Citrus Sinensis ID: 020060
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | 2.2.26 [Sep-21-2011] | |||||||
| Q8N0Z6 | 440 | Tetratricopeptide repeat | yes | no | 0.972 | 0.731 | 0.360 | 7e-46 | |
| Q5BK48 | 440 | Tetratricopeptide repeat | yes | no | 0.921 | 0.693 | 0.379 | 3e-45 | |
| Q0P5H9 | 440 | Tetratricopeptide repeat | yes | no | 0.945 | 0.711 | 0.367 | 1e-43 | |
| Q99LG4 | 440 | Tetratricopeptide repeat | yes | no | 0.921 | 0.693 | 0.370 | 3e-43 | |
| P10505 | 665 | Anaphase-promoting comple | yes | no | 0.577 | 0.287 | 0.274 | 8e-06 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.634 | 0.200 | 0.242 | 0.0001 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.634 | 0.200 | 0.242 | 0.0001 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.634 | 0.200 | 0.242 | 0.0001 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | no | no | 0.634 | 0.202 | 0.242 | 0.0001 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.634 | 0.200 | 0.242 | 0.0001 |
| >sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5 OS=Homo sapiens GN=TTC5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 184 bits (468), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 185/344 (53%), Gaps = 22/344 (6%)
Query: 8 IWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYE 67
I + + D LY ++ +F + + + Q + + E S +A
Sbjct: 12 ILQKLQELVDQLYSFRDCYFETHSVEDAGRKQQDVQKEMEKTLQQMEEVVGSVQGKAQVL 71
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
L GK L+V P+Y AE+ LSKAVKL P L +AW LG WKKGD+ AA CF+ AL+
Sbjct: 72 MLTGKALNVTPDYSPKAEELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGALT 131
Query: 128 KGPNKKILCQLSMLERSMAQGSENQ-AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT 186
NK L LSM+ R + +E++ + V +S++ AK A+ +DV DG SWY LGN+ L+
Sbjct: 132 HCRNKVSLQNLSMVLRQLRTDTEDEHSHHVMDSVRQAKLAVQMDVHDGRSWYILGNSYLS 191
Query: 187 SFFVTGSWDHSKL-LQSLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERALSGFEA 244
+F TG + K+ Q+L AY AEK D + SNPDL+ N AT++KY E+Y AL GF
Sbjct: 192 LYFSTG--QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSR 249
Query: 245 SALKDPSL-NATEEVQMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL-------- 293
+A DP+ + Q ++ LD++ +LL KG KTK++ S+ SL L
Sbjct: 250 AAALDPAWPEPRQREQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHY 309
Query: 294 -SSSHKRATVDL-----LSEGLNKAVAVVGKVLFFVKHENVTPL 331
S+S ++ T++L L G+N ++GKV+F + E P
Sbjct: 310 QSASGQKVTLELKPLSTLQPGVNSGAVILGKVVFSLTTEEKVPF 353
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Adapter protein involved in p53/TP53 response that acts by regulating and mediating the assembly of multi-protein complexes. Required to facilitate the interaction between JMY and p300/EP300 and increase p53/TP53-dependent transcription and apoptosis. Prevents p53/TP53 degradation by MDM2. Homo sapiens (taxid: 9606) |
| >sp|Q5BK48|TTC5_RAT Tetratricopeptide repeat protein 5 OS=Rattus norvegicus GN=Ttc5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 185/343 (53%), Gaps = 38/343 (11%)
Query: 17 DDLYHVKETFFPA----NPDDKVSKLQNESDLALR----LLGSVPPEQRKSPTQRATYEY 68
D LY ++++F + K +Q E + LR +LGSV E A
Sbjct: 21 DQLYCFRDSYFETHSVEDAGQKQQDVQEEMEKTLRQMEEVLGSVQVE--------AQALM 72
Query: 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128
LKGK L+V P+Y +AE LSKAVKL P L +AW LG WKKGD+ AA CF+ AL+
Sbjct: 73 LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGALTH 132
Query: 129 GPNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187
NK L LSM+ R + S + + V +S++ AK A+ +DV DG SWY LGNA L+
Sbjct: 133 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 192
Query: 188 FFVTGSWDHSKL-LQSLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
+F TG + K+ Q+L AY AEK D + SNPDL+ N AT++KY E+Y AL GF +
