.=.+++|  .++..++|||+|--..-..+...+.+++++||+.+|.|.+|.+|...
T Consensus        96 ~~~~~~~~~al~~a~~~~~~~~~~~~~~~r~IiL~TDG~~~~~~~~~~~~a~~l~~~~I~i~~ig~g~~~  165 (236)
T d1jeyb2          96 GSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLG  165 (236)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred             cccccchhHHHHHHHHHHHHhhhcccccccEEEEEecCCCCcChHHHHHHHHHHHHcCCEEEEEecCCcC
Confidence            345688999999997656544  45556788999986654445567899999999999999999998665
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure