Citrus Sinensis ID: 020059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITEC
Secondary Structure (PSIPRED)
cccccccccccEEccHHHHHHHHccccEEEHHHHHcHHccccccEEEEEcccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccEEEEEccccHHHcccccHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHccccEEEEccccccccccccccccEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccEEEEEcccEEEEcccccccHHHHHHHHHccccccEEEEEccccccccccccccHHHHHHHccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHcccEEEccccHHHHHHccccEEEHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHccHHHccccEEEEEEccHHHHHHcccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHcccEEEEEcccccccccEEEEccEEEEEEcccEEEEEHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHcccccEEEEEccccccccccccccHHHHHHHHcccEEEEEcc
Coil and Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAfvggnlgnplseaafhcialpsskpkfQVAVVEVSSyqmeipnkyfcpTVSVVlnltpdhlerhktmknyaltkCHLFShmvntklgllpfgnqHLNEAIKghrfnlawigafpgvkidteaktasfevpavgvvsQLQLHNmkvmgrhnyHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqivhrdiqgvtwvddskatnlEATCTglmdlkghkcVILLGGqakvlngqesngfeklieplnhhrcvitec
Flexible Loop (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFeklieplnhhrcvitec
Low Complexity Region (SEG)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITEC
Disordered region (IsUnstruct)
*WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI***
Disordered Region (DISOPRED)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITEC
Disordered Region (DISEMBL)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITEC
Disordered Region (DISPRO)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITEC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q6AJ52	456	UDP-N-acetylmuramoylalani	yes	no	0.812	0.589	0.340	3e-29
B8FBS0	450	UDP-N-acetylmuramoylalani	yes	no	0.803	0.591	0.332	4e-29
Q2IG29	462	UDP-N-acetylmuramoylalani	yes	no	0.812	0.582	0.328	8e-29
A8ZXW5	459	UDP-N-acetylmuramoylalani	yes	no	0.791	0.570	0.335	3e-27
Q7V0A5	473	UDP-N-acetylmuramoylalani	yes	no	0.800	0.560	0.302	4e-26
Q5X1S4	447	UDP-N-acetylmuramoylalani	yes	no	0.794	0.588	0.282	8e-26
Q1IKG8	453	UDP-N-acetylmuramoylalani	yes	no	0.803	0.587	0.301	8e-26
Q5ZSA3	447	UDP-N-acetylmuramoylalani	yes	no	0.794	0.588	0.279	3e-25
Q5WTI5	447	UDP-N-acetylmuramoylalani	yes	no	0.794	0.588	0.279	4e-25
Q2RK81	455	UDP-N-acetylmuramoylalani	yes	no	0.830	0.604	0.335	4e-25

>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 142/288 (49%), Gaps = 19/288 (6%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA L ++G +V+ EL  AA V+ R   ++A+TGTNGK+TV + VG +L   G   FVGGN
Sbjct: 91  LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G PL       + L SS  +  V V+EVSS+Q+E+    F P ++++LNL+PDHL+RH 
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            +  Y   K HLF     T + ++  G+  L     G      ++  F     D      
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258

Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
            FE    G      L +  +  R  + NAA AA     L     D+E     I       
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           HRM+ V   I GV + +DSKATN  A  + L  L   + +++ GG+ K
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDK 360

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).
Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 9

>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD PE=3 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L    + G  V+ E++ A++ I     I+AVTGTNGK+TV + +G+M+   GI AFVGGN
Sbjct: 85  LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +GNPL       +     + K QV V E+SS+Q++   + F P V+++ N+T DH++R+ 
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            M+ YA +K  +F +       +L  G    + A+ G      W   F G + + EA  A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250

Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
                A+   +  Q H       M + G HN  NAA AAL+         VE +   I+ 
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAK 304
            +  PHR++ V R++  V + DDSKATN++A    L  L+G    +  ++GG+ K
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHLIMGGRDK 358

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1

 Score =  127 bits (320), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 29/298 (9%)

Query: 22  LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
           +Q+ +R    V  E++ AA+ +   + I+ +TGTNGKST     G +L  H     FVGG
Sbjct: 87  IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143

Query: 77  NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
           NLG PLSE         S +P    AVVE+SS+Q+E   + F   V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKID-- 191
             +  YA  K  LF+      + +    +     +  A +G      +    P    D  
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255

Query: 192 ---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
                  TA +  P      + QLHN  + GRHN  NA  A L      +GV  EA+ + 
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCA--RLMGVPGEAVQAG 313

Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAK 304
           ++      HR+++V  + +GV WV+DSKATN+++T  GL        + V+++GG+ K
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGK 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 147/289 (50%), Gaps = 27/289 (9%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  VM E++ AA+ + + +   AVTGTNGK+TV T +G ML   G + FVGGN+G PL
Sbjct: 93  EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I          +AVVEVSS+Q++  ++ F P V+V+LN+  DHL R+     Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
             +K  +F +     + ++   + H+ +A KG R     FN         V  DT  E  
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
           TA  +   + V S L      +  RHN  N  +AA ++  L +G  VE + + ++  +  
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            HR++ V   I  V + DDSKATN +A    L +    + V+LLGG+ K
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDK 361

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Desulfococcus oleovorans (strain DSM 6200 / Hxd3) (taxid: 96561)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD PE=3 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 144/291 (49%), Gaps = 26/291 (8%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
           L + G  V+ E++ A + + ++I  + +TGTNGK+TV   +  +L    + A   GN+G 
Sbjct: 99  LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157

Query: 81  PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
           PL E A+      S+K K     V E+SS+Q+EI      P + +    TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211

Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
            NY   K  L      ++  +  + +Q+L E  K    N  WI   P V   +++    +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264

Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
            +     + +     L L N K+ G HN  N  +A  +     IG+  E + + +     
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322

Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            PHRM+ I  RD   +  ++DSKATN +++  G+  +KG   +I+ GG+ K
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLK 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Paris) GN=murD PE=3 SV=1

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 155/322 (48%), Gaps = 59/322 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P     T+ K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237

Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++   G++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
           Q K  +      F++L +P++ 
Sbjct: 355 QGKGAD------FQELAQPVSE 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter versatilis (strain Ellin345) GN=murD PE=3 SV=1

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 19/285 (6%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ AAQ +P  +  +A+TG+NGK+T  +  G +L   G +  VGGN+G P 
Sbjct: 90  KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  I+          +V+E+SS+Q+E   + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
           A  K  +F +       +L   N+   E  K  +  + W      VK  T  +     F 
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
            P  G    + + +M + G HN  N  V A   +G+   V  E +   +   +   HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAK 304
                ++GV + +DSKATN++AT   L    KG    ++LGG+ K
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFSKG--VHLILGGKDK 358

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Koribacter versatilis (strain Ellin345) (taxid: 204669)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 59/322 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P      + K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237

Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++   G++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
           Q K  +      F++L +P++ 
Sbjct: 355 QGKGAD------FQELAQPVSE 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Lens) GN=murD PE=3 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 59/322 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           Q+G  +  +++  A+ I  S  ++A+TGTNGKSTV T VG+M    G    V GN+G P+
Sbjct: 87  QAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
                  + +   +  + + V+E+SS+Q+++      P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
              K                   Q +    K   FN   +   P      + K  SF  +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237

Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
            P++   G++ Q             L + ++ + G HN+ NA  A         G+ ++ 
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
           + + ++     PHR Q V R++ GV W++DSK TN+ AT + +  + G    K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354

Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
           Q K  +      F++L +P++ 
Sbjct: 355 QGKGAD------FQELAQPVSE 370

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

>sp|Q2RK81|MURD_MOOTA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Moorella thermoacetica (strain ATCC 39073) GN=murD PE=3 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 14/289 (4%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA     G  V SEL+ A +++P  +K++A+TGTNGK+T  +  G++L   G  A VGGN
Sbjct: 83  LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +G PL +     IA P S       V EVSS+Q+E     F P V+ +LN+TPDHL+RH 
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
           +++NY   K  + ++       +L + + H      G R  + +      P +    E  
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
               ++ A G V       + + G HN  N+  AAL    L +GVD E L  T++     
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           PHR++ V  +I GV +++DSK TN EAT   + +   +  V++ GG+ K
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNK 359

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
297739715	479	unnamed protein product [Vitis vinifera]	0.957	0.661	0.739	1e-136
147779061	806	hypothetical protein VITISV_002512 [Viti	0.743	0.305	0.717	2e-99
302753318	492	hypothetical protein SELMODRAFT_229823 [	0.933	0.628	0.5	9e-85
302804608	492	hypothetical protein SELMODRAFT_119501 [	0.933	0.628	0.490	1e-83
168039117	521	predicted protein [Physcomitrella patens	0.936	0.595	0.492	2e-81
302804600	492	hypothetical protein SELMODRAFT_119124 [	0.933	0.628	0.503	3e-81
147774763	926	hypothetical protein VITISV_028258 [Viti	0.661	0.236	0.520	6e-74
225454866	307	PREDICTED: UDP-N-acetylmuramoylalanine--	0.719	0.775	0.516	1e-72
303273586	647	predicted protein [Micromonas pusilla CC	0.903	0.462	0.328	5e-36
253997371	452	UDP-N-acetylmuramoylalanine--D-glutamate	0.818	0.599	0.300	6e-28

>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/319 (73%), Positives = 274/319 (85%), Gaps = 2/319 (0%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE 
Sbjct: 87  LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
           FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
           LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   +  NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266

Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
           D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326

Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
            LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K VILLGG AKV N QE
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAKVSNSQE 386

Query: 311 SNGFEKLIEPLNHHRCVIT 329
           SNGFE+L+EPL +HRCVIT
Sbjct: 387 SNGFEQLVEPLKYHRCVIT 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/248 (71%), Positives = 206/248 (83%), Gaps = 2/248 (0%)

Query: 59  TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118
           T    ML+HLGIE FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+F
Sbjct: 234 TLAFPMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHF 293

Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HR 176
           CP+V+VVLNLT DHLERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   + 
Sbjct: 294 CPSVAVVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNE 353

Query: 177 FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
            NLAWIGAFPGVK+D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGL
Sbjct: 354 VNLAWIGAFPGVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGL 413

Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
           D+G+D EA++STIE LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K V
Sbjct: 414 DMGIDTEAISSTIEKLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSV 473

Query: 297 ILLGGQAK 304
           ILLGG AK
Sbjct: 474 ILLGGLAK 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 158/316 (50%), Positives = 212/316 (67%), Gaps = 7/316 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +Q AV+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PGV++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGVQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDEDGSLG 398

Query: 314 FEKLIEPLNHHRCVIT 329
           F+KL + L +HR ++T
Sbjct: 399 FKKLSDLLQNHRAIVT 414

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/316 (49%), Positives = 211/316 (66%), Gaps = 7/316 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL  AA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  F+GGN
Sbjct: 102 LAYAMDSGIPTISELGLAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P  ++ L +    +++N     AW+GA PG+++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGIQLDSQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398

Query: 314 FEKLIEPLNHHRCVIT 329
           F+KL + L +HR ++T
Sbjct: 399 FKKLSDLLQNHRAIVT 414

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella patens] gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/313 (49%), Positives = 207/313 (66%), Gaps = 3/313 (0%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +A  +Q+G    SEL FAA  +P +IK+ AVTGTNGKSTV TF  Q+L + G+  FVGGN
Sbjct: 134 IAAAIQAGVPAFSELGFAAAALPGNIKVAAVTGTNGKSTVTTFTSQILRNAGVRTFVGGN 193

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG PLS+    C+A P+  P F VAVVEVSSYQ+E+P   F P  +V+LNLTPDHLERHK
Sbjct: 194 LGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLELPGS-FHPKAAVILNLTPDHLERHK 252

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAK 195
           +M+ Y   KC +FS M  + + ++P  +  L    A+ G +   AW+G  PGV++D +A+
Sbjct: 253 SMEAYGSIKCRVFSRMEASDVAIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDAR 312

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
            A   VP  GV ++L L +++ +G HN HNA  AAL  L LD+G+  E + + I  L+ P
Sbjct: 313 RAIVVVPTTGVEARLYLSSLQAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAP 372

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
           PHRM+IVH+D QGV WV+DSKATN+++T  G+  + G K V+LLGGQAKV  G    GF 
Sbjct: 373 PHRMEIVHQDDQGVVWVNDSKATNVDSTSVGIRSIVGKKAVVLLGGQAKVGVGSGGLGFG 432

Query: 316 KLIEPLNHHRCVI 328
            L+E L  HR V+
Sbjct: 433 VLVESLQSHRAVV 445

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/316 (50%), Positives = 212/316 (67%), Gaps = 7/316 (2%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           LA  + SG   +SEL FAA+  P+++KI AVTGTNGKSTV TF GQ+L   G+  FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           LG P S+AA  C   PS  P +QV V+EVSSYQ+E+P   F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL----AWIGAFPGVKIDTE 193
           +M+NY  TKC LF  M ++KL ++P G++ L +    +++N     AW+GA PGV++D +
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHGDEFLRKV--AYKYNSGSTKAWLGALPGVQLDNQ 278

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           A+ A   VP     ++L L  +K +G HN  NAA A+L  L LD+GVD   L + I  L 
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLT 338

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHRMQIV +D +GV W++DSKATN++A  TG+  L   K VILLGG AKVL+   S G
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398

Query: 314 FEKLIEPLNHHRCVIT 329
           F+KL + L +HR ++T
Sbjct: 399 FKKLSDLLQNHRAIVT 414

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera]

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 154/296 (52%), Positives = 184/296 (62%), Gaps = 77/296 (26%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           + SGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE          
Sbjct: 432 MHSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIE---------- 481

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                              VAVVEVSSYQ+E+PNK+FCP++ V LNLT DHLERHKTMKN
Sbjct: 482 -------------------VAVVEVSSYQLEVPNKHFCPSIVVGLNLTSDHLERHKTMKN 522

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           YA+TK  L  +                                                V
Sbjct: 523 YAITKKRLPVY------------------------------------------------V 534

Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
           PA+GVVS+L+L  + VMGRHNY+N AVAALS LGLD+ +D EA++STIE LR PPHRMQI
Sbjct: 535 PAIGVVSKLKLGALNVMGRHNYYNVAVAALSDLGLDMXIDTEAISSTIEKLRVPPHRMQI 594

Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
           VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AKV N QES+GFE L
Sbjct: 595 VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQESDGFEPL 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like [Vitis vinifera]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/308 (51%), Positives = 191/308 (62%), Gaps = 70/308 (22%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE 
Sbjct: 10  LESHGLSFLLQSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIEV 69

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
            V GNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V V L+LT DH
Sbjct: 70  IVEGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVVVGLDLTSDH 129

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
           LERHKTMKNYA+TKC L SHM N+KLG+LPF               L+ +G   G  IDT
Sbjct: 130 LERHKTMKNYAITKCRLLSHMSNSKLGILPFVAA------------LSVLGLDMG--IDT 175

Query: 193 EAKTASFE---VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           EA +++ E   VP          H M++                                
Sbjct: 176 EAISSTIEKLRVPP---------HRMQI-------------------------------- 194

Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309
                       VH+D   VTW+DDSKATN+EAT  GL+ L   K VI LGG AKV N Q
Sbjct: 195 ------------VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQ 242

Query: 310 ESNGFEKL 317
           ES+GFE L
Sbjct: 243 ESDGFEPL 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]

 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 174/383 (45%), Gaps = 84/383 (21%)

Query: 20  CLLQSGKR--VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           C  + G +  V+SEL FA+Q +P+ + I+A++GTNGKSTV +F  Q+L       F+GGN
Sbjct: 199 CQTKQGSKCTVISELAFASQCLPKMLPIVAISGTNGKSTVCSFTAQLLASCDCRTFMGGN 258

Query: 78  LGNPLSEAAF----------HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLN 127
           +G PLS+ A           H   L    P +  AVVE SSYQ++ P        + +LN
Sbjct: 259 IGKPLSDCALEFILAEHICGHLADLGHHWP-YDAAVVECSSYQLDHPGTLRF-DAACILN 316

Query: 128 LTPDHLERHKTMKNYALTKCHLFSHMVNT-KLGLLP-----------------FGNQHL- 168
           LTPDHLERHK+M NYA  K  +F+ +  T  L +LP                     H+ 
Sbjct: 317 LTPDHLERHKSMANYATAKTQIFAGLRGTHTLAVLPKRESARGRHQSYQVESDSTTDHIV 376

Query: 169 -----------------------------NEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
                                        NE +      LA IG+ PGVK+D   K A  
Sbjct: 377 DLDYDGATLLEKCREAVIKTLMRRVSETPNERVACIGGRLAHIGSLPGVKVDLNTKIAIV 436

Query: 200 EVPAVGVV------SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEIL 252
            +P+          S + L  +  +G HN  NA++A L    L      V  L   ++ L
Sbjct: 437 HLPSNRSSSRQNSPSYVDLSAVSSLGTHNILNASIALLMAHSLSPKDFTVARLKVGLDRL 496

Query: 253 RTPPHRMQIVHR----DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
           +  PHRMQ+V +      +G+ WV+DSKATN+EA   GL            G +A    G
Sbjct: 497 KLLPHRMQLVAQTGNPSFRGIHWVNDSKATNIEAAIVGLQS---------YGRRALAKTG 547

Query: 309 QESN--GFEKLIEPLNHHRCVIT 329
             SN  GF  L+  L  H+ VIT
Sbjct: 548 TASNELGFAALVPALLKHQGVIT 570

Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylotenera mobilis JLW8] gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera mobilis JLW8]

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 158/323 (48%), Gaps = 52/323 (16%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           +Q G  V+ +++  AQ  P S K++A+TG NGK+TV T VG+M    G++  V GN+G P
Sbjct: 90  IQRGIPVVGDVELFAQYRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGLP 149

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
           + +       L    P   V V+E+SS+Q+E  N       + +LNL+ DH++R+ +M++
Sbjct: 150 VLD------TLSMETP--DVYVLELSSFQLETTNSLLA-DAATMLNLSEDHMDRYDSMQS 200

Query: 142 YALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186
           YA+ K H+F H               M   KL  + FG   L++ +    + +  +    
Sbjct: 201 YAVAKAHIFYHAKLQVLNRDDAWSLMMARAKLAQVTFG---LDDVVAEQDYGIKQVNGET 257

Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
            +              + G    + + ++K+ G HN  NA  A     G  IG+D   + 
Sbjct: 258 WL--------------SCGTHDLMNIRDLKIAGLHNASNALAAMALCRG--IGLDFAPII 301

Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVL 306
            T+   +  PHR++ V  +I  V + DDSK TN+ ATC  L  L   K V++ GG+ K  
Sbjct: 302 QTLYNFKGLPHRVEWV-ANIDDVDYYDDSKGTNVGATCAALSGLS-QKVVLIAGGEGK-- 357

Query: 307 NGQESNGFEKLIEPLN-HHRCVI 328
            GQ+   F  L E ++ + R V+
Sbjct: 358 -GQD---FSPLKEAVSTNARAVV 376

Source: Methylotenera mobilis JLW8

Species: Methylotenera mobilis

Genus: Methylotenera

Family: Methylophilaceae

Order: Methylophilales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TIGR_CMR|CHY_2071	451	CHY_2071 "UDP-N-acetylmuramoyl	0.867	0.636	0.289	1.5e-28
TIGR_CMR|GSU_3071	452	GSU_3071 "UDP-N-acetylmuramoyl	0.389	0.285	0.366	2.7e-25
UNIPROTKB|Q97RU8	450	murD "UDP-N-acetylmuramoylalan	0.791	0.582	0.298	9.9e-23
TIGR_CMR|CPS_4467	471	CPS_4467 "UDP-N-acetylmuramoyl	0.854	0.600	0.291	1.2e-22
TIGR_CMR|CJE_0482	402	CJE_0482 "UDP-N-acetylmuramoyl	0.413	0.340	0.309	3.5e-16
TIGR_CMR|SPO_1187	466	SPO_1187 "UDP-N-acetylmuramoyl	0.299	0.212	0.351	1e-15
TIGR_CMR|BA_4051	450	BA_4051 "UDP-N-acetylmuramoyla	0.842	0.62	0.248	6.5e-14
TIGR_CMR|SO_4221	439	SO_4221 "UDP-N-acetylmuramoyla	0.359	0.271	0.361	1.4e-13
UNIPROTKB|P14900	438	murD [Escherichia coli K-12 (t	0.637	0.481	0.269	4.8e-12
UNIPROTKB|Q9KPG5	440	murD "UDP-N-acetylmuramoylalan	0.685	0.515	0.255	1.1e-11

TIGR_CMR|CHY_2071 CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 88/304 (28%), Positives = 154/304 (50%)

Query:     2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
             W L +      L    +A  L+ G  V+ E++ A + +     I+AVTGTNGK+T  +++
Sbjct:    69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126

Query:    62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
             G++L   G +  + GN+G PL EA          + ++    +EVSS+Q+E   K F P 
Sbjct:   127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176

Query:   122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
             V+V+LNLTPDHL+RHKT++ Y   K  +F +   T + +L + +  +    +     + +
Sbjct:   177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236

Query:   182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
                   ++     K     V ++GV  ++  + N+ + G HN  NA +A ++      GV
Sbjct:   237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENA-LATVAACW-SFGV 294

Query:   241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
               + +   +   +   HR++ V  +I GV +V+DSK TN ++T   L   +    V++ G
Sbjct:   295 SGKNIERGLRNFQGVAHRLEKV-AEINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352

Query:   301 GQAK 304
             G+ K
Sbjct:   353 GRNK 356

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|GSU_3071 GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 230 (86.0 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 51/139 (36%), Positives = 82/139 (58%)

Query:    23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
             ++G+ V++E++ A++ I  +  ++A+TGTNGK+T  T  G++    G   FVGGN+GNPL
Sbjct:    90 RAGREVITEIELASRFI--TAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPL 147

Query:    83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
              E       L  +       VVE+SS+Q+E     F PTV+V+LN+T DHL+R+ T + Y
Sbjct:   148 IE-------LVETGAAVDRVVVEISSFQLEWIRS-FRPTVAVLLNITEDHLDRYATYQEY 199

Query:   143 ALTKCHLFSHMVNTKLGLL 161
                K  +F +   +   +L
Sbjct:   200 IDAKARIFKNQTASDWAVL 218

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|Q97RU8 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 267 (99.0 bits), Expect = 9.9e-23, P = 9.9e-23
 Identities = 84/281 (29%), Positives = 140/281 (49%)

Query:    22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             L  G  V++E++ A  +      I+ +TG+NGK+T  T +G++L   G    + GN+G P
Sbjct:    93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150

Query:    82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
              S+ A     + S K      V+E+SS+Q+ +  + F P ++V+ NL P H++ H +   
Sbjct:   151 ASQVA----QIASDK---DTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202

Query:   142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFE 200
             Y   K ++ + M      +L F NQ L + +       A +  F  + K+D  A     +
Sbjct:   203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDG-AYLEDGQ 258

Query:   201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
             +   G V  +  + + V G HN  NA +A ++V  L   VD + +  T+       HR+Q
Sbjct:   259 LYFRGEVV-MAANEIGVPGSHNVENA-LATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQ 315

Query:   261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
              V  DI+GV + +DSK+TN+ AT   L      K V++ GG
Sbjct:   316 FVD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGG 355

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CPS_4467 CPS_4467 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 267 (99.0 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 88/302 (29%), Positives = 146/302 (48%)

Query:    13 LKATGLACLLQSGKRVMSELDFAAQVIPRSI---KILAVTGTNGKSTVVTFVGQMLNHLG 69
             L + G+  L+     V+ +++    V    I   K+LAVTG+NGKSTVV+ +  +   +G
Sbjct:    87 LVSEGITALIPENCLVIGDVELFCLVNNSRISPMKMLAVTGSNGKSTVVSLLASLAKAIG 146

Query:    70 IEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--VAVVEVSSYQMEIPNKYFCPTVSVVLN 127
             + A + GN+G P+     H   + +S+   Q  + +VE+SS+Q+E  +       SV LN
Sbjct:   147 VNAALAGNIGEPILNL-LHRENVYNSQLANQPDIVIVELSSFQLETLSSMHAIAASV-LN 204

Query:   128 LTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG 187
             L+ DHL+RHKT+ NY   K  ++      K+ ++   +Q  N  +         +     
Sbjct:   205 LSDDHLDRHKTLANYQAIKQSIYPQ---AKIAVVSREDQASNTLVAAQEIISFGLNKPEQ 261

Query:   188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
                  +A      V   G  + + +  + + G HN  N  +AAL+ LG   G  + A+  
Sbjct:   262 DCFGLQAIDNKM-VMMFGEQALISIDELPLAGMHNALNY-MAALA-LGYSAGWSLSAMTE 318

Query:   248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC---TGLMD-LKG-HKCVILLGGQ 302
              +       HR Q V  +   + W++DSKATN+ AT    TGL+  L G +K +++ GG 
Sbjct:   319 NLAGFMGLAHRCQRVASE-DYIQWINDSKATNVGATLAAITGLVPTLTGQNKLILIAGGD 377

Query:   303 AK 304
              K
Sbjct:   378 GK 379

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0482 CJE_0482 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 185 (70.2 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             L+Q  K + SE DF   ++P+S+ I   +GTNGK+T       +L+H+G  A +GGN+G 
Sbjct:    71 LIQKAKNLQSEYDFFYDIMPKSVWI---SGTNGKTTTTQMATHLLSHIG--AVMGGNVGT 125

Query:    81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             PL+E            P  ++ ++E SS+ +   +K   P +  +L ++PDHL  H +  
Sbjct:   126 PLAEL----------NPYEKLWILETSSFTLHYTHKAK-PEIYALLPISPDHLSWHGSFD 174

Query:   141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175
             NY   K  +   M    + +LP    + N   K H
Sbjct:   175 NYVQDKLSVLKRMNECDVTILP--KIYANTPTKAH 207

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1187 SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 156 (60.0 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 38/108 (35%), Positives = 59/108 (54%)

Query:    44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
             +++AVTG+NGKST    +  +L+  G    + GN+G  + +        P  +    V V
Sbjct:   121 RVVAVTGSNGKSTTSALIHHILSEAGRPVQLAGNIGRGVLDIE------PGEEGS--VVV 172

Query:   104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
             +E+SSYQ ++  +   P V+V  NL+PDHL+RH  M  Y   K  LF+
Sbjct:   173 LELSSYQTDLA-RALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFA 219

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|BA_4051 BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 203 (76.5 bits), Expect = 6.5e-14, P = 6.5e-14
 Identities = 75/302 (24%), Positives = 136/302 (45%)

Query:    28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
             +++E++ A ++       + +TG+NGK+T      +ML        + GN+G    E A 
Sbjct:    99 IVTEVELAYRI--SEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEVA- 155

Query:    88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                    +K   +V V E+SS+Q+ +  + F P ++  LNL   HL+ H T K Y L K 
Sbjct:   156 -----QDAKEN-EVVVTELSSFQL-MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKA 208

Query:   148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
             ++F +       ++   +  +       +           ++     K  +    A  VV
Sbjct:   209 NIFKNQTENDYSVINADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVV 268

Query:   208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
                ++ ++ + G+HN  N  +AA+S+  L +GV  EA+ + ++      HR++ V   I 
Sbjct:   269 ---EVDDIVLPGQHNLENI-LAAMSIAKL-LGVSNEAITAVLKRFTGVKHRLEYV-TTIN 322

Query:   268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCV 327
                + +DSKATN+ AT   L        V+L GG  +   G E   F+ LI    + + +
Sbjct:   323 NRKFYNDSKATNMLATEKALSAFT-QPTVLLAGGLDR---GNE---FDDLIPYFKNVKAI 375

Query:   328 IT 329
             +T
Sbjct:   376 VT 377

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SO_4221 SO_4221 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 200 (75.5 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 47/130 (36%), Positives = 71/130 (54%)

Query:    22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             L  G  V+ +++ FA ++  R   ++ +TG+NGK+TV T VG+ML   GI   VGGN+G 
Sbjct:    87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGI 146

Query:    81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             P         AL   K    + V+E+SS+Q+E  +   C   S  LN+T DH++R+  M 
Sbjct:   147 P---------ALDLLKENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196

Query:   141 NYALTKCHLF 150
              Y   K  L+
Sbjct:   197 AYRKAKLRLY 206

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|P14900 murD [Escherichia coli K-12 (taxid:83333)]

 Score = 187 (70.9 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 63/234 (26%), Positives = 110/234 (47%)

Query:    18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
             L+    +G  ++ +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN
Sbjct:    82 LSAAADAGIEIVGDIELFCR--EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 139

Query:    78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
             +G P         AL     + ++ V+E+SS+Q+E  +       + +LN+T DH++R+ 
Sbjct:   140 IGLP---------ALMLLDDECELYVLELSSFQLETTSSLQA-VAATILNVTEDHMDRYP 189

Query:   138 T-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAK 195
               ++ Y   K  ++    N K+ ++   +  L   I+G        G   G   ++ +  
Sbjct:   190 FGLQQYRAAKLRIYE---NAKVCVVN-ADDALTMPIRGADERCVSFGVNMGDYHLNHQQG 245

Query:   196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNS 247
                  V    V   L +  MK+ G+HNY NA  A+A     GL     ++AL +
Sbjct:   246 ETWLRVKGEKV---LNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTT 296

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0071555 "cell wall organization" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=IEA;IDA

GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA

UNIPROTKB|Q9KPG5 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 184 (69.8 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 66/258 (25%), Positives = 117/258 (45%)

Query:     2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
             W L WL   +  +   G+A        +L +G  V+ +++  A  +     ++A+TG+NG
Sbjct:    61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118

Query:    54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
             KSTV    G + N  G++A VGGN+G P         AL    P  ++ V+E+SS+Q+E 
Sbjct:   119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169

Query:   114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
              +       +  LNL+ DH++R++ M++Y   K  +F H     +      N    +   
Sbjct:   170 TSSLKLKAAAF-LNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV------NADDTQTFP 222

Query:   174 GHRFNLAWI--GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVA 229
              H  +L  +  G     +    A+    E       + +    + ++GRHN  N    +A
Sbjct:   223 DHAAHLQVVTFGVEQAAQFSL-AQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLA 281

Query:   230 ALSVLGLDIGVDVEALNS 247
              L   G++  + ++AL S
Sbjct:   282 LLDSAGVNFRLALDALKS 299

GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.9	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025526001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (402 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037717001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (527 aa)	•		•			•	•		0.989
	GSVIVG00003087001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (510 aa)	•		•	•		•	•		0.983
	GSVIVG00017740001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (320 aa)	•		•	•			•		0.975
	GSVIVG00003447001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (374 aa)	•		•				•		0.975
	GSVIVG00038228001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (344 aa)	•		•				•		0.973
	GSVIVG00000431001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa)	•		•			•	•	•	0.954
	GSVIVG00027244001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (424 aa)	•						•		0.948
	GSVIVG00032399001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (228 aa)	•						•		0.946
	GSVIVG00021622001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (423 aa)	•						•		0.940
	GSVIVG00027807001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (471 aa)	•		•				•		0.919

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
COG0771	448	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta	2e-58
TIGR01087	433	TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl	1e-55
PRK14106	450	PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-40
PRK03803	448	PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-38
PRK02472	447	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	6e-38
PRK02705	459	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-37
PRK02006	498	PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-36
PRK01390	460	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-34
PRK03815	401	PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	6e-29
pfam08245	178	pfam08245, Mur_ligase_M, Mur ligase middle domain	2e-28
PRK04308	445	PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-27
PRK01438	480	PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	6e-27
PRK03806	438	PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	8e-27
PRK01368	454	PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	9e-27
PRK01710	458	PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	3e-25
PRK04663	438	PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	1e-24
PRK04690	468	PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	4e-24
PRK00141	473	PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	9e-24
COG0770	451	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy	3e-21
PRK00139	460	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta	6e-21
TIGR01085	464	TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy	1e-20
PRK00683	418	PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	2e-19
COG0769	475	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt	4e-19
TIGR01143	417	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--	2e-18
PRK03369	488	PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	5e-17
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	2e-16
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	9e-14
COG0773	459	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase	2e-09
TIGR01081	448	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm	2e-09
PRK14022	481	PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-g	1e-08
TIGR01082	448	TIGR01082, murC, UDP-N-acetylmuramate--alanine lig	4e-08
PRK00421	461	PRK00421, murC, UDP-N-acetylmuramate--L-alanine li	1e-05
PRK14573	809	PRK14573, PRK14573, bifunctional D-alanyl-alanine	7e-05
PRK11930	822	PRK11930, PRK11930, putative bifunctional UDP-N-ac	4e-04
pfam02875	88	pfam02875, Mur_ligase_C, Mur ligase family, glutam	0.003

>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

 Score =  194 bits (495), Expect = 2e-58
 Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 39/310 (12%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             +G  ++ +++   ++   +  I+A+TGTNGK+T  + +  +L   G++A +GGN+G P
Sbjct: 90  KAAGIEIIGDIELFYRLSGEA-PIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             E                V V+E+SS+Q+E   +    P ++V+LN++ DHL+RH +M+
Sbjct: 149 ALELL-------EQAEPADVYVLELSSFQLETTSS--LRPEIAVILNISEDHLDRHGSME 199

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK 195
           NYA  K  +      T++ ++   +      A +  +  + W         G  I     
Sbjct: 200 NYAAAKLRILEGQ--TEVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL 257

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
               E              +K+ G HN  N  AA+A    LG+     +EAL+S      
Sbjct: 258 VFKGEKLLPAD-------ELKLPGAHNLENALAALALARALGVPPEAILEALSS----FT 306

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
             PHR++ V  +  GV +++DSKATN++AT   L    G   +++ GG  K         
Sbjct: 307 GLPHRLEFV-GEKDGVLFINDSKATNVDATLAALSGFDG-PVILIAGGDDK------GAD 358

Query: 314 FEKLIEPLNH 323
           F  L E L  
Sbjct: 359 FSPLAEILAK 368

Length = 448

>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase

 Score =  186 bits (475), Expect = 1e-55
 Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 22/284 (7%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
             + G  V+ +++   +++P    ++A+TGTNGK+T  + +  +L   G++AF+GGN+G 
Sbjct: 82  AAKRGIPVVGDIELFLRLVPL--PVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
           P  E               ++ V+E+SS+Q+E       P ++++LN++ DHL+ H + +
Sbjct: 140 PALEVLDQ--------EGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFE 190

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
           +Y   K  +F+      + +L   +       +  +  + W           +       
Sbjct: 191 DYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFS-------VEKDAERGLC 243

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
           +   G+  +       ++G HN  N   A    L   +G+++EA+   +   +  PHR++
Sbjct: 244 IRDGGLYLKPNDLEGSLLGLHNAENILAAIA--LAKSLGLNLEAILEALRSFKGLPHRLE 301

Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
            V     GV + +DSKATN+ AT   L        ++++GG  K
Sbjct: 302 YVG-QKNGVHFYNDSKATNVHATLAALSAFDN-PVILIVGGDDK 343

[Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 433

>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  146 bits (370), Expect = 3e-40
 Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 38/302 (12%)

Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V+ E++ A +       I+A+TGTNGK+T  T +G++  + G +  V GN+G PL +A  
Sbjct: 95  VIGEVELAYRFSKA--PIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLIDAV- 151

Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                        + V EVSS+Q+E   K F P V  +LN+TPDHL+RHKTM+NY   K 
Sbjct: 152 -----EEYGED-DIIVAEVSSFQLET-IKEFKPKVGCILNITPDHLDRHKTMENYIKAKA 204

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---------GVKIDTEAKTAS 198
            +F +   +   +L + +       K  +  +                GV +       S
Sbjct: 205 RIFENQRPSDYTVLNYDDPRTRSLAKKAKARV-----IFFSRKSLLEEGVFVKNGKIVIS 259

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
                  V+    +  + + G HN  N  AA AA       +G+  + + +T++  +   
Sbjct: 260 LGGKEEEVID---IDEIFIPGEHNLENALAATAA----AYLLGISPDVIANTLKTFKGVE 312

Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
           HR++ V  +I GV +++DSK TN +A    L   +    V++ GG  K   G + + F K
Sbjct: 313 HRIEFV-AEINGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYDK---GSDFDEFAK 367

Query: 317 LI 318
             
Sbjct: 368 AF 369

Length = 450

>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  140 bits (355), Expect = 4e-38
 Identities = 94/306 (30%), Positives = 144/306 (47%), Gaps = 50/306 (16%)

Query: 41  RSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPK 98
           R  K  ++A+TG+NGKSTV T VG+M    G    VGGN+G P         AL      
Sbjct: 104 REAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP---------ALDLLSDD 154

Query: 99  FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMV 154
            ++ V+E+SS+Q+E  +      V+ VLN++ DH++R+  ++ Y   K  ++      + 
Sbjct: 155 PELYVLELSSFQLETTHSLNA-EVATVLNISEDHMDRYSDLEAYHQAKHRIYRGAKQVVF 213

Query: 155 NTK----LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
           N        L+P  NQ              W     G++        +     +  V +L
Sbjct: 214 NRDDALTRPLVPD-NQPCLSFGLNAPDFDEW-----GLREGDGETYLAHGFERLMPVREL 267

Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQ 267
                K+ G HN  N A+AAL+ LG   G+  EA+   +E+LRT    PHR + V R++ 
Sbjct: 268 -----KLRGSHNLAN-ALAALA-LGEAAGLPKEAM---LEVLRTFTGLPHRCEWV-REVA 316

Query: 268 GVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
           GV + +DSK TN+ AT   +  L  H   K V++ GG  K   G +   F  L EP+  +
Sbjct: 317 GVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGK---GAD---FSPLREPVAKY 370

Query: 325 -RCVIT 329
            R V+ 
Sbjct: 371 VRAVVL 376

Length = 448

>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  139 bits (354), Expect = 6e-38
 Identities = 89/312 (28%), Positives = 137/312 (43%), Gaps = 75/312 (24%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+ +TG+NGK+T  T +G+ML   G  A + GN+G P SE A        +       V+
Sbjct: 110 IIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPASEVA------QKATAD-DTLVM 162

Query: 105 EVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--------- 154
           E+SS+Q M I    F P ++V+ N+ P HL+ H T +NY   K ++  +           
Sbjct: 163 ELSSFQLMGIET--FRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINF 220

Query: 155 ----------NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
                      TK  ++PF      +   G       +  F G KI              
Sbjct: 221 DQEEVKELAKQTKATVVPFSTT--EKVEDGAYIKDGAL-YFKGEKI-------------- 263

Query: 205 GVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRM 259
                +   ++ + G HN  N  AA+AA  +L    GV  EA+    E+L T     HR+
Sbjct: 264 -----MAADDIVLPGSHNLENALAAIAAAKLL----GVSNEAI---REVLSTFSGVKHRL 311

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQE-SNGFEKL 317
           Q V   I G  + +DSKATN+ AT      L G ++ V+LL G      G +  N F++L
Sbjct: 312 QYV-GTIDGRKFYNDSKATNILAT---QKALSGFNQPVVLLAG------GLDRGNEFDEL 361

Query: 318 IEPLNHHRCVIT 329
           +  L + + ++ 
Sbjct: 362 VPYLKNVKAMVV 373

Length = 447

>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  138 bits (349), Expect = 4e-37
 Identities = 94/300 (31%), Positives = 141/300 (47%), Gaps = 47/300 (15%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  V+ E++ A + + + I  + +TGTNGK+TV   +  +L   G+ A   GN+G   
Sbjct: 90  ERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAA 148

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
            E A   +       K    V E+SSYQ+E   +   P + +    TPDHLERH T++NY
Sbjct: 149 CELA---LLRSGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENY 204

Query: 143 ALTKCHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
              K  L      +++ +L    P+  QH +   KG+     W          T+ K AS
Sbjct: 205 FAIKASLLE---RSEIRILNGDDPYLRQHRSSWPKGY-----WTS--------TQGK-AS 247

Query: 199 FEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEAL 245
               A G + +             L  +K+ G HN  N   AVAA  + GL      EAL
Sbjct: 248 LLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEAL 307

Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAK 304
            S   +    PHR++ +   I G+ +++DSKATN +A   GL  + G   VIL+ GG+AK
Sbjct: 308 RSFPGV----PHRLERI-GTINGIDFINDSKATNYDAAEVGLKAVPGP--VILIAGGEAK 360

Length = 459

>gnl|CDD|234995 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  135 bits (343), Expect = 4e-36
 Identities = 98/349 (28%), Positives = 146/349 (41%), Gaps = 58/349 (16%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPR------SIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
           +A   + G  V  E++  AQ +        + K+LA+TGTNGK+T     G +    G +
Sbjct: 90  VAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149

Query: 72  AFVGGNLGNPLSEAAFHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNL 128
             V GN+     +     I   ALP       V V+E+SS+Q+E       P  + VLN+
Sbjct: 150 VAVAGNISPAALDKLMEAIDAGALP------DVWVLELSSFQLET-THTLAPDAATVLNI 202

Query: 129 TPDHLERHKTMKNYALTKCHLFS---------------HMV--NTKLGLLPFGNQHLNEA 171
           T DHL+ H +M  YA  K  +F                 M         + FG   L+E 
Sbjct: 203 TQDHLDWHGSMAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGAADAVTFG---LDEP 259

Query: 172 IKGHRFNL------AWIGA-----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
                + L      AW+                 K  +   P + +   +    +++ G 
Sbjct: 260 AADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGL 319

Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
           HN  N A+AAL+ L   IG+    L   +   R  PHR+++V   I GV + DDSK TN+
Sbjct: 320 HNAAN-ALAALA-LARAIGLPAAPLLHGLREYRGEPHRVELV-ATIDGVDYYDDSKGTNV 376

Query: 281 EATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVI 328
            AT   L  L   + V++ GG  K   GQ+   F  L  P+  H R V+
Sbjct: 377 GATVAALDGL-AQRVVLIAGGDGK---GQD---FSPLAAPVARHARAVV 418

Length = 498

>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  130 bits (329), Expect = 2e-34
 Identities = 79/260 (30%), Positives = 106/260 (40%), Gaps = 48/260 (18%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
             +A+TGTNGKST    +  +L   G +  +GGN+G  +       + L       +V V
Sbjct: 115 PFIAITGTNGKSTTTALIAHILREAGRDVQMGGNIGTAV-------LTLEPPPAG-RVYV 166

Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
           +E+SSYQ++  P+    P V V+LNLTPDHL+RH TM+ YA  K  LF+           
Sbjct: 167 LELSSYQIDLAPS--LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFA---GQGPDTAV 221

Query: 163 FG---------------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            G                      I   +     + A  G  +D             G+ 
Sbjct: 222 IGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIP 281

Query: 208 SQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP--PHRMQIVH 263
           S    H        N  NA  A AA   LGL        L S       P   HRM+ V 
Sbjct: 282 SLPGAH--------NAQNAAAAYAAARALGLSPEEIAAGLAS------FPGLAHRMEQVG 327

Query: 264 RDIQGVTWVDDSKATNLEAT 283
           R   GV +V+DSKATN +A 
Sbjct: 328 R-RGGVLFVNDSKATNADAA 346

Length = 460

>gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  114 bits (288), Expect = 6e-29
 Identities = 86/293 (29%), Positives = 129/293 (44%), Gaps = 61/293 (20%)

Query: 21  LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL--GIEAFVGGNL 78
           L+Q  K ++SE D+   V+P SI I   +GTNGK+T      QM  HL     A  GGN+
Sbjct: 70  LIQKAKNLISEYDYFYDVMPFSIWI---SGTNGKTTTT----QMTTHLLEDFGAVSGGNI 122

Query: 79  GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
           G PL+E               ++ V+E SS+ +   NK   P + ++L +TPDHL  H +
Sbjct: 123 GTPLAEL----------DKNAKIWVLETSSFTLHYTNKAK-PNIYLLLPITPDHLSWHGS 171

Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
            +NY   K      M    + +LP   ++                        T+A+   
Sbjct: 172 FENYVKAKLKPLKRMNEGDVAILPKKFKNTP----------------------TKAQKIF 209

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNA----AVAALSV--LGLDIGVDVEALNS-TIEI 251
           +E          +   +    + N+       A+ AL+V  +  D  +D E LN+  I  
Sbjct: 210 YE----DEEDLAEKFGID-SEKINFKGPFLLDALLALAVYKILFD-ELDYERLNAFKIG- 262

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
                H+++   RD QG  WVDDSKATN++AT   L   K  K  ++LGG  K
Sbjct: 263 ----KHKLE-EFRDKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDK 310

Length = 401

>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain

 Score =  107 bits (270), Expect = 2e-28
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 31/192 (16%)

Query: 49  TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-----KPKFQVAV 103
           TGTNGK+T    +  +L+  G     GGN  N         I LP       K     AV
Sbjct: 1   TGTNGKTTTTELIAAILSAAGGVVGTGGNTNNA--------IGLPLLLALMPKKGADYAV 52

Query: 104 VEVSSYQMEIPNKYFC--PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
           +E+SS+ +          P ++V+ N++PDHL+ H TM+NYA  K  +F  +    + ++
Sbjct: 53  LELSSFGLGEGRLEGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVI 112

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK---TASFEVPAVGVVSQLQLH----- 213
              +  L + +K     +   G      ++ EA     A+  V + G    L        
Sbjct: 113 NADDPELAKRLKNAGAKVITFG------LENEADDLRAANIYVSSEGGEIVLFTVPGGEL 166

Query: 214 --NMKVMGRHNY 223
             ++ + GRHN 
Sbjct: 167 EISLPLPGRHNV 178

Length = 178

>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  110 bits (277), Expect = 2e-27
 Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 59/318 (18%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
            +   +    Q+G RV+ +++  A ++  R  K++A+TG+NGK+TV + VG +    G++
Sbjct: 79  ERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
             + GN+G P+ EA    +     K    V V+E+SS+Q+E   +   PT + VLN++ D
Sbjct: 139 TVIAGNIGTPVLEAE---LQREGKKA--DVWVLELSSFQLE-NTESLRPTAATVLNISED 192

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------AIK--GHR---FNLA 180
           HL+R+  + +YA TK  +F             G Q LN       A+K  G     F+L 
Sbjct: 193 HLDRYDDLLDYAHTKAKIF----RGD------GVQVLNADDAFCRAMKRAGREVKWFSLE 242

Query: 181 -----WIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
                W+    G +K   E   A+ ++P  G+                 HNAA   ++ +
Sbjct: 243 HEADFWLERETGRLKQGNEDLIATQDIPLQGL-----------------HNAA-NVMAAV 284

Query: 235 GL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
            L   +G+  EAL   ++  +  PHR++ +  +  GV ++DDSK TN+ AT   +  L+ 
Sbjct: 285 ALCEAVGLPREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ- 342

Query: 293 HKCVILLGGQAKVLNGQE 310
           +   ++LGG  K   GQ+
Sbjct: 343 NPLFVILGGMGK---GQD 357

Length = 445

>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  110 bits (276), Expect = 6e-27
 Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 49/310 (15%)

Query: 18  LACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
           LA    +G  V  E++ A ++    R    LAVTGTNGK+T V  +  ML   G+ A   
Sbjct: 95  LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS----VVLNLTPD 131
           GN+G P+ +A             + V  VE+SS+Q+     ++ P+VS     VLNL PD
Sbjct: 155 GNIGTPVLDAVRD-------PEGYDVLAVELSSFQL-----HWSPSVSPHSAAVLNLAPD 202

Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLL--PFGNQHLNEA--IKGHR---FNLA---- 180
           HL+ H +M+ YA  K  ++       +  +  P     + EA  ++G R   F L     
Sbjct: 203 HLDWHGSMEAYAAAKARIYEGTTVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGP 262

Query: 181 -WIGAFPGVKID----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235
             +G   G+ +D     + +T++ E+  +  +        +    HN  NA  AA   L 
Sbjct: 263 SQLGVVDGILVDRAFVEDRQTSALELATLEDL--------RPAAPHNIANALAAA--ALA 312

Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
              GV   A+   +   R   HR++ V  D  GVTWVDDSKATN  A       L  +  
Sbjct: 313 RSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAA---SLAAYPS 368

Query: 296 VILL-GGQAK 304
           V+ + GG AK
Sbjct: 369 VVWIAGGLAK 378

Length = 480

>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  109 bits (274), Expect = 8e-27
 Identities = 91/294 (30%), Positives = 134/294 (45%), Gaps = 85/294 (28%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G +  VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP---------ALSLLDQECELYVL 157

Query: 105 EVSSYQMEIPNKYFCPTVS------VVLNLTPDHLERH-KTMKNYALTKCHLFSH----M 153
           E+SS+Q+E        T S       +LN+T DH++R+   ++ Y   K  ++ +    +
Sbjct: 158 ELSSFQLET-------TSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCV 210

Query: 154 VNTKLGL-LPF--------------GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
           VN    L +P               G+ HLN   +G      W+    G K+        
Sbjct: 211 VNADDALTMPIRGADKRCVSFGVNMGDYHLNRQ-QGE----TWLRV-KGEKV-------- 256

Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA-ALS-VLGLDIGVDVEALNSTIEILRT-- 254
                      L    MK+ G+HNY NA  A AL+  +G+          S+++ L T  
Sbjct: 257 -----------LNTKEMKLSGQHNYTNALAALALADAVGIP-------RASSLKALTTFT 298

Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAK 304
             PHR Q+V     GV W++DSKATN+   EA   GL  + G    +LLGG  K
Sbjct: 299 GLPHRFQLVLEH-NGVRWINDSKATNVGSTEAALNGL-HVDG-TLHLLLGGDGK 349

Length = 438

>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  109 bits (274), Expect = 9e-27
 Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 28/259 (10%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +++K +A+TGTNGKST    +  +LN  G++  V GN+G P  +A        +SK  + 
Sbjct: 102 KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQAK-------ASKDGY- 153

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
             V+E+SS+Q+++  K F   ++V+LN+TPDHL+RH+ M  Y   K  +F  M      +
Sbjct: 154 --VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAV 210

Query: 161 LPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH--- 213
           +   N +  E      +  R  L     F   KI     +   +  +      +      
Sbjct: 211 INIDNDYCREIFIKLQQEQRIKLI---PFSVTKILENGISVVDDKISDNFFDDISFKLPF 267

Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
           N  + G+HN  N  A+ A   ++G++    +E+++S     ++ PHRMQ +   I  +++
Sbjct: 268 NKNLQGKHNCENIAASYAVAKIIGVEPKKILESISS----FQSLPHRMQYIGS-INNISF 322

Query: 272 VDDSKATNLEATCTGLMDL 290
            +DSKATN  +    +  L
Sbjct: 323 YNDSKATNAISAVQSIKAL 341

Length = 454

>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  105 bits (263), Expect = 3e-25
 Identities = 84/297 (28%), Positives = 133/297 (44%), Gaps = 56/297 (18%)

Query: 23  QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
           + G  + SE++   +  P   K+  VTG++GK+T  T + +ML   G + +VGGN+G PL
Sbjct: 99  EEGAYITSEMEEFIKYCPA--KVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPL 156

Query: 83  SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
               F  I     + K    V+E+SS+Q+   +    P V+VV NL+P+HL+ HK M+ Y
Sbjct: 157 ----FSNIEEIKEEDK---VVLELSSFQLMTMDV--SPEVAVVTNLSPNHLDVHKDMEEY 207

Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-----A 197
              K ++F +     L +L   N+  N   K                   EAK      +
Sbjct: 208 IDAKKNIFKYQSENDLLVLNKDNEITNGMEK-------------------EAKGDVVKFS 248

Query: 198 SFEVPAVGVVSQ-----------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEA 244
             E    G   +            +  ++K+ G HN  N  AA  A++    D  V +E+
Sbjct: 249 RKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN---DD--VSIES 303

Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
           +           HR + V R+I GV + +DS A++   T  GL   +  K VIL+ G
Sbjct: 304 MKKVATTFSGVEHRCEFV-REINGVKYYNDSIASSPTRTLAGLKAFE--KPVILIAG 357

Length = 458

>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  103 bits (258), Expect = 1e-24
 Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 55/300 (18%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
           L +G  V+ +++  A  + + +  +A+TG+NGKSTV    G M    G++  VGGN+G P
Sbjct: 89  LAAGIPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
                    AL   +   ++ V+E+SS+Q+E  +       +  LNL+ DH++R++ M++
Sbjct: 147 ---------ALDLLEQDAELYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMED 196

Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
           Y   K  +F H    +L ++   ++                  +P    + +  T  F+ 
Sbjct: 197 YRQAKLRIFDH---AELAVVNRDDKQ----------------TYPDHA-ELQLVTFGFDQ 236

Query: 202 PAVGVVSQ-----LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
              G+        L  +   V+        GRHN  N     L VL L     V+     
Sbjct: 237 QDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVAN----VLVVLALLDAAGVD-YRKA 291

Query: 249 IEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAK 304
           ++ L++     HR Q+V  D  G+ WV+DSKATN+ +T   L  L+   K  +L+GG  K
Sbjct: 292 LDALKSYTGLTHRCQVV-ADNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGK 350

Length = 438

>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  101 bits (254), Expect = 4e-24
 Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 46/279 (16%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           + VTGT GKST    +  +L   G    + GN+G PL E       + + +P  +   +E
Sbjct: 118 VCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGVPLLE-------VLAPQPAPEYWAIE 170

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH------MVNTKL 158
           +SSYQ  ++      P ++VVLNL P+HL+ H     Y   K  L +       ++N   
Sbjct: 171 LSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRPRIALLNAAD 230

Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHN 214
             L      L ++       + W     G  +  +     + A F+   V +        
Sbjct: 231 PRL--AALQLPDS------EVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLP------- 275

Query: 215 MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTW 271
               GRHN  N  A +AAL  L    G+D  AL       R  P+R+Q +  RD  G+T+
Sbjct: 276 ----GRHNRGNLCAVLAALEAL----GLDAVALAPAAAGFRPLPNRLQELGSRD--GITY 325

Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
           V+DS +T   A+   L    G +  +L+GG  + L+  +
Sbjct: 326 VNDSISTTPHASLAALDCFAGRRVALLVGGHDRGLDWTD 364

Length = 468

>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score =  100 bits (252), Expect = 9e-24
 Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 57/280 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           LAVTGTNGK+T    +  M+   G  A   GN+G P+S A         ++P+  V V E
Sbjct: 124 LAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVPVSAAL-------VAQPRIDVLVAE 176

Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
           +SS+Q+   +    P V VVLNL  DH++ H +M++YA  K    + ++   + ++   +
Sbjct: 177 LSSFQLHW-SPTLTPDVGVVLNLAEDHIDWHGSMRDYAADK----AKVLRGPVAVIGADD 231

Query: 166 QHL------NEAIKGHRFNLA-----WIGAFPGVKIDTE---------AKTASFEVPAVG 205
           +++       +      F +       +G   G  +D           A+  S   PA G
Sbjct: 232 EYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPA-G 290

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
           V+  L               AA A     G+       AL S+ E+     HR Q+V   
Sbjct: 291 VLDAL---------------AAAAVARSQGVAPEAIARAL-SSFEV---AGHRGQVVAEH 331

Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK 304
             GVTW+D+SKATN  A       L GH+ V+ + GGQ K
Sbjct: 332 -GGVTWIDNSKATNPHAADAA---LAGHESVVWVAGGQLK 367

Length = 473

>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 93.1 bits (232), Expect = 3e-21
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 30/276 (10%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----KP 97
           + K++A+TG+NGK+T    +  +L+  G      GN  N         I LP +      
Sbjct: 102 NAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNE--------IGLPLTLLRLPA 153

Query: 98  KFQVAVVEVS-SYQMEIPN--KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
             + AV+E+  ++  EI    +   P ++V+ N+   HLE   + +  A  K  + + + 
Sbjct: 154 DTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLR 213

Query: 155 NTKLGLLPFGNQHL-NEAIKG-----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVS 208
              + +L   N  L N A K        F L   G F    I  + + +SF +   G  +
Sbjct: 214 PEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEA 273

Query: 209 QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
           + +L    + GRHN  NA  AA   L L++G+D+E + + ++ L+    R++++     G
Sbjct: 274 EFEL---PLPGRHNVTNALAAAA--LALELGLDLEEIAAGLKELKPVKGRLEVILLAN-G 327

Query: 269 VTWVDDSKATNLEATCTG---LMDLKGHKCVILLGG 301
            T +DDS   N ++       L  L G K + +LG 
Sbjct: 328 KTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGD 363

Length = 451

>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional

 Score = 92.5 bits (231), Expect = 6e-21
 Identities = 66/274 (24%), Positives = 105/274 (38%), Gaps = 48/274 (17%)

Query: 26  KRVMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLG--------IEAFV 74
           ++ ++ L  AA         +K++ VTGTNGK+T    + Q+L  LG        +   +
Sbjct: 77  RKALALL--AAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGI 134

Query: 75  GGNL---GN--PLSEAAFHCIALPSSKPKFQVAVVEVSS--------YQMEIPNKYFCPT 121
           GG L   G   P +      +A          A +EVSS          ++         
Sbjct: 135 GGELIPSGLTTPDALDLQRLLAELVDA-GVTYAAMEVSSHALDQGRVDGLKF-------D 186

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN-EAIKGHRFN-L 179
           V+V  NL+ DHL+ H TM++Y   K  LFS +    +         +N +   G R   L
Sbjct: 187 VAVFTNLSRDHLDYHGTMEDYLAAKARLFSELGLAAV---------INADDEVGRRLLAL 237

Query: 180 AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
               A      D  A    +           ++    ++GR N  N   A  ++L L  G
Sbjct: 238 PDAYAVSMAGADLRATDVEYTDSGQTFTLVTEVE-SPLIGRFNVSNLLAALAALLAL--G 294

Query: 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
           V +E   + +  L+  P RM+ V      +  VD
Sbjct: 295 VPLEDALAALAKLQGVPGRMERVDAGQGPLVIVD 328

Length = 460

>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 36/254 (14%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLG--------IEAFVGGN--LGNPLSEAAFHCI 90
           + +K++ VTGTNGK+T  + + Q+L  LG        I   +GGN  + NP +      +
Sbjct: 83  KKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEAL 142

Query: 91  ALPSSKPKF-----QVAVVEVSSYQMEIPNKYFCPTVSVVL-NLTPDHLERHKTMKNYAL 144
            L S+  +      Q AV+EVSS+ +           + V  NL+ DHL+ H TM+NY  
Sbjct: 143 TLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFA 202

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK--------- 195
            K  LF     T+LGL  F   +L++   G +F            I   A          
Sbjct: 203 AKASLF-----TELGLKRFAVINLDDEY-GAQFVKRLPKDITVSAITQPADGRAQDIKIT 256

Query: 196 --TASFEVPAVGVVSQLQLHNMKV--MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
               SFE       +     ++    +GR N +N   A  ++L L  G+D+E + + +E 
Sbjct: 257 DSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHL-GGIDLEDIVAALEK 315

Query: 252 LRTPPHRMQIVHRD 265
            R  P RM++V   
Sbjct: 316 FRGVPGRMELVDGG 329

Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 464

>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 87.9 bits (218), Expect = 2e-19
 Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 51/265 (19%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
           L +TG+ GK+T + F+  +L  LGI AF  GN+G P+ +                V VVE
Sbjct: 105 LGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPILDGMQQP----------GVRVVE 154

Query: 106 VSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
           +SS+Q+ +    Y   +  ++LN++ +HL+ H  +  Y   K ++   + N         
Sbjct: 155 ISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRNPD------- 207

Query: 165 NQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
                           W+G     G       +     +     +  L LH+     R+N
Sbjct: 208 --------------DLWVGDERSYGHSYLEYVQEIMRLLDKGSALKPLYLHD-----RYN 248

Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATN 279
           Y  A   A  V  +       +  S +E + T   PPHRM+ +     GV +++DSKAT 
Sbjct: 249 YCAAYALANEVFPI-------SEESFLEAVATFEKPPHRMEYLGEK-DGVHYINDSKATT 300

Query: 280 LEATCTGLMDLKGHKCVILLGGQAK 304
           + A    L+ +     VI LGG+ K
Sbjct: 301 VSAVEKALLAVGNQVIVI-LGGRNK 324

Length = 418

>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 40/252 (15%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIAL--PSS----- 95
           +K++ VTGTNGK+T  + + Q+L  LG +  + G  G+ LS        L  P +     
Sbjct: 91  LKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQN 150

Query: 96  ------KPKFQVAVVEVSSYQMEIPNKYFCP-TVSVVLNLTPDHLERHKTMKNYALTKCH 148
                     ++AV+EVSS+ +           V V  NL+ DHL+ H TM+ Y   K  
Sbjct: 151 LLRDLLDRGAEIAVMEVSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAV 210

Query: 149 LFSHMVNTKLGLL----PFGNQHLNEA-----------IKGHRFNLAWIGAFPGVKIDTE 193
           LF  + ++   ++      G  +                   R +L + G      I+  
Sbjct: 211 LFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRG------IEES 264

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
           +  + F     G + +     + + G  N +NA  A  + L L  GVD+E + + +E L+
Sbjct: 265 SSGSDFVFEPSGGIGEY---ELPLPGLFNVYNALAAVAAALAL--GVDLEDILAGLETLK 319

Query: 254 TPPHRMQIVHRD 265
             P RM++V+  
Sbjct: 320 PVPGRMELVNIG 331

Length = 475

>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           S K++ +TG++GK+T    +  +L+H        GN  N    PL+        L  +  
Sbjct: 73  SGKVIGITGSSGKTTTKEMLAAILSHKYKVVATPGNFNNEIGLPLT--------LLRAPG 124

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
               AV+E+  S+  EI   Y      P ++V+ N+ P HLE   +++  A  K  +   
Sbjct: 125 DHDYAVLEMGASHPGEI--AYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQG 182

Query: 153 MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------EAKTASFEVPAVGV 206
           +    + ++   +    +          +    P   I +      + + A     A+G 
Sbjct: 183 LKENGIAVINADDPAFLD----------FAKRLPNRNILSFGFEGGDFRAADISYSALGS 232

Query: 207 VS-QLQLHNMK------VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
            S  L     +      ++GRHN  NA  AA   L L++G+ +E +   +  L+    R 
Sbjct: 233 TSFTLVTPGGEFEVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRF 290

Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGL 287
           +I  R   G+T +DD+   N ++    L
Sbjct: 291 EIQTR--NGLTLIDDTYNANPDSMRAAL 316

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 417

>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 80/261 (30%), Positives = 111/261 (42%), Gaps = 53/261 (20%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF 99
           PR  + L VTGTNGK+T  + +  ML   G  + + GN+G+P+         L       
Sbjct: 116 PR--RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSPV---------LDVLDEPA 164

Query: 100 QVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158
           ++  VE+SS+Q+   P+    P    VLN+  DHL+ H TM  YA  K    +  V   +
Sbjct: 165 ELLAVELSSFQLHWAPS--LRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALTGRVAV-V 221

Query: 159 GL-LPFGNQHLNEAIK----GHRFNLAWIGAFPGVK----ID-------TEAKTASFEVP 202
           GL        L+ A      G R      G   GV+    +D         A  AS  VP
Sbjct: 222 GLDDSRAAALLDTAPAPVRVGFRLGEPAAGEL-GVRDGHLVDRAFADDLRLAPVASIPVP 280

Query: 203 A-VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
             VGV+  L                A AAL+     +GV   A+   +   R   HR ++
Sbjct: 281 GPVGVLDAL----------------AAAALA---RAVGVPAGAIADALASFRVGRHRAEV 321

Query: 262 VHRDIQGVTWVDDSKATNLEA 282
           V     G+T+VDDSKATN  A
Sbjct: 322 VAV-ADGITYVDDSKATNPHA 341

Length = 488

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 66/253 (26%), Positives = 93/253 (36%), Gaps = 49/253 (19%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKP---- 97
            + ++AVTGTNGK++    + Q+L  LG      G LG  L       I    + P    
Sbjct: 111 QLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDG---RLIPGSLTTPDAII 167

Query: 98  -----------KFQVAVVEVSSYQMEIPNKYFCPTVSVVL--NLTPDHLERHKTMKNYAL 144
                            +E SS+ +E   +     ++V    NLT DHL+ H TM++Y  
Sbjct: 168 LHRILARMRAAGADAVAMEASSHGLEQ-GRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEE 226

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIGAFPG-VKIDTEAKTA 197
            K  LFS        L   G   +N         LA       +G  P     D +A   
Sbjct: 227 AKAALFSK-------LPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQA--R 277

Query: 198 SFEVPAVGVVSQLQLHN------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTI 249
                A G V  L   +       +++GR N  N     AAL  LGL +     AL    
Sbjct: 278 DLRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARAL---- 333

Query: 250 EILRTPPHRMQIV 262
             +   P RM+ V
Sbjct: 334 AAVSPVPGRMERV 346

Length = 958

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 60/285 (21%), Positives = 104/285 (36%), Gaps = 42/285 (14%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV---GGNLGN----PLSEAAFHCIALPS 94
           S+ ++A+TG+NGK+T    +  +L     E  V    GN  N    PL+        L  
Sbjct: 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLT--------LLR 653

Query: 95  SKPKFQVAVVEV---SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
            + + + AV E+      ++        PTV++V N   +H E   +++  A  K  + +
Sbjct: 654 LRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIA 713

Query: 152 HMVNTKLGLLPFGNQHLNEAIKGH------RFNLAWIGAFPGVKIDT-----EAKTASFE 200
            +    + ++   + +     K        RF L         KI       EA     +
Sbjct: 714 ALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQ 773

Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
           V      +++ L    ++G HN  N  AA+A     G  +      L       +    R
Sbjct: 774 VVTPAGSAEVYL---PLIGEHNLRNALAAIACALAAGASLKQIRAGLER----FQPVAGR 826

Query: 259 MQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLG 300
           MQ       G   +DD+   N   + A    L +L      ++LG
Sbjct: 827 MQRRRLS-CGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLG 870

Length = 958

>gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 52/251 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L N  + A      L S    F   V
Sbjct: 110 IAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGTNAR-----LGSGDY-F---V 160

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
            E           ++ P V++V N+  DHL+ +  ++         F H V      +PF
Sbjct: 161 AEADESDSSF--LHYNPRVAIVTNIEFDHLDYYGDLEAIK----QAFHHFVRN----VPF 210

Query: 164 GN--------QHLNEAIKG------HRFNLAWIGAFPGVKIDTEAKTASFEV----PAVG 205
                      +L E +          +       +    I  +    +F+V      +G
Sbjct: 211 YGRAVVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELG 270

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V       + + GRHN  NA  A+A    LG+D     EAL S   + R    R ++  
Sbjct: 271 EV------KLPLPGRHNVLNALAAIAVARELGIDPEAIAEALASFQGVKR----RFELK- 319

Query: 264 RDIQGVTWVDD 274
            ++ GVT +DD
Sbjct: 320 GEVNGVTVIDD 330

Length = 459

>gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 49/276 (17%)

Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVA 102
           +LAV GT+GK+T  + +  +L   G++    +GG  GN      F   A     P F   
Sbjct: 104 VLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN------FGVSARLGESPFF--- 154

Query: 103 VVEVSSYQMEIPNK-----YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157
           V+E   Y     +K     ++ P   V+ NL  DH +    +K  A+ +   F H+V T 
Sbjct: 155 VIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLK--AIQR--QFHHLVRTV 210

Query: 158 LG----LLPFGNQHLNEAI-KGHRFNLAWIGA---FPGVKIDTEAKTASFEV----PAVG 205
            G    L P  +Q L + + KG      + G    +   KI  +   + F+V      VG
Sbjct: 211 PGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADG--SHFDVLLDGEKVG 268

Query: 206 VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
            V         ++GRHN HNA  A+AA   +G+ I    EAL S +   R    R+++  
Sbjct: 269 EV------KWSLVGRHNMHNALMAIAAARHVGVAIEDACEALGSFVNAKR----RLEL-K 317

Query: 264 RDIQGVTWVDD--SKATNLEATCTGLMDLKGHKCVI 297
            +  G+T  DD     T +EAT  GL    G   ++
Sbjct: 318 GEANGITVYDDFAHHPTAIEATLQGLRQKVGGARIL 353

Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 70/263 (26%), Positives = 107/263 (40%), Gaps = 46/263 (17%)

Query: 26  KRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGI-------------E 71
           K+ MS +       P+  +K+LA TGT GK+T   F   +L  L               E
Sbjct: 92  KKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGE 151

Query: 72  AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY---FCPTVSVVLNL 128
            F    L  P S   F  +A  +        ++EVSS    +   Y   F   V V LN+
Sbjct: 152 TFFKSALTTPESLDLFKMMA-EAVDNGMTHLIMEVSSQAYLVGRVYGLTF--DVGVFLNI 208

Query: 129 TPDHLE--RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE-----AIKGHRFNLAW 181
           TPDH+    H T ++Y   K  L     N+K  ++     H +E       + H F    
Sbjct: 209 TPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDF---- 261

Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGV 240
            G     +I   +   SFE        +L    +++++G+ N  NA  A L+ L L  G 
Sbjct: 262 YGIDSENQI-MASNAFSFEATG-----KLAGTYDIQLIGKFNQENAMAAGLACLRL--GA 313

Query: 241 DVEALNSTIEILRTP-PHRMQIV 262
            +E +   I   +TP P RM+++
Sbjct: 314 SLEDIQKGIA--QTPVPGRMEVL 334

Length = 481

>gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 45/248 (18%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T    +  +L   G++    VGG +       A     L S +      V
Sbjct: 102 IAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK-----EAGTNARLGSGEY----LV 152

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLP 162
            E         +    P V++V N+ PDHL+ +  + +         F   ++     LP
Sbjct: 153 AEADESDASFLH--LQPNVAIVTNIEPDHLDTYGSSFERLKAA----FEKFIHN----LP 202

Query: 163 FG--------NQHLNEAIKGHRFNLAWIGAFPGVK-----IDTEAKTASFEVPAVGVVSQ 209
           F         +  L E +              G        + +   A  +     V  +
Sbjct: 203 FYGLAVICADDPVLRELVPK-ATEQVITYGGSGEDADYRAENIQQSGAEGK---FSVRGK 258

Query: 210 LQLHN---MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
            +L+    + + GRHN  NA  A    + L++G+D EA+   +   +    R +I+  + 
Sbjct: 259 GKLYLEFTLNLPGRHNVLNALAAIA--VALELGIDFEAILRALANFQGVKRRFEIL-GEF 315

Query: 267 QGVTWVDD 274
            GV  +DD
Sbjct: 316 GGVLLIDD 323

This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081 [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 448

>gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 46.6 bits (112), Expect = 1e-05
 Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 48/220 (21%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +AV GT+GK+T  + +  +L   G++    +GG L    + A      L +S       V
Sbjct: 110 IAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAAGTNA-----RLGNSD----YFV 160

Query: 104 VEV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
            E      S+      K   P +++V N+  DHL+ +   ++        F    +    
Sbjct: 161 AEADESDRSF-----LKLH-PDIAIVTNIDADHLDYYGDFEDLKDA----FQEFAH---- 206

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIG-----AFPGVKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G      F    I  +     F+V   G 
Sbjct: 207 NLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE 266

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
           V+    L    + GRHN  N A+AA++V  L++G+D EA+
Sbjct: 267 VLGDFTLP---LPGRHNVLN-ALAAIAV-ALELGIDDEAI 301

Length = 461

>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGN 80
              G R++   +  A+++   I IL V+G++GK+TV + +  +      + ++  G L  
Sbjct: 84  KSRGNRLVHRAELLAELMQEQISIL-VSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQ 142

Query: 81  PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                    +   S   ++ VA  + S   +    K++ P  SV+ N+  +HL   +  +
Sbjct: 143 -------EGLNGYSGSSEYFVAEADESDGSL----KHYTPEFSVITNIDNEHLSNFEGDR 191

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
              L     F+  V         G+   L   ++GH +  +       +    E   + F
Sbjct: 192 ELLLASIQDFARKVQQINKCFYNGDCPRLKGCLQGHSYGFSSSCDLHILSYYQEGWRSYF 251

Query: 200 EVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVA---ALSVLGLDIGVDVEALNSTIEILR 253
               +GVV Q   L L     +G HN  NAA A   AL+ LG+D G    AL     + R
Sbjct: 252 SAKFLGVVYQDIELNL-----VGMHNVANAAAAMGIALT-LGIDEGAIRNALKGFSGVQR 305

Query: 254 TPPHRMQ 260
               R++
Sbjct: 306 ----RLE 308

Length = 809

>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 43/131 (32%)

Query: 43  IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--------GGNLGNPLS----------- 83
           I ++ +TG+NGK    T V + L  L    +            +G PLS           
Sbjct: 107 IPVIGITGSNGK----TIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQLNEEHELG 162

Query: 84  --EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
             EA         S+P            +ME   K   PT+ ++ N+   H E  +++K 
Sbjct: 163 IFEAGI-------SQPG-----------EMEALQKIIKPTIGILTNIGGAHQENFRSIKQ 204

Query: 142 YALTKCHLFSH 152
             + K  LF  
Sbjct: 205 KIMEKLKLFKD 215

Length = 822

>gnl|CDD|217262 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 255 PPHRMQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLGG 301
            P R+++V     GV  +DD  A N   +EA    L +L     +IL+ G
Sbjct: 1   VPGRLEVVGEG-NGVLVIDD-YAHNPDAMEAALRALRNLFPQGRLILVFG 48

This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesised by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	100.0
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	100.0
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	100.0
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	100.0
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	100.0
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	100.0
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK10773	453	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
TIGR01143	417	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
PRK14093	479	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop	100.0
COG0770	451	MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce	100.0
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	100.0
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	100.0
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	100.0
PRK14022	481	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l	100.0
PRK11930	822	putative bifunctional UDP-N-acetylmuramoyl-tripept	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
TIGR01499	397	folC folylpolyglutamate synthase/dihydrofolate syn	100.0
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	100.0
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	100.0
PLN02913	510	dihydrofolate synthetase	100.0
COG0285	427	FolC Folylpolyglutamate synthase [Coenzyme metabol	100.0
PRK10846	416	bifunctional folylpolyglutamate synthase/ dihydrof	100.0
PLN02881	530	tetrahydrofolylpolyglutamate synthase	100.0
PRK14016	727	cyanophycin synthetase; Provisional	100.0
PF08245	188	Mur_ligase_M: Mur ligase middle domain; InterPro:	100.0
KOG2525	496	consensus Folylpolyglutamate synthase [Coenzyme tr	99.97
PF02875	91	Mur_ligase_C: Mur ligase family, glutamate ligase	99.17
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.55
PRK09435	332	membrane ATPase/protein kinase; Provisional	93.88
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	92.93
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	92.69
PRK15453	290	phosphoribulokinase; Provisional	92.3
cd02040	270	NifH NifH gene encodes component II (iron protein)	92.23
TIGR03172	232	probable selenium-dependent hydroxylase accessory	92.23
PRK13232	273	nifH nitrogenase reductase; Reviewed	91.37
cd02117	212	NifH_like This family contains the NifH (iron prot	91.31
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	90.69
PRK13849	231	putative crown gall tumor protein VirC1; Provision	90.51
PHA02518	211	ParA-like protein; Provisional	90.4
PRK13869	405	plasmid-partitioning protein RepA; Provisional	90.35
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	90.29
PRK13235	274	nifH nitrogenase reductase; Reviewed	90.23
PRK10037	250	cell division protein; Provisional	90.2
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	90.19
PHA02519	387	plasmid partition protein SopA; Reviewed	90.03
COG2894	272	MinD Septum formation inhibitor-activating ATPase	89.93
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	89.87
COG4240	300	Predicted kinase [General function prediction only	89.75
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	89.71
PRK13705	388	plasmid-partitioning protein SopA; Provisional	89.59
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	89.58
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	89.57
PRK13230	279	nitrogenase reductase-like protein; Reviewed	89.55
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	89.36
COG2403	449	Predicted GTPase [General function prediction only	89.13
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	88.83
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	88.79
cd02032	267	Bchl_like This family of proteins contains bchL an	88.64
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	88.26
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	88.24
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	88.01
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	87.94
PRK13234	295	nifH nitrogenase reductase; Reviewed	87.72
cd03116	159	MobB Molybdenum is an essential trace element in t	87.65
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	87.36
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	87.35
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	87.24
TIGR01287	275	nifH nitrogenase iron protein. This model describe	87.22
PRK11670	369	antiporter inner membrane protein; Provisional	87.16
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	86.92
PRK14974	336	cell division protein FtsY; Provisional	86.57
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	86.57
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	86.23
PRK13233	275	nifH nitrogenase reductase; Reviewed	86.19
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	85.89
PRK13231	264	nitrogenase reductase-like protein; Reviewed	85.8
PRK13236	296	nitrogenase reductase; Reviewed	85.72
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	85.64
PRK07667	193	uridine kinase; Provisional	85.61
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	85.57
PRK00784	488	cobyric acid synthase; Provisional	85.55
PRK10416	318	signal recognition particle-docking protein FtsY;	85.49
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	85.46
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	85.26
CHL00175	281	minD septum-site determining protein; Validated	85.25
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	85.18
TIGR00064	272	ftsY signal recognition particle-docking protein F	85.1
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	85.06
PRK10818	270	cell division inhibitor MinD; Provisional	85.05
COG1192	259	Soj ATPases involved in chromosome partitioning [C	84.99
PRK06696	223	uridine kinase; Validated	84.83
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	84.68
PRK05439	311	pantothenate kinase; Provisional	84.63
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	84.56
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	84.28
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	84.21
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	83.64
PRK12374	231	putative dithiobiotin synthetase; Provisional	83.63
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	83.37
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	82.89
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	82.71
COG3367	339	Uncharacterized conserved protein [Function unknow	82.64
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	82.59
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	82.32
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	82.29
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	82.28
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	82.01
cd02036	179	MinD Bacterial cell division requires the formatio	81.72
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	81.7
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	80.98
PRK03846	198	adenylylsulfate kinase; Provisional	80.63
CHL00072	290	chlL photochlorophyllide reductase subunit L	80.6
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	80.45
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	80.43

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.8e-58  Score=431.31  Aligned_cols=296  Identities=27%  Similarity=0.441  Sum_probs=252.5

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||.||++|++||.+++|+..|++++.+++++++.. ...|+|+|||||||||||+||+++|++.|+++.++||+|.|
T Consensus        70 ~d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p  148 (448)
T COG0771          70 FDLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP  148 (448)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence            36899999999999999999999999999999999986 36679999999999999999999999999999999999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      ......+       ..+.|+.|+|+||+|++.... ++|++++||||++||+|||+|+|+|..+|.+|+++..+  ++|+
T Consensus       149 ~l~~~~~-------~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vi  218 (448)
T COG0771         149 ALELLEQ-------AEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVI  218 (448)
T ss_pred             HHHhhcc-------cCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEE
Confidence            8876431       346789999999999998765 89999999999999999999999999999999997644  8999


Q ss_pred             eCCChhhHHHHhc-cCccEEEeccCCCcc---cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059          162 PFGNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (331)
Q Consensus       162 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~  237 (331)
                      |.||+++..+... ....+.+|+......   +..+...   ..  .+ +.-+....++++|.||++|+++|+  |+|..
T Consensus       219 n~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~---~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~  290 (448)
T COG0771         219 NADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL---VF--KG-EKLLPADELKLPGAHNLENALAAL--ALARA  290 (448)
T ss_pred             eCCcHHHhhhhhhcccceeEEEEccccccccceeecchh---cc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHH
Confidence            9999999888765 344566666543221   0000000   00  01 111112368999999999999999  99999


Q ss_pred             cCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhh
Q 020059          238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL  317 (331)
Q Consensus       238 lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l  317 (331)
                      +|++.+.|.++|.+|++++||||.+. +.+|+.||+|++|+|+.|+..||+.++ +|+++|+|+.++.+      ||.+|
T Consensus       291 ~gv~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~------df~~L  362 (448)
T COG0771         291 LGVPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGA------DFSPL  362 (448)
T ss_pred             cCCCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCC------ChhHH
Confidence            99999999999999999999999997 689999999999999999999999998 79999999999876      58899


Q ss_pred             hhhhcce
Q 020059          318 IEPLNHH  324 (331)
Q Consensus       318 ~~~l~~~  324 (331)
                      .+.+++.
T Consensus       363 ~~~~~~~  369 (448)
T COG0771         363 AEILAKV  369 (448)
T ss_pred             HHHhhhc
Confidence            9999764

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=100.00  E-value=5.2e-57  Score=432.42  Aligned_cols=294  Identities=23%  Similarity=0.425  Sum_probs=245.7

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||+||+++++||++++|+++|+|++++.+++++++  +.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus        63 ~d~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~  140 (433)
T TIGR01087        63 ADLVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP  140 (433)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence            36899999999999999999999999999999999887  6689999999999999999999999999999999999998


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      ......        ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++..++++.+|+
T Consensus       141 ~~~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~  211 (433)
T TIGR01087       141 ALEVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVL  211 (433)
T ss_pred             HHHHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            543221        135689999999998875543 79999999999999999999999999999999998888899999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCC
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~  241 (331)
                      |.||+.+..+......++.+||...+..       ..+.....+..+....+.++++|.||++|+++|+  +++..+|++
T Consensus       212 n~dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~  282 (433)
T TIGR01087       212 NADDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLN  282 (433)
T ss_pred             ECCCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence            9999988777665556778887532111       0111111111111112468999999999999999  899999999


Q ss_pred             HHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (331)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l  321 (331)
                      .+.|+++|++|++++||||++. ..+++.+|||+++|||+|+.++++.++ +|+++|+|++.+.+      ||+++.+.+
T Consensus       283 ~~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~~------d~~~~~~~l  354 (433)
T TIGR01087       283 LEAILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKGA------DFSPLAPAA  354 (433)
T ss_pred             HHHHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHH
Confidence            9999999999999999999996 457899999988999999999999995 47999999987654      577888877


Q ss_pred             cc
Q 020059          322 NH  323 (331)
Q Consensus       322 ~~  323 (331)
                      .+
T Consensus       355 ~~  356 (433)
T TIGR01087       355 AG  356 (433)
T ss_pred             Hh
Confidence            54

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=7.2e-57  Score=431.03  Aligned_cols=303  Identities=25%  Similarity=0.363  Sum_probs=244.9

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||.||+++++||++++|+++|+|++++++++++.. ++.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus        64 ~d~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p  142 (454)
T PRK01368         64 LDKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVP  142 (454)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHH
Confidence            36899999999999999999999999999999998876 46689999999999999999999999999999999999998


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      ....          ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+
T Consensus       143 ~l~~----------~~~~~~~VlE~ss~ql~~~~-~~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vl  211 (454)
T PRK01368        143 ALQA----------KASKDGYVLELSSFQLDLVK-TFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVI  211 (454)
T ss_pred             Hhcc----------cCCCCEEEEEcCchhhcccc-ccCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            6432          12347899999999987654 389999999999999999999999999999999998888899999


Q ss_pred             eCCChhhHHHHhcc----CccEEEeccCCCcccccccccceEEEec-CceeEEEEeecCCCCcHHHHHHHHHHHHHHHHH
Q 020059          162 PFGNQHLNEAIKGH----RFNLAWIGAFPGVKIDTEAKTASFEVPA-VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL  236 (331)
Q Consensus       162 n~dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~  236 (331)
                      |.||+.+..+....    ..++++|+...............+.... ..... ...+.++++|.||++|+++|+  +++.
T Consensus       212 n~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~hn~~Na~aAi--a~~~  288 (454)
T PRK01368        212 NIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISF-KLPFNKNLQGKHNCENIAASY--AVAK  288 (454)
T ss_pred             eCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcce-EEEecCCCCchhhHHHHHHHH--HHHH
Confidence            99999988765332    2356777753211000000000111110 01001 112357899999999999999  8899


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhh
Q 020059          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK  316 (331)
Q Consensus       237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~  316 (331)
                      .+|++.+.|+++|++|+++|||||++. ..+++.+|||++||||+|+.+++++++  ++++|+|++++.+      +|.+
T Consensus       289 ~lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~dk~~------~~~~  359 (454)
T PRK01368        289 IIGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIPKEG------GIEE  359 (454)
T ss_pred             HcCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccCCCC------CHHH
Confidence            999999999999999999999999996 457899999999999999999999994  6999999996543      6888


Q ss_pred             hhhhhcceeEEE
Q 020059          317 LIEPLNHHRCVI  328 (331)
Q Consensus       317 l~~~l~~~~~~i  328 (331)
                      |.+.+.+.+.++
T Consensus       360 L~~~~~~v~~v~  371 (454)
T PRK01368        360 IKPYFSKIKKAY  371 (454)
T ss_pred             HHHHHHhhcEEE
Confidence            888776544443

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.9e-56  Score=427.14  Aligned_cols=292  Identities=28%  Similarity=0.421  Sum_probs=239.9

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||+||+++++||++++|+++|+|++++++++++.+  +.++|+||||||||||++||+++|+..|.++.++||+|.|
T Consensus        69 ~d~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~  146 (438)
T PRK04663         69 ADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP  146 (438)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHH
Confidence            46899999999999999999999999999999998877  4689999999999999999999999999999999999998


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      .... .        ..+.+++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.++++.   .+.+|+
T Consensus       147 ~~~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~  213 (438)
T PRK04663        147 ALDL-L--------EQDAELYVLELSSFQLETTS-SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVV  213 (438)
T ss_pred             HHhh-h--------cCCCCEEEEEcChhhhccCc-ccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEE
Confidence            6321 1        23468999999999887543 489999999999999999999999999999999985   378999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCC-CcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~  240 (331)
                      |.||+.......  ..++.+||... ++.+.. .....+.... +.. .+...+++++|.||++|+++|+  +++..+|+
T Consensus       214 n~dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi  286 (438)
T PRK04663        214 NRDDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADN-GQP-VLASAELKLVGRHNVANVLVVL--ALLDAAGV  286 (438)
T ss_pred             eCCCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeC-Cce-eeehhhcCCcchhhHHHHHHHH--HHHHHcCC
Confidence            999998754432  34567887542 111110 0111222221 111 1123578999999999999999  89999999


Q ss_pred             CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEEcCCCCCCCCccCCChhhhhh
Q 020059          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE  319 (331)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~G~~~~~g~~~~~~~~~~l~~  319 (331)
                      ++++|+++|++|++++||||++. ..+++.+|||+|++||+|+.+|++.+. ++|+|+|+|+|.+.++      |.++.+
T Consensus       287 ~~~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~------~~~l~~  359 (438)
T PRK04663        287 DYRKALDALKSYTGLTHRCQVVA-DNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGAD------FSPLKP  359 (438)
T ss_pred             CHHHHHHHHHhCCCCCCceEEee-eeCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCC------HHHHHH
Confidence            99999999999999999999996 357899999999999999999999985 3689999999988874      667877


Q ss_pred             hhc
Q 020059          320 PLN  322 (331)
Q Consensus       320 ~l~  322 (331)
                      .++
T Consensus       360 ~~~  362 (438)
T PRK04663        360 VLA  362 (438)
T ss_pred             HHH
Confidence            775

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.7e-55  Score=423.05  Aligned_cols=305  Identities=27%  Similarity=0.449  Sum_probs=244.8

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC-CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN   80 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~   80 (331)
                      .++||+||+++++||++++|+++|+|++++++++++... .+.++|+||||||||||+.||+++|+..|.++.+.||+|.
T Consensus        68 ~d~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~  147 (445)
T PRK04308         68 FDILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT  147 (445)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccH
Confidence            468999999999999999999999999999999988762 1468999999999999999999999999999889999999


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEE
Q 020059           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL  160 (331)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v  160 (331)
                      |+.......     ...+.|++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.++++   +++.+|
T Consensus       148 ~~~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~-~~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i  218 (445)
T PRK04308        148 PVLEAELQR-----EGKKADVWVLELSSFQLENTE-SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQV  218 (445)
T ss_pred             HHHHHHHhh-----cCCCCcEEEEEeChHHhCcCc-ccCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEE
Confidence            976543210     123578999999999887654 47999999999999999999999999999999987   468999


Q ss_pred             EeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059          161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (331)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~  240 (331)
                      +|.||+....+... ..++.+|+.....++........+...  +.. .....+++++|.||++|+++|+  +++..+|+
T Consensus       219 ~n~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi  292 (445)
T PRK04308        219 LNADDAFCRAMKRA-GREVKWFSLEHEADFWLERETGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGL  292 (445)
T ss_pred             EeCCcHHHHHHhhc-CCcEEEecCCCCCceeEeccCCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCC
Confidence            99999988776543 356778875321111000000112221  111 1112468999999999999999  88999999


Q ss_pred             CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP  320 (331)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~  320 (331)
                      ++++++++|++|+++|||||++. ..++..+|||+|+|||+|+.++++.+. +++++|+|+|.+.+      ||+++.+.
T Consensus       293 ~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~------~~~~~~~~  364 (445)
T PRK04308        293 PREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQ------DFTPLRDA  364 (445)
T ss_pred             CHHHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCC------CHHHHHHH
Confidence            99999999999999999999996 357889999999999999999999995 47999999998765      56677776


Q ss_pred             hcc-eeEEEe
Q 020059          321 LNH-HRCVIT  329 (331)
Q Consensus       321 l~~-~~~~i~  329 (331)
                      +.+ .+.+++
T Consensus       365 l~~~~~~vil  374 (445)
T PRK04308        365 LAGKAKGVFL  374 (445)
T ss_pred             HHHhCcEEEE
Confidence            654 344443

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.1e-55  Score=422.84  Aligned_cols=300  Identities=26%  Similarity=0.397  Sum_probs=243.7

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||+||+++++||++++|+++|++++++++++++.+  +.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus        69 ~d~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p  146 (448)
T PRK03803         69 ASEIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP  146 (448)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence            36899999999999999999999999999999999887  5689999999999999999999999999999999999998


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      .....         ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++.   .+.+|+
T Consensus       147 ~~~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~  213 (448)
T PRK03803        147 ALDLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVF  213 (448)
T ss_pred             HHHHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEE
Confidence            74321         124588999999999876654 79999999999999999999999999999999984   478999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCCC----cccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~  237 (331)
                      |.||+....+... ..++.+|+....    +.+... ....+.... +. ..+...+++++|.||++|+++|+  +++..
T Consensus       214 n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~l~l~G~Hn~~NalaAi--a~a~~  287 (448)
T PRK03803        214 NRDDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAHG-FE-RLMPVRELKLRGSHNLANALAAL--ALGEA  287 (448)
T ss_pred             eCCCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEeC-Cc-eEEehhccCCCCHHHHHHHHHHH--HHHHH
Confidence            9999988776543 245677775311    111000 011122211 11 11122468999999999999999  89999


Q ss_pred             cCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCCh
Q 020059          238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGF  314 (331)
Q Consensus       238 lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~  314 (331)
                      +|++++.|+++|++|+++|||||++. ..+++.+|||+|||||+|+.++++.+.   ++|+++|+|++.+.+      ||
T Consensus       288 lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~------d~  360 (448)
T PRK03803        288 AGLPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGA------DF  360 (448)
T ss_pred             cCCCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCC------CH
Confidence            99999999999999999999999996 457789999999999999999999984   258999999987754      68


Q ss_pred             hhhhhhhcc-eeEEEe
Q 020059          315 EKLIEPLNH-HRCVIT  329 (331)
Q Consensus       315 ~~l~~~l~~-~~~~i~  329 (331)
                      +++.+.+.+ .+.+++
T Consensus       361 ~~l~~~l~~~~~~vil  376 (448)
T PRK03803        361 SPLREPVAKYVRAVVL  376 (448)
T ss_pred             HHHHHHHHhhCCEEEE
Confidence            888888854 355543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=5.2e-55  Score=422.60  Aligned_cols=301  Identities=24%  Similarity=0.325  Sum_probs=237.4

Q ss_pred             eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC-----CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      ++||.||+++++||++++|+++|+|++++++++++...     ...++|+||||||||||++||+++|+..|.++.+.||
T Consensus        72 D~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn  151 (488)
T PRK03369         72 ALVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN  151 (488)
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC
Confidence            68999999999999999999999999999999876531     1347999999999999999999999999999899999


Q ss_pred             CcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCc
Q 020059           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (331)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~  157 (331)
                      +|.|+... +        ..+.+++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.+|++    ++
T Consensus       152 iG~p~~~~-~--------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~  217 (488)
T PRK03369        152 IGSPVLDV-L--------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GR  217 (488)
T ss_pred             CchHHHHh-c--------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CC
Confidence            99997432 1        23578999999999887553 48999999999999999999999999999999997    37


Q ss_pred             eEEEeCCChhhHHHHhccCcc-EEEeccCCCcccccccccceEEEe--cCceeEEEEeecCCCCcHHHHHHHHHHHHHHH
Q 020059          158 LGLLPFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVP--AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (331)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~  234 (331)
                      .+|+|.||+....+....... ...++.......+.......+...  ..+.. .....+++++|.||++|+++|+  ++
T Consensus       218 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl--a~  294 (488)
T PRK03369        218 VAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA--AL  294 (488)
T ss_pred             EEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH--HH
Confidence            899999999887765433222 222321110000000000011000  00100 0112468899999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCCh
Q 020059          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF  314 (331)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~  314 (331)
                      +..+|++.+.|+++|++|++++||||++. ..+++.+|||+|||||+|+.++++.++  ++++|+|++.+..      ||
T Consensus       295 a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~~------d~  365 (488)
T PRK03369        295 ARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKGA------SV  365 (488)
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCCC------CH
Confidence            99999999999999999999999999996 467889999999999999999999884  6999998888753      78


Q ss_pred             hhhhhhhc-ceeEEEe
Q 020059          315 EKLIEPLN-HHRCVIT  329 (331)
Q Consensus       315 ~~l~~~l~-~~~~~i~  329 (331)
                      .++++.++ +.+.+++
T Consensus       366 ~~l~~~l~~~~~~vi~  381 (488)
T PRK03369        366 DALVAEMASRLVGAVL  381 (488)
T ss_pred             HHHHHHHhhheeEEEE
Confidence            89999885 4566654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.2e-54  Score=416.17  Aligned_cols=302  Identities=26%  Similarity=0.363  Sum_probs=244.3

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||.||+++++||++.+|+++|+|++++++.+.+..  +.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus        78 ~dlVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p  155 (458)
T PRK01710         78 FDVIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTP  155 (458)
T ss_pred             CCEEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChh
Confidence            47899999999999999999999999999999887765  5689999999999999999999999999999899999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      +......       ..+.+++|+|+|++++....  ++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+
T Consensus       156 ~~~~~~~-------~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~  226 (458)
T PRK01710        156 LFSNIEE-------IKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVL  226 (458)
T ss_pred             HHHHHhh-------CCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            8643211       22568899999998776553  69999999999999999999999999999999998888899999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCCCccccccc-ccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~  240 (331)
                      |.||+.+..+......++++||...+.. .... ....+...  +... ....+++++|.||++|+++|+  |++..+ +
T Consensus       227 n~Dd~~~~~~~~~~~~~~~~fg~~~~~~-~~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i  299 (458)
T PRK01710        227 NKDNEITNGMEKEAKGDVVKFSRKEKVY-EGAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-V  299 (458)
T ss_pred             eCCcHHHHHHHhhcCCcEEEEeCCCCCC-CceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-C
Confidence            9999998777654445677887532110 0000 01112221  1111 113578999999999999999  777776 9


Q ss_pred             CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP  320 (331)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~  320 (331)
                      +.++|.++|++|++++||||.+. ..+++.+|||+|+|||.|+.++|+.+.. ++++|+|+..+      ..+|.++.+.
T Consensus       300 ~~~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~~~------~~~~~~l~~~  371 (458)
T PRK01710        300 SIESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGYDK------KIPFEPLAEE  371 (458)
T ss_pred             CHHHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCcCC------CCCHHHHHHH
Confidence            99999999999999999999986 3578999999999999999999999964 78999997543      2479999987


Q ss_pred             hc-ceeEEEe
Q 020059          321 LN-HHRCVIT  329 (331)
Q Consensus       321 l~-~~~~~i~  329 (331)
                      +. ..+.+++
T Consensus       372 ~~~~~~~vi~  381 (458)
T PRK01710        372 GYEKIKTLIL  381 (458)
T ss_pred             HHhhccEEEE
Confidence            75 3344543

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.5e-54  Score=414.84  Aligned_cols=302  Identities=26%  Similarity=0.361  Sum_probs=239.3

Q ss_pred             eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhh-----CCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~-----~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      ++||+||+++++||++++|+++|++++++++++.+.     +....++|+||||||||||++||+++|+..|+++.+.||
T Consensus        76 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn  155 (473)
T PRK00141         76 SLVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGN  155 (473)
T ss_pred             CEEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEecc
Confidence            689999999999999999999999999999986553     212347999999999999999999999999999999999


Q ss_pred             CcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCc
Q 020059           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK  157 (331)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~  157 (331)
                      +|.|++....       ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++    .+
T Consensus       156 ig~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~  223 (473)
T PRK00141        156 IGVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GP  223 (473)
T ss_pred             CChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CC
Confidence            9999874322       134568999999999886543 48999999999999999999999999999999996    36


Q ss_pred             eEEEeCCChhhHHHHhcc-CccEEEeccCCCcccccccccceEEEecCceeEEEE-eecCCCCcHHHHHHHHHHHHHHHH
Q 020059          158 LGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG  235 (331)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~~n~~NalaA~~~a~~  235 (331)
                      .+|+|.||+.+..+.... ..++++||.........+.....+....++..+.+. ...++++|.||++|+++|+  +++
T Consensus       224 ~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~  301 (473)
T PRK00141        224 VAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVA  301 (473)
T ss_pred             EEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHH
Confidence            899999999988776543 235678875321100000111112211122222221 2468999999999999999  899


Q ss_pred             HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCC-CCCCCCccCCCh
Q 020059          236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ-AKVLNGQESNGF  314 (331)
Q Consensus       236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~-~~~g~~~~~~~~  314 (331)
                      ..+|++.+.++++|++|++++||||++. ..++..+|||+|||||+|++++++.++  ++++|+|++ .++       |+
T Consensus       302 ~~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdk-------d~  371 (473)
T PRK00141        302 RSQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGA-------DI  371 (473)
T ss_pred             HHcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCC-------Ch
Confidence            9999999999999999999888999996 356789999999999999999999995  688999666 444       78


Q ss_pred             hhhhhhhcc-eeEEE
Q 020059          315 EKLIEPLNH-HRCVI  328 (331)
Q Consensus       315 ~~l~~~l~~-~~~~i  328 (331)
                      +++++.+.+ .+.++
T Consensus       372 ~~~~~~l~~~~~~~~  386 (473)
T PRK00141        372 DDLIRTHAPRIKAAV  386 (473)
T ss_pred             HHHHHHHHhhccEEE
Confidence            899988854 34343

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.9e-54  Score=414.27  Aligned_cols=305  Identities=27%  Similarity=0.397  Sum_probs=246.4

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      +++||.||+++++||++++|+++|++++++.+++.+..  +.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus        69 ~d~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p  146 (447)
T PRK02472         69 FDLMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYP  146 (447)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChh
Confidence            57899999999999999999999999999999866665  5689999999999999999999999999999999999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      .+....       ...+.+++|+|+|++++.... .++|+++|||||++||+++|||+|+|+++|.++++..++.+.+|+
T Consensus       147 ~~~~~~-------~~~~~~~~V~E~ss~~~~~~~-~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~  218 (447)
T PRK02472        147 ASEVAQ-------KATADDTLVMELSSFQLMGIE-TFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVI  218 (447)
T ss_pred             hHHHHh-------cCCCCCEEEEEcCchhhCccc-ccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            765311       123468999999998876443 479999999999999999999999999999999998878889999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCC
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD  241 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~  241 (331)
                      |.||+....+......++.+|+...............+...  +.. .+...+++++|.||++|+++|+  +++..+|++
T Consensus       219 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~  293 (447)
T PRK02472        219 NFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVS  293 (447)
T ss_pred             eCCcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCC
Confidence            99999887766555556777775422100000000012221  111 1112368999999999999999  889999999


Q ss_pred             HHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (331)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l  321 (331)
                      .+.|+++|++|++++||||++. ..++..+|||+|||||+|+.++++.+ ++|+++|+|++...      .+|.++++.+
T Consensus       294 ~~~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~-~~~ii~I~g~~~~~------~~~~~l~~~l  365 (447)
T PRK02472        294 NEAIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGF-NQPVVLLAGGLDRG------NEFDELVPYL  365 (447)
T ss_pred             HHHHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhC-CCCEEEEECCCCCC------CCHHHHHHHH
Confidence            9999999999999999999996 35678999998899999999999998 46899999975432      2788999888


Q ss_pred             cceeEEEe
Q 020059          322 NHHRCVIT  329 (331)
Q Consensus       322 ~~~~~~i~  329 (331)
                      .+.+.+++
T Consensus       366 ~~~~~v~~  373 (447)
T PRK02472        366 KNVKAMVV  373 (447)
T ss_pred             hccCEEEE
Confidence            66655543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=6.7e-54  Score=413.89  Aligned_cols=306  Identities=26%  Similarity=0.407  Sum_probs=242.9

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||+||+++++||++++|++.|++++++++++++.. .+.++|+||||||||||++||+++|+..|.++..+||+|.|
T Consensus        69 ~d~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~  147 (459)
T PRK02705         69 PDLVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYA  147 (459)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChh
Confidence            36799999999999999999999999999999998876 46789999999999999999999999999999899999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      ......  + ......+.|++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+++|.++++   +++.+|+
T Consensus       148 ~~~~~~--~-~~~~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~---~~~~~Vl  220 (459)
T PRK02705        148 ACELAL--L-RSGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLE---RSEIRIL  220 (459)
T ss_pred             HHHHHh--h-hhccCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhc---cCCEEEE
Confidence            875432  0 0011346789999999999887765 8999999999999999999999999999999998   3679999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCCC-cccc-cccc--cceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFPG-VKID-TEAK--TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~  237 (331)
                      |.||+.+..+..... +..+++.... .... .+..  .....+.. +.. .+...+++++|.||++|+++|+  +++..
T Consensus       221 n~dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~  295 (459)
T PRK02705        221 NGDDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVER-GEP-LFPLSALKMPGAHNLQNLLLAV--AAARL  295 (459)
T ss_pred             ECCCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEEC-Ccc-eeeHHHcCCccHHHHHHHHHHH--HHHHH
Confidence            999998877754432 3456654211 1100 0000  00011111 110 1111358999999999999999  89999


Q ss_pred             cCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhh
Q 020059          238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL  317 (331)
Q Consensus       238 lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l  317 (331)
                      +|++++.+.++|++|++++||||++. ..+++.+|||+|||||+|+.++++.++ +++++|+|+|.+.++      +.++
T Consensus       296 lgv~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~-~~~i~IlGg~~~~~d------~~~~  367 (459)
T PRK02705        296 AGLSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVP-GPVILIAGGEAKQGD------DSAW  367 (459)
T ss_pred             cCCCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCC-CCeEEEecCccCCCC------HHHH
Confidence            99999999999999999999999986 356789999988999999999999996 478999999988764      6677


Q ss_pred             hhhhcc-eeEEE
Q 020059          318 IEPLNH-HRCVI  328 (331)
Q Consensus       318 ~~~l~~-~~~~i  328 (331)
                      ++.+.+ .+.++
T Consensus       368 ~~~l~~~~~~vi  379 (459)
T PRK02705        368 LKQIKAKAAAVL  379 (459)
T ss_pred             HHHHHhheeEEE
Confidence            777743 34444

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=8.3e-54  Score=410.72  Aligned_cols=293  Identities=27%  Similarity=0.418  Sum_probs=237.9

Q ss_pred             eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccc
Q 020059            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (331)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (331)
                      +++|.||+++++||++.+|+++|++++++.+++.+..  +.++|+||||||||||++||+++|+..|+++.++||+|.|.
T Consensus        67 d~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~  144 (438)
T PRK03806         67 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPA  144 (438)
T ss_pred             CEEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhH
Confidence            6899999999999999999999999999999987766  56899999999999999999999999999999999999986


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceEEE
Q 020059           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      ... .        ..+.+++|+|+|+++++... .++|+++|||||++||+|+| +|+|+|+++|.++++.   .+.+|+
T Consensus       145 ~~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~  211 (438)
T PRK03806        145 LSL-L--------DQECELYVLELSSFQLETTS-SLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV  211 (438)
T ss_pred             HHh-h--------ccCCCEEEEEccchhhccCc-ccCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEE
Confidence            321 1        23468999999999887654 37899999999999999999 5999999999999984   478999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCC-CcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~  240 (331)
                      |.||+....+... ..++.+|+... ++..... ....+.... +.. .+..++++++|.||++|+++|+  |++..+|+
T Consensus       212 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi  285 (438)
T PRK03806        212 NADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVK-GEK-VLNTKEMKLSGQHNYTNALAAL--ALADAVGI  285 (438)
T ss_pred             eCCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEec-Cce-eeehhhcCCcccccHHHHHHHH--HHHHHcCC
Confidence            9999988775432 34566776431 1111100 111111111 111 1123468999999999999999  89999999


Q ss_pred             CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEEcCCCCCCCCccCCChhhhhh
Q 020059          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE  319 (331)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~G~~~~~g~~~~~~~~~~l~~  319 (331)
                      ++++++++|++|++++||||++. ..+++.+|||+|+|||+|++++++.+. ++|+++|+|++.+.+      ||.++.+
T Consensus       286 ~~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~------d~~~l~~  358 (438)
T PRK03806        286 PRASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA------DFSPLAR  358 (438)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCC------CHHHHHH
Confidence            99999999999999999999996 356889999988999999999999996 357999999987765      5778887


Q ss_pred             hhcc
Q 020059          320 PLNH  323 (331)
Q Consensus       320 ~l~~  323 (331)
                      .+++
T Consensus       359 ~l~~  362 (438)
T PRK03806        359 YLNG  362 (438)
T ss_pred             HHHh
Confidence            7753

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.2e-53  Score=411.02  Aligned_cols=303  Identities=23%  Similarity=0.310  Sum_probs=241.7

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHH-HHhhCCC---CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~-~~~~~~~---~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      .++||.||+++++||++++|+++|+|+++++++ +.+....   ..++|+||||||||||+.||+++|+..|.++.+.||
T Consensus        70 ~d~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gn  149 (468)
T PRK04690         70 FDVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN  149 (468)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCC
Confidence            368999999999999999999999999999998 4443311   247999999999999999999999999998999999


Q ss_pred             CcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059           78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (331)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~  156 (331)
                      +|.|+.....       ...+.+++|+|+|++++..... .++|+++|||||++||+|+|||+|+|.++|.++++..++ 
T Consensus       150 iG~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-  221 (468)
T PRK04690        150 IGVPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-  221 (468)
T ss_pred             CCcchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-
Confidence            9999854321       1235689999999998765543 378999999999999999999999999999999987543 


Q ss_pred             ceEEEeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHH
Q 020059          157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL  236 (331)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~  236 (331)
                      +.+|+|.||+....+.. ...++.+|+...+....     ..+.+.. + ...+....++++|.||++|+++|+  +++.
T Consensus       222 ~~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~l~G~h~~~Na~~A~--a~~~  291 (468)
T PRK04690        222 RIALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-E-QALFDTALVPLPGRHNRGNLCAVL--AALE  291 (468)
T ss_pred             CeEEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-C-ceEEeeccccCccHhhHHHHHHHH--HHHH
Confidence            67899999998766532 23466777643211110     1122221 1 111223468899999999999999  8889


Q ss_pred             HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhh
Q 020059          237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK  316 (331)
Q Consensus       237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~  316 (331)
                      .+|++.+.|+++|++|+++|||||++. ..+|+.+||||+||||+++.++++.++.+++++|+|++.++.      ||.+
T Consensus       292 ~lgi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~k------d~~~  364 (468)
T PRK04690        292 ALGLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGL------DWTD  364 (468)
T ss_pred             HcCCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCC------CHHH
Confidence            999999999999999998899999996 456899999988999999999999987668999999875432      7889


Q ss_pred             hhhhhcce--eEEEe
Q 020059          317 LIEPLNHH--RCVIT  329 (331)
Q Consensus       317 l~~~l~~~--~~~i~  329 (331)
                      +++.+.+.  +.+++
T Consensus       365 l~~~l~~~~~~~v~~  379 (468)
T PRK04690        365 FAAHMAQRAPLEIVT  379 (468)
T ss_pred             HHHHHHhccCeEEEE
Confidence            99988653  44444

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=2.2e-53  Score=410.09  Aligned_cols=304  Identities=26%  Similarity=0.353  Sum_probs=238.7

Q ss_pred             ceeeeeccccccCCh----HHHHHHHcCCeeeeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059            2 WMLWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p----~~~~a~~~g~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .++||+||+++++||    ++..|++.|+|++++++++++.+.   .+.++|+||||||||||++||+++|+..|+++.+
T Consensus        66 ~d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~  145 (460)
T PRK01390         66 FAALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQM  145 (460)
T ss_pred             CCEEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEE
Confidence            468999999999988    999999999999999999887641   2568999999999999999999999999999999


Q ss_pred             cccCcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccC
Q 020059           75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV  154 (331)
Q Consensus        75 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~  154 (331)
                      +||+|.|+.....        ..+.+++|+|+|+++++..+. ++|+++|||||+.||+++|||+|+|+++|+++++..+
T Consensus       146 ~gnig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~  216 (460)
T PRK01390        146 GGNIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQG  216 (460)
T ss_pred             cCccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCC
Confidence            9999998765321        235689999999999876554 7999999999999999999999999999999999776


Q ss_pred             CCceEEEeCCChhhHHHHhcc---CccEEEeccCCCc--ccccccccceEEEecCceeEEEEe-ecCCCCcHHHHHHHHH
Q 020059          155 NTKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAV  228 (331)
Q Consensus       155 ~~~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~G~~n~~Nala  228 (331)
                      + +.+|+|.||+.+..+....   ..++.+++.....  ..... ....+..........+.. ..++++|.||++|+++
T Consensus       217 ~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~a  294 (460)
T PRK01390        217 P-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAA  294 (460)
T ss_pred             C-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHH
Confidence            6 8999999999887765432   2356677643210  00000 011122111000001100 0157899999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCC
Q 020059          229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG  308 (331)
Q Consensus       229 A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~  308 (331)
                      |+  +++..+|++.+.|+++|++|+++|||||++. ..++..+|||+|||||+|+.++|+.++  ++++|+|+++++.  
T Consensus       295 Ai--aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~--  367 (460)
T PRK01390        295 AY--AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEG--  367 (460)
T ss_pred             HH--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCC--
Confidence            99  8899999999999999999998999999996 346789999988999999999999874  7899999876653  


Q ss_pred             ccCCChhhhhhhhcceeEE
Q 020059          309 QESNGFEKLIEPLNHHRCV  327 (331)
Q Consensus       309 ~~~~~~~~l~~~l~~~~~~  327 (331)
                          +++.|.+.+...+.+
T Consensus       368 ----~~~~L~~~~~~v~~v  382 (460)
T PRK01390        368 ----GIESLAPFFPRIAKA  382 (460)
T ss_pred             ----CHHHHHHHHHhhCEE
Confidence                466676655444443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.6e-53  Score=410.77  Aligned_cols=307  Identities=30%  Similarity=0.395  Sum_probs=240.9

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC--CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG   79 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~--~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g   79 (331)
                      .++||+|++++|++|++..|++.|++++++++++++...  ++.++|+||||||||||++||+++|+..|.++.+.||+|
T Consensus        79 ~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig  158 (480)
T PRK01438         79 TDLVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIG  158 (480)
T ss_pred             CCEEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCcc
Confidence            478999999999999999999999999999999877652  245799999999999999999999999999999999999


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceE
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG  159 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~  159 (331)
                      .|+.....       ...+.+++|+|+|+++++..+ .++|+++|||||+.||+++|||+|+|+++|.+|++.  ..+.+
T Consensus       159 ~~~~~~~~-------~~~~~~~~V~E~ss~~l~~~~-~i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~  228 (480)
T PRK01438        159 TPVLDAVR-------DPEGYDVLAVELSSFQLHWSP-SVSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVAC  228 (480)
T ss_pred             HHHHHHHh-------cCCCCCEEEEEcChHHhCcCc-ccCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceE
Confidence            98764221       234678999999999887665 378999999999999999999999999999999985  34689


Q ss_pred             EEeCCChhhHHHHhcc----CccEEEeccCCC----cccccccc-cceEEEecCceeEEEE-eecCCCCcHHHHHHHHHH
Q 020059          160 LLPFGNQHLNEAIKGH----RFNLAWIGAFPG----VKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVA  229 (331)
Q Consensus       160 v~n~dd~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~l~G~~n~~NalaA  229 (331)
                      |+|.|||....+....    ..++.+|+....    +....+.. ...+.....+..+.+. ..+++++|.||++|+++|
T Consensus       229 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA  308 (480)
T PRK01438        229 VYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA  308 (480)
T ss_pred             EEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence            9999999887765432    345667764211    11000000 0001111001111111 125899999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCc
Q 020059          230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ  309 (331)
Q Consensus       230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~  309 (331)
                      +  +++..+|++.+.|+++|++|++++||||++. ..+++.+|||+|||||+|++++|+.++  ++++|+|++.+..   
T Consensus       309 i--a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~-~~~~~~iiDDs~ahNp~a~~aaL~~l~--~i~~I~gG~~~~k---  380 (480)
T PRK01438        309 A--ALARSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAASLAAYP--SVVWIAGGLAKGA---  380 (480)
T ss_pred             H--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEecCccCCHHHHHHHHHhCC--CEEEEEecccCCC---
Confidence            9  8888999999999999999999999999996 356788999989999999999999993  7899997555432   


Q ss_pred             cCCChhhhhhhhcc-eeEEEe
Q 020059          310 ESNGFEKLIEPLNH-HRCVIT  329 (331)
Q Consensus       310 ~~~~~~~l~~~l~~-~~~~i~  329 (331)
                         |+..+++.+.+ .+.+++
T Consensus       381 ---d~~~~~~~l~~~~~~vi~  398 (480)
T PRK01438        381 ---DFDDLVRRAAGRLRGVVL  398 (480)
T ss_pred             ---CHHHHHHHHHhhceEEEE
Confidence               78888888854 455554

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=3.9e-52  Score=400.74  Aligned_cols=307  Identities=27%  Similarity=0.448  Sum_probs=245.4

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||.+++++++||++.+|+++|++++++++.+.+.. + .++|+||||||||||++||+++|+..|+++.+.|++|.|
T Consensus        69 ~d~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~  146 (450)
T PRK14106         69 VDLVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYP  146 (450)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHH
Confidence            46899999999999999999999999999999998876 3 799999999999999999999999999988899999998


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      +......       ..+.+++|+|+|+++..... .++|+++|||||+.||+++|||+|+|+++|.++++..++.+.+++
T Consensus       147 ~~~~~~~-------~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vl  218 (450)
T PRK14106        147 LIDAVEE-------YGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVL  218 (450)
T ss_pred             HHHHHhc-------CCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEE
Confidence            7643221       22568999999987654333 479999999999999999999999999999999998888899999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEE-EeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~~n~~NalaA~~~a~~~~lg~  240 (331)
                      |.||+....+......++.+|+.+.............+.+..++..... ....++++|.||++|+++|+  +++..+|+
T Consensus       219 n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi  296 (450)
T PRK14106        219 NYDDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGI  296 (450)
T ss_pred             eCCcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCC
Confidence            9999988877766666778888542111000000112222222211111 11368999999999999999  88999999


Q ss_pred             CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP  320 (331)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~  320 (331)
                      +.++++++|++|+++|||||++. ..++..+|+|+|||||+|++++++.++ +++++|+|+|...      .+|.++++.
T Consensus       297 ~~~~i~~~L~~~~~~~gR~e~i~-~~~~~~vi~D~~ahNP~s~~~~l~~l~-~~~i~v~g~~~~~------k~~~~~~~~  368 (450)
T PRK14106        297 SPDVIANTLKTFKGVEHRIEFVA-EINGVKFINDSKGTNPDAAIKALEAYE-TPIVLIAGGYDKG------SDFDEFAKA  368 (450)
T ss_pred             CHHHHHHHHHhCCCCCcceEEEe-eECCEEEEeCCCccCHHHHHHHHHhCC-CCeEEEeCCcCCC------CCHHHHHHH
Confidence            99999999999998999999985 345688999978999999999999995 4688899877432      268888887


Q ss_pred             hcc-eeEEE
Q 020059          321 LNH-HRCVI  328 (331)
Q Consensus       321 l~~-~~~~i  328 (331)
                      +.+ .+.++
T Consensus       369 l~~~~~~vi  377 (450)
T PRK14106        369 FKEKVKKLI  377 (450)
T ss_pred             HHhhCCEEE
Confidence            753 34443

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.1e-52  Score=386.35  Aligned_cols=307  Identities=20%  Similarity=0.260  Sum_probs=245.5

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee--ecccCc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLG   79 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~--~~g~~g   79 (331)
                      ++.||+|+|++++|||+++|+++++|+++|.+++..++ +....|+|+||+||||||+||+++|.+.|+.+.  .+|.+.
T Consensus        67 ~~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~  145 (459)
T COG0773          67 ADVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILK  145 (459)
T ss_pred             CceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccc
Confidence            35699999999999999999999999999999999998 578999999999999999999999999998763  344332


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceE
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG  159 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~  159 (331)
                      ..-....         ....+++|+|++++...++  .++|+++|+|||..||+|+|+++|++.+++..+++.+|..|.+
T Consensus       146 ~~g~na~---------~g~~~~fV~EADEsD~sFl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~  214 (459)
T COG0773         146 NFGTNAR---------LGSGDYFVAEADESDSSFL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRA  214 (459)
T ss_pred             cCCcccc---------cCCCceEEEEecccccccc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceE
Confidence            2211111         2233789999998875554  3799999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHhc-cCccEEEeccCC--Ccc---cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059          160 LLPFGNQHLNEAIKG-HRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV  233 (331)
Q Consensus       160 v~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a  233 (331)
                      |+|.|||.++++... +..++.+||.+.  ++.   +..+.....|.+...+.  .+..+.++++|+||+.|+++|+  |
T Consensus       215 v~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a  290 (459)
T COG0773         215 VVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--A  290 (459)
T ss_pred             EEECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--H
Confidence            999999999997765 566789999875  222   12222333354444443  2345689999999999999999  9


Q ss_pred             HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----C-CcEEEEEcCCCCCCCC
Q 020059          234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----G-HKCVILLGGQAKVLNG  308 (331)
Q Consensus       234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~-~~~i~V~G~~~~~g~~  308 (331)
                      +|..+|++.+.|+++|++|+++.+|||+.+ +.+++++|||| +|+|..+.++|+.++    . +|+++||---.-.-- 
T Consensus       291 ~a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySRt-  367 (459)
T COG0773         291 VARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSRT-  367 (459)
T ss_pred             HHHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHhH-
Confidence            999999999999999999999999999887 57889999995 999999999887763    2 688888854321111 


Q ss_pred             ccCCChhhhhhhhcceeEEEe
Q 020059          309 QESNGFEKLIEPLNHHRCVIT  329 (331)
Q Consensus       309 ~~~~~~~~l~~~l~~~~~~i~  329 (331)
                        ..-+.+.++.++..+.+++
T Consensus       368 --~~~~~dF~~~l~~AD~v~l  386 (459)
T COG0773         368 --RDLLDDFAKALSDADEVIL  386 (459)
T ss_pred             --HHHHHHHHHHHhcCCEEEE
Confidence              1135666777766655553

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=100.00  E-value=3.1e-52  Score=400.53  Aligned_cols=305  Identities=19%  Similarity=0.277  Sum_probs=239.5

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCC--CeeecccCc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLG   79 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~--~~~~~g~~g   79 (331)
                      .++||+||+++++||++++|+++|+|++++++++++.+ ++.++|+||||||||||+.||+++|+..|+  ++..+|+++
T Consensus        59 ~d~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~  137 (448)
T TIGR01082        59 ADVVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK  137 (448)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccc
Confidence            46899999999999999999999999999999999887 356899999999999999999999999997  556788888


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhh-ccCCHHHHHHHHHHhccccCCCce
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKL  158 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~-~~gt~e~~~~~K~~i~~~~~~~~~  158 (331)
                      .+......         ...+++|+|+|++++..  ..++|+++|||||++||+| +|+|+|+|+++|.++++.+++++.
T Consensus       138 ~~~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~  206 (448)
T TIGR01082       138 EAGTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGL  206 (448)
T ss_pred             cCCccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCE
Confidence            77654321         23588999999988755  3479999999999999999 888999999999999998878899


Q ss_pred             EEEeCCChhhHHHHhccCccEEEeccCC-C--ccc---ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHH
Q 020059          159 GLLPFGNQHLNEAIKGHRFNLAWIGAFP-G--VKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS  232 (331)
Q Consensus       159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~  232 (331)
                      +|+|.||+....+......++.+|+... .  +..   ........|.+...+.  ......++++|.||++|+++|+  
T Consensus       207 ~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~--  282 (448)
T TIGR01082       207 AVICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI--  282 (448)
T ss_pred             EEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--
Confidence            9999999998877655445677887541 1  111   0001111222221111  1112468899999999999999  


Q ss_pred             HHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcC--CCCCC
Q 020059          233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAKVL  306 (331)
Q Consensus       233 a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~--~~~~g  306 (331)
                      +++..+|++.+.+.++|++|++++||||++. ..+++.+|||+ ||||.++.++++.++    .+|+++|+|+  +.+..
T Consensus       283 a~~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D~-ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k  360 (448)
T TIGR01082       283 AVALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDDY-AHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTR  360 (448)
T ss_pred             HHHHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEcC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHH
Confidence            8899999999999999999999999999996 45779999995 999999998877663    3578899985  43321


Q ss_pred             CCccCCChhhhhhhhcceeEEEe
Q 020059          307 NGQESNGFEKLIEPLNHHRCVIT  329 (331)
Q Consensus       307 ~~~~~~~~~~l~~~l~~~~~~i~  329 (331)
                      +     ++.++++.+++.+.+++
T Consensus       361 ~-----~~~~~~~~l~~~d~v~l  378 (448)
T TIGR01082       361 D-----LFDDFAKVLSDADELIL  378 (448)
T ss_pred             H-----HHHHHHHHHHhCCEEEE
Confidence            1     35677877765555443

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=3.3e-52  Score=401.69  Aligned_cols=303  Identities=19%  Similarity=0.244  Sum_probs=234.2

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCC--eeecccCc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLG   79 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~--~~~~g~~g   79 (331)
                      .++||.||+++++||++++|+++|+|+++++++++++. ++.++|+||||||||||+.|++++|+..|+.  +..+|+++
T Consensus        67 ~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~  145 (461)
T PRK00421         67 ADVVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILN  145 (461)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceec
Confidence            46899999999999999999999999999999999887 3458999999999999999999999999964  44566544


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceE
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG  159 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~  159 (331)
                      .+.....         ..+.+++|+|+|+++...  ..++|+++|||||++||+|+|||+|+|+++|.+++..+++++.+
T Consensus       146 ~~~~~~~---------~~~~~~~V~E~ss~q~~~--~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~  214 (461)
T PRK00421        146 AAGTNAR---------LGNSDYFVAEADESDRSF--LKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGAL  214 (461)
T ss_pred             cCCcccc---------cCCCCEEEEECCCccchH--hhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEE
Confidence            4322111         234689999999987643  24799999999999999999999999999999999888778899


Q ss_pred             EEeCCChhhHHHHhccCccEEEeccCC--Ccccc---cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHH
Q 020059          160 LLPFGNQHLNEAIKGHRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (331)
Q Consensus       160 v~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~  234 (331)
                      |+|.||+....+......++.+|+...  ++...   .......|.+...+..  +....++++|.||++|+++|+  ++
T Consensus       215 V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~h~~~N~~aA~--a~  290 (461)
T PRK00421        215 VACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEV--LGDFTLPLPGRHNVLNALAAI--AV  290 (461)
T ss_pred             EEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCce--EEEEEecCCcHHHHHHHHHHH--HH
Confidence            999999998887765556778887532  11110   0001112332211111  112468999999999999999  88


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---C-CcEEEEEc---CCCCCCC
Q 020059          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G-HKCVILLG---GQAKVLN  307 (331)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~-~~~i~V~G---~~~~~g~  307 (331)
                      +..+|++++.|.++|++|++++||||++. ..+++.+|+|+ +|||.++.++++.++   + +|+++|+|   .+.++  
T Consensus       291 ~~~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~k--  366 (461)
T PRK00421        291 ALELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTR--  366 (461)
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHH--
Confidence            99999999999999999999999999996 45678999995 999999998877763   2 68899998   33333  


Q ss_pred             CccCCChh-hhhhhhcceeEEEe
Q 020059          308 GQESNGFE-KLIEPLNHHRCVIT  329 (331)
Q Consensus       308 ~~~~~~~~-~l~~~l~~~~~~i~  329 (331)
                           |+. .++..+...+.+++
T Consensus       367 -----d~~~~~~~~l~~~d~vi~  384 (461)
T PRK00421        367 -----DLLDEFAEALSDADEVIL  384 (461)
T ss_pred             -----HHHHHHHHHHHHCCEEEE
Confidence                 444 46666643444443

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=100.00  E-value=5.9e-52  Score=398.60  Aligned_cols=284  Identities=21%  Similarity=0.260  Sum_probs=222.5

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee-----ecc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-----VGG   76 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~-----~~g   76 (331)
                      .++||+||+++++||++++|+++|+|+++|++++++...+..++|+||||||||||+.||+++|+..|+++.     +.|
T Consensus        61 ~d~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g  140 (448)
T TIGR01081        61 PDLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG  140 (448)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc
Confidence            368999999999999999999999999999999887531234599999999999999999999999998763     567


Q ss_pred             cCcccchhhhhhcccCCCCCCCCcEEEEEecccccccc---Cc--eecccEEEEecCChhhhhccCCHHHHHHHHHHhcc
Q 020059           77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS  151 (331)
Q Consensus        77 ~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~---~~--~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~  151 (331)
                      |+|.|...            .+.+++|+|+|++++...   ..  .++|+++|||||++||+|+|+|+|+|+++|.++++
T Consensus       141 n~G~~~~~------------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~  208 (448)
T TIGR01081       141 NFGVSARL------------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVR  208 (448)
T ss_pred             cCcccccc------------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHH
Confidence            88877531            135889999999876532   11  36999999999999999999999999999999999


Q ss_pred             ccCCCceEEEeCCChhhHHHHhc-cCccEEEeccCCCcccc-cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHH
Q 020059          152 HMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA  229 (331)
Q Consensus       152 ~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA  229 (331)
                      .+++++.+|+|.||+.+..+... ...++.+|+...++... .......|.+...+..  ...+.++++|.||++|+++|
T Consensus       209 ~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A  286 (448)
T TIGR01081       209 TVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMA  286 (448)
T ss_pred             hCCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHH
Confidence            87777899999999988765432 22345566532211100 0001112222212211  11235789999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCC----CcEEEEEcCCC
Q 020059          230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQA  303 (331)
Q Consensus       230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~~~i~V~G~~~  303 (331)
                      +  +++..+|++.+.++++|++|++++||||++. ..++..+|+|+ ||||+|++++++.++.    +|+++|+|+..
T Consensus       287 ~--a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~  360 (448)
T TIGR01081       287 I--AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRS  360 (448)
T ss_pred             H--HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCc
Confidence            9  8899999999999999999999999999995 34678999997 9999999999998852    46799999654

Alternate name: murein tripeptide ligase

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=1.4e-51  Score=400.68  Aligned_cols=310  Identities=28%  Similarity=0.388  Sum_probs=240.3

Q ss_pred             ceeeeeccccccCC----hHHHHHHHcCCeeeeHHHHHHhhCC------CCCcEEEEeCCCChHhHHHHHHHHHHhcCCC
Q 020059            2 WMLWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIE   71 (331)
Q Consensus         2 ~~~~~~~~~~~~~~----p~~~~a~~~g~~~l~~~~~~~~~~~------~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~   71 (331)
                      .++||+||+++++|    |++.+|++.++|++++++++++.+.      .+.++|+||||||||||++||+++|+..|++
T Consensus        70 ~d~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         70 VDLVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             CCEEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence            46899999999998    9999999999999999999877651      1348999999999999999999999999999


Q ss_pred             eeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhcc
Q 020059           72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS  151 (331)
Q Consensus        72 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~  151 (331)
                      +++.||++.+......+...   .....+++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.++++
T Consensus       150 ~~~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~-~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~  225 (498)
T PRK02006        150 VAVAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTH-TLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG  225 (498)
T ss_pred             EEEECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCccc-ccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC
Confidence            99899988664432211111   011237899999999886544 37999999999999999999999999999999997


Q ss_pred             ccCCCceEEEeCCChhhHHHHhcc-CccEEEeccCCC-----cccccccccceEEEecCcee------------------
Q 020059          152 HMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG-----VKIDTEAKTASFEVPAVGVV------------------  207 (331)
Q Consensus       152 ~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------------------  207 (331)
                         +++.+|+|.|||.+..+.... ..++.+||....     +..... ....+.+......                  
T Consensus       226 ---~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (498)
T PRK02006        226 ---PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRD-NGMAWLVEAEDRDAADPAPSRRRKKDAAPPP  301 (498)
T ss_pred             ---CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEec-CCeEEEEecCccccccccccccccccccccc
Confidence               478999999999988776543 235678875321     111000 0000111100000                  


Q ss_pred             -E---E-EEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHH
Q 020059          208 -S---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA  282 (331)
Q Consensus       208 -~---~-~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s  282 (331)
                       +   . ....+++++|.||++|+++|+  +++..+|++.+.++++|++|++++||||++. ..+++.+|||+|+|||+|
T Consensus       302 ~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~-~~~g~~~idDs~~tn~~s  378 (498)
T PRK02006        302 DIRLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVA-TIDGVDYYDDSKGTNVGA  378 (498)
T ss_pred             ccchhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEE-EECCEEEEEcCCCCCHHH
Confidence             0   1 111368999999999999999  8999999999999999999999999999996 357889999999999999


Q ss_pred             HHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhhc-ceeEEEe
Q 020059          283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVIT  329 (331)
Q Consensus       283 ~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~-~~~~~i~  329 (331)
                      +.++++.++ +|+++|+|+|.+.+      +|+++.+.+. ..+.+|+
T Consensus       379 ~~~al~~~~-~~ii~IlGg~~~~~------~~~~~~~~l~~~~~~vi~  419 (498)
T PRK02006        379 TVAALDGLA-QRVVLIAGGDGKGQ------DFSPLAAPVARHARAVVL  419 (498)
T ss_pred             HHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHHHHhCCEEEE
Confidence            999999984 68999999987654      6778887774 3455543

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

Probab=100.00  E-value=1.6e-52  Score=402.44  Aligned_cols=307  Identities=19%  Similarity=0.263  Sum_probs=229.0

Q ss_pred             eeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----Cc
Q 020059            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG   79 (331)
Q Consensus         4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g   79 (331)
                      .+|+++++++++|.+.-  ++....+..++..++.. .+.++|+||||||||||++||+++|+..|.++.+.|+    +|
T Consensus        64 ~vv~~~~~~~~~p~i~v--~d~~~al~~la~~~~~~-~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G  140 (453)
T PRK10773         64 ALLVSRPLDIDLPQLVV--KDTRLAFGQLAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIG  140 (453)
T ss_pred             EEEEecCcCCCCCEEEE--CCHHHHHHHHHHHHHhc-CCCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcc
Confidence            45666666556666541  11112344444444332 2468999999999999999999999999988877777    45


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEeccc---cccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~---~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~  156 (331)
                      .|.+...        ..++++++|+|+|+.   .++.....++|+++|||||++||+|+|||+|+|+++|.++++.++++
T Consensus       141 ~~~~~~~--------~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~  212 (453)
T PRK10773        141 VPLTLLR--------LTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN  212 (453)
T ss_pred             cccHHhc--------CCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCC
Confidence            5544322        135679999999962   33333445899999999999999999999999999999999988888


Q ss_pred             ceEEEeCCChhhHHHHhccCc-cEEEeccCC--Ccccc-----cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHH
Q 020059          157 KLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP--GVKID-----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV  228 (331)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~Nala  228 (331)
                      +.+|+|.|||....+...... ++.+||...  +.++.     .......|.+...+..+   .+.++++|.||++|+++
T Consensus       213 g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~Nala  289 (453)
T PRK10773        213 GIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALA  289 (453)
T ss_pred             CEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHH
Confidence            999999999987766544332 456777532  11111     01111223322211111   24789999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCCCCC
Q 020059          229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL  306 (331)
Q Consensus       229 A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~~~g  306 (331)
                      |+  +++..+|++++.|+++|++|++++||||.+. ..++..||||+|||||+|++++|+.++  ++|+++|+|+|.++|
T Consensus       290 Ai--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~-~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG  366 (453)
T PRK10773        290 AA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQ-LAEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELG  366 (453)
T ss_pred             HH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEE-CCCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence            99  8999999999999999999999999999985 346789999999999999999998874  357899999999999


Q ss_pred             CCccCCChhhhhhhhcc--eeEEE
Q 020059          307 NGQESNGFEKLIEPLNH--HRCVI  328 (331)
Q Consensus       307 ~~~~~~~~~~l~~~l~~--~~~~i  328 (331)
                      +.++.. |+++.+.+..  .+.++
T Consensus       367 ~~~~~~-h~~~~~~~~~~~~d~v~  389 (453)
T PRK10773        367 AESEAC-HRQVGEAAKAAGIDKVL  389 (453)
T ss_pred             hHHHHH-HHHHHHHHHHcCCCEEE
Confidence            988655 8899888853  34444

>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

Probab=100.00  E-value=2.1e-50  Score=384.46  Aligned_cols=272  Identities=23%  Similarity=0.292  Sum_probs=210.4

Q ss_pred             CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--cc
Q 020059           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--IP  114 (331)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~-~~~~~--~~  114 (331)
                      +.++|+||||||||||++||+++|+..|+.+++.|+    +|.|.+...        ...+++++|+|+| ++..+  ..
T Consensus        73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~  144 (417)
T TIGR01143        73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL  144 (417)
T ss_pred             CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence            568999999999999999999999999987777777    555554321        2557899999998 43332  12


Q ss_pred             CceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccC-ccEEEeccCC-Cccc--
Q 020059          115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKI--  190 (331)
Q Consensus       115 ~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~--  190 (331)
                      ...++|+++|||||++||+|+|||+|+|+++|.++++.+++++.+|+|.|||....+..... .++++||... ++..  
T Consensus       145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  224 (417)
T TIGR01143       145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD  224 (417)
T ss_pred             hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence            23479999999999999999999999999999999998888899999999998877765443 4567887532 1110  


Q ss_pred             -cccccc-ceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCc
Q 020059          191 -DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG  268 (331)
Q Consensus       191 -~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~  268 (331)
                       ...... ..|.+...+...   .+.++++|.||++|+++|+  +++..+|+++++|+++|++|++++|||| +. ..++
T Consensus       225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e-~~-~~~~  297 (417)
T TIGR01143       225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFE-IQ-TKNG  297 (417)
T ss_pred             EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCcee-EE-cCCC
Confidence             001111 223332222112   2468999999999999999  8999999999999999999999999999 43 4678


Q ss_pred             EEEEEcCCCCCHHHHHHHHhccCC--CcEEEEEcCCCCCCCCccCCChhhhhhhhcc-e-eEEEe
Q 020059          269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLNH-H-RCVIT  329 (331)
Q Consensus       269 ~~iidD~~a~np~s~~~al~~~~~--~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~-~~~i~  329 (331)
                      ..+|||+|||||+|++++|+.++.  +|+++|+|+|.|+|+++.. .++.+.+.+.+ . +.+|+
T Consensus       298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~~-~~~~l~~~~~~~~~d~vi~  361 (417)
T TIGR01143       298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSEE-LHAEVGRYANSLGIDLVFL  361 (417)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHHH-HHHHHHHHHHHcCCCEEEE
Confidence            999999889999999999998852  5899999999999987743 36677777743 2 45543

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.

>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=4.6e-49  Score=380.80  Aligned_cols=275  Identities=19%  Similarity=0.188  Sum_probs=211.8

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC----cccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--c
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--I  113 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~----g~~~~~~~~~~~~~~~~~~~~~~~VlE~~-~~~~~--~  113 (331)
                      .+.++|+||||||||||++||+++|+..|.++.+.|++    |.|.+...        ...+++++|+|+| ++..+  .
T Consensus       106 ~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~--------~~~~~~~~V~E~g~s~~~e~~~  177 (479)
T PRK14093        106 LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLAR--------CPADARFAVFEIGMNHAGEIEP  177 (479)
T ss_pred             cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHc--------CCCCCcEEEEEeCCCCCchHHH
Confidence            36789999999999999999999999999888777764    44443221        1356789999999 45444  2


Q ss_pred             cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccC----ccEEEeccCCCcc
Q 020059          114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFPGVK  189 (331)
Q Consensus       114 ~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~~~~  189 (331)
                      ....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+.....    .++++||.....+
T Consensus       178 ~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~  257 (479)
T PRK14093        178 LVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKAD  257 (479)
T ss_pred             HhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCcc
Confidence            233579999999999999999999999999999999998888899999999999887754322    2567888542211


Q ss_pred             cc-----cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEee
Q 020059          190 ID-----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR  264 (331)
Q Consensus       190 ~~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~  264 (331)
                      +.     .......+.+...+...   .+.++++|.||++|+++|+  +++..+|++.++|+++|++|++++||+|.+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~  332 (479)
T PRK14093        258 ARLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTL  332 (479)
T ss_pred             EEEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEe
Confidence            11     00111223332222222   2478999999999999999  89999999999999999999999999998742


Q ss_pred             e--cCcEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEEcCCCCCCCCccCCChhhhhhhhc--ceeEEEe
Q 020059          265 D--IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVIT  329 (331)
Q Consensus       265 ~--~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~--~~~~~i~  329 (331)
                      +  .++..||||+|||||+|++++|+.++      ++|+|+|||+|.++|..+... |+++.+.+.  ..+.+++
T Consensus       333 ~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~-h~~~~~~~~~~~~d~v~~  406 (479)
T PRK14093        333 EVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPEL-HRGLAEAIRANAIDLVFC  406 (479)
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHH-HHHHHHHHHHcCCCEEEE
Confidence            2  34589999999999999999998763      358999999999999887544 888988885  3354443

>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.3e-48  Score=368.46  Aligned_cols=269  Identities=24%  Similarity=0.331  Sum_probs=221.4

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEecc---ccccc
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEI  113 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~---~~~~~  113 (331)
                      .+.++|+||||+|||||+.|++++|+..|....+.||    +|.|++....        ..++|++|+|+|.   +.+..
T Consensus       101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~~e~~VlEmG~~~~GeI~~  172 (451)
T COG0770         101 FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PADTEYAVLEMGMNHPGEIAE  172 (451)
T ss_pred             cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCcccEEEEEcCCCCCCcHHH
Confidence            4789999999999999999999999999988877777    5777776654        4568999999995   35555


Q ss_pred             cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhcc-CccEEEeccCC--Ccc-
Q 020059          114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP--GVK-  189 (331)
Q Consensus       114 ~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~--~~~-  189 (331)
                      +..+.+|+++|||||+.+|+++|||.|.++++|.+|+..+++++.+|+|.|++......... ..++++||...  ++. 
T Consensus       173 l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~  252 (451)
T COG0770         173 LSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRA  252 (451)
T ss_pred             HhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCCCceee
Confidence            66668999999999999999999999999999999999999999999999999977766553 45788888541  111 


Q ss_pred             --cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecC
Q 020059          190 --IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ  267 (331)
Q Consensus       190 --~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~  267 (331)
                        +..+.....|.+...+.+..   +.+|++|+||+.|+++|+  ++++.+|++.++|+++|+.+++++||+|.+. ..+
T Consensus       253 ~~i~~~~~~~~f~~~~~~~~~~---~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~-~~~  326 (451)
T COG0770         253 TNIHLDEEGSSFTLDIEGGEAE---FELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGLKELKPVKGRLEVIL-LAN  326 (451)
T ss_pred             EEEEEcCCceEEEEEecCceEE---EEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCccceeEe-cCC
Confidence              11122224444443333332   579999999999999999  8999999999999999999999999999543 578


Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcce
Q 020059          268 GVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH  324 (331)
Q Consensus       268 ~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~  324 (331)
                      +.++|||+||.||+||.++++.+   +.++.|+|+|+|.|+|++++.. |.++.+.+...
T Consensus       327 g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~-H~~v~~~~~~~  385 (451)
T COG0770         327 GKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEEL-HEEVGEYAVEA  385 (451)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHHH-HHHHHHHHHhc
Confidence            89999999999999999998876   3444499999999999887555 99999998653

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=100.00  E-value=3.1e-48  Score=396.16  Aligned_cols=301  Identities=15%  Similarity=0.184  Sum_probs=229.1

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCC--eeecccCc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLG   79 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~--~~~~g~~g   79 (331)
                      .++||+||+++++||++++|+++|+|+++++++++++. +..++|+||||||||||++||+++|+..|+.  +.++|++|
T Consensus        64 ~d~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g  142 (809)
T PRK14573         64 DAVVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQ  142 (809)
T ss_pred             CCEEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccc
Confidence            36899999999999999999999999999999999887 3558999999999999999999999999975  45788888


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCce
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKL  158 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~  158 (331)
                      .|....          ..+.+++|+|+|+++ ... ..++|+++|||||++||+|+| +|+|+|+++|..+++.+++++.
T Consensus       143 ~~~~~~----------~~~~d~~V~E~ss~~-~~~-~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~  210 (809)
T PRK14573        143 EGLNGY----------SGSSEYFVAEADESD-GSL-KHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINK  210 (809)
T ss_pred             cccccc----------cCCCCEEEEECCCCc-chh-heeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCE
Confidence            765532          123689999999986 322 258999999999999999988 7999999999999887777889


Q ss_pred             EEEeCCChhhHHHHhccCccEEEeccCCCccc-----ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059          159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV  233 (331)
Q Consensus       159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a  233 (331)
                      +|+|.||+......     +..+|+......+     ..+.....|.+...+.  .+....++++|.||++|+++|+  +
T Consensus       211 ~V~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a  281 (809)
T PRK14573        211 CFYNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--G  281 (809)
T ss_pred             EEEeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--H
Confidence            99999999765422     1234553211111     0011111233222221  1123468899999999999999  8


Q ss_pred             HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCc
Q 020059          234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQ  309 (331)
Q Consensus       234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~  309 (331)
                      ++..+|++.+.|+++|++|++++||||++. ..+++.+|+| |||||++++++++.++    .+|+++||+......-  
T Consensus       282 ~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D-~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~--  357 (809)
T PRK14573        282 IALTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLED-YAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRL--  357 (809)
T ss_pred             HHHHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhH--
Confidence            899999999999999999999999999996 3567889999 5999999999988873    3678899964433321  


Q ss_pred             cCCChhhhhhhhcceeEEEe
Q 020059          310 ESNGFEKLIEPLNHHRCVIT  329 (331)
Q Consensus       310 ~~~~~~~l~~~l~~~~~~i~  329 (331)
                       ..++.+++..+...+.+++
T Consensus       358 -~~~~~~~~~~l~~~d~vil  376 (809)
T PRK14573        358 -RECLDSFPSAFQDADEVIL  376 (809)
T ss_pred             -HHHHHHHHHHHHHCCEEEE
Confidence             1134444455554555544

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=5.8e-48  Score=363.56  Aligned_cols=269  Identities=25%  Similarity=0.361  Sum_probs=216.7

Q ss_pred             eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccc
Q 020059            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (331)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~   82 (331)
                      ++||+||+++++||++++|++    ++++++++.+..   .++|+||||||||||++||+++|+..|..  .+||+|.|+
T Consensus        56 d~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~  126 (401)
T PRK03815         56 DLEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPL  126 (401)
T ss_pred             CEEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhH
Confidence            689999999999999999988    689999988765   25999999999999999999999999843  578999987


Q ss_pred             hhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEe
Q 020059           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (331)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (331)
                      ..  .        ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|.++|.+|++.+++++.+|+|
T Consensus       127 ~~--~--------~~~~~~~V~E~ss~~~~~~~-~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n  195 (401)
T PRK03815        127 AE--L--------DKNAKIWVLETSSFTLHYTN-KAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILP  195 (401)
T ss_pred             Hh--c--------CCCCCEEEEECChHHhhCCc-cCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEe
Confidence            65  2        23458999999988765544 3799999999999999999999999999999999999889999999


Q ss_pred             CCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCH
Q 020059          163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV  242 (331)
Q Consensus       163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~  242 (331)
                      .||+...     ...++++||...+.      . ..+.+..         ..+.+.+. |++|+++|+  +++..+|+  
T Consensus       196 ~dd~~~~-----~~~~~~~fg~~~~~------~-~~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~--  249 (401)
T PRK03815        196 KKFKNTP-----TKAQKIFYEDEEDL------A-EKFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD--  249 (401)
T ss_pred             ccccccc-----cCCcEEEEecCCcc------c-cceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--
Confidence            9998642     12356677632110      0 0111111         12334455 499999999  89999994  


Q ss_pred             HHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhhc
Q 020059          243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (331)
Q Consensus       243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~  322 (331)
                      +.+.++|++|+++++|||++. ..+++.+|||+|++||+|+.++|+.++.+|+++|+|+..+.      .+|.++.+.++
T Consensus       250 ~~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~------~~~~~l~~~~~  322 (401)
T PRK03815        250 ELDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKG------VDLTPLFEFMK  322 (401)
T ss_pred             HHHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHHHH
Confidence            556678999999999999996 46889999999999999999999999656789999975443      26788888885


Q ss_pred             ce
Q 020059          323 HH  324 (331)
Q Consensus       323 ~~  324 (331)
                      ..
T Consensus       323 ~~  324 (401)
T PRK03815        323 NL  324 (401)
T ss_pred             hh
Confidence            43

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=100.00  E-value=2e-46  Score=361.05  Aligned_cols=261  Identities=25%  Similarity=0.310  Sum_probs=199.7

Q ss_pred             CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCCC-----------CCCCCcEEEEEeccc
Q 020059           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSSY  109 (331)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~VlE~~~~  109 (331)
                      +.++|+||||||||||++||+++|++.|+++++.||++.++.....+. .+++.           .+.+++++|+|+|++
T Consensus        94 ~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~  173 (460)
T PRK00139         94 KLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSH  173 (460)
T ss_pred             ccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchh
Confidence            678999999999999999999999999999999999887765422110 11110           145789999999987


Q ss_pred             cccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccC-CC
Q 020059          110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-PG  187 (331)
Q Consensus       110 ~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~-~~  187 (331)
                      +++..+. .++|+++|||||+.||+++|||+|+|+++|.+|++..  .+.+|+|.||+....+...    ..+|+.. ..
T Consensus       174 ~~~~~~l~~~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~--~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~  247 (460)
T PRK00139        174 ALDQGRVDGLKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSEL--GLAAVINADDEVGRRLLAL----PDAYAVSMAG  247 (460)
T ss_pred             hHhhchhcCCcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcC--CCeEEEEcCcHhHHHHHhh----cEEEEecCCC
Confidence            7643221 2789999999999999999999999999999999864  2489999999988766542    3445532 11


Q ss_pred             cccccccccceEEEecCceeEEEE-eecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeec
Q 020059          188 VKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI  266 (331)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~  266 (331)
                      .    +.....+.....+..+.+. .+.++++|+||++|+++|+  +++..+|+++++|+++|++|++++||||++. ..
T Consensus       248 ~----~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~  320 (460)
T PRK00139        248 A----DLRATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVD-AG  320 (460)
T ss_pred             C----cEEEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEE-cC
Confidence            1    1111122222233334332 3578999999999999999  8999999999999999999999999999995 24


Q ss_pred             CcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059          267 QGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (331)
Q Consensus       267 ~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l  321 (331)
                      ++..+|+| |||||+|++++++.+.   ++|+++|+|+..++..     ++++++..+
T Consensus       321 ~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~~-----~~~~~~~~~  372 (460)
T PRK00139        321 QGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDK-----GKRPLMGAI  372 (460)
T ss_pred             CCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCch-----hhhHHHHHH
Confidence            67899999 6999999999999885   3689999998555532     566776665

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.9e-46  Score=354.45  Aligned_cols=279  Identities=25%  Similarity=0.386  Sum_probs=215.4

Q ss_pred             eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC-CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      +++|.+++++++||.+++|+++|++++++.+.+.+... .+.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus        61 dlvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p  140 (418)
T PRK00683         61 DLVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP  140 (418)
T ss_pred             CEEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH
Confidence            68999999999999999999999999999988665421 25689999999999999999999999999999999999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL  160 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v  160 (331)
                      +...          ..+.+++|+|+|++++..... ...|+++|||||++||+|+|+|+|+|+++|.+++..+..     
T Consensus       141 ~l~~----------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~-----  205 (418)
T PRK00683        141 ILDG----------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRN-----  205 (418)
T ss_pred             HHHH----------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhC-----
Confidence            7332          123578999999998765333 223489999999999999999999999999999975432     


Q ss_pred             EeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH-cC
Q 020059          161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IG  239 (331)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~-lg  239 (331)
                        .|+....        ...+|+..  .  ....... +.....+       ..++++|.||++|+++|+  +++.. +|
T Consensus       206 --~~~~~~~--------~~~~~~~~--~--~~~~~~~-~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g  261 (418)
T PRK00683        206 --PDDLWVG--------DERSYGHS--Y--LEYVQEI-MRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFP  261 (418)
T ss_pred             --ccccccc--------ccCCcCce--e--ecCcchh-hhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcC
Confidence              2222110        01122211  0  0000000 0000011       246789999999999999  88888 69


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhh
Q 020059          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE  319 (331)
Q Consensus       240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~  319 (331)
                      ++.++++++|++|++++||||++. ..++..+|||+||+||+|+.++++.++ +|+++|+|+|.+.+      ||.++.+
T Consensus       262 ~~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~------d~~~l~~  333 (418)
T PRK00683        262 ISEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGC------DFSSLLP  333 (418)
T ss_pred             CCHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHH
Confidence            999999999999999999999996 357899999999999999999999874 58999999988876      4667777


Q ss_pred             hhcc-eeEEE
Q 020059          320 PLNH-HRCVI  328 (331)
Q Consensus       320 ~l~~-~~~~i  328 (331)
                      .+.+ .+.++
T Consensus       334 ~~~~~~~~v~  343 (418)
T PRK00683        334 VLRQTAKHVV  343 (418)
T ss_pred             HHHHhCCEEE
Confidence            7754 34444

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=7.7e-46  Score=385.79  Aligned_cols=273  Identities=19%  Similarity=0.242  Sum_probs=208.9

Q ss_pred             CCcEEEEeCCCChHhHHHHHHHHHHhc---CCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEeccc---cc
Q 020059           42 SIKILAVTGTNGKSTVVTFVGQMLNHL---GIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QM  111 (331)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~---g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~---~~  111 (331)
                      +.++|+||||||||||++||+++|+..   +....+.|+    +|.|.+...        ...+.+++|+|+|++   ++
T Consensus       602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~--------~~~~~~~~VlE~s~~~~g~~  673 (958)
T PRK11929        602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLR--------LRAQHRAAVFELGMNHPGEI  673 (958)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhc--------CCCCCcEEEEEeCCCCCccH
Confidence            568999999999999999999999998   444556666    455544322        145678999999975   44


Q ss_pred             cccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhcc-CccEEEeccCCCccc
Q 020059          112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKI  190 (331)
Q Consensus       112 ~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~  190 (331)
                      +.....++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.||+....+.... ..++.+||......+
T Consensus       674 ~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~  753 (958)
T PRK11929        674 AYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADV  753 (958)
T ss_pred             HHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcce
Confidence            4443446999999999999999999999999999999999888889999999999987765433 235677875321111


Q ss_pred             c-----cc-----cccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee
Q 020059          191 D-----TE-----AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ  260 (331)
Q Consensus       191 ~-----~~-----~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e  260 (331)
                      .     .+     .....+.+...+...   .+.++++|.||++|+++|+  +++..+|++.++++++|++|+++|||||
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e  828 (958)
T PRK11929        754 YAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRMQ  828 (958)
T ss_pred             EeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCce
Confidence            0     00     011122222111111   2468999999999999999  8999999999999999999999999999


Q ss_pred             EEeeecCcEEEEEcCCCCCHHHHHHHHhccCC---CcEEEEEcCCCCCCCCccCCChhhhhhhhcc--eeEEEe
Q 020059          261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVIT  329 (331)
Q Consensus       261 ~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~--~~~~i~  329 (331)
                      ++. ..++..+|||+|||||+|++++|+.++.   +|+++|+|+|.++|+++.+. |+++.+.+.+  .+.+++
T Consensus       829 ~~~-~~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~~-h~~~g~~~~~~~~~~vi~  900 (958)
T PRK11929        829 RRR-LSCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPAM-HREVGKYARQLGIDALIT  900 (958)
T ss_pred             EEE-cCCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHHH-HHHHHHHHHHcCCCEEEE
Confidence            996 3578899999889999999999998852   68999999999999877433 5666666633  355554

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=100.00  E-value=2.5e-45  Score=354.28  Aligned_cols=275  Identities=24%  Similarity=0.327  Sum_probs=200.8

Q ss_pred             CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhh---h-cccCC-----------CCCCCCcEEEEEe
Q 020059           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF---H-CIALP-----------SSKPKFQVAVVEV  106 (331)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~---~-~~~~~-----------~~~~~~~~~VlE~  106 (331)
                      +.++|+||||||||||++||+++|+..|+++++.|+.|.+......   . ..+++           ..+.+.+++|+|+
T Consensus        84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~  163 (464)
T TIGR01085        84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV  163 (464)
T ss_pred             ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5789999999999999999999999999998877777765332110   0 00110           1134679999999


Q ss_pred             ccccccc--cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEecc
Q 020059          107 SSYQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA  184 (331)
Q Consensus       107 ~~~~~~~--~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~  184 (331)
                      |+++++.  ... ++|+++|||||++||+++|||+|+|+++|.++++.++++|.+|+|.|||....+.......+.++..
T Consensus       164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~  242 (464)
T TIGR01085       164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI  242 (464)
T ss_pred             cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence            9876543  333 7999999999999999999999999999999999887788999999999987776543332222221


Q ss_pred             CC-----Cccccc-c----cccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 020059          185 FP-----GVKIDT-E----AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR  253 (331)
Q Consensus       185 ~~-----~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg-~~~~~i~~~l~~~~  253 (331)
                      ..     ..++.. +    .....|.+...+...   .+.++++|.||++|+++|+  |++..+| ++.+.|+++|++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~  317 (464)
T TIGR01085       243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR  317 (464)
T ss_pred             cCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence            11     001100 0    011122222211111   2468999999999999999  8899998 99999999999999


Q ss_pred             CCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc--eeEEE
Q 020059          254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVI  328 (331)
Q Consensus       254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~--~~~~i  328 (331)
                      +++||||++. ..++..+|+| |||||+|++++++.+.   .+|+++|+|...++.     ..|++++..+..  .+.++
T Consensus       318 ~~~gR~e~~~-~~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~~-----~~~~~~~~~~~~~~~d~vi  390 (464)
T TIGR01085       318 GVPGRMELVD-GGQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRD-----RGKRPLMGAIAEQLADLVI  390 (464)
T ss_pred             CCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCCC-----cchhHHHHHHHHhcCCEEE
Confidence            9999999995 3457899999 6999999999999884   368899999333331     247788877743  24444


Q ss_pred             e
Q 020059          329 T  329 (331)
Q Consensus       329 ~  329 (331)
                      +
T Consensus       391 ~  391 (464)
T TIGR01085       391 L  391 (464)
T ss_pred             E
Confidence            3

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

Probab=100.00  E-value=2.8e-45  Score=354.97  Aligned_cols=264  Identities=23%  Similarity=0.283  Sum_probs=192.1

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcc-------------cchhhhhhcccCCCCCCCCcEEEEEec
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-------------PLSEAAFHCIALPSSKPKFQVAVVEVS  107 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~-------------~~~~~~~~~~~~~~~~~~~~~~VlE~~  107 (331)
                      .+.++|+||||||||||++||+++|+..|.++++.|+.|.             |.....++.. ....+.+.+++|||+|
T Consensus       108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~-~~~~e~g~~~~v~Evs  186 (481)
T PRK14022        108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMM-AEAVDNGMTHLIMEVS  186 (481)
T ss_pred             hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHH-HHHHHCCCCEEEEEec
Confidence            4678999999999999999999999999988877766443             3211111000 0012346789999999


Q ss_pred             cccccccCc-eecccEEEEecCChhhhhc--cCCHHHHHHHHHHhccccCCCceEEEeCC-ChhhHHHHhccCccEEEec
Q 020059          108 SYQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIG  183 (331)
Q Consensus       108 ~~~~~~~~~-~~~p~i~viTni~~dHl~~--~gt~e~~~~~K~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~~  183 (331)
                      |+++...+. .++|+++|||||++||+++  |+|+|+|+++|.+|++   +++.+|+|.| |+...........++.+||
T Consensus       187 S~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~g  263 (481)
T PRK14022        187 SQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFYG  263 (481)
T ss_pred             hhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEEe
Confidence            986543322 3689999999999999999  8999999999999996   4678999998 5553322222223567777


Q ss_pred             cCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEe
Q 020059          184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH  263 (331)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~  263 (331)
                      ......+...   ..|.+...+..  ...+.++++|.||++|+++|+  +++..+|++++.|+++|++ +++|||||++.
T Consensus       264 ~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i~  335 (481)
T PRK14022        264 IDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVLT  335 (481)
T ss_pred             cCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEEE
Confidence            5422111100   02333211110  011356799999999999999  8899999999999999999 88999999995


Q ss_pred             eecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhhc
Q 020059          264 RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (331)
Q Consensus       264 ~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~  322 (331)
                       ..+++.+|+| |||||+|++++++.++   ++|+++|+|+|.++|...    +.++.+.+.
T Consensus       336 -~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~----~~~~~~~~~  391 (481)
T PRK14022        336 -QSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESR----RPDFGRVAN  391 (481)
T ss_pred             -CCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcch----hHHHHHHHH
Confidence             3467889999 6999999999998874   468999999999998644    344555553

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

Probab=100.00  E-value=6.3e-45  Score=372.70  Aligned_cols=271  Identities=17%  Similarity=0.220  Sum_probs=207.5

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecc----cCcccchhhhhhcccCCCCCCCCcEEEEEecccc-ccc--
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG----NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEI--  113 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g----~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~-~~~--  113 (331)
                      .+.++|+||||||||||+.||+++|+..|.++.+.+    ++|.|.+...        ..++.+++|+|+|+++ .+.  
T Consensus       105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~--------~~~~~~~~V~E~s~s~~~~~~~  176 (822)
T PRK11930        105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQ--------LNEEHELGIFEAGISQPGEMEA  176 (822)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhc--------CCCCCcEEEEEeCCCCCChHHH
Confidence            467899999999999999999999999887665544    3566665322        1356789999999543 232  


Q ss_pred             cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhcc--CccEEEeccCC-Cccc
Q 020059          114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP-GVKI  190 (331)
Q Consensus       114 ~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~-~~~~  190 (331)
                      ....++|+++|||||+.||+|+|+|+|+|+++|.++++.   .+.+|+|.||+....+....  ..++.+||... ..++
T Consensus       177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~  253 (822)
T PRK11930        177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL  253 (822)
T ss_pred             HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence            223478999999999999999999999999999999984   47899999999987755322  23567777532 1111


Q ss_pred             --c---cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeee
Q 020059          191 --D---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD  265 (331)
Q Consensus       191 --~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~  265 (331)
                        .   .......+.+...+...   .+.++++|+||++|+++|+  +++..+|++.+++.++|++|++++||||++. .
T Consensus       254 ~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~-~  327 (822)
T PRK11930        254 YIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKE-G  327 (822)
T ss_pred             EEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEE-c
Confidence              0   01111223332222211   2478999999999999999  8899999999999999999999999999996 3


Q ss_pred             cCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc--eeEEEe
Q 020059          266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVIT  329 (331)
Q Consensus       266 ~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~--~~~~i~  329 (331)
                      .+++.+|||+|||||+|++++|+.++    ++++++|+|+|.++|+.+.. .|.++.+.+..  .+.+|+
T Consensus       328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~-~~~~l~~~l~~~~i~~vi~  396 (822)
T PRK11930        328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEE-LYRKVAQLISKRGIDRLIG  396 (822)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHH-HHHHHHHHHHHcCCCEEEE
Confidence            57899999999999999999999885    25789999999999876633 48889888853  345543

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=2.4e-44  Score=374.61  Aligned_cols=271  Identities=23%  Similarity=0.285  Sum_probs=205.7

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCC-----------CCCCCCcEEEEEecc
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSS  108 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~VlE~~~  108 (331)
                      .+.++|+||||||||||++||+++|+..|+++++.|++|.++....+.. .+++           ..+.+++++|+|+|+
T Consensus       110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss  189 (958)
T PRK11929        110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS  189 (958)
T ss_pred             hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            3678999999999999999999999999999999999888654322211 1111           114578999999998


Q ss_pred             ccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccC--ccEEEeccC
Q 020059          109 YQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--FNLAWIGAF  185 (331)
Q Consensus       109 ~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~--~~~~~~~~~  185 (331)
                      ++++..+. .++|+++|||||++||+++|||+|+|+++|++|++.+++++.+|+|.|||....+.....  ..+.+++..
T Consensus       190 ~~l~~~rl~~~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~  269 (958)
T PRK11929        190 HGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQN  269 (958)
T ss_pred             chHhhCcccccccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeC
Confidence            87753332 268999999999999999999999999999999998888899999999999887765432  133444422


Q ss_pred             C--Cccc---ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee
Q 020059          186 P--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ  260 (331)
Q Consensus       186 ~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e  260 (331)
                      .  ++..   ........|.+...+....   +.++++|.||++|+++|+  +++..+|+++++|+++|++|+++|||||
T Consensus       270 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~e  344 (958)
T PRK11929        270 AGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRME  344 (958)
T ss_pred             CCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCcE
Confidence            1  1111   0011122233332222222   368999999999999999  8999999999999999999999999999


Q ss_pred             EEe--eecCcEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEEcCCCCCCCCccCCChhhhhhhhc
Q 020059          261 IVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN  322 (331)
Q Consensus       261 ~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~  322 (331)
                      ++.  ...++..+|+| |||||+|++++++.++      .+|+++|+|+..+++.     ++++++..+.
T Consensus       345 ~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~~-----~~~~~~~~~~  408 (958)
T PRK11929        345 RVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRDK-----GKRPEMGRIA  408 (958)
T ss_pred             EeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCCc-----chhHHHHHHH
Confidence            983  12357788889 5999999999998875      2678999997766632     6788887773

>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase

Probab=100.00  E-value=1.6e-43  Score=335.23  Aligned_cols=271  Identities=20%  Similarity=0.250  Sum_probs=196.2

Q ss_pred             HHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhhc------
Q 020059           31 ELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC------   89 (331)
Q Consensus        31 ~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~------   89 (331)
                      |+..+.+.+.   ++.++||||||||||||++||+++|++.|+++++.++.            |.+++...+..      
T Consensus         3 r~~~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~   82 (397)
T TIGR01499         3 RMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVR   82 (397)
T ss_pred             HHHHHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHH
Confidence            4444444431   35689999999999999999999999999999777663            33333311100      


Q ss_pred             --c-c---CC-------------CCCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhhhccC-CHHHHHHHHHH
Q 020059           90 --I-A---LP-------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCH  148 (331)
Q Consensus        90 --~-~---~~-------------~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~~  148 (331)
                        . .   ++             +.+.++|++|||+|.+ .++.++ .++|+++|||||+.||+++|| |+|+|+++|++
T Consensus        83 ~~~~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn-~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~  161 (397)
T TIGR01499        83 PILEKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATN-VIEPLVSVITSIGLDHTEILGDTLEEIAWEKAG  161 (397)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccc-ccCCCeEEEccccHHHHHHhCccHHHHHHHHhC
Confidence              0 0   11             2257899999999975 456554 478999999999999999999 99999999999


Q ss_pred             hccccCCCceEEEeCCChhhHHHHhc----cCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHH
Q 020059          149 LFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH  224 (331)
Q Consensus       149 i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~  224 (331)
                      |++   +++.+|+|.||+....+...    ...++.+++.+  +.+.. .....+.+.....  ....+.++++|.||++
T Consensus       162 I~k---~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~  233 (397)
T TIGR01499       162 IIK---EGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSE-TDENYLSFSGANL--FLEPLALSLLGDHQAE  233 (397)
T ss_pred             ccC---CCCCEEEcCCChHHHHHHHHHHHHcCCCEEEeccc--eeecc-cccceEEeecccc--cccccCCCCCCHHHHH
Confidence            998   46789999999887655322    23345555532  11110 0011233321111  0112367899999999


Q ss_pred             HHHHHHHHHHHHHcCC-----CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcE
Q 020059          225 NAAVAALSVLGLDIGV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKC  295 (331)
Q Consensus       225 NalaA~~~a~~~~lg~-----~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~  295 (331)
                      |+++|+  +++..+|.     +.+.|+++|+++. +|||||++.  .++..+|.|+ ||||+|++++++.++    .+++
T Consensus       234 N~~~Ai--aa~~~lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD~-AHNp~a~~~~l~~l~~~~~~~~i  307 (397)
T TIGR01499       234 NAALAL--AALEVLGKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLDG-AHNPHSAEALAEWFKKRFNGRPI  307 (397)
T ss_pred             HHHHHH--HHHHHHHhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEEC-CCCHHHHHHHHHHHHHhcCCCCe
Confidence            999999  78888875     5899999999998 599999995  3356676775 999999999998874    2478


Q ss_pred             EEEEcCCCCCCCCccCCChhhhhhhhcc
Q 020059          296 VILLGGQAKVLNGQESNGFEKLIEPLNH  323 (331)
Q Consensus       296 i~V~G~~~~~g~~~~~~~~~~l~~~l~~  323 (331)
                      ++|+|+++++       |+.++...+.+
T Consensus       308 ~~V~G~~~dk-------d~~~~~~~l~~  328 (397)
T TIGR01499       308 ILLFGALADK-------DAAAMLAPLKP  328 (397)
T ss_pred             EEEEEeeCCC-------CHHHHHHHHhh
Confidence            8999999887       78898888754

A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.6e-42  Score=329.22  Aligned_cols=278  Identities=25%  Similarity=0.334  Sum_probs=215.5

Q ss_pred             CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccch-hhhhh-cccCC-----------CCCCCCcEEEEEecc
Q 020059           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS-EAAFH-CIALP-----------SSKPKFQVAVVEVSS  108 (331)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~-~~~~~-~~~~~-----------~~~~~~~~~VlE~~~  108 (331)
                      +.++|+||||||||||++++.++++..|+++++.|+.|..++ ..... ..++|           ..+...++++||+++
T Consensus        90 ~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvss  169 (475)
T COG0769          90 KLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSS  169 (475)
T ss_pred             CceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEeeh
Confidence            589999999999999999999999999999988888776553 11111 12333           125678999999999


Q ss_pred             ccccccCce-ecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHH---HhccCccEEEecc
Q 020059          109 YQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIGA  184 (331)
Q Consensus       109 ~~~~~~~~~-~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~---~~~~~~~~~~~~~  184 (331)
                      +++.+.+.. ...+++++||++.||+|+|+|+|+|+.+|..+|+.+++.+..|+|.||++...+   ......+.+++|.
T Consensus       170 h~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~~  249 (475)
T COG0769         170 HGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGC  249 (475)
T ss_pred             hHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeCC
Confidence            998776664 367999999999999999999999999999999866778899999999998443   3333335677776


Q ss_pred             CCCcc------cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 020059          185 FPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR  258 (331)
Q Consensus       185 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR  258 (331)
                      .....      ++.......+.+...+...   .+++|++|.||++|+|+|+  +++..+|+|+++|+++++++++++||
T Consensus       250 ~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~---~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~GR  324 (475)
T COG0769         250 DFKRPDLDYRGIEESSSGSDFVFEPSGGIG---EYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPGR  324 (475)
T ss_pred             CCchhhhhhccceeeeccceeEEEccCCce---eEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCCc
Confidence            54311      1111111222222222222   3479999999999999999  88999999999999999999999999


Q ss_pred             eeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhhcceeEEEe
Q 020059          259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVIT  329 (331)
Q Consensus       259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~~~~i~  329 (331)
                      ||.+.  .++..++.| |||||++++++|+.++   .+|+++|+|+.++. |.+++.+...++..+.+. ++||
T Consensus       325 mE~v~--~~~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG~gGDr-D~~kr~~mg~ia~~~ad~-vivt  393 (475)
T COG0769         325 MELVN--IGGKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDR-DKSKRPDMGAIAEQLADI-VIVT  393 (475)
T ss_pred             ceEec--CCCCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEECccCCC-CcccccchHHHHHhcCCc-EEEc
Confidence            99996  347777778 5999999999998875   47899999999998 778777777777776653 4443

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=100.00  E-value=1.5e-40  Score=339.41  Aligned_cols=280  Identities=19%  Similarity=0.212  Sum_probs=204.8

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc--ccCC------CCCCCCcEEEEEecccccc
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--IALP------SSKPKFQVAVVEVSSYQME  112 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~--~~~~------~~~~~~~~~VlE~~~~~~~  112 (331)
                      .+.|+|+||||||||||++||+++|+..|+++++.++.|..+.....+.  .+.+      ..++++|++|+|++++++.
T Consensus       477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil  556 (864)
T TIGR02068       477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL  556 (864)
T ss_pred             CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence            4578999999999999999999999999999987666554433221100  0000      1356789999999998864


Q ss_pred             cc-CceecccEEEEecCChhhhhcc--CCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCCcc
Q 020059          113 IP-NKYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK  189 (331)
Q Consensus       113 ~~-~~~~~p~i~viTni~~dHl~~~--gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~  189 (331)
                      .. ....+|+++|||||+.||++++  +|+|+|+++|+.+++.+++++.+|+|+|||.+..++.....++++|+.+.+..
T Consensus       557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~  636 (864)
T TIGR02068       557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP  636 (864)
T ss_pred             hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence            43 3345899999999999999864  69999999999999988889999999999999888776666788887543211


Q ss_pred             c-----cccccc-----ceEEEecCceeE---EEEeecCCCCc--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 020059          190 I-----DTEAKT-----ASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (331)
Q Consensus       190 ~-----~~~~~~-----~~~~~~~~~~~~---~~~~~~l~l~G--~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~  254 (331)
                      .     ..+...     ..+.....+...   ....+.+++.|  .||++|+++|+  ++++.+|++.+.|+++|++|++
T Consensus       637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~  714 (864)
T TIGR02068       637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA  714 (864)
T ss_pred             HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence            1     001000     001111111111   11122344445  89999999999  8899999999999999999986


Q ss_pred             ----CCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeE
Q 020059          255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRC  326 (331)
Q Consensus       255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~  326 (331)
                          .|||||++.  .++..+|+|| ||||+|++++++.+   +.+|+++|+|+++++.+    .++.++.+.+.+ .+.
T Consensus       715 ~~~~~pGR~e~~~--~~g~~vI~Dy-AHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~----~~~~~lg~~l~~~~d~  787 (864)
T TIGR02068       715 DAAQAPGRFNLFN--LGGAHVLVDY-GHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRD----EDLVEQGELLGGAFDQ  787 (864)
T ss_pred             cccCCCCceEEEE--eCCcEEEEEc-CCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCCh----hHHHHHHHHHHHhCCE
Confidence                899999984  4678899994 99999999776665   34678999999977643    357777777754 344


Q ss_pred             EEe
Q 020059          327 VIT  329 (331)
Q Consensus       327 ~i~  329 (331)
                      +|+
T Consensus       788 vil  790 (864)
T TIGR02068       788 IIL  790 (864)
T ss_pred             EEE
Confidence            443

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>PLN02913 dihydrofolate synthetase

Probab=100.00  E-value=3.3e-40  Score=319.29  Aligned_cols=286  Identities=16%  Similarity=0.191  Sum_probs=198.2

Q ss_pred             eeHHHHHHhhC--C-CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------C--cccchhhhhhc--
Q 020059           29 MSELDFAAQVI--P-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------L--GNPLSEAAFHC--   89 (331)
Q Consensus        29 l~~~~~~~~~~--~-~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~--g~~~~~~~~~~--   89 (331)
                      |.|+..+.+.+  | ++.++|+||||||||||++||+++|+++|++++++.+            .  |.|++...+..  
T Consensus        58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~  137 (510)
T PLN02913         58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF  137 (510)
T ss_pred             HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence            56677666655  2 3568999999999999999999999999999976654            2  45555443210  


Q ss_pred             ---------c-------cCC-----------CCCCCCcEEEEEeccc-cccccCce--ecccEEEEecCChhhhhccC-C
Q 020059           90 ---------I-------ALP-----------SSKPKFQVAVVEVSSY-QMEIPNKY--FCPTVSVVLNLTPDHLERHK-T  138 (331)
Q Consensus        90 ---------~-------~~~-----------~~~~~~~~~VlE~~~~-~~~~~~~~--~~p~i~viTni~~dHl~~~g-t  138 (331)
                               .       .+.           +.+.++|++|+|+|.| .+|.++..  ..|+++|||||+.||++++| |
T Consensus       138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~T  217 (510)
T PLN02913        138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGS  217 (510)
T ss_pred             HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhccc
Confidence                     0       000           2357899999999976 46776653  23599999999999999999 9


Q ss_pred             HHHHHHHHHHhccccCCCceEEEeC-CChhhHHH----HhccCccEEEeccCCCccccc---c-cccceEEEec-----C
Q 020059          139 MKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEA----IKGHRFNLAWIGAFPGVKIDT---E-AKTASFEVPA-----V  204 (331)
Q Consensus       139 ~e~~~~~K~~i~~~~~~~~~~v~n~-dd~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~-----~  204 (331)
                      +|+|+++|++|++   ++..+|++. ..+....+    +.....++.+++.. ++.+..   . .....+.+..     .
T Consensus       218 le~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (510)
T PLN02913        218 LESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDP-GVRSSIKGIITDNGKPCQSCDIVIRVE  293 (510)
T ss_pred             HHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccc-cccceeecccccCCceeEEeccccccc
Confidence            9999999999998   577788875 33444333    23334555555321 111100   0 0111122110     0


Q ss_pred             c---eeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCceeEEeee------cCcEE
Q 020059          205 G---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVT  270 (331)
Q Consensus       205 ~---~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l-----g~~~~~i~~~l~~~~~~~gR~e~~~~~------~~~~~  270 (331)
                      +   .......+.++++|.||++|+++|+  +++..+     +++.+.|+++|++++| |||||++...      ..+..
T Consensus       294 ~~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~~~~~~~~~~~~~~  370 (510)
T PLN02913        294 KDDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLTSKEAEVLGLPGAT  370 (510)
T ss_pred             cccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEeeccccccccCCCCE
Confidence            0   0001112468899999999999999  677776     7999999999999997 7999998411      12457


Q ss_pred             EEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc---eeEEEe
Q 020059          271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH---HRCVIT  329 (331)
Q Consensus       271 iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~---~~~~i~  329 (331)
                      ||+|+ +|||+|++++++.+.    .+|+++|+|.+.++       |+.++++.+.+   .+.+++
T Consensus       371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK-------d~~~~l~~l~~~~~~d~v~~  428 (510)
T PLN02913        371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK-------DHLAFASEFLSGLKPEAVFL  428 (510)
T ss_pred             EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC-------CHHHHHHHHhcccCCCEEEE
Confidence            88896 799999999988763    35788888988777       89999986633   344444

>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]

Probab=100.00  E-value=6.2e-40  Score=305.94  Aligned_cols=271  Identities=21%  Similarity=0.237  Sum_probs=196.2

Q ss_pred             eeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhhhc----
Q 020059           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC----   89 (331)
Q Consensus        29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~----   89 (331)
                      |.|+..+.+.+.   +..++|+|+|||||+||++||++||.++|++++...+            .|.|++...+..    
T Consensus        27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~  106 (427)
T COG0285          27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER  106 (427)
T ss_pred             hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence            778877777652   5678999999999999999999999999999954443            233443332210    


Q ss_pred             ---ccC------C-------------CCCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhhhccC-CHHHHHHH
Q 020059           90 ---IAL------P-------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT  145 (331)
Q Consensus        90 ---~~~------~-------------~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~  145 (331)
                         ...      +             +.+.++|++|+|+|.| .+|.+++ +.|+++|||+|+.||++++| |+|+|+.+
T Consensus       107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E  185 (427)
T COG0285         107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE  185 (427)
T ss_pred             HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence               000      0             2255699999999975 5777776 78999999999999999999 99999999


Q ss_pred             HHHhccccCCCceEEEeC-CChhhHHHHh----ccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcH
Q 020059          146 KCHLFSHMVNTKLGLLPF-GNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR  220 (331)
Q Consensus       146 K~~i~~~~~~~~~~v~n~-dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~  220 (331)
                      |++|++   ++..+|+.. +.|.......    ....++..++.+  +.....  ...+.....+.   .....+|++|.
T Consensus       186 KAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~---~~~~~lp~l~~  255 (427)
T COG0285         186 KAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGGG---LLDLPLPLLGG  255 (427)
T ss_pred             hhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCCe---eeeeccccccc
Confidence            999998   455677765 4565554432    223333333221  111111  12233332222   12347898888


Q ss_pred             H-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CC
Q 020059          221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH  293 (331)
Q Consensus       221 ~-n~~NalaA~~~a~~~~lg--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~  293 (331)
                      | |+.|+++|+  +++..++  ++.+.|++||++..| |||||++.  .++ .++.| .||||+|+.++.+.++    .+
T Consensus       256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~--~~p-~i~lD-gAHNp~aa~~La~~l~~~~~~~  328 (427)
T COG0285         256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVDW-PGRLERLS--ENP-LILLD-GAHNPHAARALAETLKTLFNDR  328 (427)
T ss_pred             hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCcC-CceEEEec--CCC-eEEEE-CCCCHHHHHHHHHHHHHHhccC
Confidence            7 999999999  8888887  589999999999998 99999994  454 45556 5999999988877663    23


Q ss_pred             c-EEEEEcCCCCCCCCccCCChhhhhhhhcce
Q 020059          294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNHH  324 (331)
Q Consensus       294 ~-~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~  324 (331)
                      + +++|+|.+.+|       |...+++.+.+.
T Consensus       329 ~~~~~v~g~l~dK-------d~~~~l~~L~~~  353 (427)
T COG0285         329 PRLTLVFGMLKDK-------DIAGMLAALLPI  353 (427)
T ss_pred             CceEEEEEeecCC-------CHHHHHHHhhcc
Confidence            3 89999999999       788888888665

>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

Probab=100.00  E-value=6.1e-40  Score=312.09  Aligned_cols=269  Identities=19%  Similarity=0.170  Sum_probs=186.4

Q ss_pred             eeeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhhc---
Q 020059           28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC---   89 (331)
Q Consensus        28 ~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~---   89 (331)
                      -|.|+..+.+.+.   ++.++||||||||||||++||+++|+++|++++++++.            |.+++...+..   
T Consensus        31 ~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~  110 (416)
T PRK10846         31 GLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFA  110 (416)
T ss_pred             ChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHH
Confidence            4666666666552   35689999999999999999999999999999776642            23332111100   


Q ss_pred             ----------cc----------CCCCCCCCcEEEEEec-cccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 020059           90 ----------IA----------LPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC  147 (331)
Q Consensus        90 ----------~~----------~~~~~~~~~~~VlE~~-~~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~  147 (331)
                                .+          ..+.++++|++|+|+| +++++.++. ++|+++|||||++||+++|| |+|+|+++|+
T Consensus       111 ~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka  189 (416)
T PRK10846        111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKA  189 (416)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHHH
Confidence                      00          0023567899999999 567777665 68999999999999999999 8999999999


Q ss_pred             HhccccCCCceEEEeCCC-hh-hHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHH
Q 020059          148 HLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN  225 (331)
Q Consensus       148 ~i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N  225 (331)
                      +|++   +++.+|+|.|| +. ....+.+...++..++..  +.+..+.  ..+.+.....  .  ...++++ .||++|
T Consensus       190 ~Iik---~~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~N  257 (416)
T PRK10846        190 GIFR---AEKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLPN  257 (416)
T ss_pred             hhhc---CCCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHHH
Confidence            9998   36678888766 43 223344344444433321  1110000  1122111110  0  1135555 479999


Q ss_pred             HHHHHHHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhc---cC-CCcEEEEE
Q 020059          226 AAVAALSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD---LK-GHKCVILL  299 (331)
Q Consensus       226 alaA~~~a~~~--~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~---~~-~~~~i~V~  299 (331)
                      +++|+  +++.  .++++.+.|+++|++++ +|||||++.  .. ..+|+|+ ||||++++++++.   +. .+|+++|+
T Consensus       258 ~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~-~~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~Vf  330 (416)
T PRK10846        258 AATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ES-PRVILDV-AHNPHAAEYLTGRLKALPKNGRVLAVI  330 (416)
T ss_pred             HHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CC-CcEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99998  6653  36799999999999999 599999995  23 3577786 9999999988544   33 35899999


Q ss_pred             cCCCCCCCCccCCChhhhhhhhcc
Q 020059          300 GGQAKVLNGQESNGFEKLIEPLNH  323 (331)
Q Consensus       300 G~~~~~g~~~~~~~~~~l~~~l~~  323 (331)
                      |.++++       |+...+..+.+
T Consensus       331 g~~gdk-------d~~~~l~~L~~  347 (416)
T PRK10846        331 GMLHDK-------DIAGTLACLKS  347 (416)
T ss_pred             EeeCCC-------CHHHHHHHHhh
Confidence            999877       67777766643

>PLN02881 tetrahydrofolylpolyglutamate synthase

Probab=100.00  E-value=3.2e-37  Score=294.50  Aligned_cols=260  Identities=21%  Similarity=0.228  Sum_probs=187.8

Q ss_pred             eeeHHHHHHhhCC-----CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhh---
Q 020059           28 VMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAF---   87 (331)
Q Consensus        28 ~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~---   87 (331)
                      -|.|+..+.+.+.     +++++||||||||||||++|+++||++.|++++++++.            |.|++...+   
T Consensus        41 ~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~  120 (530)
T PLN02881         41 QFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRY  120 (530)
T ss_pred             ChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHH
Confidence            3556666655442     36689999999999999999999999999999776662            445544211   


Q ss_pred             --------hccc-C----C-------------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CH
Q 020059           88 --------HCIA-L----P-------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM  139 (331)
Q Consensus        88 --------~~~~-~----~-------------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~  139 (331)
                              +... .    +             +.+.++|++|+|+|. +.+|.++...+|+++|||||+.||+++|| |+
T Consensus       121 f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tl  200 (530)
T PLN02881        121 FWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTL  200 (530)
T ss_pred             HHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCH
Confidence                    1000 0    1             125678999999995 56777775458999999999999999999 99


Q ss_pred             HHHHHHHHHhccccCCCceEEEeCCChhhHHHHh----ccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecC
Q 020059          140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM  215 (331)
Q Consensus       140 e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (331)
                      |+|+.+|++|++   ++..+|+..+.+....++.    ....++..++..       +    .+.         +....+
T Consensus       201 e~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~-------~----~~~---------~~~~~l  257 (530)
T PLN02881        201 GKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPL-------D----SYG---------LSGLKL  257 (530)
T ss_pred             HHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEeccc-------c----cce---------ecccCC
Confidence            999999999998   5666777666666655442    223333332210       0    011         112368


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCceeEEee------ecCcEEEEEc
Q 020059          216 KVMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDD  274 (331)
Q Consensus       216 ~l~G~~n~~NalaA~~~a~~~~l---------------g~~~~~i~~~l~~~~~~~gR~e~~~~------~~~~~~iidD  274 (331)
                      ++.|.||..|+++|+  +++..+               ...++.+++||+++.| |||||++..      ..++..++.|
T Consensus       258 ~L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~~~~~~~~~~~~~~~~LD  334 (530)
T PLN02881        258 GLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVPDSYINSEDSGDLVFYLD  334 (530)
T ss_pred             CCCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEeccccccccCCCCCeEEEE
Confidence            899999999999999  555543               2345689999999997 999999941      0145678888


Q ss_pred             CCCCCHHHHHHHHhccC------------------------------CCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059          275 SKATNLEATCTGLMDLK------------------------------GHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (331)
Q Consensus       275 ~~a~np~s~~~al~~~~------------------------------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l  321 (331)
                      . ||||+|++++.+.+.                              ..++++|||.|.++       |+..+++.|
T Consensus       335 G-AHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dk-------D~~~lL~~L  403 (530)
T PLN02881        335 G-AHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVR-------DPQLLLPPL  403 (530)
T ss_pred             C-CCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCC-------CHHHHHHHH
Confidence            5 999999998877651                              12689999999998       777777766

>PRK14016 cyanophycin synthetase; Provisional

Probab=100.00  E-value=1.6e-34  Score=290.18  Aligned_cols=251  Identities=18%  Similarity=0.191  Sum_probs=177.4

Q ss_pred             eccccccCC-hHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhh
Q 020059            7 FLLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA   85 (331)
Q Consensus         7 ~~~~~~~~~-p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~   85 (331)
                      .+|+++..+ |....+++.+.+++..+.....  +.+.|+|+||||||||||++|++++|+..|+++++.++.|..+...
T Consensus       445 ~sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~  522 (727)
T PRK14016        445 AAPGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGR  522 (727)
T ss_pred             CCcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCE
Confidence            355555433 6555566666566555322111  1367999999999999999999999999999998888877655332


Q ss_pred             hhhcc--cC------CCCCCCCcEEEEEeccccccccCc-eecccEEEEecCChhhhhccC--CHHHHHHHHHHhccccC
Q 020059           86 AFHCI--AL------PSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMV  154 (331)
Q Consensus        86 ~~~~~--~~------~~~~~~~~~~VlE~~~~~~~~~~~-~~~p~i~viTni~~dHl~~~g--t~e~~~~~K~~i~~~~~  154 (331)
                      ....-  +.      -..+++.|++|+|+|++++..... +.+|+++|||||+.||+++++  |+|+|+++|+.+++.++
T Consensus       523 ~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~  602 (727)
T PRK14016        523 LIDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVK  602 (727)
T ss_pred             EeccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhC
Confidence            11000  00      012456799999999988754332 468999999999999999875  99999999999999888


Q ss_pred             CCceEEEeCCChhhHHHHhccCccEEEeccCCCccc-----cccccc-----ceEEEecCceeEE---EEeecCCCCc--
Q 020059          155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAKT-----ASFEVPAVGVVSQ---LQLHNMKVMG--  219 (331)
Q Consensus       155 ~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~---~~~~~l~l~G--  219 (331)
                      ++|.+|+|+||+.+..+......++++|+.+++..+     ..+...     ..+.+...+.+..   +..+.+.++|  
T Consensus       603 ~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~  682 (727)
T PRK14016        603 PDGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKA  682 (727)
T ss_pred             CCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcc
Confidence            899999999999998887766667888886532111     001100     0111111111111   1112333366  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCceeE
Q 020059          220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI  261 (331)
Q Consensus       220 ~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~----~~gR~e~  261 (331)
                      .||++|+++|+  |+++.+|++.+.|+++|++|++    +||||++
T Consensus       683 ~hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~  726 (727)
T PRK14016        683 GFNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL  726 (727)
T ss_pred             hhhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence            79999999999  8999999999999999999996    8999985

>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment

Probab=100.00  E-value=5.8e-33  Score=236.78  Aligned_cols=176  Identities=25%  Similarity=0.348  Sum_probs=131.0

Q ss_pred             EeCCCChHhHHHHHHHHHHhcCCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEeccccccc--cCceeccc
Q 020059           48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPT  121 (331)
Q Consensus        48 VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~--~~~~~~p~  121 (331)
                      ||||||||||++||+++|++.|..+++.|+    +|.+......       .+.+.+++|+|+|++++..  ....++|+
T Consensus         1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~V~E~~~~~~~~~~l~~~~~p~   73 (188)
T PF08245_consen    1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNA-------REGGADIAVLEVSEGGLGDERLSFLLKPD   73 (188)
T ss_dssp             EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHH-------HHTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhh-------cccccceeeeeccCCccccceeeeeeehh
Confidence            899999999999999999999998888887    4444333322       1346889999999985443  22237899


Q ss_pred             EEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCCcccc-----ccccc
Q 020059          122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKT  196 (331)
Q Consensus       122 i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  196 (331)
                      ++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||.+.........++++|+.....++.     .....
T Consensus        74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~  153 (188)
T PF08245_consen   74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG  153 (188)
T ss_dssp             EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred             eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence            9999999999999999999999999999999988999999999998877777777789999987544221     11112


Q ss_pred             ceEEEe-cCceeEEEEeecCCCCcHHHHHHHHHHHHHHHH
Q 020059          197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG  235 (331)
Q Consensus       197 ~~~~~~-~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~  235 (331)
                      ..+.+. ..+...+   +.++++|.||++|+++|+  ++|
T Consensus       154 ~~~~i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a  188 (188)
T PF08245_consen  154 GRFRIISYNGEEFE---IELPLPGKHNVENALAAI--AAA  188 (188)
T ss_dssp             EEEEEEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred             cEEEEEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence            222211 1232233   489999999999999999  554

The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....

>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]

Probab=99.97  E-value=4.2e-31  Score=243.35  Aligned_cols=253  Identities=23%  Similarity=0.257  Sum_probs=179.6

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhhhcc----------------cC
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI----------------AL   92 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~~----------------~~   92 (331)
                      .++.+|||||||||+||++++++||++.|++++.+.+            .|.|++...+...                ..
T Consensus        70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~  149 (496)
T KOG2525|consen   70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM  149 (496)
T ss_pred             hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence            4678999999999999999999999999999854443            2445444332110                00


Q ss_pred             C-------------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhccccCCCc
Q 020059           93 P-------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK  157 (331)
Q Consensus        93 ~-------------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~  157 (331)
                      +             +...++|++|+|+|. |.+|.++++-+|-++.||+|+.||++.+| |+++|+.+|++||+   ++.
T Consensus       150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK---~gv  226 (496)
T KOG2525|consen  150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK---EGV  226 (496)
T ss_pred             CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccc---cCC
Confidence            0             236789999999996 46788887778999999999999999999 99999999999998   355


Q ss_pred             eEEEeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059          158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD  237 (331)
Q Consensus       158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~  237 (331)
                      .+++....+.....+........                .......+.....+....+.+.|.||..|+..|+.++-++.
T Consensus       227 paft~~q~~e~~nvL~~ra~e~~----------------~~L~~v~p~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~  290 (496)
T KOG2525|consen  227 PAFTVPQPPEALNVLKERASELG----------------VPLFVVPPLEAYELSGVNLGLIGTHQWSNASLAVQLASEWL  290 (496)
T ss_pred             ceEEcCCcHHHHHHHHHHHHhcC----------------CCceecCCchhhhhcCCcccccccchhhhhHHHHHHHHHHH
Confidence            55555566666665543211100                00000000000011112478899999999999984333332


Q ss_pred             -------c--------C--CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC-------CC
Q 020059          238 -------I--------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-------GH  293 (331)
Q Consensus       238 -------l--------g--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-------~~  293 (331)
                             .        +  +++. ...||+++.| |||.|++. ..++++++.|. |||++||+++.+.++       +.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~i~~~-~l~GL~~~~w-PGR~qil~-~~~~~~~llDG-AHt~eSaea~~~w~~~~~~~~~~~  366 (496)
T KOG2525|consen  291 IQNGRVAEGVLDALQTSGLIPPA-FLSGLASTDW-PGRLQILE-YGRGVTWLLDG-AHTKESAEACAKWFRKAVRGLKKL  366 (496)
T ss_pred             HhcCcccccCCCccccccCCCHH-HhcchhhccC-CCceEEEe-cCCCcEEEecC-CCCHHHHHHHHHHHHHHhccCCCc
Confidence                   0        2  4444 5569999998 99999996 34778899995 999999999876652       22


Q ss_pred             c-EEEEEcCCCCCCCCccCCChhhhhhhhcc
Q 020059          294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (331)
Q Consensus       294 ~-~i~V~G~~~~~g~~~~~~~~~~l~~~l~~  323 (331)
                      + +|++|..+.++       |...|+..+++
T Consensus       367 ~~~illfn~t~~~-------d~~~Ll~~L~~  390 (496)
T KOG2525|consen  367 TSLILLFNCTSDR-------DPPLLLPLLKP  390 (496)
T ss_pred             cceEEEEEecCCc-------chHhHhHHhcc
Confidence            2 59999999998       67788888877

>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family

Probab=99.17  E-value=3.7e-11  Score=89.80  Aligned_cols=66  Identities=23%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             CCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcc
Q 020059          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH  323 (331)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~  323 (331)
                      +|||||++. ..+++.+|+| |||||+|++++++.+    +.+|+++|+|.|.++|.... ..+..+...++.
T Consensus         1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~-~~~~~~~~~~~~   70 (91)
T PF02875_consen    1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDK-DFHEEIGELAAQ   70 (91)
T ss_dssp             ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHH-HCHHHHHHHHTT
T ss_pred             CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccH-HHHHHHHHHHHh
Confidence            389999996 4678999999 699999999998887    46899999999999665432 225566666654

; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.55  E-value=0.021  Score=51.22  Aligned_cols=118  Identities=17%  Similarity=0.217  Sum_probs=73.1

Q ss_pred             CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec----------cc-Ccccchhhhhhc--------ccCC------
Q 020059           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG----------GN-LGNPLSEAAFHC--------IALP------   93 (331)
Q Consensus        41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~----------g~-~g~~~~~~~~~~--------~~~~------   93 (331)
                      .+..+|||||+  .||||...-|..-|...|++++..          |+ +|.-+-...+..        ..+.      
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            35679999998  579999999999999999988542          22 121111111100        0000      


Q ss_pred             ----------CCCCCCcEEEEEec-cccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEe
Q 020059           94 ----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (331)
Q Consensus        94 ----------~~~~~~~~~VlE~~-~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (331)
                                ....++|+.++|+. .||-+..-. -..|+.+++.+.       |.-+++-..|.++++-   ...+|+|
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~p-------g~GD~~Q~iK~GimEi---aDi~vIN  197 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIP-------GAGDDLQGIKAGIMEI---ADIIVIN  197 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecC-------CCCcHHHHHHhhhhhh---hheeeEe
Confidence                      01346899999987 466553211 234776666652       2234555778888874   6689999


Q ss_pred             CCChhhH
Q 020059          163 FGNQHLN  169 (331)
Q Consensus       163 ~dd~~~~  169 (331)
                      ..|..-.
T Consensus       198 KaD~~~A  204 (323)
T COG1703         198 KADRKGA  204 (323)
T ss_pred             ccChhhH
Confidence            9886544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=93.88  E-value=0.87  Score=42.17  Aligned_cols=115  Identities=14%  Similarity=0.084  Sum_probs=65.8

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc-Ccccchhh-------hhhcc-----------cCC------
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEA-------AFHCI-----------ALP------   93 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~-~g~~~~~~-------~~~~~-----------~~~------   93 (331)
                      .+..+|+|+|+.  ||||++..+...|+..|++++.... ...+.+..       +.+..           ...      
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~  133 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV  133 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence            356799999986  7999999999999999988864332 22222110       00000           000      


Q ss_pred             ----------CCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeC
Q 020059           94 ----------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF  163 (331)
Q Consensus        94 ----------~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~  163 (331)
                                ....++|+.++|+..-+-....+.-..|+.++-.       ..++-+++-..|..+++.   ...+|+|.
T Consensus       134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~-------~p~~gd~iq~~k~gi~E~---aDIiVVNK  203 (332)
T PRK09435        134 ARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQ-------LPGAGDELQGIKKGIMEL---ADLIVINK  203 (332)
T ss_pred             HHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEe-------cCCchHHHHHHHhhhhhh---hheEEeeh
Confidence                      0123578899998743211111222346655541       123445565666666653   34788898


Q ss_pred             CC
Q 020059          164 GN  165 (331)
Q Consensus       164 dd  165 (331)
                      -|
T Consensus       204 aD  205 (332)
T PRK09435        204 AD  205 (332)
T ss_pred             hc
Confidence            77

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=92.93  E-value=0.64  Score=33.65  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=24.4

Q ss_pred             EEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059           46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        46 I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      |.++|.  .||||++..+...|++.|+++...
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~   33 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI   33 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            556655  699999999999999999887443

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=92.69  E-value=0.32  Score=40.05  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecccCcc
Q 020059           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGN   80 (331)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~~g~   80 (331)
                      +++++|+|.+  ||||+.+=|-..|++.|+++++.-..+.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh   41 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH   41 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence            5799999974  9999999999999999999965544333

>PRK15453 phosphoribulokinase; Provisional

Probab=92.30  E-value=0.22  Score=44.83  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhcC
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG   69 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g   69 (331)
                      ++.++|+|||+.  ||||++..++++|+..+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~   33 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN   33 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            467899999985  79999999999997554

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=92.23  E-value=0.2  Score=44.74  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|.  |-.||||++.-|++.|...|+++.+
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVll   34 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMI   34 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEE
Confidence            344444  8889999999999999999998864

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=92.23  E-value=0.17  Score=44.24  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=29.3

Q ss_pred             EEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      +|+|+|.-||||+..-|..-|+..|+++.+..+
T Consensus         1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT   33 (232)
T TIGR03172         1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT   33 (232)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence            589999999999999999999999999865444

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=91.37  E-value=0.29  Score=43.97  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++|+|+  |-.|||||+.-|+..|.+.|+++.+.
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv   35 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV   35 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence            567777  66799999999999999999998653

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=91.31  E-value=0.3  Score=42.03  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             EEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|+|+  |-.||||++.-|++.|.+.|+++.+
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLl   33 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQ   33 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEE
Confidence            45666  6678999999999999999998854

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=90.69  E-value=0.37  Score=41.86  Aligned_cols=31  Identities=35%  Similarity=0.483  Sum_probs=28.1

Q ss_pred             CcEEEEeCCC---ChHhHHHHHHHHHHhcCCCee
Q 020059           43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        43 ~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      ++.+.||||.   |||.+++.|.+.|+++|+++.
T Consensus         2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~   35 (223)
T COG0132           2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA   35 (223)
T ss_pred             CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence            4688999996   999999999999999999875

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=90.51  E-value=0.41  Score=41.99  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=26.6

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+   |-.||||++..|+..|...|+++.+
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vll   35 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVAL   35 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence            567776   6678999999999999999999864

>PHA02518 ParA-like protein; Provisional

Probab=90.40  E-value=0.41  Score=40.86  Aligned_cols=30  Identities=37%  Similarity=0.496  Sum_probs=25.2

Q ss_pred             EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|+|+   |-.||||++..|++.|...|+++.+
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vll   34 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLL   34 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            45555   6778999999999999999998854

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=90.35  E-value=0.41  Score=45.69  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=30.0

Q ss_pred             CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.++
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI  156 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV  156 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence            45899999   88899999999999999999998653

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=90.29  E-value=0.4  Score=44.23  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             CCcEEEE----eCCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        42 ~~~~I~V----tGT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ..|+|.|    .|-.|||+++.+|...|++.|+++++.
T Consensus        48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il   85 (325)
T PRK00652         48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV   85 (325)
T ss_pred             CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence            5689999    799999999999999999999998643

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=90.23  E-value=0.43  Score=42.88  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=26.4

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+  |-.|||||+.-|++.|...|+++.+
T Consensus         2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLl   34 (274)
T PRK13235          2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMV   34 (274)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence            567776  6667999999999999999999864

>PRK10037 cell division protein; Provisional

Probab=90.20  E-value=0.43  Score=42.23  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=27.3

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++|+|.   |-.||||++.-|++.|.+.|+++.+.
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI   36 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI   36 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence            577777   67789999999999999999998643

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=90.19  E-value=0.66  Score=41.61  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             CCCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +..++|+||   |--||||++..|+..|...|+++.+
T Consensus       101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vll  137 (274)
T TIGR03029       101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLL  137 (274)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            467899999   6779999999999999999988854

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=90.03  E-value=0.46  Score=45.04  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=30.4

Q ss_pred             CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.+.-
T Consensus       105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID  142 (387)
T PHA02519        105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE  142 (387)
T ss_pred             CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence            46799999   888999999999999999999985543

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=89.93  E-value=0.37  Score=41.55  Aligned_cols=32  Identities=34%  Similarity=0.534  Sum_probs=28.3

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++|.||   |-.|||||++-|...|...|+++.+.
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li   37 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI   37 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence            578888   78899999999999999999998653

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=89.87  E-value=0.34  Score=41.13  Aligned_cols=27  Identities=37%  Similarity=0.664  Sum_probs=23.8

Q ss_pred             EEEEeC--CCChHhHHHHHHHHHHhcCCC
Q 020059           45 ILAVTG--TNGKSTVVTFVGQMLNHLGIE   71 (331)
Q Consensus        45 ~I~VtG--T~GKTTt~~~l~~iL~~~g~~   71 (331)
                      +|+|+|  ..||||++..|...|.+.|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            688987  469999999999999988866

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>COG4240 Predicted kinase [General function prediction only]

Probab=89.75  E-value=0.54  Score=40.81  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             HHHcCCeeeeHHHHHHhhCCCCCcEEEEeCC--CChHhHHHHHHHHHHhcC-CCeee
Q 020059           21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEAFV   74 (331)
Q Consensus        21 a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g-~~~~~   74 (331)
                      +.+.-+|.+.+++-.++-. .+.-+++|.|.  +||||++..|..+|.+.| ++++.
T Consensus        29 ~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~   84 (300)
T COG4240          29 AQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTAT   84 (300)
T ss_pred             HHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEE
Confidence            4555566655555554444 35669999997  689999999999999998 56643

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=89.71  E-value=0.51  Score=41.36  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=27.2

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++|+|+   |-.||||++.-|++.|...|+++.+.
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli   36 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI   36 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence            577776   57799999999999999999998643

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=89.59  E-value=0.51  Score=44.80  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.+.
T Consensus       105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI  141 (388)
T PRK13705        105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV  141 (388)
T ss_pred             CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence            46899999   88999999999999999999998554

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=89.58  E-value=0.78  Score=39.09  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=28.5

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .+.++|+|+++   .||||++..|+..|...|+++.+
T Consensus        15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll   51 (204)
T TIGR01007        15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL   51 (204)
T ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            35789999944   47999999999999999988754

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=89.57  E-value=0.52  Score=41.19  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=28.8

Q ss_pred             CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeec
Q 020059           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +++|+|+|  -.||||++.-|...|+..|+++++.
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi   35 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA   35 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence            46899999  7899999999999999999998655

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=89.55  E-value=0.49  Score=42.61  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|.  |-.|||||+.-|++.|...|+++.+
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLl   34 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLV   34 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEE
Confidence            466666  6779999999999999999998854

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=89.36  E-value=0.28  Score=47.74  Aligned_cols=122  Identities=22%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             cCChHHHHHHHcCCee-eeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe-eecccCcccchhhhhhcc
Q 020059           13 LKATGLACLLQSGKRV-MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCI   90 (331)
Q Consensus        13 ~~~p~~~~a~~~g~~~-l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~-~~~g~~g~~~~~~~~~~~   90 (331)
                      ..+-....|.+.|.-+ ..+.+.  .......++|.|+||+||++++++..+.+.....++ +..|+.|..-....+...
T Consensus        35 ~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~  112 (475)
T COG0769          35 DGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQI  112 (475)
T ss_pred             ccccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHH
Confidence            4455556677777543 344433  222234569999999999999999999998754443 444655543222221111


Q ss_pred             cCCCCCCCCcEEEEEeccc---cccccCceecccEEEEecCChhhhhccCC
Q 020059           91 ALPSSKPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKT  138 (331)
Q Consensus        91 ~~~~~~~~~~~~VlE~~~~---~~~~~~~~~~p~i~viTni~~dHl~~~gt  138 (331)
                      .. .....+.++..|..+.   ..+ ......|+...++|+..|++|..++
T Consensus       113 ~~-~~g~~~~~~gT~g~~~~~~~~~-~~~~tTP~~~~l~~~~~~~~d~~~e  161 (475)
T COG0769         113 LK-KLGKKTALIGTEGDELSPGILE-PTGLTTPEALDLQNLLRDLLDRGAE  161 (475)
T ss_pred             HH-hcCCceEEEEEEeeeccCCccc-ccCCCCccHHHHHHHHHHHHHcCCc
Confidence            11 1123344556555432   222 2224689999999999999988764

>COG2403 Predicted GTPase [General function prediction only]

Probab=89.13  E-value=0.45  Score=44.11  Aligned_cols=32  Identities=34%  Similarity=0.508  Sum_probs=29.0

Q ss_pred             CCcEEEEeCC---CChHhHHHHHHHHHHhcCCCee
Q 020059           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      ..|+|+||||   .|||++++++.++|++.|+++.
T Consensus       125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~  159 (449)
T COG2403         125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC  159 (449)
T ss_pred             cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence            5689999998   5999999999999999999974

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=88.83  E-value=0.63  Score=44.14  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=29.3

Q ss_pred             CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +.++|+|+   |-.|||||+.-|++.|...|+++.+.
T Consensus       103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI  139 (387)
T TIGR03453       103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI  139 (387)
T ss_pred             CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            45789988   77899999999999999999998643

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=88.79  E-value=0.63  Score=41.61  Aligned_cols=31  Identities=32%  Similarity=0.403  Sum_probs=26.3

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+  |-.|||||+.-|++.|...|+++.+
T Consensus         3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLl   35 (270)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQ   35 (270)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            466665  7789999999999999999999854

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=88.64  E-value=0.63  Score=41.54  Aligned_cols=29  Identities=34%  Similarity=0.357  Sum_probs=24.8

Q ss_pred             EEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        46 I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      |+|+  |-.||||++.-|++.|...|+++.+
T Consensus         3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvll   33 (267)
T cd02032           3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQ   33 (267)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            4554  6779999999999999999999864

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=88.26  E-value=0.74  Score=41.45  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=27.8

Q ss_pred             CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeec
Q 020059           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +++|+|+|  ..||||.+.-|...|++.| ++++.
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I   34 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV   34 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence            46899999  8899999999999999999 67543

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=88.24  E-value=0.69  Score=42.17  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=25.2

Q ss_pred             EEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|+|.  |--|||||+.-|++.|.+.|+++.+
T Consensus         2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLl   33 (296)
T TIGR02016         2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQ   33 (296)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            44444  7789999999999999999999854

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=88.01  E-value=0.86  Score=41.38  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=23.4

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNH   67 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~   67 (331)
                      +...+|||+|.+  ||||++.+|..+|+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~   88 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSR   88 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            345799999987  799999999999985

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=87.94  E-value=0.66  Score=41.46  Aligned_cols=28  Identities=32%  Similarity=0.559  Sum_probs=23.3

Q ss_pred             EEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059           45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA   72 (331)
Q Consensus        45 ~I~VtGT~--GKTTt~~~l~~iL~~~g~~~   72 (331)
                      +|+|||+.  ||||++.-+.++|+..|.++
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v   30 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP   30 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence            58999975  79999999999998776543

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=87.72  E-value=0.81  Score=41.68  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=28.4

Q ss_pred             CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++++|+|.  |--|||||+.-|+..|.+.|+++.+.
T Consensus         3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli   38 (295)
T PRK13234          3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV   38 (295)
T ss_pred             cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            45677776  66789999999999999999998654

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=87.65  E-value=0.98  Score=37.13  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=28.1

Q ss_pred             CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeec
Q 020059           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +++|+|+|  -.||||....|...|...|++++..
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i   35 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI   35 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence            36899998  5799999999999999999987543

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=87.36  E-value=1  Score=38.65  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=28.1

Q ss_pred             CCCcEEEEe---CCCChHhHHHHHHHHHHh-cCCCeee
Q 020059           41 RSIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~-~g~~~~~   74 (331)
                      ...++|+|+   |-.||||++..|++.|.. .|+++.+
T Consensus        33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLl   70 (207)
T TIGR03018        33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLL   70 (207)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence            357899999   677999999999999986 6887743

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=87.35  E-value=0.83  Score=40.32  Aligned_cols=31  Identities=29%  Similarity=0.566  Sum_probs=26.4

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+   |-.||||++.-|+..|...|+++.+
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vll   35 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVL   35 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEE
Confidence            567776   5678999999999999999998864

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=87.24  E-value=0.98  Score=41.78  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=30.0

Q ss_pred             CCCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++.++|.|+  |..||||++.-|+..|.+.|+++.+.
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli   65 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI   65 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            467788888  57899999999999999999998654

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>TIGR01287 nifH nitrogenase iron protein

Probab=87.22  E-value=0.82  Score=41.01  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=25.5

Q ss_pred             EEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|+|.  |-.||||++.-|++.|...|+++.+
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vll   33 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMI   33 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence            45555  6789999999999999999998854

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=87.16  E-value=0.91  Score=42.77  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      -.++|+|+   |-.|||||+.-|+..|.+.|+++.+
T Consensus       106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlL  141 (369)
T PRK11670        106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGI  141 (369)
T ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            34789998   7789999999999999999999864

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=86.92  E-value=1.4  Score=42.11  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=29.8

Q ss_pred             CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +++|+|+|  -.||||...-|-..|+..|++++++-
T Consensus         1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK   36 (452)
T PRK14495          1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK   36 (452)
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            47899999  77999999999999999999997643

>PRK14974 cell division protein FtsY; Provisional

Probab=86.57  E-value=1.1  Score=41.50  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=28.9

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +..+|.++|.+  |||||...+++.|...|.++.+..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~  175 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA  175 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            35688899876  799999999999999998876543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=86.57  E-value=1  Score=36.11  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=24.2

Q ss_pred             cEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      |+|+|.|-  .||||.++.|-.-|...|++++.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~   33 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAV   33 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEE
Confidence            57788875  59999999999999999999864

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=86.23  E-value=0.74  Score=40.59  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=25.3

Q ss_pred             EEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++++.|-.||||++.-|++.|+..|++|..
T Consensus         6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla   35 (243)
T PF06564_consen    6 IVSPKGGVGKTTLTANLAWALARLGESVLA   35 (243)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            455557789999999999999999998753

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=86.19  E-value=1.1  Score=40.30  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHh-cCCCeeec
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFVG   75 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~-~g~~~~~~   75 (331)
                      ++|+|+  |-.|||||+.-|++.|.. .|+++.+.
T Consensus         3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli   37 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH   37 (275)
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence            566666  667899999999999997 69998654

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=85.89  E-value=1.1  Score=39.18  Aligned_cols=30  Identities=30%  Similarity=0.599  Sum_probs=25.3

Q ss_pred             EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|+|+   |-.||||++.-|++.|...|+++.+
T Consensus         2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vll   34 (251)
T TIGR01969         2 IITIASGKGGTGKTTITANLGVALAKLGKKVLA   34 (251)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence            45555   7789999999999999999998865

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=85.80  E-value=0.6  Score=41.60  Aligned_cols=30  Identities=30%  Similarity=0.338  Sum_probs=24.7

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|.  |-.|||||+.-|++.|...| ++.+
T Consensus         3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLl   34 (264)
T PRK13231          3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLV   34 (264)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEE
Confidence            455555  77899999999999999999 8753

>PRK13236 nitrogenase reductase; Reviewed

Probab=85.72  E-value=1.3  Score=40.41  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=28.1

Q ss_pred             CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++++|.|.  |-.|||||+.-|++.|.+.|+++.+
T Consensus         5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLl   39 (296)
T PRK13236          5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILI   39 (296)
T ss_pred             CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEE
Confidence            55677776  5679999999999999999999865

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=85.64  E-value=0.73  Score=38.20  Aligned_cols=26  Identities=38%  Similarity=0.681  Sum_probs=20.1

Q ss_pred             cEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059           44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      +.|+||||-  ||||++..|+    ..|+++.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~i   28 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR----ELGYKVI   28 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence            368999995  7999998887    4466663

>PRK07667 uridine kinase; Provisional

Probab=85.61  E-value=2  Score=36.40  Aligned_cols=31  Identities=29%  Similarity=0.408  Sum_probs=26.6

Q ss_pred             CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA   72 (331)
Q Consensus        42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~   72 (331)
                      +..+|+|+|-  .||||++..|...|...|.++
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~   48 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPF   48 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence            4579999985  689999999999999887765

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=85.57  E-value=0.84  Score=38.93  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             EEEEeCCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +||-|| .|||||..=|++-++..|.++.+..
T Consensus         6 lvGptG-vGKTTt~aKLAa~~~~~~~~v~lis   36 (196)
T PF00448_consen    6 LVGPTG-VGKTTTIAKLAARLKLKGKKVALIS   36 (196)
T ss_dssp             EEESTT-SSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             EECCCC-CchHhHHHHHHHHHhhccccceeec
Confidence            445555 4899999999999998898886544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00784 cobyric acid synthase; Provisional

Probab=85.55  E-value=0.99  Score=44.22  Aligned_cols=30  Identities=40%  Similarity=0.479  Sum_probs=26.4

Q ss_pred             cEEEEeCC---CChHhHHHHHHHHHHhcCCCee
Q 020059           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        44 ~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      +.|.||||   .|||+++..|.+.|++.|++++
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~   35 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA   35 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence            56888888   7999999999999999998764

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=85.49  E-value=1.3  Score=40.72  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=28.6

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +..+|++.|.|  |||||+..|+..++..|.++.+.+
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~  149 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA  149 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            35677777765  799999999999999988886654

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=85.46  E-value=1.2  Score=40.84  Aligned_cols=34  Identities=21%  Similarity=0.400  Sum_probs=28.7

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeec
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +..+|.+.|.|  |||||..=|++.|++.|+++.+.
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla  173 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA  173 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE
Confidence            45677788877  69999999999999999998653

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=85.26  E-value=1.1  Score=36.84  Aligned_cols=25  Identities=36%  Similarity=0.405  Sum_probs=22.8

Q ss_pred             CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           50 GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        50 GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      |-.||||++.-|+..|.+.|+++.+
T Consensus         9 gG~GKTt~a~~LA~~la~~g~~vll   33 (169)
T cd02037           9 GGVGKSTVAVNLALALAKLGYKVGL   33 (169)
T ss_pred             CcCChhHHHHHHHHHHHHcCCcEEE
Confidence            7789999999999999999999864

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>CHL00175 minD septum-site determining protein; Validated

Probab=85.25  E-value=1.4  Score=39.59  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=28.2

Q ss_pred             CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ..++|+|+   |-.||||++.-|++.|...|+++.+
T Consensus        14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vll   49 (281)
T CHL00175         14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVAL   49 (281)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence            45788888   4568999999999999999998864

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=85.18  E-value=1.4  Score=38.42  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      ++|.+.   |-.||||...+|+..|.+.|.++.++-
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID   37 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALASELAARGARVALID   37 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            455554   778999999999999999999886643

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=85.10  E-value=1.4  Score=39.61  Aligned_cols=35  Identities=20%  Similarity=0.408  Sum_probs=28.7

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +.++|.++|.+  |||||+.-|+..|...|+++.+..
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45788888764  799999999999999998886544

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=85.06  E-value=1  Score=37.69  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=24.3

Q ss_pred             EEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +.+.-|-.||||++..|+..|...|+++.+
T Consensus         3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll   32 (195)
T PF01656_consen    3 VTSGKGGVGKTTIAANLAQALARKGKKVLL   32 (195)
T ss_dssp             EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred             EEcCCCCccHHHHHHHHHhccccccccccc
Confidence            344457789999999999999999999854

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PRK10818 cell division inhibitor MinD; Provisional

Probab=85.05  E-value=1.3  Score=39.46  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=26.3

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+   |-.||||++.-|++.|...|+++.+
T Consensus         3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vll   36 (270)
T PRK10818          3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV   36 (270)
T ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence            567776   6678999999999999999988754

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=84.99  E-value=1.4  Score=39.06  Aligned_cols=29  Identities=21%  Similarity=0.256  Sum_probs=23.4

Q ss_pred             EEEeCCCChHhHHHHHHHHHH-hcCCCeee
Q 020059           46 LAVTGTNGKSTVVTFVGQMLN-HLGIEAFV   74 (331)
Q Consensus        46 I~VtGT~GKTTt~~~l~~iL~-~~g~~~~~   74 (331)
                      ...-|-.|||||+..|++.|. ..|+++.+
T Consensus         8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVLl   37 (259)
T COG1192           8 ANQKGGVGKTTTAVNLAAALAKRGGKKVLL   37 (259)
T ss_pred             EecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence            334488899999999999999 56688754

>PRK06696 uridine kinase; Validated

Probab=84.83  E-value=2.2  Score=36.96  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=28.1

Q ss_pred             CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .+..+|+|+|-  .||||++..|+..|...|.++..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~   55 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR   55 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            45679999974  68999999999999988766543

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=84.68  E-value=1.4  Score=36.99  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=23.7

Q ss_pred             EEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059           45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      +|+|+|.  .||||.+..|...|...|.++.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~   31 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPV   31 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            4778876  5899999999999998776653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK05439 pantothenate kinase; Provisional

Probab=84.63  E-value=1.9  Score=39.53  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhc--CCCeee
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL--GIEAFV   74 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~--g~~~~~   74 (331)
                      ....+|+|||+.  ||||++..|..+|...  |.++.+
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~v  121 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVEL  121 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEE
Confidence            345699999985  6999999999999764  444433

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=84.56  E-value=1.1  Score=39.11  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             eeeHHHHHHhhCCCCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCC
Q 020059           28 VMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE   71 (331)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~   71 (331)
                      +..++..+.+.. .+..+|+|+|-+  ||||.+..|...|+..+..
T Consensus        19 l~~~~~~~~~~~-~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         19 LLRRLAALQAEP-QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            344444444433 466799999986  6999999999999976543

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=84.28  E-value=1.4  Score=36.08  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=25.7

Q ss_pred             EEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059           45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +|+|+|.  .||||+...|...|+..|++++..-
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK   34 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK   34 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            3567664  5899999999999999999986544

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=84.21  E-value=2.1  Score=38.27  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=27.1

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCC
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE   71 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~   71 (331)
                      +..-+|||+||-  ||+||++.+..+|+..+..
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence            345699999995  8999999999999998776

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=83.64  E-value=1.9  Score=35.98  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             CCcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      ..++++|+|  -.||||...-|...|...|++++..-
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik   41 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence            567999999  46899999999999999898885443

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=83.63  E-value=1.6  Score=38.09  Aligned_cols=31  Identities=29%  Similarity=0.187  Sum_probs=26.0

Q ss_pred             EEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        45 ~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      .+-||||   .|||+++..|.+.|++.|++++.+
T Consensus         4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~   37 (231)
T PRK12374          4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY   37 (231)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            4667666   799999999999999999988543

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=83.37  E-value=2.5  Score=33.52  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=31.8

Q ss_pred             EEeCC-CChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEecc
Q 020059           47 AVTGT-NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS  108 (331)
Q Consensus        47 ~VtGT-~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~  108 (331)
                      .|||+ .|||+++.-+...|++.|.+++..-    |              ...+|+.++|-..
T Consensus         4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k----p--------------~~~~d~vliEGaG   48 (134)
T cd03109           4 FGTGTDIGKTVATAILARALKEKGYRVAPLK----P--------------VQTYDFVLVEGAG   48 (134)
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe----c--------------CCCCCEEEEECCC
Confidence            34443 6999999999999999999884332    1              1126889999763

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=82.89  E-value=1.7  Score=37.75  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEeCCC--ChHhHHHHHHHHHHh
Q 020059           45 ILAVTGTN--GKSTVVTFVGQMLNH   67 (331)
Q Consensus        45 ~I~VtGT~--GKTTt~~~l~~iL~~   67 (331)
                      +|||+|.+  ||||++..|...|+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            47888875  799999999999985

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=82.71  E-value=2.7  Score=37.32  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=59.8

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc-Ccccchh-----hhh--hc-----------ccCC------
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSE-----AAF--HC-----------IALP------   93 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~-~g~~~~~-----~~~--~~-----------~~~~------   93 (331)
                      .+..+|||||+-  ||||...-|...|.+.|++++...- -.+|++.     .+.  ..           ..+.      
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            366899999985  7999999999999999999864221 1112111     110  00           0000      


Q ss_pred             ----------CCCCCCcEEEEEec-cccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           94 ----------SSKPKFQVAVVEVS-SYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        94 ----------~~~~~~~~~VlE~~-~~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                                ....++|+.++|+- .||-+..-. ....-+.|++.=.-|-+.         ..|+++++-   ...+|+
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ---------~~KaGimEi---aDi~vV  174 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQ---------AIKAGIMEI---ADIFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCC---------TB-TTHHHH----SEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHH---------HHhhhhhhh---ccEEEE
Confidence                      01246899999986 466543211 122244555554445443         346677663   457899


Q ss_pred             eCCChh
Q 020059          162 PFGNQH  167 (331)
Q Consensus       162 n~dd~~  167 (331)
                      |..|..
T Consensus       175 NKaD~~  180 (266)
T PF03308_consen  175 NKADRP  180 (266)
T ss_dssp             E--SHH
T ss_pred             eCCChH
Confidence            987743

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=82.64  E-value=3.1  Score=37.98  Aligned_cols=36  Identities=28%  Similarity=0.272  Sum_probs=31.2

Q ss_pred             CCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      +.++|.|-||   .||=||+..|...+++.|++++..++
T Consensus       147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaT  185 (339)
T COG3367         147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVAT  185 (339)
T ss_pred             CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEec
Confidence            5679999999   49999999999999999999865443

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=82.59  E-value=4  Score=34.04  Aligned_cols=41  Identities=22%  Similarity=0.207  Sum_probs=31.5

Q ss_pred             eHHHHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHHHhcCCC
Q 020059           30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE   71 (331)
Q Consensus        30 ~~~~~~~~~~~~~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~   71 (331)
                      +..+...++. +...+|.++|  ..||||++..|...|...|..
T Consensus         6 ~~~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~   48 (184)
T TIGR00455         6 TKDERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR   48 (184)
T ss_pred             CHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence            3444445554 4678999999  889999999999999877654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=82.32  E-value=1.7  Score=37.94  Aligned_cols=28  Identities=29%  Similarity=0.532  Sum_probs=21.5

Q ss_pred             EEEEe--CCCChHhHHHH-HHHHHHhcCCCe
Q 020059           45 ILAVT--GTNGKSTVVTF-VGQMLNHLGIEA   72 (331)
Q Consensus        45 ~I~Vt--GT~GKTTt~~~-l~~iL~~~g~~~   72 (331)
                      .|+||  |-.||||.+++ +..+++..|+.+
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V   32 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV   32 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence            57888  67899999999 666666665554

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=82.29  E-value=1.8  Score=36.77  Aligned_cols=31  Identities=29%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             cEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +.|-||||   .|||+++..|.+.|++.|.+++.
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~   34 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGY   34 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence            35678887   59999999999999999998854

...