Sbjct: 193 YFNTG--QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 250
Query: 246 ALKDPSLNATEEV-QMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL--------- 293
A DP+ ++ Q ++ L ++ NLL KG K K++ S+ +L L
Sbjct: 251 ATLDPAWPEPQQREQQLLEFLSRLTNLLASKGKTKPKKLQSMLGNLRPAHLGPCGDGRYQ 310
Query: 294 SSSHKRATVDL-----LSEGLNKAVAVVGKVLFFVKHENVTPL 331
S++ ++ T+ L L G+N V+GKV+F + E P
Sbjct: 311 SATGQKVTLQLKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPF 353
|
Adapter protein involved in p53/TP53 response that acts by regulating and mediating the assembly of multi-protein complexes. Required to facilitate the interaction between JMY and p300/EP300 and increase p53/TP53-dependent transcription and apoptosis. Prevents p53/TP53 degradation by MDM2. Rattus norvegicus (taxid: 10116) |
| >sp|Q0P5H9|TTC5_BOVIN Tetratricopeptide repeat protein 5 OS=Bos taurus GN=TTC5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 176/335 (52%), Gaps = 22/335 (6%)
Query: 17 DDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV 76
D LY +E +F + D + Q + + E S A L GK L+V
Sbjct: 21 DQLYSFRECYFETHSVDDAGRKQQDVREEMEKTLQQMEEVVGSVQGNAQVLMLTGKALNV 80
Query: 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILC 136
P+Y AE+ LSKAVKL P L +AW LG WKKGD+ AA CF+ AL+ NK L
Sbjct: 81 TPDYSPKAEELLSKAVKLEPKLVEAWNQLGEVYWKKGDVAAAHTCFSGALTHCKNKVSLQ 140
Query: 137 QLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWD 195
LSM+ R + S + + V +S++ AK A+ +D+ DG SWY LGNA L+ +F TG
Sbjct: 141 NLSMVLRQLRTDSGDEHSRHVMDSVRQAKLAVQMDILDGRSWYILGNAYLSLYFNTG--Q 198
Query: 196 HSKL-LQSLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL- 252
+ K+ Q+L AY AEK D SNPDL+ N AT++KY ENY AL GF +A DP+
Sbjct: 199 NPKISQQALSAYAQAEKVDRTASSNPDLHLNRATLHKYEENYGEALEGFSRAAALDPAWP 258
Query: 253 NATEEVQMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL---------SSSHKRAT 301
+ Q +++ L ++ + L KG KTK++ S+ +L L S+S ++ T
Sbjct: 259 EPWQREQQLLDFLTRLTSFLESKGKVKTKKLQSMLGNLRPAHLGPCGDGRYQSASGQKVT 318
Query: 302 VD-----LLSEGLNKAVAVVGKVLFFVKHENVTPL 331
++ L G+N V+GKV+F + E P
Sbjct: 319 LERKPLNALQPGVNSGAVVLGKVVFSLTTEEKVPF 353
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Adapter protein involved in p53/TP53 response that acts by regulating and mediating the assembly of multi-protein complexes. Required to facilitate the interaction between JMY and p300/EP300 and increase p53/TP53-dependent transcription and apoptosis. Prevents p53/TP53 degradation by MDM2. Bos taurus (taxid: 9913) |
| >sp|Q99LG4|TTC5_MOUSE Tetratricopeptide repeat protein 5 OS=Mus musculus GN=Ttc5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 185/343 (53%), Gaps = 38/343 (11%)
Query: 17 DDLYHVKETFFPANPDDKVSK----LQNESDLALR----LLGSVPPEQRKSPTQRATYEY 68
D LY ++++F + + + +Q E + L+ +LGS E A
Sbjct: 21 DRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVE--------AQALM 72
Query: 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128
LKGK L+V P+Y +AE LSKAVKL P L +AW LG WKKGD+ +A CF+ AL+
Sbjct: 73 LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVASAHTCFSGALTH 132
Query: 129 GPNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187
NK L LSM+ R + S + + V +S++ AK A+ +DV DG SWY LGNA L+
Sbjct: 133 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 192
Query: 188 FFVTGSWDHSKL-LQSLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
+F TG + K+ Q+L AY AEK D + SNPDL+ N AT++KY E+Y AL GF +
Sbjct: 193 YFNTG--QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 250
Query: 246 ALKDPSLNATEEV-QMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL--------- 293
A DP ++ Q ++ L ++ +LL KG K K++ S+ SL L
Sbjct: 251 AALDPVWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQ 310
Query: 294 SSSHKRATVDL-----LSEGLNKAVAVVGKVLFFVKHENVTPL 331
S+S ++ T++L L G+N V+GKV+F + E P
Sbjct: 311 SASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPF 353
|
Adapter protein involved in p53/TP53 response that acts by regulating and mediating the assembly of multi-protein complexes. Required to facilitate the interaction between JMY and p300/EP300 and increase p53/TP53-dependent transcription and apoptosis. Prevents p53/TP53 degradation by MDM2. Mus musculus (taxid: 10090) |
| >sp|P10505|APC3_SCHPO Anaphase-promoting complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nuc2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 92/233 (39%), Gaps = 42/233 (18%)
Query: 45 ALRLLGSVPPEQRKSPTQRA----TY---------EYLKGKILDVVPEYRKDAED----- 86
AL S+P EQ+ +P A TY E + K+ D+ P KD E
Sbjct: 348 ALNCFQSLPIEQQNTPFVLAKLGITYFELVDYEKSEEVFQKLRDLSPSRVKDMEVFSTAL 407
Query: 87 -HLSKAVKL----------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL 135
HL K+V L NP ++W L +C + + A C N A+ P +
Sbjct: 408 WHLQKSVPLSYLAHETLETNPYSPESWCILANCFSLQREHSQALKCINRAIQLDPTFEYA 467
Query: 136 CQLSMLERSMAQGSENQA-EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194
L QG E+ A E E+S ++AI ++V+ N+WY LG L TG
Sbjct: 468 YTL--------QGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGLGMVYLK----TGRN 515
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASAL 247
D + A N + +Y C K L+ Y+RA E S+L
Sbjct: 516 DQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYDRACKLDEKSSL 568
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Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Interacts with spindle apparatus, chromosomes, or nuclear envelope, and interconnect nuclear and cytoskeletal functions in mitosis, so the elongation of the spindle in anaphase is blocked. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLE 142
A D +A++L P DA+ L + + +KG + A++C+N AL P + L L+ ++
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 337
Query: 143 R--------------------SMAQGSENQAEI------VEESIQHAKEAITLDVKDGNS 176
R A N A + ++E++ H KEAI + ++
Sbjct: 338 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 397
Query: 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLE 233
+ N+GN V G +L+ Y A ++ NP D + N A+++K
Sbjct: 398 YSNMGNTLKEMQDVQG---------ALQCYTRA-----IQINPAFADAHSNLASIHKDSG 443
Query: 234 NYERALSGFEASALK------DPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287
N A++ + +ALK D N +Q++ + D E + K V+ +A
Sbjct: 444 NIPEAIASYR-TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM------KKLVSIVAEQ 496
Query: 288 LAVVKLSSSHKRATVDL-LSEGLNKAVA 314
L +L S H ++ LS G KA+A
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIA 524
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLE 142
A D +A++L P DA+ L + + +KG + A++C+N AL P + L L+ ++
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 337
Query: 143 R--------------------SMAQGSENQAEI------VEESIQHAKEAITLDVKDGNS 176
R A N A + ++E++ H KEAI + ++
Sbjct: 338 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 397
Query: 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLE 233
+ N+GN V G +L+ Y A ++ NP D + N A+++K
Sbjct: 398 YSNMGNTLKEMQDVQG---------ALQCYTRA-----IQINPAFADAHSNLASIHKDSG 443
Query: 234 NYERALSGFEASALK------DPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287
N A++ + +ALK D N +Q++ + D E + K V+ +A
Sbjct: 444 NIPEAIASYR-TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM------KKLVSIVADQ 496
Query: 288 LAVVKLSSSHKRATVDL-LSEGLNKAVA 314
L +L S H ++ LS G KA+A
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIA 524
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLE 142
A D +A++L P DA+ L + + +KG + A++C+N AL P + L L+ ++
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 337