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=82.28  E-value=1.3  Score=39.44  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             eCCCChHhHHHHHHHHHHhcCCCeee
Q 020059           49 TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        49 tGT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      -|-.|||||+.-|++.|...|+++.+
T Consensus         8 KGGVGKTT~~~nLA~~La~~g~rVLl   33 (268)
T TIGR01281         8 KGGIGKSTTSSNLSVAFAKLGKRVLQ   33 (268)
T ss_pred             CCcCcHHHHHHHHHHHHHhCCCeEEE
Confidence            37889999999999999999999854

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=82.01  E-value=2.1  Score=39.25  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=30.0

Q ss_pred             CCcEEEEe----CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           42 SIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        42 ~~~~I~Vt----GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ..|+|.|.    |-.|||.++.+|...|++.|+++++.
T Consensus        27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il   64 (311)
T TIGR00682        27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVL   64 (311)
T ss_pred             CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEE
Confidence            57899885    88999999999999999999998543

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=81.72  E-value=1.7  Score=35.72  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=24.7

Q ss_pred             EEeCCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           47 AVTGTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        47 ~VtGT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      .-.|-.||||++..|+..|...|+++.+.
T Consensus         6 ~~kgG~GKtt~a~~la~~l~~~g~~vllv   34 (179)
T cd02036           6 SGKGGVGKTTTTANLGTALAQLGYKVVLI   34 (179)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            34578899999999999999999998654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=81.70  E-value=2.5  Score=37.88  Aligned_cols=33  Identities=36%  Similarity=0.498  Sum_probs=28.9

Q ss_pred             CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ..++|+||   |--|||||+..|+..|.+.|+++++
T Consensus        56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll   91 (265)
T COG0489          56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL   91 (265)
T ss_pred             cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence            46788888   6678999999999999999999964

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=80.98  E-value=2.4  Score=37.92  Aligned_cols=31  Identities=32%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .+|.|+   |-.|||||+..|+..|...|.++++
T Consensus        48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vgl   81 (300)
T KOG3022|consen   48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGL   81 (300)
T ss_pred             eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEE
Confidence            578887   8899999999999999999998864

>PRK03846 adenylylsulfate kinase; Provisional

Probab=80.63  E-value=4.8  Score=34.11  Aligned_cols=42  Identities=26%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             eHHHHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059           30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA   72 (331)
Q Consensus        30 ~~~~~~~~~~~~~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~   72 (331)
                      +..+...+.- .+..+|.++|  -.||||++..|...|...|..+
T Consensus        12 ~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~   55 (198)
T PRK03846         12 TKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST   55 (198)
T ss_pred             CHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence            3444444443 5678999999  7899999999999998776543

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=80.60  E-value=1.7  Score=39.51  Aligned_cols=29  Identities=34%  Similarity=0.344  Sum_probs=24.7

Q ss_pred             EEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        46 I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      |+|+  |-.|||||+.-|++.|...|+++.+
T Consensus         3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLl   33 (290)
T CHL00072          3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQ   33 (290)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence            4444  7789999999999999999999854

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=80.45  E-value=2.2  Score=41.37  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=26.9

Q ss_pred             CcEEEEeCCC---ChHhHHHHHHHHHHhcCCCeee
Q 020059           43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        43 ~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++.|.||||.   |||+++..|...|++.|+++..
T Consensus         3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~   37 (451)
T PRK01077          3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQP   37 (451)
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcce
Confidence            5678888775   5999999999999999988743

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=80.43  E-value=2.5  Score=37.29  Aligned_cols=30  Identities=33%  Similarity=0.412  Sum_probs=24.1

Q ss_pred             EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|.|+   |-.|||||+.=|+-.|...|+++++
T Consensus         2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~   34 (261)
T PF09140_consen    2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL   34 (261)
T ss_dssp             EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence            45665   7789999999999999999999964

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
3lk7_A	451	The Crystal Structure Of Udp-N-Acetylmuramoylalanin		4e-18
1e0d_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		1e-16
2uag_A	437	Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L		6e-16
2wjp_A	439	Crystal Structure Of Murd Ligase In Complex With D-		6e-16
2jff_A	445	Crystal Structure Of Murd Ligase In Complex With D-		7e-16

>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 152/310 (49%), Gaps = 33/310 (10%)
Query: 28  VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
           V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN+G P SE   
Sbjct: 99  VLTEVELAYLV--SESQLIGITGSNGKTTTTTXIAEVLNAGGQRGLLAGNIGFPASE--- 153
Query: 88  HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +   + K      V E+SS+Q+    K F P ++V+ NL P HL+ H + ++Y   K 
Sbjct: 154 -VVQAANDKDTL---VXELSSFQL-XGVKEFRPHIAVITNLXPTHLDYHGSFEDYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTASFEVPA 203
           ++ +   ++   +L F NQ +++ +   +   A I  F    K+D    + K   ++   
Sbjct: 209 NIQNQXSSSDFLVLNF-NQGISKELA--KTTKATIVPFSTTEKVDGAYVQDKQLFYKGEN 265
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
           +  V      ++ V G HN  N A+A ++V  L  G+  + +  T+       HR+Q + 
Sbjct: 266 IXSVD-----DIGVPGSHNVEN-ALATIAVAKL-AGISNQVIRETLSNFGGVKHRLQSLG 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN- 322
           + + G+++ +DSK+TN+ AT   L      K +++ GG  +       N F++LI  +  
Sbjct: 319 K-VHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNEFDELIPDITG 371
Query: 323 -HHRCVITEC 331
             H  V+ E 
Sbjct: 372 LKHXVVLGES 381

>pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y   K  ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

>pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

>pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 215
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 348

>pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 65/284 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y      ++ +    +VN    
Sbjct: 158 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVCVVNADDA 216
Query: 160 L-LP--------------FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 217 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 257 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 306
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK 304
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K
Sbjct: 307 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGK 349

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	5e-69
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	1e-64
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	8e-20
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	3e-17
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	9e-17
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	6e-16
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	5e-12
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	1e-07
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	1e-05
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	2e-05

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451

 Score =  221 bits (565), Expect = 5e-69
 Identities = 71/316 (22%), Positives = 139/316 (43%), Gaps = 31/316 (9%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +   L+    V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN
Sbjct: 89  VKKALEKQIPVLTEVELAYLVSES--QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN 146

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P SE          +       V+E+SS+Q+  +    F P ++V+ NL P HL+ H
Sbjct: 147 IGFPASEVV-------QAANDKDTLVMELSSFQLMGVKE--FRPHIAVITNLMPTHLDYH 197

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG---AFPGVKIDTE 193
            + ++Y   K ++ + M ++   +L F      E  K  +  +          G  +  +
Sbjct: 198 GSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDK 257

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
                 E         + + ++ V G HN  NA       +    G+  + +  T+    
Sbjct: 258 QLFYKGEN-------IMSVDDIGVPGSHNVENALATIA--VAKLAGISNQVIRETLSNFG 308

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
              HR+Q +   + G+++ +DSK+TN+ AT   L      K +++ GG  +       N 
Sbjct: 309 GVKHRLQSL-GKVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNE 361

Query: 314 FEKLIEPLNHHRCVIT 329
           F++LI  +   + ++ 
Sbjct: 362 FDELIPDITGLKHMVV 377

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score =  209 bits (535), Expect = 1e-64
 Identities = 83/334 (24%), Positives = 139/334 (41%), Gaps = 68/334 (20%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L+    +G  ++ +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN
Sbjct: 81  LSAAADAGIEIVGDIELFCREAQA--PIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 138

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P                + ++ V+E+SS+Q+E   +       + +LN+T DH++R+
Sbjct: 139 IGLPALMLL---------DDECELYVLELSSFQLETTSS--LQAVAATILNVTEDHMDRY 187

Query: 137 K-TMKNYALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLA 180
              ++ Y   K  ++ +               +       + FG    +  +  H+    
Sbjct: 188 PFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL-NHQQGET 246

Query: 181 WIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
           W+    G K+                   L +  MK+ G+HNY NA  A    L    G+
Sbjct: 247 WL-RVKGEKV-------------------LNVKEMKLSGQHNYTNALAALA--LADAAGL 284

Query: 241 DVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
              +    ++ L T    PHR ++V  +  GV W++DSKATN+ +T   L  L     + 
Sbjct: 285 PRASS---LKALTTFTGLPHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLH 340

Query: 298 LL-GGQAKVLNGQESNGFEKLIEPLNHH-RCVIT 329
           LL GG  K      S  F  L   LN     +  
Sbjct: 341 LLLGGDGK------SADFSPLARYLNGDNVRLYC 368

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498

 Score = 88.8 bits (221), Expect = 8e-20
 Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 45/261 (17%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS----- 95
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L         +P+      
Sbjct: 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKV-----IPTENTTGS 160

Query: 96  ------------KPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
                               +EVSS    Q  +    F    SV  NL+ DHL+ H  M+
Sbjct: 161 AVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKF--AASVFTNLSRDHLDYHGDME 218

Query: 141 NYALTKCHLFSHMVNTKLGLL----PFGNQHLNEA-------IKGHRFNLAWIGAFPGVK 189
           +Y   K  L+S   +    ++      G + L +        ++ H             +
Sbjct: 219 HYEAAKWLLYS-EHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATE 277

Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
           ++     A+    +     +++ H   +MG  N  N  +A  ++L L  G  +  L  T 
Sbjct: 278 VNYHDSGATIRFSSSWGDGEIESH---LMGAFNVSNLLLALATLLAL--GYPLADLLKTA 332

Query: 250 EILRTPPHRMQIVHRDIQGVT 270
             L+    RM++        T
Sbjct: 333 ARLQPVCGRMEVFTAP-GKPT 352

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 60/294 (20%), Positives = 123/294 (41%), Gaps = 50/294 (17%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
             +++A+TG++GK++V      +L+  G   +  GNL N    P++        L    P
Sbjct: 99  PARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMT--------LLRLTP 150

Query: 98  KFQVAVVEVS-SYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152
           ++  AV+E+  ++Q EI   +      P  ++V NL   HLE   ++   A  K  +FS 
Sbjct: 151 EYDYAVIELGANHQGEI--AWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG 208

Query: 153 MVNTKLGLLPFGNQHLN---EAIKGHR---FNLAWIGA-FPGVKIDTEAKTASFEVPAVG 205
           +    + ++   N         I   +   F+     + F    I   +    F +    
Sbjct: 209 LPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPT 268

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
               + L    + GRHN  N A+AA ++  + +G  ++A+ + +  L+  P R+  +   
Sbjct: 269 GSVDVLLP---LPGRHNIAN-ALAAAAL-SMSVGATLDAIKAGLANLKAVPGRLFPIQLA 323

Query: 266 IQGVTWVDDS--------KATNLEATCTGLMDLKGHKCVIL-----LGGQAKVL 306
            +    +DDS         A  ++     L ++ G++ +++     LG +++  
Sbjct: 324 -ENQLLLDDSYNANVGSMTAA-VQV----LAEMPGYRVLVVGDMAELGAESEAC 371

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 59/262 (22%), Positives = 91/262 (34%), Gaps = 47/262 (17%)

Query: 40  PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSK--- 96
              + ++ +TGT+GK+T    V   L   G  A + G +G  +  A      LPS+    
Sbjct: 143 SERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGA-----DLPSALTTP 197

Query: 97  --PKFQ------------VAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
             P  Q              V+EVSS       +    F   V    NL+ DHL+ H +M
Sbjct: 198 EAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRF--AVGAFTNLSRDHLDFHPSM 255

Query: 140 KNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEAIKGHRF-----NLAWIGAFPGV 188
            +Y   K  LF      +            G + +                A   A    
Sbjct: 256 ADYFEAKASLFDPDSALRARTAVVCIDDDAG-RAMAARAADAITVSAADRPAHWRATDVA 314

Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
             D   +  +   PA GV   + +    + GR+N  N  VA   +  +  GV  E     
Sbjct: 315 PTDAGGQQFTAIDPA-GVGHHIGIR---LPGRYNVANCLVALAILDTV--GVSPEQAVPG 368

Query: 249 IEILRTPPHRMQIVHRDIQGVT 270
           +  +R  P R++ + R  QG  
Sbjct: 369 LREIR-VPGRLEQIDRG-QGFL 388

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454

 Score = 77.2 bits (191), Expect = 6e-16
 Identities = 45/251 (17%), Positives = 78/251 (31%), Gaps = 42/251 (16%)

Query: 42  SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN----PLSEAAFHCIALPSSKP 97
           ++ + AVTG+NGK+T    +  +L+         GN  N    P +        +     
Sbjct: 99  TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYT--------VLHMPE 150

Query: 98  KFQVAVVEVSSYQM------EIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKC 147
             +  V+E     M      +I          P  ++V  +   HL   K     A  K 
Sbjct: 151 GTEKLVLE-----MGQDHLGDI--HLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKM 203

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEVPAV 204
            +   M +  L L P      +      +   F            +     + +F+   +
Sbjct: 204 QIADGMASGSLLLAPADPIVEDYLPIDKKVVRFGQG--AELEITDLVERKDSLTFKANFL 261

Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
                L +      G++N  NA   A  V  L  GV  E +    + L    +R +    
Sbjct: 262 EQALDLPV-----TGKYNATNAM-IASYV-ALQEGVSEEQIRLAFQHLELTRNRTEWKKA 314

Query: 265 DIQGVTWVDDS 275
              G   + D 
Sbjct: 315 A-NGADILSDV 324

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 22/245 (8%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVG 75
           +  +L  G   +S   + ++ +     +L V GT+GK+T  + +  +L + G+     +G
Sbjct: 83  VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIG 142

Query: 76  GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-----YFCPTVSVVLNLTP 130
           G   N    A            +    V+E   Y     +K     ++ P  +V+ NL  
Sbjct: 143 GVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEF 202

Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTK----LGLLPFGNQHLNEAI-KGHRFNLAWIGAF 185
           DH +    +          F ++V T     L +     Q L + + KG    +   G  
Sbjct: 203 DHADIFADLGAIQTQ----FHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTE 258

Query: 186 PGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDV 242
            G +        SF+V   G    +++     +MGRHN  NA   +AA   +G+DI    
Sbjct: 259 HGWQAGEANADGSFDVLLDGKTAGRVKWD---LMGRHNRMNALAVIAAARHVGVDIQTAC 315

Query: 243 EALNS 247
           EAL +
Sbjct: 316 EALGA 320

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 49/246 (19%), Positives = 77/246 (31%), Gaps = 52/246 (21%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AVTGT+GK+T    V  +L HL      F+GG + +              +       V 
Sbjct: 118 AVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY-----EKGNG----PVVY 168

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E       +        F P   ++ N   DHLE +  ++  Y       F  +      
Sbjct: 169 ELDESEEFFS------EFSPNYLIITNARGDHLENYGNSLTRYRSA----FEKISR-NTD 217

Query: 160 LL-----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLH 213
           L+          HL +   G                          V   G    +L+L 
Sbjct: 218 LVVTFAEDELTSHLGDVTFG--VKKGTYTL---EMRSASRAEQKAMVEKNGKRYLELKLK 272

Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQIVHR-DIQG 268
              V G HN  NA  A +++    +G D+  +   +E    + R    R  I        
Sbjct: 273 ---VPGFHNVLNAL-AVIAL-FDSLGYDLAPVLEALEEFRGVHR----RFSIAFHDPETN 323

Query: 269 VTWVDD 274
           +  +DD
Sbjct: 324 IYVIDD 329

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 57/277 (20%)

Query: 46  LAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEA----AFHCIA-LPSSKPK 98
           +AV GT+GK+T  T +  +L++ GI+A   +GG      ++      F   + L + K  
Sbjct: 125 IAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDD 184

Query: 99  FQVA------VVEV----SSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
              +      V+E     S++  +     ++ P  +++ NL  DH +    +        
Sbjct: 185 SDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQ-- 242

Query: 148 HLFSHMVNTK----LGLLPFGNQHLNEAI------KGHRFNLAWIGAFPGVKIDTEAKT- 196
             F HMV         ++P     L + +         R ++         + D+  +  
Sbjct: 243 --FHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENS 300

Query: 197 -----------------ASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLD 237
                            + F V          L N  + G HN +NA  A+AA   +G+ 
Sbjct: 301 QAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS 360

Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
           +     AL++   I R    RM+++  D+  +   DD
Sbjct: 361 VKTACAALSAFAGIKR----RMELIG-DVNDILVFDD 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 8e-06
 Identities = 52/338 (15%), Positives = 107/338 (31%), Gaps = 80/338 (23%)

Query: 7   FLLEFQLKATGLACLLQSGKRVMS--ELDF---AAQVIPRSIKILAVTGTNGKSTVVTFV 61
           F+  F  K           K ++S  E+D    +   +  ++++     +  +  V  FV
Sbjct: 29  FVDNFDCKDV-----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 62  GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
            ++L           N    +S         PS   +  +   +      ++  KY    
Sbjct: 84  EEVLRI---------NYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHL-NEAIKGHR---- 176
           +   L L    L   +  KN  +              G+L  G   +  +    ++    
Sbjct: 134 LQPYLKLR-QALLELRPAKNVLI---D----------GVLGSGKTWVALDVCLSYKVQCK 179

Query: 177 --FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
             F + W+          E            V+  LQ   +      N+      + S  
Sbjct: 180 MDFKIFWLNL--KNCNSPET-----------VLEMLQ--KLLYQIDPNWT-----SRSDH 219

Query: 235 GLDIGVDVEALNSTI-EILRTPPH-RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
             +I + + ++ + +  +L++ P+    +V  ++       ++KA    A      +L  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----Q--NAKA--WNA-----FNL-- 264

Query: 293 HKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITE 330
             C ILL  + K +    S      I  L+HH   +T 
Sbjct: 265 -SCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTP 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 43/355 (12%), Positives = 88/355 (24%), Gaps = 109/355 (30%)

Query: 24  SGKRVMSELDFAAQVIPRSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAFVGGN 77
           SGK  +     A  V   S K+                     V +ML  L         
Sbjct: 161 SGKTWV-----ALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY------Q 208

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME--IPN--------------KYF--- 118
           +    +  + H   +     +      E+          N                F   
Sbjct: 209 IDPNWTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 119 CPTV------SVVLNLTPDHLERHKTMKNY--ALTKC---HLFSHMVNTKLGLLPFGNQH 167
           C  +       V   L+      H ++ ++   LT      L    ++ +   LP     
Sbjct: 266 CKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----- 319

Query: 168 LNEAIKGHRFNLAWIGA----FPGV-----KIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
             E +  +   L+ I                ++ +  T   E      ++ L+       
Sbjct: 320 -REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----SLNVLEPAEY--- 371

Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
            R  +       LSV        +            P   + ++        W D  K+ 
Sbjct: 372 -RKMFD-----RLSVFPPS--AHI------------PTILLSLI--------WFDVIKSD 403

Query: 279 NLEATCT----GLMDLKGHKCVILLGGQAKVLNGQESNGFE---KLIEPLNHHRC 326
            +          L++ +  +  I +      L  +  N +     +++  N  + 
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 35/248 (14%), Positives = 67/248 (27%), Gaps = 59/248 (23%)

Query: 1   MWMLWLFLLEFQLKATGLACLLQSGKRVMSEL--DFAAQVIPRSIKI----LAVTGTNGK 54
            W  W  +   +L     + L         ++    +  V P S  I    L++   +  
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVI 400

Query: 55  STVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE---VSSYQM 111
            + V     ++N L   + V               I L           +    V  Y  
Sbjct: 401 KSDV---MVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYN- 454

Query: 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA 171
               K F        +L P +L+       Y       +SH     +G       HL   
Sbjct: 455 --IPKTFDSD-----DLIPPYLD------QY------FYSH-----IG------HHLKNI 484

Query: 172 IKGHRF--------NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
               R         +  ++      KI  ++   +     +  + QL+ +   +      
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 224 HNAAVAAL 231
           +   V A+
Sbjct: 541 YERLVNAI 548

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 52/256 (20%), Positives = 88/256 (34%), Gaps = 60/256 (23%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           AV GT+GK+T    +  +     ++     GG + +    A      L +S+      + 
Sbjct: 122 AVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAH-----LGASR----YLIA 172

Query: 105 E----VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P VSVV N+ PDH++ ++   +    T    +   ++    
Sbjct: 173 EADESDASFL------HLQPMVSVVTNMEPDHMDTYEGDFEKMKAT----YVKFLH---- 218

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  L E +      +   G            +       + V     
Sbjct: 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNN 278

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
               + L+   V G+HN  NA  AAL+V   + G+  EA+   +       R    R   
Sbjct: 279 ERINVLLN---VPGKHNALNAT-AALAV-AKEEGIANEAILEALADFQGAGR----RFDQ 329

Query: 262 ---VHRDIQGVTWVDD 274
                R    V  VDD
Sbjct: 330 LGEFIRPNGKVRLVDD 345

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 65/261 (24%)

Query: 47  AVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           A+ GT+GK+T    V  +    G++     GG +      A      L   +      + 
Sbjct: 123 AIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHAR-----LGHGR----YLIA 173

Query: 105 EV----SSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
           E     +S+       +  P V++V N+  DH++ ++   +N   T    F + ++    
Sbjct: 174 EADESDASFL------HLQPMVAIVTNIEADHMDTYQGDFENLKQT----FINFLH---- 219

Query: 160 LLPFG--------NQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTASFEVPAVG- 205
            LPF         +  + E +          G                    F +     
Sbjct: 220 NLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDK 279

Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE----ILRTPPHRMQI 261
              ++ L+     GRHN  NAA AA++V   + G+D EA+   +E      R    R   
Sbjct: 280 EPMRVTLN---APGRHNALNAA-AAVAV-ATEEGIDDEAILRALESFQGTGR----RFDF 330

Query: 262 V--------HRDIQGVTWVDD 274
           +        +        VDD
Sbjct: 331 LGEFPLEPVNGKSGTAMLVDD 351

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	100.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	100.0
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	100.0
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	100.0
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	100.0
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	100.0
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	100.0
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	100.0
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	100.0
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	100.0
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	100.0
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	100.0
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	100.0
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	100.0
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	100.0
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	100.0
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	100.0
3mvn_A	163	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M	99.14
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.22
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.43
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	93.44
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.94
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	92.87
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	92.83
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	92.0
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	91.39
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	91.26
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	90.87
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	90.85
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	90.6
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	90.56
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	90.54
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	90.26
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	89.96
3end_A	307	Light-independent protochlorophyllide reductase ir	89.67
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	89.32
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	89.28
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	89.26
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	89.16
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	88.86
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	88.8
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	88.49
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	87.58
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	87.34
3cwq_A	209	Para family chromosome partitioning protein; alpha	86.73
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	86.59
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	86.29
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	85.46
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	84.84
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	84.73
2obn_A	349	Hypothetical protein; structural genomics, joint c	84.69
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	84.16
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	83.81
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	83.67
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	83.11
2g0t_A	350	Conserved hypothetical protein; structural genomic	83.04
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	82.64
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	82.35
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	82.26
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	82.0
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	81.44
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	81.08
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	80.9
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	80.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	80.34

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=100.00  E-value=5.5e-60  Score=453.38  Aligned_cols=304  Identities=23%  Similarity=0.381  Sum_probs=256.7

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      +++||+||+++++||++++|+++|+|+++++++++++.  +.++|+||||||||||++||+++|++.|+++.++||+|.|
T Consensus        73 ~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~  150 (451)
T 3lk7_A           73 FCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP  150 (451)
T ss_dssp             EEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred             CCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence            57999999999999999999999999999999999987  4599999999999999999999999999999999999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (331)
                      +.....       ...+.|++|+|+|+++++.+.. ++|+++|||||++||+|+|||+|+|+++|.+|++.+++++.+|+
T Consensus       151 ~~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~  222 (451)
T 3lk7_A          151 ASEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVL  222 (451)
T ss_dssp             HHHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEE
T ss_pred             hhhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            875432       1246789999999998876543 89999999999999999999999999999999999888999999


Q ss_pred             eCCChhhHHHHhccCccEEEeccCCCc-ccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059          162 PFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (331)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~  240 (331)
                      |.|||....+......++++||.+... ....  ....+.+.  +. ..+....++++|.||++|+++|+  +++..+|+
T Consensus       223 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi  295 (451)
T 3lk7_A          223 NFNQGISKELAKTTKATIVPFSTTEKVDGAYV--QDKQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGI  295 (451)
T ss_dssp             ETTSHHHHHHHTTCSSEEEEEESSSCCSSEEE--ETTEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTC
T ss_pred             ECCcHHHHHHHhhcCCeEEEEccCCCcCCEEE--ECCEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCC
Confidence            999999988887777788888865322 0000  01122222  21 11234579999999999999999  89999999


Q ss_pred             CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP  320 (331)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~  320 (331)
                      +.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|+.++++.++.+|+++|+|++.+.      .||+++++.
T Consensus       296 ~~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~------~d~~~l~~~  368 (451)
T 3lk7_A          296 SNQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRG------NEFDELIPD  368 (451)
T ss_dssp             CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCS------CCCGGGHHH
T ss_pred             CHHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHH
Confidence            99999999999999999999996 46789999998899999999999999755689999877542      268889888


Q ss_pred             hcceeEEEe
Q 020059          321 LNHHRCVIT  329 (331)
Q Consensus       321 l~~~~~~i~  329 (331)
                      +.+.+.+|+
T Consensus       369 l~~~d~vi~  377 (451)
T 3lk7_A          369 ITGLKHMVV  377 (451)
T ss_dssp             HTTCSEEEE
T ss_pred             HHhcCEEEE
Confidence            876666654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=100.00  E-value=4.6e-56  Score=424.94  Aligned_cols=299  Identities=27%  Similarity=0.394  Sum_probs=245.8

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~   81 (331)
                      .++||+||+++++||++..|++++++++++++++++.+  +.++|+||||||||||++||+++|++.|++++++||+|.|
T Consensus        65 ~d~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~  142 (439)
T 2x5o_A           65 ADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP  142 (439)
T ss_dssp             CSEEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBC
T ss_pred             CCEEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHH
Confidence            36899999999999999999999999999999999987  5899999999999999999999999999999999999999


Q ss_pred             chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceEE
Q 020059           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL  160 (331)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v  160 (331)
                      ++...         ..+.|++|+|+|+++++.++. ++|+++|||||++||+|+| +|+|+|+++|.++++.   ++.+|
T Consensus       143 ~~~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V  209 (439)
T 2x5o_A          143 ALMLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCV  209 (439)
T ss_dssp             HHHHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEE
T ss_pred             HHHHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEE
Confidence            87542         123589999999998887654 7999999999999999999 7999999999999983   68999


Q ss_pred             EeCCChhhHHHHhccCccEEEeccCCC-cc-cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc
Q 020059          161 LPFGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI  238 (331)
Q Consensus       161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l  238 (331)
                      +|.|||....+... ..++++||.... +. +...  ...+.+. .+. ..+....++++|.||++|+++|+  +++..+
T Consensus       210 ~n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~l  282 (439)
T 2x5o_A          210 VNADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAA  282 (439)
T ss_dssp             EETTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHT
T ss_pred             EeCCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHc
Confidence            99999987665543 456788885421 00 1001  1112221 121 11223478999999999999999  899999


Q ss_pred             CCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCC-CcEEEEEcCCCCCCCCccCCChhhh
Q 020059          239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKL  317 (331)
Q Consensus       239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~~~i~V~G~~~~~g~~~~~~~~~~l  317 (331)
                      |++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|+.++++.++. +|+++|+|+|.+.+      |++++
T Consensus       283 gi~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~------~~~~~  355 (439)
T 2x5o_A          283 GLPRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA------DFSPL  355 (439)
T ss_dssp             TCCHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTC------CCGGG
T ss_pred             CCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCC------CHHHH
Confidence            9999999999999999999999996 3577899999889999999999999963 68999999987665      46678


Q ss_pred             hhhhcc-eeEEEe
Q 020059          318 IEPLNH-HRCVIT  329 (331)
Q Consensus       318 ~~~l~~-~~~~i~  329 (331)
                      ++.+.+ .+.+++
T Consensus       356 ~~~l~~~~d~vi~  368 (439)
T 2x5o_A          356 ARYLNGDNVRLYC  368 (439)
T ss_dssp             GGGSCSSSEEEEE
T ss_pred             HHHHHhhCCEEEE
Confidence            888764 454443

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=1.1e-54  Score=423.30  Aligned_cols=295  Identities=20%  Similarity=0.223  Sum_probs=221.7

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee-ecc----
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGG----   76 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~-~~g----   76 (331)
                      .++||+||+++++||++++|+++|+|++++.+++++.+.+..++|+||||||||||++|++++|++.|++++ +.|    
T Consensus        81 ~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~  160 (524)
T 3hn7_A           81 PDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPL  160 (524)
T ss_dssp             CSEEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBC
T ss_pred             CCEEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEec
Confidence            478999999999999999999999999999999998542467899999999999999999999999998764 222    


Q ss_pred             ----------cCcccchhhhhhcccCCCCCCCCcEEEEEecccccccc---C--ceecccEEEEecCChhhhhccCCHHH
Q 020059           77 ----------NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---N--KYFCPTVSVVLNLTPDHLERHKTMKN  141 (331)
Q Consensus        77 ----------~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~---~--~~~~p~i~viTni~~dHl~~~gt~e~  141 (331)
                                ++|.|.......  .....+.+++++|+|+|+++....   .  ..++|+++|||||++||+|+|||+|+
T Consensus       161 ~~~T~~nln~~ig~~~~~~~~~--~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~  238 (524)
T 3hn7_A          161 VNTTDTNLQQVFAHSSYLGTEK--DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDA  238 (524)
T ss_dssp             CCSSCHHHHHHTTSSEECCCCC--CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHH
T ss_pred             cccCchhhhhhhhhHHhhCCCc--ccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHH
Confidence                      223332110000  000002346899999999765421   1  13799999999999999999999999


Q ss_pred             HHHHHHHhccccCCCceEEEeCCChhhHHHHhc-cCccEEEeccCC--------------------Cccccc---ccccc
Q 020059          142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP--------------------GVKIDT---EAKTA  197 (331)
Q Consensus       142 ~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~---~~~~~  197 (331)
                      |+++|.++++.+++++.+|+|.|||.+..+... ...++++||...                    +.++..   .....
T Consensus       239 y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~  318 (524)
T 3hn7_A          239 IQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGS  318 (524)
T ss_dssp             HHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTT
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCce
Confidence            999999999999889999999999999887643 345678888531                    111100   00122


Q ss_pred             eEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCC
Q 020059          198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA  277 (331)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a  277 (331)
                      .|.+...+....+..+.++++|.||++|+++|+  +++..+|++.+.|+++|++|++++||||++. ..+++.+|||+ +
T Consensus       319 ~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-a  394 (524)
T 3hn7_A          319 QFTVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-A  394 (524)
T ss_dssp             EEEEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-C
T ss_pred             EEEEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-C
Confidence            333333332200223579999999999999999  8999999999999999999999999999996 45789999997 8


Q ss_pred             CCHHHHHHHHhccC----CCcEEEEEcCC
Q 020059          278 TNLEATCTGLMDLK----GHKCVILLGGQ  302 (331)
Q Consensus       278 ~np~s~~~al~~~~----~~~~i~V~G~~  302 (331)
                      |||++++++++.++    ++|+++|||++
T Consensus       395 hnp~~~~a~l~~l~~~~~~~r~i~V~g~~  423 (524)
T 3hn7_A          395 HHPTAITTTLDGAKKKLADRRLWAIIEPR  423 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence            99999999988763    46899999985

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=100.00  E-value=1.4e-54  Score=419.72  Aligned_cols=307  Identities=15%  Similarity=0.220  Sum_probs=236.0

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCC-eeecccCcc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGN   80 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~-~~~~g~~g~   80 (331)
                      .++||+||+++++||++++|+++|+|++++++++++++ +..++|+||||||||||++||+++|++.|++ +...|+++.
T Consensus        82 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~  160 (494)
T 4hv4_A           82 ASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVK  160 (494)
T ss_dssp             CSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccc
Confidence            47899999999999999999999999999999999887 4568999999999999999999999999985 334343322


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceE
Q 020059           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG  159 (331)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~  159 (331)
                      ++.....        ..+.+++|+|+|++....  ..++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+
T Consensus       161 ~~g~~~~--------~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~  230 (494)
T 4hv4_A          161 AAGTHAR--------LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA  230 (494)
T ss_dssp             TTTEEEE--------CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ccccccc--------cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEE
Confidence            2221110        135789999999765432  247999999999999999999 79999999999999988888999


Q ss_pred             EEeCCChhhHHHHhccCccEEEeccCCCccccc-----ccccceEEEecCce-eEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059          160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGV-VSQLQLHNMKVMGRHNYHNAAVAALSV  233 (331)
Q Consensus       160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~l~l~G~~n~~NalaA~~~a  233 (331)
                      |+|.|||....+......++.+||...+.++..     +.....|.+...+. ...   +.++++|+||++|+++|+  +
T Consensus       231 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a  305 (494)
T 4hv4_A          231 VMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIE---VTLNAPGRHNALNAAAAV--A  305 (494)
T ss_dssp             EEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEE---EEESSCSHHHHHHHHHHH--H
T ss_pred             EEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEE---EEecCCcHHHHHHHHHHH--H
Confidence            999999999988877667888888643222111     11122333332221 112   468999999999999999  8


Q ss_pred             HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---------CcEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEEc
Q 020059          234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG  300 (331)
Q Consensus       234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~G  300 (331)
                      ++..+|++.+.|+++|++|++++||||++. ..         +++.+||| |||||++++++++.+    +++|+++|+|
T Consensus       306 ~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~~~~~rii~V~g  383 (494)
T 4hv4_A          306 VATEEGIEDEDILRALVGFQGTGRRFDFLG-NFPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQ  383 (494)
T ss_dssp             HHHHHTCCHHHHHHHHHHCCCBTTSSEEEE-EEESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             HHHHcCCCHHHHHHHHHhCCCCCCccEEee-eccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEEc
Confidence            999999999999999999999999999996 33         48999999 599999999987765    2458899998


Q ss_pred             CCCCCCCCccCCChhhhhhhhcceeEEEe
Q 020059          301 GQAKVLNGQESNGFEKLIEPLNHHRCVIT  329 (331)
Q Consensus       301 ~~~~~g~~~~~~~~~~l~~~l~~~~~~i~  329 (331)
                      .......   ...+.+++..+...+.+|+
T Consensus       384 ~~~~~r~---k~~~~~~~~~~~~aD~vil  409 (494)
T 4hv4_A          384 PHRYTRT---RDLYDDFANVLSQVDVLLM  409 (494)
T ss_dssp             CBCHHHH---HHTHHHHHHHHTTSSEEEE
T ss_pred             CCCCCch---HHHHHHHHHHHhcCCEEEE
Confidence            6431110   0124455555555555543

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.6e-53  Score=408.66  Aligned_cols=308  Identities=20%  Similarity=0.268  Sum_probs=224.7

Q ss_pred             eeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----Cc
Q 020059            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG   79 (331)
Q Consensus         4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g   79 (331)
                      .+|.++.++++.|.+.  +++..++|++++...+.. .+.++|+||||||||||++||+++|++.|...++.|+    +|
T Consensus        64 ~vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig  140 (452)
T 1gg4_A           64 ALLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG  140 (452)
T ss_dssp             EEEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred             EEEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcc
Confidence            4667776655556544  345556667777666543 3679999999999999999999999999976666666    44


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEeccc-cccc--cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~-~~~~--~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~  156 (331)
                      .|.+...        ...++|++|+|+|++ .++.  ....++|+++|||||++||+|+|||+|+|+++|++|++.++++
T Consensus       141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~  212 (452)
T 1gg4_A          141 VPMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN  212 (452)
T ss_dssp             HHHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTT
T ss_pred             hhHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccC
Confidence            4543221        145689999999964 4442  2223789999999999999999999999999999999988888


Q ss_pred             ceEEEeCCChhhHHHHh-ccCccEEEeccCC---Ccccc---cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHH
Q 020059          157 KLGLLPFGNQHLNEAIK-GHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA  229 (331)
Q Consensus       157 ~~~v~n~dd~~~~~~~~-~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA  229 (331)
                      +.+|+|.|||....+.. ....++++||...   ++...   .......|.+...+...   .+.++++|+||++|+++|
T Consensus       213 ~~~V~n~dd~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~NalaA  289 (452)
T 1gg4_A          213 GIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALAA  289 (452)
T ss_dssp             CEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHHH
T ss_pred             CEEEEeCCcHHHHHHHHhhcCCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHHH
Confidence            99999999998877632 1145778888642   22110   01111233333222222   247899999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCCCCCC
Q 020059          230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLN  307 (331)
Q Consensus       230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~~~g~  307 (331)
                      +  +++..+|++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.++  ++|+++|+|+|.++|+
T Consensus       290 ~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g~  366 (452)
T 1gg4_A          290 A--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGA  366 (452)
T ss_dssp             H--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTT
T ss_pred             H--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccCC
Confidence            9  8999999999999999999999999999996 356789999988999999999998874  2689999999999998


Q ss_pred             CccCCChhhhhhhhcc--eeEEEe
Q 020059          308 GQESNGFEKLIEPLNH--HRCVIT  329 (331)
Q Consensus       308 ~~~~~~~~~l~~~l~~--~~~~i~  329 (331)
                      +++ .+++++.+.+.+  .+.+|+
T Consensus       367 ~~~-~~~~~~~~~~~~~~~d~vi~  389 (452)
T 1gg4_A          367 ESE-ACHVQVGEAAKAAGIDRVLS  389 (452)
T ss_dssp             HHH-HHHHHHHHHHHHHTCSEEEE
T ss_pred             hhH-HHHHHHHHHHHHcCCCEEEE
Confidence            763 347778887753  455554

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=100.00  E-value=7e-54  Score=411.65  Aligned_cols=303  Identities=18%  Similarity=0.179  Sum_probs=231.1

Q ss_pred             eeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----Cc
Q 020059            4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG   79 (331)
Q Consensus         4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g   79 (331)
                      .+|.++.++ +.|.+.  +++..++|++++..++.. .+.++|+||||||||||++||+++|++.|+++.+.|+    +|
T Consensus        65 ~vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig  140 (454)
T 2am1_A           65 VTLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEK-TTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIG  140 (454)
T ss_dssp             EEEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHH-HCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred             EEEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccc
Confidence            567777765 566554  355556677777766543 2678999999999999999999999999987777777    45


Q ss_pred             ccchhhhhhcccCCCCCCCCcEEEEEecccc-ccc--cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059           80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT  156 (331)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~-~~~--~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~  156 (331)
                      .|.+...        ...++|++|+|+|+++ ++.  ....++|+++|||||++||+|+|||+|+|+++|++|++.++++
T Consensus       141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~  212 (454)
T 2am1_A          141 LPYTVLH--------MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASG  212 (454)
T ss_dssp             HHHHHHT--------CCTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTT
T ss_pred             hHHHHhc--------CCCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccC
Confidence            5544322        1457899999999854 342  2223789999999999999999999999999999999988888


Q ss_pred             ceEEEeCCChhhHHHHhccCccEEEeccCCCccc---ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059          157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV  233 (331)
Q Consensus       157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a  233 (331)
                      +.+|+|.|| ....+... ..++++||...+.++   ..+.....|.+...+.     .+.++++|.||++|+++|+  +
T Consensus       213 ~~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~--a  283 (454)
T 2am1_A          213 SLLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS--Y  283 (454)
T ss_dssp             CEEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--H
T ss_pred             CEEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--H
Confidence            999999999 76655544 457788886432211   0001111233321111     2468999999999999999  8


Q ss_pred             HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---C---CcEEEEEcCCCCCCC
Q 020059          234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKVLN  307 (331)
Q Consensus       234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~---~~~i~V~G~~~~~g~  307 (331)
                      ++..+|++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.++   .   +|+++|+|+|.+.|+
T Consensus       284 ~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G~  362 (454)
T 2am1_A          284 VALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGD  362 (454)
T ss_dssp             HHHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCT
T ss_pred             HHHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcCc
Confidence            999999999999999999999999999995 345788999988999999999998874   2   689999999999998