Query: 143 R--------------------SMAQGSENQAEI------VEESIQHAKEAITLDVKDGNS 176
R A N A + ++E++ H KEAI + ++
Sbjct: 338 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 397
Query: 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLE 233
+ N+GN V G +L+ Y A ++ NP D + N A+++K
Sbjct: 398 YSNMGNTLKEMQDVQG---------ALQCYTRA-----IQINPAFADAHSNLASIHKDSG 443
Query: 234 NYERALSGFEASALK------DPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287
N A++ + +ALK D N +Q++ + D E + K V+ +A
Sbjct: 444 NIPEAIASYR-TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM------KKLVSIVADQ 496
Query: 288 LAVVKLSSSHKRATVDL-LSEGLNKAVA 314
L +L S H ++ LS G KA+A
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIA 524
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLE 142
A D +A++L P DA+ L + + +KG + A++C+N AL P + L L+ ++
Sbjct: 268 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 327
Query: 143 R--------------------SMAQGSENQAEI------VEESIQHAKEAITLDVKDGNS 176
R A N A + ++E++ H KEAI + ++
Sbjct: 328 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 387
Query: 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLE 233
+ N+GN V G +L+ Y A ++ NP D + N A+++K
Sbjct: 388 YSNMGNTLKEMQDVQG---------ALQCYTRA-----IQINPAFADAHSNLASIHKDSG 433
Query: 234 NYERALSGFEASALK------DPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287
N A++ + +ALK D N +Q++ + D E + K V+ +A
Sbjct: 434 NIPEAIASYR-TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM------KKLVSIVAEQ 486
Query: 288 LAVVKLSSSHKRATVDL-LSEGLNKAVA 314
L +L S H ++ LS G KA+A
Sbjct: 487 LEKNRLPSVHPHHSMLYPLSHGFRKAIA 514
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLE 142
A D +A++L P DA+ L + + +KG + A++C+N AL P + L L+ ++
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 337
Query: 143 R--------------------SMAQGSENQAEI------VEESIQHAKEAITLDVKDGNS 176
R A N A + ++E++ H KEAI + ++
Sbjct: 338 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 397
Query: 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLE 233
+ N+GN V G +L+ Y A ++ NP D + N A+++K
Sbjct: 398 YSNMGNTLKEMQDVQG---------ALQCYTRA-----IQINPAFADAHSNLASIHKDSG 443
Query: 234 NYERALSGFEASALK------DPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287
N A++ + +ALK D N +Q++ + D E + K V+ +A
Sbjct: 444 NIPEAIASYR-TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM------KKLVSIVADQ 496
Query: 288 LAVVKLSSSHKRATVDL-LSEGLNKAVA 314
L +L S H ++ LS G KA+A
Sbjct: 497 LEKNRLPSVHPHHSMLYPLSHGFRKAIA 524
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| 255582893 | 385 | Tetratricopeptide repeat protein, putati | 0.984 | 0.846 | 0.803 | 1e-155 | |
| 356536234 | 417 | PREDICTED: tetratricopeptide repeat prot | 0.987 | 0.784 | 0.779 | 1e-153 | |
| 356575619 | 416 | PREDICTED: tetratricopeptide repeat prot | 1.0 | 0.795 | 0.767 | 1e-151 | |
| 449434562 | 417 | PREDICTED: tetratricopeptide repeat prot | 0.993 | 0.788 | 0.741 | 1e-146 | |
| 359472893 | 401 | PREDICTED: tetratricopeptide repeat prot | 0.984 | 0.812 | 0.788 | 1e-145 | |
| 359472891 | 420 | PREDICTED: tetratricopeptide repeat prot | 0.984 | 0.776 | 0.788 | 1e-145 | |
| 297737733 | 412 | unnamed protein product [Vitis vinifera] | 0.984 | 0.791 | 0.788 | 1e-145 | |
| 224108367 | 392 | predicted protein [Populus trichocarpa] | 0.909 | 0.767 | 0.752 | 1e-139 | |
| 357444587 | 417 | Tetratricopeptide repeat protein [Medica | 0.987 | 0.784 | 0.715 | 1e-135 | |
| 297596866 | 431 | Os01g0506200 [Oryza sativa Japonica Grou | 0.969 | 0.744 | 0.676 | 1e-127 |
| >gi|255582893|ref|XP_002532218.1| Tetratricopeptide repeat protein, putative [Ricinus communis] gi|223528075|gb|EEF30149.1| Tetratricopeptide repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 262/326 (80%), Positives = 296/326 (90%)