Q ss_pred             CccCCChhhhhhhhcc--eeEEEe
Q 020059          308 GQESNGFEKLIEPLNH--HRCVIT  329 (331)
Q Consensus       308 ~~~~~~~~~l~~~l~~--~~~~i~  329 (331)
                      .+. .+++++.+.+.+  .+.+|+
T Consensus       363 ~~~-~~~~~~~~~~~~~~~d~vi~  385 (454)
T 2am1_A          363 QSV-QLHNQMILSLSPDVLDIVIF  385 (454)
T ss_dssp             THH-HHHHHGGGGCCTTTCSEEEE
T ss_pred             HHH-HHHHHHHHHHHhcCCCEEEE
Confidence            763 347788887754  455554

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=100.00  E-value=6e-52  Score=401.62  Aligned_cols=306  Identities=16%  Similarity=0.202  Sum_probs=235.9

Q ss_pred             eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe-e-ecccCcc
Q 020059            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGN   80 (331)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~-~-~~g~~g~   80 (331)
                      .+||+|++++++||++++|+++++|++++.+.+.+++ ++.++|+||||||||||++||+++|++.|+++ . ++|+++.
T Consensus        80 ~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~  158 (491)
T 2f00_A           80 SVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKA  158 (491)
T ss_dssp             SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred             CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeecc
Confidence            5799999999999999999999999999999999887 45799999999999999999999999999863 2 4565542


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceE
Q 020059           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG  159 (331)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~  159 (331)
                      +....         ...+.|++|+|+|+.+..  ...++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus       159 ~~~~~---------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~  227 (491)
T 2f00_A          159 AGVHA---------RLGHGRYLIAEADESDAS--FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA  227 (491)
T ss_dssp             TTEEE---------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ccccc---------cCCCCCEEEEEeCCCccc--hhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence            21111         123578999999965432  2346899999999999999999 79999999999999988888999


Q ss_pred             EEeCCChhhHHHHhccCccEEEeccCCCccccc-----ccccceEEEecCc-eeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059          160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSV  233 (331)
Q Consensus       160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~l~l~G~~n~~NalaA~~~a  233 (331)
                      |+|.|||....+......++++||.....++..     +.....|.+...+ ...   .+.++++|.||++|+++|+  +
T Consensus       228 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a  302 (491)
T 2f00_A          228 VMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--A  302 (491)
T ss_dssp             EEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--H
T ss_pred             EEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--H
Confidence            999999998888776666788888643221110     1111233332212 111   2468999999999999999  8


Q ss_pred             HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeec-------Cc-EEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcC
Q 020059          234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG  301 (331)
Q Consensus       234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~-~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~  301 (331)
                      ++..+|++.+.|+++|++|+++|||||++....       ++ +.|||| |||||++++++++.++    .+|+++|+|.
T Consensus       303 ~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~  381 (491)
T 2f00_A          303 VATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQP  381 (491)
T ss_dssp             HHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECC
T ss_pred             HHHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECC
Confidence            899999999999999999999999999996211       36 899999 5999999999877763    3578889987


Q ss_pred             CCCCCCCccCCChhhhhhhhcceeEEEe
Q 020059          302 QAKVLNGQESNGFEKLIEPLNHHRCVIT  329 (331)
Q Consensus       302 ~~~~g~~~~~~~~~~l~~~l~~~~~~i~  329 (331)
                      +....+   ...+.++.+.+...+.+|+
T Consensus       382 ~~~~r~---k~~~~~~~~~~~~~d~vil  406 (491)
T 2f00_A          382 HRFTRT---RDLYDDFANVLTQVDTLLM  406 (491)
T ss_dssp             BCHHHH---TTTHHHHHHHHTTSSEEEE
T ss_pred             CCCcch---HHHHHHHHHHHHhCCEEEE
Confidence            421110   1125677776665555554

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=100.00  E-value=3.1e-52  Score=402.27  Aligned_cols=307  Identities=17%  Similarity=0.194  Sum_probs=236.0

Q ss_pred             eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe-e-ecccCcc
Q 020059            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGN   80 (331)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~-~-~~g~~g~   80 (331)
                      .+||+|++++++||++++|+++++|++++.+.+.+++ ++.++|+||||||||||++||+++|++.|+++ . ++|+++.
T Consensus        79 ~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~  157 (475)
T 1p3d_A           79 SVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS  157 (475)
T ss_dssp             SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred             CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCcccc
Confidence            5799999999999999999999999999999998887 45799999999999999999999999999863 2 4565542


Q ss_pred             cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceE
Q 020059           81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG  159 (331)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~  159 (331)
                      .-...         ...+.|++|+|+|+.+..  ...++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus       158 ~~~~~---------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~  226 (475)
T 1p3d_A          158 AGKNA---------HLGASRYLIAEADESDAS--FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA  226 (475)
T ss_dssp             TTEEE---------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ccccc---------ccCCCCEEEEEecCCcCc--cccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence            21111         123578999999965432  2346899999999999999999 79999999999999988888999


Q ss_pred             EEeCCChhhHHHHhccCccEEEeccCCCccccc-----ccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHH
Q 020059          160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL  234 (331)
Q Consensus       160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~  234 (331)
                      |+|.|||....+......++++||...+.++..     +.....|.+...+...  ..+.++++|+||++|+++|+  ++
T Consensus       227 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~--~~~~l~l~G~hn~~NalaAi--a~  302 (475)
T 1p3d_A          227 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNER--INVLLNVPGKHNALNATAAL--AV  302 (475)
T ss_dssp             EEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCE--EEEEESSCSHHHHHHHHHHH--HH
T ss_pred             EEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeE--EEEEEcCccHHHHHHHHHHH--HH
Confidence            999999998887765556788888643221110     1112233332222110  12478999999999999999  89


Q ss_pred             HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---CcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCC
Q 020059          235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLN  307 (331)
Q Consensus       235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~  307 (331)
                      +..+|++.+.|+++|++|+++|||||++....   +++.+||| |||||++++++++.++    .+|+++|+|.+....+
T Consensus       303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r~  381 (475)
T 1p3d_A          303 AKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRT  381 (475)
T ss_dssp             HHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHH
T ss_pred             HHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCccH
Confidence            99999999999999999999999999996211   37899999 5999999999877763    3688999987531110


Q ss_pred             CccCCChhhhhhhhcceeEEEe
Q 020059          308 GQESNGFEKLIEPLNHHRCVIT  329 (331)
Q Consensus       308 ~~~~~~~~~l~~~l~~~~~~i~  329 (331)
                         ...+.++.+.++..+.+|+
T Consensus       382 ---~~~~~~~~~~~~~~d~vi~  400 (475)
T 1p3d_A          382 ---RDLFDDFVQVLSQVDALIM  400 (475)
T ss_dssp             ---HHTHHHHHHHHTTSSEEEE
T ss_pred             ---HHHHHHHHHHHHhCCEEEE
Confidence               0125677776665555554

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=5.4e-50  Score=385.56  Aligned_cols=294  Identities=18%  Similarity=0.163  Sum_probs=220.2

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCC--CCcEEEEeCCCChHhHHHHHHHHHHhcCCCee--eccc
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGN   77 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~--~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~--~~g~   77 (331)
                      .++||+||+++++||++++|+++|+|++++.+++.++. +  +.++|+||||||||||++||+++|++.|++++  ++|+
T Consensus        72 ~d~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~  150 (469)
T 1j6u_A           72 PDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGI  150 (469)
T ss_dssp             CSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCEEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCe
Confidence            36899999999999999999999999999999998877 4  57899999999999999999999999999863  4555


Q ss_pred             Ccccc-hhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCC-HHHHHHHHHHhccccCC
Q 020059           78 LGNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVN  155 (331)
Q Consensus        78 ~g~~~-~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt-~e~~~~~K~~i~~~~~~  155 (331)
                      +...- ....+         .+.+ +|+|+|+++.  ....++|+++|||||++||+|+||| +|+|+++|.+++..++ 
T Consensus       151 ~~~~g~~~~~~---------~~~~-~V~E~~~~~~--~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~-  217 (469)
T 1j6u_A          151 MDSLEHGNYEK---------GNGP-VVYELDESEE--FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD-  217 (469)
T ss_dssp             CTTSTTSSEEC---------CSSC-EEEEECTTSG--GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS-
T ss_pred             ecccCcccccc---------CCCC-EEEECCCccC--ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC-
Confidence            43321 11111         1346 9999998853  2334799999999999999999997 9999999999987653 


Q ss_pred             CceEEEeCCChhhHHHHhccCccEEEeccCC-Cccc--cccccc-ceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHH
Q 020059          156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL  231 (331)
Q Consensus       156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~  231 (331)
                        .+|+|.|||....+      ++++||... ++..  ..+... ..|.+...+..  +..+.++++|.||++|+++|+ 
T Consensus       218 --~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi-  286 (469)
T 1j6u_A          218 --LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI-  286 (469)
T ss_dssp             --EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH-
T ss_pred             --EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH-
Confidence              89999999976432      567777532 1111  001111 22333222221  123478999999999999999 


Q ss_pred             HHHHHHcCCCHHHHHHHhhcCCCCCCceeEE--eeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcC--CC
Q 020059          232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QA  303 (331)
Q Consensus       232 ~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~--~~  303 (331)
                       +++..+|++.+.|+++|++|+++|||||++  . ..+++.+||| |||||++++++++.++    .+|+++|+|.  ..
T Consensus       287 -a~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~  363 (469)
T 1j6u_A          287 -ALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYS  363 (469)
T ss_dssp             -HHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--
T ss_pred             -HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCC
Confidence             899999999999999999999999999999  4 3578999999 5999999998877653    3678889873  22


Q ss_pred             CCCCCccCCC-hhhhhhhhcceeEEEe
Q 020059          304 KVLNGQESNG-FEKLIEPLNHHRCVIT  329 (331)
Q Consensus       304 ~~g~~~~~~~-~~~l~~~l~~~~~~i~  329 (331)
                       ++     .+ +.++.+.++..+.+|+
T Consensus       364 -r~-----~~~~~~l~~~~~~~d~vil  384 (469)
T 1j6u_A          364 -RL-----EREDGNFAKALQLADEVVV  384 (469)
T ss_dssp             ------------CHHHHHHTTSSEEEE
T ss_pred             -cc-----HHHHHHHHHHHhcCCEEEE
Confidence             21     13 4566665555555544

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.3e-48  Score=378.92  Aligned_cols=267  Identities=21%  Similarity=0.176  Sum_probs=202.3

Q ss_pred             CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCC-----------CCCCCCcEEEEEeccc
Q 020059           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY  109 (331)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~VlE~~~~  109 (331)
                      +.++|+||||||||||++||+++|++.|+++++.|+.+.++....... .+++           +...+++++|+|+|++
T Consensus       107 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~  186 (498)
T 1e8c_A          107 NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH  186 (498)
T ss_dssp             SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             cCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence            578999999999999999999999999999998888877655432211 1111           0145689999999987


Q ss_pred             cccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCc---cEEEeccC
Q 020059          110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIGAF  185 (331)
Q Consensus       110 ~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~~~  185 (331)
                      +++..+. .++|+++|||||+.||+|+|||+|+|+++|++|++. ++++.+|+|.|||....+......   ++++||..
T Consensus       187 ~l~~~rl~~~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~  265 (498)
T 1e8c_A          187 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHIN  265 (498)
T ss_dssp             HHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCC
T ss_pred             hhhcccccccCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecC
Confidence            7653221 268999999999999999999999999999999987 567899999999998887765433   56666643


Q ss_pred             CCc---cccc-----ccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 020059          186 PGV---KIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH  257 (331)
Q Consensus       186 ~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~g  257 (331)
                      ...   ++..     ......|.+...+...   .+.++++|.||++|+++|+  +++..+|++.+.|+++|++|+++||
T Consensus       266 ~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~~g  340 (498)
T 1e8c_A          266 PNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPVCG  340 (498)
T ss_dssp             TTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCTT
T ss_pred             CCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCC
Confidence            211   1110     0111223332221111   2468999999999999999  8999999999999999999999999


Q ss_pred             ceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059          258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL  321 (331)
Q Consensus       258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l  321 (331)
                      |||++. ..+++.+|+| |||||+|++++++.++   ++|+++|||+..++..     .+++++..+
T Consensus       341 R~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~~-----~~~~~~~~~  400 (498)
T 1e8c_A          341 RMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK-----GKRPLMGAI  400 (498)
T ss_dssp             SSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCS-----THHHHHHHH
T ss_pred             ceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcch-----hHHHHHHHH
Confidence            999995 3457789999 6999999999988874   4689999998665522     356555444

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=100.00  E-value=5.7e-48  Score=355.16  Aligned_cols=247  Identities=17%  Similarity=0.186  Sum_probs=193.7

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee-ec----c
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VG----G   76 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~-~~----g   76 (331)
                      .++||+||+++++||++++|+++|+|++++++++++.+.++.++|+||||||||||++||+++|++.|+++. +.    |
T Consensus        67 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~  146 (326)
T 3eag_A           67 ADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPE  146 (326)
T ss_dssp             CSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEET
T ss_pred             CCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceec
Confidence            478999999999999999999999999999999987532467899999999999999999999999998864 22    5


Q ss_pred             cCcccchhhhhhcccCCCCCCCCcEEEEEecccccccc-----CceecccEEEEecCChhhhhccCCHHHHHHHHHHhcc
Q 020059           77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS  151 (331)
Q Consensus        77 ~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~-----~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~  151 (331)
                      |+|.+.....-.  .. ....+.+++|+|+|+++....     ...++|+++|||||++||+|+|||+|+|+++|.+|++
T Consensus       147 n~~~~~~~~~p~--~~-~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~  223 (326)
T 3eag_A          147 NFGVSARLPQTP--RQ-DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVR  223 (326)
T ss_dssp             TSSCSEECCCCC--SS-CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHT
T ss_pred             cCCcceecCCcc--cc-ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHH
Confidence            666653211000  00 123467899999999765421     1237999999999999999999999999999999999


Q ss_pred             ccCCCceEEEeCCChhhHHHHhc-cCccEEEeccCCCccccc-ccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHH
Q 020059          152 HMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA  229 (331)
Q Consensus       152 ~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA  229 (331)
                      .+++++.+|+|.|||....+... ...++.+||...++.... ..... |.+...+..  +..+.++++|+||++|+++|
T Consensus       224 ~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaA  300 (326)
T 3eag_A          224 TVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAV  300 (326)
T ss_dssp             TSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHH
T ss_pred             hCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHH
Confidence            98889999999999999887654 345678888543332110 01122 444333432  22358999999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 020059          230 ALSVLGLDIGVDVEALNSTIEILRTPP  256 (331)
Q Consensus       230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~  256 (331)
                      +  +++..+|++.+.|+++|++|++++
T Consensus       301 i--a~a~~lGi~~~~i~~~L~~f~gv~  325 (326)
T 3eag_A          301 I--AAARHVGVDIQTACEALGAFKNVK  325 (326)
T ss_dssp             H--HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred             H--HHHHHcCCCHHHHHHHHHhCCCCC
Confidence            9  899999999999999999999854

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=100.00  E-value=4.5e-48  Score=377.68  Aligned_cols=256  Identities=22%  Similarity=0.247  Sum_probs=198.3

Q ss_pred             CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCC-----------CCCCCCcEEEEEeccc
Q 020059           42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY  109 (331)
Q Consensus        42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~VlE~~~~  109 (331)
                      +.++|+||||||||||++||+++|++.|+++++.|+.+..+....... .+++           +.+.+++++|+|+|++
T Consensus       145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~  224 (535)
T 2wtz_A          145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH  224 (535)
T ss_dssp             SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence            568999999999999999999999999999999888776655332111 1111           1135789999999987


Q ss_pred             cccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccC--CCceEEEeCCChhhHHHHhccCccEEEeccCC
Q 020059          110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP  186 (331)
Q Consensus       110 ~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~  186 (331)
                      +++..+. .++|+++|||||+.||+|+|||+|+|+++|++|++.++  +++.+|+|.|||....+..... ++++||...
T Consensus       225 ~l~~~rl~~~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~~  303 (535)
T 2wtz_A          225 ALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAAD  303 (535)
T ss_dssp             HHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESSS
T ss_pred             cccccccccCCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecCC
Confidence            6543222 26899999999999999999999999999999999765  5689999999999887765433 678888643


Q ss_pred             Cc-ccc-----cc-cccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCce
Q 020059          187 GV-KID-----TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM  259 (331)
Q Consensus       187 ~~-~~~-----~~-~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~  259 (331)
                      .. ++.     .+ .....|.+...+...  ..+.++++|.||++|+++|+  +++..+|++.+.|+++|++|+ +||||
T Consensus       304 ~~~d~~~~~i~~~~~~g~~f~~~~~~~~~--~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR~  378 (535)
T 2wtz_A          304 RPAHWRATDVAPTDAGGQQFTAIDPAGVG--HHIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGRL  378 (535)
T ss_dssp             SCCSEEEEEEEEETTTEEEEEEECTTSCE--EEEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTSS
T ss_pred             CcCcEEEEEEEEcCCCCeEEEEEeCCceE--EEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCce
Confidence            21 111     01 112234433222110  12478999999999999999  899999999999999999999 89999


Q ss_pred             eEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCCCC
Q 020059          260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKV  305 (331)
Q Consensus       260 e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~~~  305 (331)
                      |++. ..++..+|+| |||||+|++++++.++  .+|+++|||+++++
T Consensus       379 e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr  424 (535)
T 2wtz_A          379 EQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDR  424 (535)
T ss_dssp             EECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTS
T ss_pred             EEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCcc
Confidence            9995 3457778888 6999999999999885  46899999998765

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=100.00  E-value=6e-46  Score=358.42  Aligned_cols=284  Identities=17%  Similarity=0.179  Sum_probs=207.0

Q ss_pred             CeeeeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCc------------ccchhhhhh--
Q 020059           26 KRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG------------NPLSEAAFH--   88 (331)
Q Consensus        26 ~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g------------~~~~~~~~~--   88 (331)
                      .+.|.|+..+.+.+.   ++.++|+||||||||||++||+++|++.|+++++.++.+            .+++...+.  
T Consensus        44 ~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~  123 (487)
T 2vos_A           44 DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVAT  123 (487)
T ss_dssp             CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHH
Confidence            346788888887662   467899999999999999999999999999996544421            111110000  


Q ss_pred             -----c---------------ccCC--------------CCCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhh
Q 020059           89 -----C---------------IALP--------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHL  133 (331)
Q Consensus        89 -----~---------------~~~~--------------~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl  133 (331)
                           .               ...+              +.+.++|++|+|+|++ .++.++ .++|+++|||||+.||+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn-~i~p~vaVITnI~~DHl  202 (487)
T 2vos_A          124 YREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATN-VINAPVAVITPISIDHV  202 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTC-SSCCSEEEECCCCCCBC
T ss_pred             HHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcccccc-ccCCCEEEECCcchhhh
Confidence                 0               0000              0145789999999986 556554 47999999999999999


Q ss_pred             hccC-CHHHHHHHHHHhcccc---CCCceEEEeCCChhhHHHHh----ccCccEEEeccCCCccccc---ccccceEEEe
Q 020059          134 ERHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEVP  202 (331)
Q Consensus       134 ~~~g-t~e~~~~~K~~i~~~~---~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  202 (331)
                      ++|| |+|+|+++|++|++.+   ++++.+|+|.|||....+..    ....++.+++.+  +.+..   ......|.+.
T Consensus       203 d~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d--~~~~~~~~~~~g~~~~~~  280 (487)
T 2vos_A          203 DYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSE--FAVLRRQIAVGGQVLQLQ  280 (487)
T ss_dssp             SCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTT--BEEEEEEEETTEEEEEEE
T ss_pred             hhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCc--eEEEeeccccCCceEEEe
Confidence            9999 9999999999999764   67889999999998655432    223466677642  21110   0112234333


Q ss_pred             cCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcC
Q 020059          203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS  275 (331)
Q Consensus       203 ~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l-------g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~  275 (331)
                      ..+..+  ..+.++++|.||++|+++|+  +++..+       |++.+.|+++|++|+ .|||||++.  . +..+|+| 
T Consensus       281 ~~~~~~--~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~-~~~vi~D-  351 (487)
T 2vos_A          281 GLGGVY--SDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--S-APTVFID-  351 (487)
T ss_dssp             ETTEEE--EEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--T-TTEEEEC-
T ss_pred             cCCccc--ceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--C-CCeEEEE-
Confidence            222221  12468999999999999999  777777       799999999999999 599999995  3 3467788 


Q ss_pred             CCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEE
Q 020059          276 KATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVI  328 (331)
Q Consensus       276 ~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i  328 (331)
                      +||||+|++++++.++    .+|+++|||++.++       |++++++.+.+ .+.+|
T Consensus       352 ~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dk-------d~~~~~~~l~~~~d~vi  402 (487)
T 2vos_A          352 AAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDK-------DVDGILAALEPVFDSVV  402 (487)
T ss_dssp             CCCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTB-------CHHHHHHHHTTTCSEEE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC-------CHHHHHHHHHhhCCEEE
Confidence            5999999999988763    36899999999887       68888888754 34444

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=100.00  E-value=1.1e-45  Score=352.08  Aligned_cols=281  Identities=16%  Similarity=0.140  Sum_probs=204.1

Q ss_pred             eeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhh------
Q 020059           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF------   87 (331)
Q Consensus        29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~------   87 (331)
                      +.++..+.+.+.   ++.++|+||||||||||++||+++|++.|+++++.++            .|.+++...+      
T Consensus        22 l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~  101 (428)
T 1jbw_A           22 HRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAF  101 (428)
T ss_dssp             CHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHH
Confidence            455555544431   3678999999999999999999999999999976665            2333321110      


Q ss_pred             -----hccc-----CCC--------------CCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhhhccC-CHHH
Q 020059           88 -----HCIA-----LPS--------------SKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN  141 (331)
Q Consensus        88 -----~~~~-----~~~--------------~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~  141 (331)
                           +.+.     .+.              .+.++|++|+|+|++ +++..+. ++|+++|||||+.||+++|| |+|+
T Consensus       102 ~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~  180 (428)
T 1jbw_A          102 VRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTITA  180 (428)
T ss_dssp             HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSCCHHHHCSSHHH
T ss_pred             HHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccccccc-CCCCEEEECcCcHhhhhhhCCCHHH
Confidence                 0000     000              145789999999986 5666554 69999999999999999999 9999


Q ss_pred             HHHHHHHhccccCCCceEEEeCCChhhHHHHhc----cCccEEEeccCCCccc-ccccccceEEEecCceeEEEEeecCC
Q 020059          142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKI-DTEAKTASFEVPAVGVVSQLQLHNMK  216 (331)
Q Consensus       142 ~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  216 (331)
                      |+++|+++++   +++.+|+|.||+....+...    ...++.+||.+..... ........|.+...+...  ..+.++
T Consensus       181 ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  255 (428)
T 1jbw_A          181 IAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRI--SDLEVP  255 (428)
T ss_dssp             HHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTEEEEEEEECSSSEEEEEEETTEEE--EEEEES
T ss_pred             HHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCccceeeccccccCCceEEEecCCccc--cccccC
Confidence            9999999997   57889999999987665432    2446777774211100 000112234433322222  134789


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc
Q 020059          217 VMGRHNYHNAAVAALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL  290 (331)
Q Consensus       217 l~G~~n~~NalaA~~~a~~~~l-g-----~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~  290 (331)
                      ++|.||++|+++|+  +++..+ |     ++.+.|+++|++|+ +|||||++.  .++..++||  +|||+|++++++.+
T Consensus       256 l~G~hn~~Na~aAi--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD~--AhNp~s~~a~l~~l  328 (428)
T 1jbw_A          256 LVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVIDG--AHNPDGINGLITAL  328 (428)
T ss_dssp             CCSTHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEEC--CCSHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHH--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEEC--CcCHHHHHHHHHHH
Confidence            99999999999999  788888 9     99999999999999 799999995  356566653  78999999998887


Q ss_pred             C---CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEEe
Q 020059          291 K---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT  329 (331)
Q Consensus       291 ~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i~  329 (331)
                      +   ++|+++|+|++.++       |+.++++.+.+ .+.+|+
T Consensus       329 ~~~~~~~~i~V~g~~~~k-------d~~~~~~~~~~~~d~vi~  364 (428)
T 1jbw_A          329 KQLFSQPITVIAGILADK-------DYAAMADRLTAAFSTVYL  364 (428)
T ss_dssp             HHHCSSCCEEEEECSSST-------THHHHHHHHHHHCSEEEE
T ss_pred             HHhcCCCEEEEEeeCCCC-------CHHHHHHHHhhhCCEEEE
Confidence            4   36889999999765       78888888854 455544

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=100.00  E-value=2.8e-44  Score=343.36  Aligned_cols=278  Identities=17%  Similarity=0.177  Sum_probs=196.5

Q ss_pred             eeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhhh-----
Q 020059           29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-----   88 (331)
Q Consensus        29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~-----   88 (331)
                      +.++..+.+.+.   ++.++|+||||||||||++||+++|++.|+++++.++            .|.|++...+.     
T Consensus        35 l~~~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~  114 (442)
T 1o5z_A           35 LERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYET  114 (442)
T ss_dssp             SHHHHHHHHHTTCGGGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHH
Confidence            445544444331   3678999999999999999999999999999976654            25444332110     


Q ss_pred             ------c--------ccCC----------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHH
Q 020059           89 ------C--------IALP----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNY  142 (331)
Q Consensus        89 ------~--------~~~~----------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~  142 (331)
                            .        .+..          +.+.++|++|+|+|. ++++.++. ++|+++|||||+.||+|+|| |+|+|
T Consensus       115 ~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~i  193 (442)
T 1o5z_A          115 MEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQI  193 (442)
T ss_dssp             HHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHH
T ss_pred             HHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHH
Confidence                  0        0000          013568999999994 56676554 79999999999999999999 99999


Q ss_pred             HHHHHHhccccCCCceEEEeCCChhhHHHHhc----cCccEEEeccCCCccccc---ccccceEEEecCceeEEEEeecC
Q 020059          143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNM  215 (331)
Q Consensus       143 ~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l  215 (331)
                      +++|+++++   +++.+|+|.||+....+...    ...++.+|+.+  +....   ......|.+...+ .+  ..+.+
T Consensus       194 a~~K~~i~~---~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l  265 (442)
T 1o5z_A          194 AWEKSGIIK---ERVPLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGEN-TF--EDLVL  265 (442)
T ss_dssp             HHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESSS-EE--EEEEE
T ss_pred             HHHHHhhcc---CCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEeccc-cc--ccccc
Confidence            999999997   57889999999987665432    24467777742  21110   0012233333221 11  13478


Q ss_pred             CCCcHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--
Q 020059          216 KVMGRHNYHNAAVAALSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--  291 (331)
Q Consensus       216 ~l~G~~n~~NalaA~~~a~~~--~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--  291 (331)
                      +++|.||++|+++|+  +++.  .+|++.+.|+++|++|+ +|||||++.  .++..+|+| +||||+|++++++.++  
T Consensus       266 ~l~G~hn~~NalaAi--a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD-~AhNp~s~~~~l~~l~~~  339 (442)
T 1o5z_A          266 TMNGPHQIENAGVAL--KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILD-GAHNPHGAESLVRSLKLY  339 (442)
T ss_dssp             SSCSTHHHHHHHHHH--HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEEC-CCCSHHHHHHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHHH--HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEE-CCcCHHHHHHHHHHHHHh
Confidence            999999999999999  8888  89999999999999999 699999995  332456666 5999999999988874  


Q ss_pred             --CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEE
Q 020059          292 --GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVI  328 (331)
Q Consensus       292 --~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i  328 (331)
                        .+|+++|+|++.++       |+.++++.+.+ .+.++
T Consensus       340 ~~~~~~i~V~g~~~dk-------d~~~~~~~l~~~~d~vi  372 (442)
T 1o5z_A          340 FNGEPLSLVIGILDDK-------NREDILRKYTGIFERVI  372 (442)
T ss_dssp             CTTCCEEEEECCCTTS-------CHHHHHGGGTTTCSEEE
T ss_pred             CCCCCEEEEEecCCCC-------CHHHHHHHHHhhCCEEE
Confidence              36899999998766       78888888855 45443

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=100.00  E-value=1.1e-44  Score=345.60  Aligned_cols=278  Identities=18%  Similarity=0.150  Sum_probs=198.5

Q ss_pred             eeeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhhc---
Q 020059           28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC---   89 (331)
Q Consensus        28 ~l~~~~~~~~~~---~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~---   89 (331)
                      -|.|+..+.+.+   .++.++||||||||||||++||+++|++.|+++++.++.            |.+++...+..   
T Consensus        34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~  113 (437)
T 3nrs_A           34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA  113 (437)
T ss_dssp             CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence            366777776655   246789999999999999999999999999999765552            22222111000   


Q ss_pred             ----c--cCC--------------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 020059           90 ----I--ALP--------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC  147 (331)
Q Consensus        90 ----~--~~~--------------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~  147 (331)
                          .  ..+              +.+.++|++|+|+|+ |+++.++. ++|+++|||||+.||+++|| |+|+|+++|+
T Consensus       114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka  192 (437)
T 3nrs_A          114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA  192 (437)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence                0  000              114678999999995 56777654 78999999999999999999 9999999999


Q ss_pred             HhccccCCCceEEEeCCChh--hHHHHhccCccEEEeccCCCcccc--------cccccceEEEecCceeEEEEeecCCC
Q 020059          148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV  217 (331)
Q Consensus       148 ~i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l  217 (331)
                      +|++   +++.+|+|.||+.  +...+.....++.++|.+.++...        .+.....+.+...+.  .  ...+++
T Consensus       193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l  265 (437)
T 3nrs_A          193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV  265 (437)
T ss_dssp             GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred             hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence            9997   5788999988864  334444455677777754221111        000112233332221  1  123455


Q ss_pred             C--cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----
Q 020059          218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----  291 (331)
Q Consensus       218 ~--G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----  291 (331)
                      +  |.||+.|+++|+  ++ ..+|++.+.|+++|++|+ .|||||++.  .++ .+|+|+ ||||+|++++++.++    
T Consensus       266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D~-AHNp~a~~all~~l~~~~~  337 (437)
T 3nrs_A          266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQP-LLILDV-AHNPHAARYLVNRLAQVIN  337 (437)
T ss_dssp             CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEECC-CCSHHHHHHHHHHHHHTC-
T ss_pred             cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cCC-eEEEEC-CCCHHHHHHHHHHHHhhcc
Confidence            4  899999999887  55 568999999999999999 599999995  344 678885 999999999877664    


Q ss_pred             ------CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEE
Q 020059          292 ------GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVI  328 (331)
Q Consensus       292 ------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i  328 (331)
                            .+|+++|+|++.++       |++++++.+.+ .+.++
T Consensus       338 ~~~~~~~~r~i~V~G~~~dk-------d~~~~~~~l~~~~~~v~  374 (437)
T 3nrs_A          338 PVNASKQGKVRAVVGMLSDK-------DIAGTLACLSERVDEWY  374 (437)
T ss_dssp             -------CCEEEEECCBTTB-------CHHHHHHHHTTTCCEEE
T ss_pred             hhhhcCCCCEEEEEeCCCCC-------CHHHHHHHHHhcCCEEE
Confidence                  46899999988776       79999998864 34443

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=100.00  E-value=2.7e-43  Score=335.23  Aligned_cols=262  Identities=18%  Similarity=0.136  Sum_probs=188.3

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhh-------c-c-cCC------
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH-------C-I-ALP------   93 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~-------~-~-~~~------   93 (331)
                      ++.++|+||||||||||++||+++|++.|+++++.++.            |.+++...+.       . . ..+      
T Consensus        47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~  126 (422)
T 1w78_A           47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY  126 (422)
T ss_dssp             CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred             cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence            56799999999999999999999999999998654442            1121111000       0 0 000      


Q ss_pred             --------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhccccCCCceEEEeC
Q 020059           94 --------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF  163 (331)
Q Consensus        94 --------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n~  163 (331)
                              +.+.++|++|+|+|. ++++..+ .++|+++|||||+.||+|+|| |+|+|+++|+++++   +++.+|+|.
T Consensus       127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~-~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~  202 (422)
T 1w78_A          127 GTLSALWLFKQAQLDVVILEVGLGGRLDATN-IVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE  202 (422)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSSSSTTSGGG-GSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCccccccc-CCCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence                    013468999999995 5666554 479999999999999999999 99999999999997   577889998


Q ss_pred             CChhh--HHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc--C
Q 020059          164 GNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G  239 (331)
Q Consensus       164 dd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l--g  239 (331)
                      ||+..  .........++.+||.+  +.+..+  ...+.+...+...    ..++++ .||++|+++|+  +++..+  |
T Consensus       203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g  271 (422)
T 1w78_A          203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE  271 (422)
T ss_dssp             SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred             ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence            87642  22222234467777742  211111  1123332222211    357888 99999999999  777765  8


Q ss_pred             CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChh
Q 020059          240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFE  315 (331)
Q Consensus       240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~  315 (331)
                      ++.+.|+++|++|+ +|||||++.  .++ .+|+|+ ||||+|++++++.++    ++|+++|+|++.++       |++
T Consensus       272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D~-Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k-------d~~  339 (422)
T 1w78_A          272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFDV-AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK-------DIA  339 (422)
T ss_dssp             CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEEC-CCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS-------CHH
T ss_pred             CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC-------CHH
Confidence            99999999999999 599999995  344 566674 999999999977653    46899999998776       789


Q ss_pred             hhhhhhcc-eeEEEe
Q 020059          316 KLIEPLNH-HRCVIT  329 (331)
Q Consensus       316 ~l~~~l~~-~~~~i~  329 (331)
                      ++++.+.+ .+.+++
T Consensus       340 ~~~~~l~~~~d~vi~  354 (422)
T 1w78_A          340 GTLAWLKSVVDDWYC  354 (422)
T ss_dssp             HHHHHHHTTCSEEEE
T ss_pred             HHHHHHHhhCCEEEE
Confidence            99988854 444443

>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}

Probab=99.14  E-value=6.3e-11  Score=97.27  Aligned_cols=83  Identities=14%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             HHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCC-hhh
Q 020059          242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNG-FEK  316 (331)
Q Consensus       242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~-~~~  316 (331)
                      .++|+++|++|++++||||++. ..++++|||| |||||++++++++.++    .+|+++|||......   ...+ +.+
T Consensus        11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~---r~k~~~~~   85 (163)
T 3mvn_A           11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTM---KMGVHKHE   85 (163)
T ss_dssp             ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC------------CHH
T ss_pred             HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcch---hhHHHHHH
Confidence            4678999999999999999996 4678999999 6999999999887763    468888887542210   0112 356


Q ss_pred             hhhhhcceeEEEe
Q 020059          317 LIEPLNHHRCVIT  329 (331)
Q Consensus       317 l~~~l~~~~~~i~  329 (331)
                      +...+...+.+|+
T Consensus        86 ~~~~~~~aD~vi~   98 (163)
T 3mvn_A           86 LATSLQDADSVFI   98 (163)
T ss_dssp             HHHHHTTCSEEEE
T ss_pred             HHHHHhcCCEEEE
Confidence            6666665665554

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.22  E-value=0.0012  Score=62.69  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=52.0

Q ss_pred             eeeeeccccc-cCChHHHHHHHcCCee--eeHHHHHHhhCC---CCCc-EEEEeCCCChHhH-HHHHHHHHHhc
Q 020059            3 MLWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP---RSIK-ILAVTGTNGKSTV-VTFVGQMLNHL   68 (331)
Q Consensus         3 ~~~~~~~~~~-~~~p~~~~a~~~g~~~--l~~~~~~~~~~~---~~~~-~I~VtGT~GKTTt-~~~l~~iL~~~   68 (331)
                      +|||.++..+ .+++..+.|+++|+++  .+++++....++   .+.+ +|+|| |||||++ +.+|..-|++.
T Consensus        74 ~lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~  146 (457)
T 1pjq_A           74 WLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL  146 (457)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence            5788888887 4778888999999998  788877665543   2344 99999 9999998 89999888865

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.43  E-value=0.04  Score=49.40  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             CCCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      .+.|+|+|+  |--|||||+.-|+..|.+.|+++.+.
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI   82 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI   82 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence            477899999  56789999999999999999999753

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=93.44  E-value=0.082  Score=45.73  Aligned_cols=40  Identities=30%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             HhhCCCCCcEEEEeCCC---ChHhHHHHHHHHHHhcCCCeeec
Q 020059           36 AQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        36 ~~~~~~~~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      .++..++++.|.||||.   |||+++.-|...|++.|+++..+
T Consensus        19 ~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f   61 (251)
T 3fgn_A           19 NLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC   61 (251)
T ss_dssp             ---CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            34444577899999987   99999999999999999998653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.94  E-value=0.1  Score=42.86  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=28.3

Q ss_pred             CcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        43 ~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +++|+|+   |-.||||++..|+..|...|+++.+.
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli   36 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV   36 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            4688898   56789999999999999999998653

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=92.87  E-value=0.13  Score=41.64  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=29.4

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      ++++|+|+|..  ||||+...|...|+..|++++..-
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            56899999975  999999999999999999885543

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=92.83  E-value=0.11  Score=44.11  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=30.6

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      .+++.|.||||   .|||+++.-|.+.|++.|+++..+
T Consensus         2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~   39 (228)
T 3of5_A            2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL   39 (228)
T ss_dssp             TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence            36788999998   599999999999999999998643

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=92.00  E-value=0.14  Score=42.93  Aligned_cols=31  Identities=29%  Similarity=0.187  Sum_probs=27.2

Q ss_pred             cEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|.|+++   .||||++.-|+..|.+.|+++.+
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll   35 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            57888865   68999999999999999999865

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=91.39  E-value=0.49  Score=41.80  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=30.3

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ...++|.||++   .||||++.-|+..|.+.|+++.+.
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI  139 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI  139 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            46689999976   589999999999999999998654

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=91.26  E-value=0.31  Score=42.88  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      .+.++|.||++   -||||++.-|+..|.+.|+++.+.
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI  127 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI  127 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            46789999865   589999999999999999998654

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=90.87  E-value=0.23  Score=42.03  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CCCcEEEEe---CCCChHhHHHHHHHHHHhc-CCCeee
Q 020059           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHL-GIEAFV   74 (331)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~~-g~~~~~   74 (331)
                      +..++|+|+   |-.||||++..|+..|... |+++.+
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vll   39 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLA   39 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEE
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEE
Confidence            356889998   5678999999999999998 999864

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=90.85  E-value=0.4  Score=41.73  Aligned_cols=35  Identities=17%  Similarity=0.351  Sum_probs=30.2

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +..++|.||++   -||||++.-|+..|.+.|+++.+.
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI  117 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV  117 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            46789999965   699999999999999999998653

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=90.60  E-value=0.22  Score=42.78  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++.++|+|+++   .||||++..|+..|...|+++.+.
T Consensus         4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   41 (257)
T 1wcv_1            4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV   41 (257)
T ss_dssp             -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence            35689999855   479999999999999999998653

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=90.56  E-value=0.46  Score=40.91  Aligned_cols=42  Identities=19%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             HHHHhhCCCCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           33 DFAAQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        33 ~~~~~~~~~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +...++. +..++|+|+++   .||||++.-|+..|...|+++.+.
T Consensus         9 ~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli   53 (262)
T 2ph1_A            9 EIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL   53 (262)
T ss_dssp             HHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            3344444 45679999855   579999999999999999998653

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=90.54  E-value=0.28  Score=41.29  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             cEEEEeC---CCChHhHHHHHHHHHHhcCCCeeec
Q 020059           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        44 ~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++|+|++   -.||||++..|+..|.+.|+++.+.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            6788875   4589999999999999999998653

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=90.26  E-value=0.3  Score=41.88  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=30.5

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +..+.|.||||   .|||+++..|.+.|++.|++++.+
T Consensus        19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f   56 (242)
T 3qxc_A           19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL   56 (242)
T ss_dssp             CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence            35689999999   699999999999999999998644

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=89.96  E-value=0.057  Score=47.34  Aligned_cols=65  Identities=14%  Similarity=0.130  Sum_probs=44.7

Q ss_pred             ceeeeeccccc-cCChHHHHHHHc---CCee--eeHHHHHHhhCC---CCCc--EEEEeCCCChHhHH-HHHHHHHHh
Q 020059            2 WMLWLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP---RSIK--ILAVTGTNGKSTVV-TFVGQMLNH   67 (331)
Q Consensus         2 ~~~~~~~~~~~-~~~p~~~~a~~~---g~~~--l~~~~~~~~~~~---~~~~--~I~VtGT~GKTTt~-~~l~~iL~~   67 (331)
                      +++||.++..+ .+++..+.|+++   ++++  ...++.....+|   .+.+  +|+|| |||||++. ..|..-+.+
T Consensus       107 adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~  183 (274)
T 1kyq_A          107 WYIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN  183 (274)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence            46777777765 455677788998   9888  777776654443   2334  99999 99998654 555555544

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=89.32  E-value=0.4  Score=40.92  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=26.7

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+   |-.||||++..|+..|...|+++.+
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll   36 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV   36 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence            678887   5568999999999999999999864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=89.28  E-value=0.42  Score=42.78  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +..+|+|+|.+  |||||+..|+..|...|.++.+.+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid  140 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA  140 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            45799999775  799999999999999898886544

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=89.26  E-value=0.38  Score=41.37  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=25.8

Q ss_pred             cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|.  |-.||||++..|+..|...|+++.+
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vll   34 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV   34 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence            455554  6679999999999999999999864

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=89.16  E-value=0.42  Score=41.72  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=26.7

Q ss_pred             CcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        43 ~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +++|+|+  |-.||||++.-|+..|...|+++.+
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVll   35 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI   35 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence            4566665  6689999999999999999999854

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=88.86  E-value=0.42  Score=41.77  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+   |-.||||++..|+..|...|+++.+
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll   38 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV   38 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            589998   5678999999999999999999864

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=88.80  E-value=0.38  Score=41.44  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=27.7

Q ss_pred             CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059           41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++.++|+|++.   .||||++..|+..|. .|+++.+
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vll   60 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLL   60 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEE
Confidence            46789999755   579999999999999 9999854

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=88.49  E-value=0.52  Score=41.89  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      ...+|+|+|.+  |||||+..|+..+...|.++.+.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~  139 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA  139 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence            45689999876  799999999999998888876544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=87.58  E-value=0.9  Score=37.29  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=27.8

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeee
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .+..+|+|+|.+  ||||++.+|...|...|..+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~   55 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV   55 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence            456799999987  8999999999999877665533

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=87.34  E-value=0.64  Score=39.78  Aligned_cols=31  Identities=29%  Similarity=0.572  Sum_probs=26.3

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      ++|+|+   |-.||||++..|+..|...|+++.+
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll   36 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTI   36 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence            577776   4568999999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=86.73  E-value=0.66  Score=38.48  Aligned_cols=29  Identities=31%  Similarity=0.519  Sum_probs=24.9

Q ss_pred             EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|+|+   |-.||||++..|+..|...| ++.+
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll   33 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL   33 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE
Confidence            56666   67799999999999999999 8854

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=86.59  E-value=0.65  Score=42.36  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=30.1

Q ss_pred             CCCcEEEEeC---CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        41 ~~~~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      ++.++|+|++   -.||||++.-|+..|...|+++.+..
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD  179 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN  179 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence            4678999985   55899999999999999999986543

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=86.29  E-value=0.33  Score=42.58  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=23.0

Q ss_pred             eCCCChHhHHHHHHHHHHhcCCCeee
Q 020059           49 TGTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        49 tGT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      -|-.||||++..|+..|...|+++.+
T Consensus        45 KGGvGKTT~a~nLA~~la~~G~rVll   70 (298)
T 2oze_A           45 KGGVGKSKLSTMFAYLTDKLNLKVLM   70 (298)
T ss_dssp             SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence            35689999999999999999999864

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=85.46  E-value=0.45  Score=43.30  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=27.3