Query: 6 EDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRAT 65
ED+WA+ KAADDLY +++TFFP NP DK SKL ++SDL+L LL S+P EQRK+P QRA
Sbjct: 18 EDLWAKVKKAADDLYTIRDTFFPLNPVDKTSKLHSQSDLSLHLLDSIPLEQRKTPVQRAK 77
Query: 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125
YEYL+GKILDV PEYRK+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDLP+AKNCF+LA
Sbjct: 78 YEYLRGKILDVFPEYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLPSAKNCFSLA 137
Query: 126 LSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
L+KGPNKKILC LSMLER MAQG+ENQAE+V+ESI+HAK+AI LDVKDG SWYNLGNA L
Sbjct: 138 LNKGPNKKILCLLSMLERRMAQGAENQAELVKESIRHAKDAIALDVKDGYSWYNLGNALL 197
Query: 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
TSFFVTG+WDH +LQSLKAYQNAEKDERM+SNPDLYFN ATVNKYLENYERALSGFEA+
Sbjct: 198 TSFFVTGAWDHGMMLQSLKAYQNAEKDERMQSNPDLYFNSATVNKYLENYERALSGFEAA 257
Query: 246 ALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATVDLL 305
ALKDPSLNATEEV+ MVNLLDK+EN L+G AK KR+ S+ASSLA V L+SS KRATVDLL
Sbjct: 258 ALKDPSLNATEEVEKMVNLLDKLENFLRGQAKAKRLTSVASSLAAVNLNSSFKRATVDLL 317
Query: 306 SEGLNKAVAVVGKVLFFVKHENVTPL 331
S GLNKAV++VGKVLFF+KHENVTPL
Sbjct: 318 SNGLNKAVSIVGKVLFFIKHENVTPL 343
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536234|ref|XP_003536644.1| PREDICTED: tetratricopeptide repeat protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/327 (77%), Positives = 297/327 (90%)
Query: 5 EEDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRA 64
EE+ +RA +AA+DLYH+++T+FP NPDD++SKLQ+ESDLAL+LL S+PPEQRKSP QRA
Sbjct: 6 EEEPLSRAARAAEDLYHLRDTYFPPNPDDRISKLQHESDLALQLLDSIPPEQRKSPMQRA 65
Query: 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNL 124
T+EYL+GK+LDV P YRK+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDL AAKNC +L
Sbjct: 66 TFEYLRGKMLDVFPNYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLTAAKNCLSL 125
Query: 125 ALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184
AL KGPNKKILCQLSML+R M+QG+ENQAE+VEESIQHAKEAITLDVKDGN+WYNLGNAC
Sbjct: 126 ALGKGPNKKILCQLSMLKRKMSQGAENQAELVEESIQHAKEAITLDVKDGNAWYNLGNAC 185
Query: 185 LTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244
LTSFFVTG+WDH+KLL SLKAYQNAEKDE MKSNPDL+FN ATVNKYLENY+RALSGFEA
Sbjct: 186 LTSFFVTGAWDHTKLLHSLKAYQNAEKDESMKSNPDLFFNGATVNKYLENYQRALSGFEA 245
Query: 245 SALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATVDL 304
+ALKDP LNA EEVQ +VNLLDK++NLLKGH + KR+ASLASSL V L SS++R T+DL
Sbjct: 246 AALKDPGLNAVEEVQKIVNLLDKVDNLLKGHVRAKRMASLASSLVAVDLKSSYRRVTIDL 305
Query: 305 LSEGLNKAVAVVGKVLFFVKHENVTPL 331
LSEG N+A+A+ GKV FFV+ E+V PL
Sbjct: 306 LSEGPNRALALEGKVFFFVRSESVAPL 332
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575619|ref|XP_003555936.1| PREDICTED: tetratricopeptide repeat protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 254/331 (76%), Positives = 292/331 (88%)
Query: 1 MEKVEEDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSP 60
M E+ ++ +AA+DLYH+++ +FP NPDD++SKLQ ESDLAL+LL S+P EQRKSP
Sbjct: 1 MSNPSEEPLSKVARAAEDLYHLRDAYFPPNPDDRISKLQQESDLALQLLDSIPSEQRKSP 60
Query: 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120
QRAT EYL+GKILDV P+YR++AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDL +AKN
Sbjct: 61 MQRATIEYLRGKILDVFPDYRREAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLTSAKN 120
Query: 121 CFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180
C +LAL KGPNKKILCQLSML+R M+QGSENQAE+VEESIQHAKEAITLDVKDGNSWYNL
Sbjct: 121 CLSLALDKGPNKKILCQLSMLKRKMSQGSENQAELVEESIQHAKEAITLDVKDGNSWYNL 180
Query: 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240
GNACLTSFFVTG+WDH+KLL SLKAYQNAEKDE MKSNPDLYFN ATVNKYLENY+RALS
Sbjct: 181 GNACLTSFFVTGAWDHTKLLHSLKAYQNAEKDESMKSNPDLYFNSATVNKYLENYQRALS 240
Query: 241 GFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRA 300
GFEA+ALKDP LNA EEVQ +VNLLDK++NLLKGH + KR+ASLASSL V L SS++R
Sbjct: 241 GFEAAALKDPGLNAVEEVQKIVNLLDKVDNLLKGHVRAKRMASLASSLVAVDLKSSYRRV 300
Query: 301 TVDLLSEGLNKAVAVVGKVLFFVKHENVTPL 331
T+DLLSEG N+A+AV GKV FFV E+V PL
Sbjct: 301 TIDLLSEGPNRALAVEGKVFFFVSSESVAPL 331
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434562|ref|XP_004135065.1| PREDICTED: tetratricopeptide repeat protein 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/329 (74%), Positives = 290/329 (88%)
Query: 3 KVEEDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQ 62
+ +E + +AT A ++LY +++TFFP NPDDK SKL+ SDLAL++L S+PPEQR+SP Q
Sbjct: 4 EAKEVTFEKATAAVEELYLIRDTFFPVNPDDKTSKLRELSDLALKILDSIPPEQRRSPLQ 63
Query: 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCF 122
RA YEYL+GK+LDV PEYRK+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDL +AKNCF
Sbjct: 64 RAMYEYLRGKMLDVFPEYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSSAKNCF 123
Query: 123 NLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182
LAL+K P KK+LCQLSMLER MAQG+EN+A++VEESIQHAKEA+TLDVKDGNSWYNLGN
Sbjct: 124 TLALNKRPEKKLLCQLSMLERKMAQGTENEAKLVEESIQHAKEAVTLDVKDGNSWYNLGN 183
Query: 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGF 242
ACLTSFFVTG+WDHSKLLQSLKAYQNAEKDE+M SNPDLYFNCATVNKYLENY+RALSGF
Sbjct: 184 ACLTSFFVTGAWDHSKLLQSLKAYQNAEKDEKMLSNPDLYFNCATVNKYLENYDRALSGF 243
Query: 243 EASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATV 302
EA+ALKDPSL+AT EV MV LLDK++N+LK HAK+++ AS SS+ + + S+KRAT+
Sbjct: 244 EAAALKDPSLSATREVHKMVTLLDKLDNMLKAHAKSRKGASSPSSVDAISSNFSYKRATI 303
Query: 303 DLLSEGLNKAVAVVGKVLFFVKHENVTPL 331
LSEGLNK VAV GKVLFF+KH+++ PL
Sbjct: 304 SHLSEGLNKTVAVTGKVLFFIKHDSLAPL 332
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472893|ref|XP_003631209.1| PREDICTED: tetratricopeptide repeat protein 5 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/326 (78%), Positives = 293/326 (89%)
Query: 6 EDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRAT 65
E+++ A +AADDLY +++T+FPANP +K+S+LQ +SDLAL LL S+P EQR+ P QR T
Sbjct: 10 EELFGEARRAADDLYQLRDTYFPANPAEKISELQRKSDLALSLLDSLPLEQRRLPIQRRT 69
Query: 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125
YE+L+GKILDV P+YRK+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDL +AKNCF LA
Sbjct: 70 YEFLRGKILDVFPDYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLASAKNCFTLA 129
Query: 126 LSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
L KG NK+ILCQLSMLER MA GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL
Sbjct: 130 LGKGSNKEILCQLSMLERRMAPGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 189
Query: 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
TSFFVTG+WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA+
Sbjct: 190 TSFFVTGAWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAA 249
Query: 246 ALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATVDLL 305
ALKDP LNA EEVQ +V+LL+K+E+LLKG A+ KR A+LASS A L+ S+KR T+D+L
Sbjct: 250 ALKDPGLNAVEEVQKIVDLLNKLESLLKGQARAKRHAALASSRAADNLNPSYKRITIDIL 309
Query: 306 SEGLNKAVAVVGKVLFFVKHENVTPL 331
SEGLNKAVA+VGKVL FVKHE+V PL
Sbjct: 310 SEGLNKAVAIVGKVLLFVKHESVAPL 335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472891|ref|XP_002280284.2| PREDICTED: tetratricopeptide repeat protein 5 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/326 (78%), Positives = 293/326 (89%)
Query: 6 EDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRAT 65
E+++ A +AADDLY +++T+FPANP +K+S+LQ +SDLAL LL S+P EQR+ P QR T
Sbjct: 10 EELFGEARRAADDLYQLRDTYFPANPAEKISELQRKSDLALSLLDSLPLEQRRLPIQRRT 69