Q ss_pred             CcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        43 ~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +++|+|+   |-.||||++.-|+..|...|+++.+
T Consensus         1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLl   35 (361)
T 3pg5_A            1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLY   35 (361)
T ss_dssp             CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence            4678887   5568999999999999999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=84.84  E-value=0.97  Score=39.86  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=27.5

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHh-cCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~-~g~~~~~~g   76 (331)
                      +..+|+++|.|  |||||+..|+..+.. .|+++.+.+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~  141 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT  141 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45577777654  899999999999985 898876544

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=84.73  E-value=1.1  Score=40.60  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=30.6

Q ss_pred             CCCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      +..++|.|+   |-.||||++.-++..|...|+++.+...
T Consensus        23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   62 (349)
T 3ug7_A           23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST   62 (349)
T ss_dssp             SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred             cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            466778887   6678999999999999999999866543

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=84.69  E-value=0.94  Score=40.93  Aligned_cols=108  Identities=11%  Similarity=0.016  Sum_probs=61.5

Q ss_pred             CCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeeccc---------Ccccchhhhhhcc------cCCCCCCCCcEEE
Q 020059           42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN---------LGNPLSEAAFHCI------ALPSSKPKFQVAV  103 (331)
Q Consensus        42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~g~---------~g~~~~~~~~~~~------~~~~~~~~~~~~V  103 (331)
                      +.+.|.|+||   -|||+|+..|.+.|++.|++++..++         .|.|......+..      ......+++|+.+
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~~~~~~~d~vl  230 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILH  230 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHHHhccCCCEEE
Confidence            3678999998   49999999999999999999865332         2233321111100      0001134678899


Q ss_pred             EEeccc---cccccC--c--eeccc-EEEEecCChhhhhcc-----CCHHHHHHHHHHh
Q 020059          104 VEVSSY---QMEIPN--K--YFCPT-VSVVLNLTPDHLERH-----KTMKNYALTKCHL  149 (331)
Q Consensus       104 lE~~~~---~~~~~~--~--~~~p~-i~viTni~~dHl~~~-----gt~e~~~~~K~~i  149 (331)
                      +|-..+   ......  .  -.+|+ +.+....+.-|++.|     .++++....-..+
T Consensus       231 VEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l  289 (349)
T 2obn_A          231 IEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV  289 (349)
T ss_dssp             ECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred             EeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence            996532   221000  0  13666 566666666666333     2555555544443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=84.16  E-value=1.5  Score=36.19  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=26.5

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA   72 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~   72 (331)
                      ++..+|+|.|-|  ||||+..+|..++...|..+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~   53 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA   53 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence            466799999987  89999999999998655444

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=83.81  E-value=1.5  Score=35.44  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .+++++|+|.  .||||+...|...|...|++++.
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~   39 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGL   39 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeE
Confidence            3679999998  48999999999989888888754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=83.67  E-value=1.1  Score=41.83  Aligned_cols=35  Identities=17%  Similarity=0.184  Sum_probs=29.2

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +..+|.++|.+  |||||+..|+..|+..|.++.+.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~  132 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA  132 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            35689999865  599999999999999999986533

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=83.11  E-value=0.95  Score=39.76  Aligned_cols=30  Identities=33%  Similarity=0.524  Sum_probs=24.0

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCC
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIE   71 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~   71 (331)
                      +..+|+|||..  ||||++.+|...|...|.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~   35 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVK   35 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            45799999985  8999999999998765543

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=83.04  E-value=1.2  Score=40.26  Aligned_cols=107  Identities=21%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             CCcEEEEeCCC---ChHhHHHHHHHHHHhcCCCeeeccc----------Ccccchhhhhh-------cccCCCCCCCCcE
Q 020059           42 SIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVGGN----------LGNPLSEAAFH-------CIALPSSKPKFQV  101 (331)
Q Consensus        42 ~~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~~g~----------~g~~~~~~~~~-------~~~~~~~~~~~~~  101 (331)
                      +.+.|.|+||.   |||+|+..|.+.|++.|++++..++          .|.++.....+       .........+.|+
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~  247 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI  247 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence            46789999985   9999999999999999999865332          22222211111       0000000346788


Q ss_pred             EEEEeccccccc---c----Cc--eecccEEEEec-CChhhhhcc------CCHHHHHHHHHHh
Q 020059          102 AVVEVSSYQMEI---P----NK--YFCPTVSVVLN-LTPDHLERH------KTMKNYALTKCHL  149 (331)
Q Consensus       102 ~VlE~~~~~~~~---~----~~--~~~p~i~viTn-i~~dHl~~~------gt~e~~~~~K~~i  149 (331)
                      .++|-. +++-.   .    ..  -.+|+..|+.. -++.|++.|      +++++..+.-..+
T Consensus       248 ivVEGq-Ggl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l  310 (350)
T 2g0t_A          248 VFVEGQ-GALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETL  310 (350)
T ss_dssp             EEEECC-SCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHS
T ss_pred             EEEccC-eeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHh
Confidence            999977 32210   0    01  14788888865 555555444      5666655544433

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=82.64  E-value=1.5  Score=38.72  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +..++++.|-|  ||||+...|+..++..+.++.+.|
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g  135 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  135 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45688888877  899999999999998777775554

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=82.35  E-value=1.3  Score=39.45  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      ++|.|+   |-.||||++.-++..|.+.|+++.+...
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~   50 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST   50 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            677777   7788999999999999999999865443

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=82.26  E-value=0.82  Score=42.09  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             CCCcEEEEe---CCCChHhHHHHHHHHHH------hcCCCeee
Q 020059           41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~------~~g~~~~~   74 (331)
                      .+.++|+|+   |-.||||++..|+..|.      ..|+++.+
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVll  151 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILV  151 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEE
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence            467899999   66799999999999998      56777643

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=82.00  E-value=1.4  Score=40.30  Aligned_cols=34  Identities=9%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             CCCcEEEEe---CCCChHhHHHHHHHHHHh------cCCCeee
Q 020059           41 RSIKILAVT---GTNGKSTVVTFVGQMLNH------LGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~------~g~~~~~   74 (331)
                      ...++|+|+   |-.||||++..|++.|..      .|+++.+
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVll  148 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILV  148 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEE
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence            357899999   667899999999999984      5777744

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=81.44  E-value=1.4  Score=39.48  Aligned_cols=33  Identities=12%  Similarity=0.102  Sum_probs=27.0

Q ss_pred             cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +.|.|+   |-.||||++..|+..|.+.|+++.+..
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD   54 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS   54 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            445555   678999999999999999999986543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=80.90  E-value=1.4  Score=35.50  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=26.7

Q ss_pred             CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeee
Q 020059           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +++++|+|.+  ||||+..+|...+...|++++.
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~   35 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAV   35 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEE
Confidence            3689999975  7999999999999998887743

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=80.58  E-value=2  Score=34.28  Aligned_cols=31  Identities=29%  Similarity=0.277  Sum_probs=25.6

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA   72 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~   72 (331)
                      +..+|+++|.+  ||||++.+|+..|...|+.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~   36 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC   36 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence            45688899875  89999999999998777654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=80.34  E-value=2  Score=38.44  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=28.8

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      +..+|++.|-|  |||||...|+..++..+.++.+.|
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g  164 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA  164 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45688888876  699999999999999887776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1p3da3	215	c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine	5e-17
d1gg4a4	214	c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl	9e-16
d2jfga3	204	c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine	1e-13
d1e8ca3	234	c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid	7e-13
d1j6ua3	207	c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l	8e-11
d2jfga2	140	c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanin	7e-09
d2gc6a2	296	c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {	1e-04
d1o5za2	296	c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase	3e-04

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

 Score = 76.4 bits (187), Expect = 5e-17
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 15/213 (7%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           R    +AV GT+GK+T    +  +     ++                      +     +
Sbjct: 10  RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNG-------GLVKSAGKNAHLGASR 62

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG 159
             + E         +    P VSVV N+ PDH++ ++   +    T      ++    L 
Sbjct: 63  YLIAEADESDASFLH--LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 120

Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH---NMK 216
           ++   +  L E +      +   G         E    +       V+          + 
Sbjct: 121 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLN 180

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           V G+HN  N  AA+A     G+     +EAL  
Sbjct: 181 VPGKHNALNATAALAVAKEEGIANEAILEALAD 213

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

 Score = 72.8 bits (177), Expect = 9e-16
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 13/213 (6%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
           +++A+TG++GK++V      +L+  G   +  GNL N +          P          
Sbjct: 3   RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG 62

Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
                           P  ++V NL   HLE   ++   A  K  +FS +    + ++  
Sbjct: 63  ANHQGEIA-WTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNA 121

Query: 164 GNQHLNE---AIKGHRFNLAWIGA----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
            N         I   +       A    F    I   +    F +        + L    
Sbjct: 122 DNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLL---P 178

Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           + GRHN  N  AA A    +G  +      L +
Sbjct: 179 LPGRHNIANALAAAALSMSVGATLDAIKAGLAN 211

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 66.7 bits (161), Expect = 1e-13
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 31  ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
           +++   +       I+A+TG+NGKSTV T VG+M    G+   VGGN             
Sbjct: 1   DIELFCREAQ--APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN---------IGLP 49

Query: 91  ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
           AL     + ++ V+E+SS+Q+E  +       +++             ++ Y   K  ++
Sbjct: 50  ALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 109

Query: 151 SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
            +        +   +  L   I+G        G   G       +  ++       V   
Sbjct: 110 ENAKVC----VVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVL-- 163

Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
            +  MK+ G+HNY N  AA+A     GL     ++AL +
Sbjct: 164 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTT 202

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (157), Expect = 7e-13
 Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 22/229 (9%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA------------AFH 88
            +++++ VTGTNGK+T    + Q    LG  + V G +GN L                  
Sbjct: 3   DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQ 62

Query: 89  CIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
                          +EVSS+ + +          SV  NL+ DHL+ H  M++Y   K 
Sbjct: 63  HELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKW 122

Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
            L+S     +  +            K        +              A+         
Sbjct: 123 LLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGA 182

Query: 208 SQLQLHN-------MKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
           +     +         +MG  N  N   A+A L  LG  +   ++    
Sbjct: 183 TIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAAR 231

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.6 bits (140), Expect = 8e-11
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 21/208 (10%)

Query: 44  KILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
           +  AVTGT+GK+T    V  +L HL      F+GG + +                     
Sbjct: 15  EEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGN----------- 63

Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
             V     + E     F P   ++ N   DHLE +        +     S   +  +   
Sbjct: 64  GPVVYELDESEEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFA 123

Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
                     +        +           +             +       +KV G H
Sbjct: 124 EDELTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLEL------KLKVPGFH 177

Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNS 247
           N  N  A +A    LG D+   +EAL  
Sbjct: 178 NVLNALAVIALFDSLGYDLAPVLEALEE 205

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 51.5 bits (122), Expect = 7e-09
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
           PHR ++V  +  GV W++DSKATN+ +T   L  L     + LL G   
Sbjct: 3   PHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDG 50

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 17/137 (12%), Positives = 38/137 (27%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
           +  + + VTGTNGK +    +  +L   G+   +                  P       
Sbjct: 37  QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96

Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
            AV  V +    +  +     V+    +T       +  +              ++   +
Sbjct: 97  NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156

Query: 161 LPFGNQHLNEAIKGHRF 177
            P  +     A+   + 
Sbjct: 157 TPVVSVLTEVALDHQKL 173

>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 30/251 (11%), Positives = 62/251 (24%), Gaps = 41/251 (16%)

Query: 41  RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-------LSEAAFHCIALP 93
              K + + GTNGK +V   V  +L   G       +           L+E       + 
Sbjct: 41  LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVV 100

Query: 94  SSKPKFQVAVVEVSSYQMEIPNKYFCPTV---------SVVLNLTPDHLERHKTMKNYAL 144
                 +  + E+   ++  P+ +   T          +V + +    L       N   
Sbjct: 101 KIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVF 160

Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGVKIDTEAKTASFEV 201
             C     +       L +  + +     G       L             E        
Sbjct: 161 PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSS 220

Query: 202 PAVGVVSQLQLHNMKVM----------------------GRHNYHNAAVAALSVLGLDIG 239
               +     +    +                       G H   NA VA  ++    + 
Sbjct: 221 RMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLP 280

Query: 240 VDVEALNSTIE 250
           +  +A+   ++
Sbjct: 281 LSEKAIREGLK 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	100.0
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	100.0
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	100.0
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	100.0
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	100.0
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	100.0
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	99.98
d1gg4a1	135	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	99.36
d2jfga2	140	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	99.11
d1e8ca2	160	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	98.85
d1o5za1	137	Folylpolyglutamate synthetase, C-terminal domain {	98.59
d2gc6a1	129	Folylpolyglutamate synthetase, C-terminal domain {	98.58
d1j6ua2	151	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.58
d1p3da2	152	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.92
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.68
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.84
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.16
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.11
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.88
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	93.09
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	92.91
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.46
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.44
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.03
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.81
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.18
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.79
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	88.24
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	87.6
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	87.41
d1ls1a2	207	GTPase domain of the signal sequence recognition p	85.27
d1okkd2	207	GTPase domain of the signal recognition particle r	84.47
d1vmaa2	213	GTPase domain of the signal recognition particle r	83.86
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	82.28
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	82.07
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	81.71
d2qy9a2	211	GTPase domain of the signal recognition particle r	80.88
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	80.24
d1j8yf2	211	GTPase domain of the signal sequence recognition p	80.1

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=4.1e-39  Score=277.05  Aligned_cols=207  Identities=18%  Similarity=0.204  Sum_probs=158.3

Q ss_pred             HHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeec-ccCcccchhhhhhcccCCCCCCCCcEEEEEeccc
Q 020059           31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG-GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY  109 (331)
Q Consensus        31 ~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~  109 (331)
                      |.+.+++++ +..++|+||||||||||+.||+++|++.|+++... |++..++....        .....+++|+|++++
T Consensus         1 r~e~L~~~~-r~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~v~E~~~~   71 (215)
T d1p3da3           1 RAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA--------HLGASRYLIAEADES   71 (215)
T ss_dssp             HHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEE--------ECCSSSEEEEECCCT
T ss_pred             CHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCcccc--------ccCCCceEEEEcCCc
Confidence            445666665 46689999999999999999999999999987543 33333322111        123457899999988


Q ss_pred             cccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCCc
Q 020059          110 QMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV  188 (331)
Q Consensus       110 ~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~  188 (331)
                      +....  .++||++|||||++||+|+| +++|+|+++|.++++.+++++.+|+|.||+....+......++++||.....
T Consensus        72 ~~~~~--~~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~  149 (215)
T d1p3da3          72 DASFL--HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQA  149 (215)
T ss_dssp             TSGGG--GCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTC
T ss_pred             cccce--eEcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEEEeCcchHHHHHHHhcCCceEEEcccccc
Confidence            76543  27999999999999999988 6999999999999999999999999999999999887777788999876432


Q ss_pred             ccc-----cccccce-EEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 020059          189 KID-----TEAKTAS-FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (331)
Q Consensus       189 ~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~  253 (331)
                      ...     ....... +..........   +.++++|+||++|+++|+  ++|..+|+++++|+++|++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Fk  215 (215)
T d1p3da3         150 DYRIEDYEQTGFQGHYTVICPNNERIN---VLLNVPGKHNALNATAAL--AVAKEEGIANEAILEALADFQ  215 (215)
T ss_dssp             SEEEEEEEEETTEEEEEEECTTCCEEE---EEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCC
T ss_pred             cccccccccccccccccccccccceee---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            211     0111111 11222222222   368999999999999999  899999999999999999986

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.5e-38  Score=268.29  Aligned_cols=202  Identities=26%  Similarity=0.406  Sum_probs=158.5

Q ss_pred             HHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEecccc
Q 020059           31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ  110 (331)
Q Consensus        31 ~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~  110 (331)
                      +++++.+..  +.|+|+||||||||||++||+++|+..|+++++.|++|.|.....         ..+.+++|+|+++++
T Consensus         1 ~~~lf~~~~--~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~V~E~~~~~   69 (204)
T d2jfga3           1 DIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLL---------DDECELYVLELSSFQ   69 (204)
T ss_dssp             HHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEETTSSCGGGGC---------CTTCCEEEEECCHHH
T ss_pred             CHHHHhhcC--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCcccccccccc---------cccceEEEEeecccc
Confidence            467788776  689999999999999999999999999999999999999876542         356789999999876


Q ss_pred             ccccCceecccEEEEecCChhhhhccCC-HHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCC-c
Q 020059          111 MEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-V  188 (331)
Q Consensus       111 ~~~~~~~~~p~i~viTni~~dHl~~~gt-~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~-~  188 (331)
                      ..... .++|+++|||||++||+|+|++ ++.+.+.|..+++   +.+.+|+|.||+....+. ....+.++||.... +
T Consensus        70 ~~~~~-~~~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~---~~~~~v~n~dd~~~~~~~-~~~~~~i~~~~~~~~~  144 (204)
T d2jfga3          70 LETTS-SLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE---NAKVCVVNADDALTMPIR-GADERCVSFGVNMGDY  144 (204)
T ss_dssp             HHTCC-CCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGT---TCSEEEEETTCGGGSCTT-CCCTTEEEECSSSSSE
T ss_pred             ccccc-ccccccceeeeeccccccccccHHHHHHHHHHhhhc---cccceeehhhhHHHHHHH-ccCCceEEeeccccch
Confidence            55443 3799999999999999999995 8999999999987   467899999999876543 34567788886532 1


Q ss_pred             ccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 020059          189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (331)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~  253 (331)
                      ......  ........+. ..+...+++++|+||++|+++|+  ++|..+|++.++|+++|++|.
T Consensus       145 ~~~~~~--~~~~~~~~~~-~~~~~~~~~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Ft  204 (204)
T d2jfga3         145 HLNHQQ--GETWLRVKGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAGLPRASSLKALTTFT  204 (204)
T ss_dssp             EEEEET--TEEEEEETTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             hhcccc--cccceeecCC-ccccccccCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            111111  1111111121 12223468999999999999999  899999999999999999984

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.9e-38  Score=271.57  Aligned_cols=208  Identities=22%  Similarity=0.188  Sum_probs=154.1

Q ss_pred             CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcc-cCC-----------CCCCCCcEEEEEecc
Q 020059           41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSS  108 (331)
Q Consensus        41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~VlE~~~  108 (331)
                      +++++|+||||||||||++||+++|+..|+++++.|++|.+......... +++           ....+++++++|+++
T Consensus         3 ~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g~~~~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~~le~ss   82 (234)
T d1e8ca3           3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS   82 (234)
T ss_dssp             GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             cCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECccccCcCccccccccccccchhHHHHHHHHhhcCCceeeeccCc
Confidence            46799999999999999999999999999999999988876543322110 111           013467899999998


Q ss_pred             ccccc-cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccC-C
Q 020059          109 YQMEI-PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-P  186 (331)
Q Consensus       109 ~~~~~-~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~-~  186 (331)
                      ++... ....++|+++|||||++||+|+||++|+|+++|.++++. ++.+.+|+|.|||....+.............. .
T Consensus        83 ~g~~~~~~~~~~p~i~vitNi~~dHld~~~~~e~~~~~K~~i~~~-~~~~~~iin~Dd~~~~~~~~~~~~~~~~~~~~~~  161 (234)
T d1e8ca3          83 HGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI  161 (234)
T ss_dssp             HHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCC
T ss_pred             cchhhhhhcccccceEEEeeccccchhhhccccceehhhhccccc-cccceeEEecccccchhhhhhhccceeeeecccc
Confidence            65432 233479999999999999999999999999999999986 35678899999999998877654443322211 1


Q ss_pred             Ccccc----------cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 020059          187 GVKID----------TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT  254 (331)
Q Consensus       187 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~  254 (331)
                      .....          .......+.+...+....   +.++++|.||++|+++|+  ++|..+|+++++|+++|++|+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l~G~hni~N~laAi--ava~~lGi~~~~i~~~l~~fkP  234 (234)
T d1e8ca3         162 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE---IESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQP  234 (234)
T ss_dssp             CTTTCSEEEEEEEEEECSSCEEEEEEETTCCEE---EEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCC
T ss_pred             ccccccccccccccccccccceeeeecCCceEE---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCC
Confidence            11000          011112223332222222   368999999999999999  8999999999999999999985

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-37  Score=264.45  Aligned_cols=202  Identities=20%  Similarity=0.311  Sum_probs=149.2

Q ss_pred             CcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEecccccc---ccCceec
Q 020059           43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME---IPNKYFC  119 (331)
Q Consensus        43 ~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~---~~~~~~~  119 (331)
                      .|+|+||||||||||++||+++|++.|+++++.|+++.++.......    ....+.++.++|+++.+..   .....+.
T Consensus         2 ~kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~~n~~~g~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~   77 (214)
T d1gg4a4           2 ARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLL----RLTPEYDYAVIELGANHQGEIAWTVSLTR   77 (214)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHT----TCCTTCSEEEEECCCSSSSHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCcccCccccchhhh----hcccccccchhhhhhhhcccccccccccC
Confidence            37999999999999999999999999999999999877764332111    1244667899999975432   1222468


Q ss_pred             ccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhcc-CccEEEeccCC-Cccc-----cc
Q 020059          120 PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP-GVKI-----DT  192 (331)
Q Consensus       120 p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~-~~~~-----~~  192 (331)
                      |+++|+|||++||+|+|+++|+|+++|.++++.+++++.+|+|.||+....+.... ..++.+|+... ..++     ..
T Consensus        78 p~~~viTNi~~dHld~~~~~~~~~~~k~~~~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~  157 (214)
T d1gg4a4          78 PEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHV  157 (214)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEE
T ss_pred             chheeeehhccccccccccHHHHHhhhhhHhhhhccCCccccccccHHHHHHHHHhcCCceeeeccCCCCcceeeeeEEE
Confidence            99999999999999999999999999999999999999999999999988876544 34566777642 1111     11


Q ss_pred             ccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 020059          193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (331)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~  253 (331)
                      ......+.+...+..++   +.++++|+||++|+++|+  +++..+|+++++|.++|++|+
T Consensus       158 ~~~~~~~~i~~~~~~~~---~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~~l~~fk  213 (214)
T d1gg4a4         158 TSHGTEFTLQTPTGSVD---VLLPLPGRHNIANALAAA--ALSMSVGATLDAIKAGLANLK  213 (214)
T ss_dssp             CSSSEEEEEEETTEEEE---EEECSSSTHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC
T ss_pred             eCCceEEEEEECCceEE---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            12223444444443333   368999999999999999  899999999999999999997

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.2e-34  Score=247.54  Aligned_cols=200  Identities=22%  Similarity=0.258  Sum_probs=144.0

Q ss_pred             HHHHHHhhC-CCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee-ecccCcccchhhhhhcccCCCCCCCCcEEEEEecc
Q 020059           31 ELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS  108 (331)
Q Consensus        31 ~~~~~~~~~-~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~  108 (331)
                      |++++...+ ..+.++|+||||||||||++||+++|++.|+++. ..|.++.++.....        ..+.+++|+|+++
T Consensus         1 r~~~~~~~l~~~~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~~g~~~~~~~~~~~--------~~~~~~~v~e~~e   72 (207)
T d1j6ua3           1 RLHYFRDTLKREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNY--------EKGNGPVVYELDE   72 (207)
T ss_dssp             HHHHHHHHHHHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSE--------ECCSSCEEEEECT
T ss_pred             ChHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccccchhc--------cCCCcceeEEeee
Confidence            445555432 1356899999999999999999999999998853 45555555543322        3355679999998


Q ss_pred             ccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCC
Q 020059          109 YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG  187 (331)
Q Consensus       109 ~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~  187 (331)
                      .+...  ..++|+++|||||++||+|+|| ++|.|.++|..+++   ..+.+|+|.||+....+..      .++|....
T Consensus        73 ~~~~~--~~~~p~iaviTNI~~dHLd~~~~~~~~~~~~k~~~~~---~~~~~i~n~dd~~~~~~~~------~~~g~~~~  141 (207)
T d1j6ua3          73 SEEFF--SEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISR---NTDLVVTFAEDELTSHLGD------VTFGVKKG  141 (207)
T ss_dssp             TSGGG--GGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHH---TCSEEEEETTCTTTGGGCS------EEECSSSS
T ss_pred             chhhh--hhhhhceeeeeechhhhhhccCccccccccccchhhh---hcccccccccccccccccc------cccccccc
Confidence            75322  2479999999999999999999 79999999999987   4678999999987654432      34443221


Q ss_pred             c-ccc--cc-cccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 020059          188 V-KID--TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (331)
Q Consensus       188 ~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~  253 (331)
                      . .+.  .. .....+.....+..  ...++++++|.||++|+++|+  +++..+|++.++|.++|++|+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--ava~~lgi~~~~i~~~L~~FK  207 (207)
T d1j6ua3         142 TYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI--ALFDSLGYDLAPVLEALEEFR  207 (207)
T ss_dssp             SEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHCC
T ss_pred             cccccccccccccccccccccCcE--EEEEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            1 110  01 11112222223322  123478999999999999999  899999999999999999986

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.98  E-value=7.9e-32  Score=242.24  Aligned_cols=216  Identities=15%  Similarity=0.108  Sum_probs=147.3

Q ss_pred             eeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhhhc----
Q 020059           29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC----   89 (331)
Q Consensus        29 l~~~~~~~~~~---~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~----   89 (331)
                      +.|+..+...+   .++.++|+||||||||||++||+++|+++|+++++.++            .|.+++...+..    
T Consensus        22 l~r~~~~l~~lg~P~~~lkvI~VTGTNGKtST~~~i~~IL~~~G~kvG~~tSP~~~~~~e~~~~~~~~i~~~~~~~~~~~  101 (296)
T d2gc6a2          22 HRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAF  101 (296)
T ss_dssp             CHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhhCCEEEEeccCcHHHHHHHHHHHHHhcCCceeeeecccccchhhhhcccccCCcHHHHHHHHHH
Confidence            45555555443   25789999999999999999999999999999976554            122222211100    


Q ss_pred             ----------ccCC----------------CCCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhhhccC-CHHH
Q 020059           90 ----------IALP----------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN  141 (331)
Q Consensus        90 ----------~~~~----------------~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~  141 (331)
                                ....                ..+...|++++|++.+ ..+..+. +.|+++|||||+.||++++| |+|+
T Consensus       102 i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~e~g~g~~~d~~~~-~~~~~~viTni~~dH~~~lg~tle~  180 (296)
T d2gc6a2         102 VRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTITA  180 (296)
T ss_dssp             HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSTTHHHHCSSHHH
T ss_pred             HHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhhhhHHHHhhhhhhc-ccceeecccccchHHHHhhhhHHHH
Confidence                      0000                0135678999999975 4555554 78999999999999999998 9999


Q ss_pred             HHHHHHHhccccCCCceEEEeCCChhhHHHHh----ccCccEEEeccCCCccc-ccccccceEEEecCceeEEEEeecCC
Q 020059          142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKI-DTEAKTASFEVPAVGVVSQLQLHNMK  216 (331)
Q Consensus       142 ~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  216 (331)
                      |+.+|+++++   +++.+|+..+++.....+.    ....+..+++.+..... ........|.+......  +..+.++
T Consensus       181 Ia~~K~~i~k---~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~  255 (296)
T d2gc6a2         181 IAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGR--ISDLEVP  255 (296)
T ss_dssp             HHHHHHTTCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTEEEEEEEECSSSEEEEEEETTEE--EEEEEES
T ss_pred             HHHhhhcccc---cccccccccccHHHHHHHHHHHHhhCCcccccCcceeeeccccccCCceEEEEcCCCc--cCcCCCC
Confidence            9999999987   5777888777776554432    23345555553211110 11112233444333222  2234789


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHhhcC
Q 020059          217 VMGRHNYHNAAVAALSVLGLDIG------VDVEALNSTIEIL  252 (331)
Q Consensus       217 l~G~~n~~NalaA~~~a~~~~lg------~~~~~i~~~l~~~  252 (331)
                      ++|+||++|+++|+  +++..++      ++.+.|++||++.
T Consensus       256 L~G~hn~~Na~~Ai--a~~~~l~~~~~~~i~~e~I~~GL~~~  295 (296)
T d2gc6a2         256 LVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAAS  295 (296)
T ss_dssp             CCSHHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHH--HHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence            99999999999999  7776654      8999999999863

>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=2.5e-13  Score=106.14  Aligned_cols=73  Identities=18%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             CCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc--eeEEEe
Q 020059          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVIT  329 (331)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~--~~~~i~  329 (331)
                      +|||++.+. ..++.++|||+||+||+||++||+.+.  ++|+++|+|+|.|+|+++... |+++.+.++.  .+.+++
T Consensus         1 vpgR~~~~~-~~~g~~iIdDsYNAnP~Sm~aAl~~l~~~~~~ki~vLGdM~ELG~~s~~~-H~~l~~~~~~~~id~v~~   77 (135)
T d1gg4a1           1 VPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEAC-HVQVGEAAKAAGIDRVLS   77 (135)
T ss_dssp             CTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTHHHHH-HHHHHHHHHHHTCSEEEE
T ss_pred             CCCCCeEEE-cCCCcEEEecCCcCCHHHHHHHHHHhhccCCCceEEEcccccchhhHHHH-HHHHHHHHHhhcCCeEee
Confidence            689999997 468899999999999999999998873  468899999999999998655 8999988854  355554

>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.2e-10  Score=91.03  Aligned_cols=68  Identities=37%  Similarity=0.563  Sum_probs=57.5

Q ss_pred             CCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEE
Q 020059          254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVI  328 (331)
Q Consensus       254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i  328 (331)
                      |+|+|||.+. ..+++.+|||++++||+|+.+|++.+. .++++||+|+..++.      ||.+|.+.++. .+.++
T Consensus         1 GLpHR~e~v~-~~~gv~fiNDSKaTn~~a~~~Al~~~~~~~~iiLI~GG~~K~~------d~~~L~~~i~~~~~~v~   70 (140)
T d2jfga2           1 GLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA------DFSPLARYLNGDNVRLY   70 (140)
T ss_dssp             CCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTC------CCGGGGGGSCSSSEEEE
T ss_pred             CCCcceEEEE-EcCCEEEEECCccccHHHHHHHHhhhhccCceEEEeecccccc------chhhhhhhhhccchhhh
Confidence            5899999997 589999999999999999999999996 468999999998875      68888888854 34444

>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.7e-09  Score=86.31  Aligned_cols=69  Identities=16%  Similarity=0.012  Sum_probs=50.0

Q ss_pred             CCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEEe
Q 020059          255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT  329 (331)
Q Consensus       255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i~  329 (331)
                      +|||||++. ..+++.||+|| ||||+|++++++.+   ..+++++|+|+.+++...    +..++++.+.+ .+.+|+
T Consensus         1 V~GR~E~i~-~~~~p~VIvDy-AHNp~ai~~l~~~~k~~~~~~~~~V~g~~gdr~~~----~~~~~~~~~~~~~D~vi~   73 (160)
T d1e8ca2           1 VCGRMEVFT-APGKPTVVVDY-AHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKG----KRPLMGAIAEEFADVAVV   73 (160)
T ss_dssp             CTTSSEEEC-CTTSCEEEEEC-CCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCST----HHHHHHHHHHHHCSEEEE
T ss_pred             CCCCcEEEe-cCCCCEEEEEC-CCCHHHHHHHHHHhhhhcccccceeeeehhcccch----hhhhhhccchhccchhhh
Confidence            699999995 34667888885 99999999988776   357899999999888432    23345555533 344444

>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=4.7e-08  Score=75.62  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=47.8

Q ss_pred             CceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcce
Q 020059          257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH  324 (331)
Q Consensus       257 gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~  324 (331)
                      ||||++.  .++..+|.|+ ||||+|++++++.+    +.+++++|+|.+.++       |.+.++..+.+.
T Consensus         1 GR~e~i~--~~~~~iilD~-AHN~~a~~~l~~~l~~~~~~~~~~~i~g~~~dk-------d~~~~l~~l~~~   62 (137)
T d1o5za1           1 GRFEILE--KNGKMYILDG-AHNPHGAESLVRSLKLYFNGEPLSLVIGILDDK-------NREDILRKYTGI   62 (137)
T ss_dssp             TSSEEEE--ETTEEEEECC-CCSHHHHHHHHHHHHHHCTTCCEEEEECCCTTS-------CHHHHHGGGTTT
T ss_pred             CCcEEEc--CCCCEEEEEC-CCCHHHHHHHHHHHHhhhccccceeeecccccc-------cHHHHHHHHHhh
Confidence            8999995  4567778885 99999999987766    357899999999887       788898888654

>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=98.58  E-value=1.2e-08  Score=78.03  Aligned_cols=58  Identities=17%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             CCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcce
Q 020059          256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH  324 (331)
Q Consensus       256 ~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~  324 (331)
                      |||||++.  .++ .+|.|+ ||||+|++.+++.+   ..+++++|+|.+.++       |...+++.+.+.
T Consensus         2 PGR~e~i~--~~~-~iilD~-AHN~~~~~~l~~~l~~~~~~~~~~v~g~~~dK-------d~~~~l~~l~~~   62 (129)
T d2gc6a1           2 PARLEKIS--DTP-LIVIDG-AHNPDGINGLITALKQLFSQPITVIAGILADK-------DYAAMADRLTAA   62 (129)
T ss_dssp             TTSSEEEE--TTT-TEEECC-CCSHHHHHHHHHHHHHHCSSCCEEEECCC-----------CCSSSSTTTTT
T ss_pred             CCceEEec--CCC-cEEEEC-CCCHHHHHHHhhccccccchhhhhhccccCCc-------cHHHHHHhhhhh
Confidence            89999994  344 566674 99999999887766   357889999999888       667777777543

>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=5.3e-08  Score=76.68  Aligned_cols=71  Identities=14%  Similarity=0.094  Sum_probs=46.3

Q ss_pred             CCCCceeEEe-eecCcEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcceeEEE
Q 020059          254 TPPHRMQIVH-RDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVI  328 (331)
Q Consensus       254 ~~~gR~e~~~-~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~~~~i  328 (331)
                      |++||||++. ...+++.+|||| ||||.+++++|+++    +++++++||+.........   -+.++...++..+.+|
T Consensus         1 Gv~rR~e~i~~~~~~~~~vidDy-AH~P~~i~a~l~a~r~~~~~~~ii~vf~p~~~~r~~~---~~~~~~~~~~~aD~vi   76 (151)
T d1j6ua2           1 GVHRRFSIAFHDPETNIYVIDDY-AHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLER---EDGNFAKALQLADEVV   76 (151)
T ss_dssp             CCTTSSEEEEEETTTTEEEEEEC-CCSHHHHHHHHHHHHHHCSSSEEEEEECCBC-----------CHHHHHHTTSSEEE
T ss_pred             CCCCCeEEEEecCCCCEEEEEEC-CCCHHHHHHHHHHhhhhhcccceeeeeeccccchhhH---HHHHHHHHhhccccee
Confidence            5899999984 235679999995 99999999988875    3567888887654332211   2444555555554444

>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=5.2e-06  Score=64.49  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=35.2

Q ss_pred             CCCCceeEEee---ecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEc
Q 020059          254 TPPHRMQIVHR---DIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG  300 (331)
Q Consensus       254 ~~~gR~e~~~~---~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G  300 (331)
                      |+.+|||+++.   ..+++.||||| ||+|.+++++|++++    .+++++++.
T Consensus         1 Gv~RRfe~~ge~~~~~~~~~VidDy-AHhPtaI~a~l~a~r~~~~~~~~~~~~~   53 (152)
T d1p3da2           1 GAGRRFDQLGEFIRPNGKVRLVDDY-GHHPTEVGVTIKAAREGWGDKRIVMIFQ   53 (152)
T ss_dssp             CBTTSSEEEEEEEETTEEEEEEEEC-CCSHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCcceEEeceecccCCCcEEEEeC-CCCCHHHHHHHHHhhhhhhhhhhheeee
Confidence            57899999952   24789999995 999999999988773    345555543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=1.2e-05  Score=56.69  Aligned_cols=29  Identities=3%  Similarity=-0.212  Sum_probs=27.2

Q ss_pred             ceeeeeccccccCChHHHHHHHcCCeeee
Q 020059            2 WMLWLFLLEFQLKATGLACLLQSGKRVMS   30 (331)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~   30 (331)
                      .++||+|+|++++|||+++|+++|+|+++
T Consensus        61 ~d~vV~SsAI~~~npel~~A~~~gIpv~~   89 (89)
T d1j6ua1          61 PDLVIKTPAVRDDNPEIVRARMERVPIEN   89 (89)
T ss_dssp             CSEEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred             CCEEEEecCcCCCCHHHHHHHHcCCCccC
Confidence            47899999999999999999999999975

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0033  Score=50.67  Aligned_cols=32  Identities=28%  Similarity=0.185  Sum_probs=28.1

Q ss_pred             cEEEEeCCC---ChHhHHHHHHHHHHhcCCCeeec
Q 020059           44 KILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        44 ~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      |.+-||||.   ||||++.-|++.|.+.|+++..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i   36 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            567788887   99999999999999999998653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.16  E-value=0.027  Score=43.16  Aligned_cols=35  Identities=17%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      +++|+|||.+  ||||+..-|..-|+..|++++..-+
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~   37 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   37 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            5799999985  7999999999999999999976543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.036  Score=47.83  Aligned_cols=34  Identities=38%  Similarity=0.465  Sum_probs=30.3

Q ss_pred             CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .+..+|||||+  .||||...-|...+...|++++.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav   87 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV   87 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee
Confidence            46789999999  89999999999999999998754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.88  E-value=0.022  Score=48.22  Aligned_cols=32  Identities=34%  Similarity=0.544  Sum_probs=27.0

Q ss_pred             CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059           41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA   72 (331)
Q Consensus        41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~   72 (331)
                      ++.|+|||||..  ||||++..|.++|+..|.++
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~   35 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKA   35 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCe
Confidence            466899999985  79999999999999888765

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.09  E-value=0.046  Score=45.93  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             CcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        43 ~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +++|+|.  |-.|||||+.-|++.|.+.|+++.+
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLl   35 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI   35 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            5778887  7889999999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.057  Score=40.85  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      .|+|+|||..  ||||...-|..-|...|++++...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~   37 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   37 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence            4799999985  799999999999999999986543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.46  E-value=0.05  Score=42.01  Aligned_cols=31  Identities=45%  Similarity=0.553  Sum_probs=26.9

Q ss_pred             CcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059           43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      +|+|.|+|.  .||||++..|+..|...|+.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~   33 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNK   33 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            478888887  6899999999999999888763

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.44  E-value=0.06  Score=44.61  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             CcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059           43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        43 ~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +++|+|+  |=.||||++.-|++.|.+.|+++.+
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVll   34 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV   34 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEE
Confidence            4678887  5669999999999999999999864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.03  E-value=0.19  Score=42.97  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      .+..+|+|||+  .||||+..-|...+...|++++.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaV   84 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV   84 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceee
Confidence            46789999997  57999999999989999999864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.11  Score=43.09  Aligned_cols=35  Identities=17%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      ..++|.++  |=.|||||+..|+..|...|+++.+..
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD   55 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT   55 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            55677776  567999999999999999999986543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.18  E-value=0.092  Score=42.07  Aligned_cols=33  Identities=27%  Similarity=0.535  Sum_probs=28.8

Q ss_pred             CcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059           43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        43 ~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      +|+|+|+   |-.||||++.-|+..|...|+++.+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~Vlli   36 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   36 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            4789998   45899999999999999999998654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.19  Score=41.77  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=29.3

Q ss_pred             CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059           42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGG   76 (331)
Q Consensus        42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~g   76 (331)
                      ..++|.++  |-.||||++..|+..|.+.|+++.+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            34677787  568999999999999999999986544

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.24  E-value=0.21  Score=37.96  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             cEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059           44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      ++|.|+|.  .||||++..|+.-|...|.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            68899987  5899999999999998887763

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.60  E-value=0.26  Score=37.84  Aligned_cols=32  Identities=28%  Similarity=0.458  Sum_probs=26.8

Q ss_pred             CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      ..-+|||+|-  .||||++..|...|...+..+.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~   54 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC   54 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhccccccce
Confidence            4458999975  5899999999999999887764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.55  E-value=0.28  Score=39.08  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=27.5

Q ss_pred             cEEEEeC---CCChHhHHHHHHHHHHhcCCCeeec
Q 020059           44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG   75 (331)
Q Consensus        44 ~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~~   75 (331)
                      ++|+|+|   =.||||++.-|+..|...|+++.+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vlli   37 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            6888884   5799999999999999999998654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=0.32  Score=41.15  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=27.0

Q ss_pred             CCCcEEEEeCC--CChHhHHHHHHHHHHhc--CCCeeec
Q 020059           41 RSIKILAVTGT--NGKSTVVTFVGQMLNHL--GIEAFVG   75 (331)
Q Consensus        41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~--g~~~~~~   75 (331)
                      +...+|||+|.  .||||++..|..+|+..  +.++.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~I  116 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI  116 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEE
Confidence            34569999996  58999999999999854  4555443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=85.27  E-value=0.54  Score=37.21  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=27.9

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      +..+|...|-+  |||||+.=|++.++..|+++++...
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~   46 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA   46 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            44566655554  8999999999999999999875543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=84.47  E-value=0.65  Score=36.73  Aligned_cols=36  Identities=25%  Similarity=0.482  Sum_probs=28.4

Q ss_pred             CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      +.++|.+.|-+  |||||..=|++.++..|.++++...
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~   42 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG   42 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence            45677666654  7999999999999999999876543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=83.86  E-value=0.68  Score=36.77  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=27.3

Q ss_pred             CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      +..+|...|-  .|||||..=|++-+...|+++++...
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~   47 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA   47 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence            4446655554  38999999999999999999876543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=0.39  Score=37.75  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=21.5

Q ss_pred             cEEEEeCC--CChHhHHHHHHHHHHhcC
Q 020059           44 KILAVTGT--NGKSTVVTFVGQMLNHLG   69 (331)
Q Consensus        44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g   69 (331)
                      -+|||||.  .||||.+..|...|...+
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~   30 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQNE   30 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchhc
Confidence            58999986  589999999998886543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=82.07  E-value=0.46  Score=37.41  Aligned_cols=27  Identities=44%  Similarity=0.732  Sum_probs=21.0

Q ss_pred             Cc-EEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059           43 IK-ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        43 ~~-~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      ++ +|||||.  .||||++.+    |++.|+.+.
T Consensus         2 mk~iIgitG~igSGKStv~~~----l~~~G~~vi   31 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANA----FADLGINVI   31 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHH----HHHTTCEEE
T ss_pred             CCEEEEEECCCcCCHHHHHHH----HHHCCCcEE
Confidence            45 9999997  689998875    567787763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.71  E-value=0.65  Score=34.77  Aligned_cols=30  Identities=23%  Similarity=0.404  Sum_probs=25.2

Q ss_pred             cEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059           44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF   73 (331)
Q Consensus        44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~   73 (331)
                      +.|.|||.+  ||||+...+...|+..|.++.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~   33 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD   33 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence            467888875  799999999999999887763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=1  Score=35.60  Aligned_cols=35  Identities=17%  Similarity=0.365  Sum_probs=27.2

Q ss_pred             CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      ..+|...|-+  |||||..=|++.++..|.++++...
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   45 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG   45 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            3466555543  8999999999999999999876554

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.24  E-value=0.85  Score=37.21  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=28.7

Q ss_pred             CcEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059           43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV   74 (331)
Q Consensus        43 ~~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~   74 (331)
                      +|.|.|||    +-||+-|++-|..+|+.+|+++..
T Consensus         1 mKyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~   36 (273)
T d2vo1a1           1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS   36 (273)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEeCCcccccchHHHHHHHHHHHHhCCceeEE
Confidence            46789998    689999999999999999999854

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=80.10  E-value=0.93  Score=35.88  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=23.2

Q ss_pred             CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc
Q 020059           43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN   77 (331)
Q Consensus        43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~   77 (331)
                      ..+|...|-+  |||||..=|++-++..|.++++...
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   48 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA   48 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence            3466555543  8999999999999999999876554