Query: 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125
YE+L+GKILDV P+YRK+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDL +AKNCF LA
Sbjct: 70 YEFLRGKILDVFPDYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLASAKNCFTLA 129
Query: 126 LSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
L KG NK+ILCQLSMLER MA GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL
Sbjct: 130 LGKGSNKEILCQLSMLERRMAPGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 189
Query: 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
TSFFVTG+WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA+
Sbjct: 190 TSFFVTGAWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAA 249
Query: 246 ALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATVDLL 305
ALKDP LNA EEVQ +V+LL+K+E+LLKG A+ KR A+LASS A L+ S+KR T+D+L
Sbjct: 250 ALKDPGLNAVEEVQKIVDLLNKLESLLKGQARAKRHAALASSRAADNLNPSYKRITIDIL 309
Query: 306 SEGLNKAVAVVGKVLFFVKHENVTPL 331
SEGLNKAVA+VGKVL FVKHE+V PL
Sbjct: 310 SEGLNKAVAIVGKVLLFVKHESVAPL 335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737733|emb|CBI26934.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/326 (78%), Positives = 293/326 (89%)
Query: 6 EDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRAT 65
E+++ A +AADDLY +++T+FPANP +K+S+LQ +SDLAL LL S+P EQR+ P QR T
Sbjct: 2 EELFGEARRAADDLYQLRDTYFPANPAEKISELQRKSDLALSLLDSLPLEQRRLPIQRRT 61
Query: 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125
YE+L+GKILDV P+YRK+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDL +AKNCF LA
Sbjct: 62 YEFLRGKILDVFPDYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLASAKNCFTLA 121
Query: 126 LSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
L KG NK+ILCQLSMLER MA GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL
Sbjct: 122 LGKGSNKEILCQLSMLERRMAPGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 181
Query: 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
TSFFVTG+WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA+
Sbjct: 182 TSFFVTGAWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAA 241
Query: 246 ALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATVDLL 305
ALKDP LNA EEVQ +V+LL+K+E+LLKG A+ KR A+LASS A L+ S+KR T+D+L
Sbjct: 242 ALKDPGLNAVEEVQKIVDLLNKLESLLKGQARAKRHAALASSRAADNLNPSYKRITIDIL 301
Query: 306 SEGLNKAVAVVGKVLFFVKHENVTPL 331
SEGLNKAVA+VGKVL FVKHE+V PL
Sbjct: 302 SEGLNKAVAIVGKVLLFVKHESVAPL 327
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108367|ref|XP_002314823.1| predicted protein [Populus trichocarpa] gi|222863863|gb|EEF00994.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/340 (75%), Positives = 286/340 (84%), Gaps = 39/340 (11%)
Query: 7 DIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATY 66
DIWA+ATKAADDLY +++T+FP NP DK+SKLQ++SDL+L LL S+P E RKSP QRATY
Sbjct: 27 DIWAKATKAADDLYILRDTYFPPNPLDKISKLQSQSDLSLNLLDSIPLEYRKSPVQRATY 86
Query: 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126
EYL+GK+LDVVPEY K+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDLP+AKNCFNLAL
Sbjct: 87 EYLRGKLLDVVPEYNKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLPSAKNCFNLAL 146
Query: 127 SKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY-------- 178
SK A+IVEESIQHAK+AITLDVKDGNSW+
Sbjct: 147 SK------------------------AQIVEESIQHAKDAITLDVKDGNSWFLTTYSTFC 182
Query: 179 -------NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231
NLGNACLTSFFVTG+WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN+Y
Sbjct: 183 NGMKIKDNLGNACLTSFFVTGAWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNRY 242
Query: 232 LENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVV 291
LENYERALSGFEA+ALKDPSLNATEEVQ MVNLLDK+ENLL+G A+TKR+ASLASSLA V
Sbjct: 243 LENYERALSGFEAAALKDPSLNATEEVQKMVNLLDKLENLLRGQARTKRLASLASSLAAV 302
Query: 292 KLSSSHKRATVDLLSEGLNKAVAVVGKVLFFVKHENVTPL 331
KL+SS+KRA+VD LSEGLN+AVA+VGKVLFFVK EN TPL
Sbjct: 303 KLNSSYKRASVDQLSEGLNRAVAIVGKVLFFVKQENATPL 342
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444587|ref|XP_003592571.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355481619|gb|AES62822.1| Tetratricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/327 (71%), Positives = 278/327 (85%)
Query: 5 EEDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRA 64
EE + +A K+ D+LY +++T+FP NPDD+ S LQ SDL L LL SVPPE+RKSPTQRA
Sbjct: 9 EEALLVKAAKSTDELYLLRDTYFPQNPDDRTSNLQQHSDLILTLLDSVPPEERKSPTQRA 68
Query: 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNL 124
+EYL+GK+LDV PEY+K+AEDHLSKAVKLNPSLADAWLCLG+CIWKKGDL AAKNC NL
Sbjct: 69 IFEYLRGKVLDVFPEYKKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSAAKNCLNL 128
Query: 125 ALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184
AL+KGPNKKILCQLSML+RSM+Q ++NQAE+V+ESIQHAKEAI LDVKDGNSWYNLGNA
Sbjct: 129 ALNKGPNKKILCQLSMLKRSMSQSADNQAELVDESIQHAKEAIALDVKDGNSWYNLGNAY 188
Query: 185 LTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244
+TSFFVTG WDH++L SLKAYQNAEKDE +KSNPD YFN A NKYLENYERALSGFEA
Sbjct: 189 VTSFFVTGGWDHTRLSHSLKAYQNAEKDEGIKSNPDFYFNSAIANKYLENYERALSGFEA 248
Query: 245 SALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATVDL 304
+A KDP LNA +EVQ +VNLLD ++NLL+ H + KR+A+LA+SLA V L ++ T+DL
Sbjct: 249 AASKDPGLNAADEVQKIVNLLDNVDNLLRVHVRAKRIAALAASLAAVNLKLPYRTVTMDL 308
Query: 305 LSEGLNKAVAVVGKVLFFVKHENVTPL 331
LSEGLN+ +AV GKVLFF++ E V PL
Sbjct: 309 LSEGLNRTLAVDGKVLFFIRSEGVAPL 335
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297596866|ref|NP_001043149.2| Os01g0506200 [Oryza sativa Japonica Group] gi|56201662|dbj|BAD73126.1| tetratricopeptide repeat domain 5-like protein [Oryza sativa Japonica Group] gi|215706440|dbj|BAG93296.1| unnamed protein product [Oryza sativa Japonica Group] gi|218188300|gb|EEC70727.1| hypothetical protein OsI_02115 [Oryza sativa Indica Group] gi|255673280|dbj|BAF05063.2| Os01g0506200 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/321 (67%), Positives = 271/321 (84%)
Query: 11 RATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLK 70
R AA++LY +++TFFP +P +K + L+ +D AL +L S+PPEQRK+P QRA YE+L+
Sbjct: 26 RTADAAEELYRLRDTFFPRDPVEKAAALRALADDALAVLDSLPPEQRKTPQQRAVYEFLR 85
Query: 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP 130
GKILDV P+Y K+AEDHLSKAVKLNPSL DAWLCLG+CIWKKGDL +A NCF+LALSKG
Sbjct: 86 GKILDVFPDYHKEAEDHLSKAVKLNPSLVDAWLCLGNCIWKKGDLDSAMNCFSLALSKGA 145
Query: 131 NKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFV 190
+KKILCQLSMLERSMAQGSE QA++VEESI+HAKEA+ LD++DGNSWYNLGNA LTSFFV
Sbjct: 146 DKKILCQLSMLERSMAQGSEGQAQLVEESIKHAKEAVMLDIRDGNSWYNLGNAYLTSFFV 205
Query: 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250
+GSWDH KL S+KAYQNAEKDE K NPDLY+NCAT +KYLENYERAL GFEA+ALKDP
Sbjct: 206 SGSWDHMKLHHSVKAYQNAEKDETTKCNPDLYYNCATADKYLENYERALRGFEAAALKDP 265
Query: 251 SLNATEEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKLSSSHKRATVDLLSEGLN 310
L A EVQ +++LLDK+++ +KG ++KR+AS SSL+ V + SSHK+AT+ +LSEGLN
Sbjct: 266 GLGADTEVQKIISLLDKLDSAMKGQLRSKRLASSVSSLSEVNIKSSHKKATIGILSEGLN 325
Query: 311 KAVAVVGKVLFFVKHENVTPL 331
K VAV+GKV+ ++H+N+ P+
Sbjct: 326 KTVAVLGKVILLIRHDNIAPM 346
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| UNIPROTKB|Q0P5H9 | 440 | TTC5 "Tetratricopeptide repeat | 0.830 | 0.625 | 0.395 | 1.2e-45 | |
| RGD|1311284 | 440 | Ttc5 "tetratricopeptide repeat | 0.809 | 0.609 | 0.396 | 2e-45 | |
| MGI|MGI:2683584 | 440 | Ttc5 "tetratricopeptide repeat | 0.785 | 0.590 | 0.399 | 9.6e-44 | |
| ZFIN|ZDB-GENE-050417-137 | 467 | ttc5 "tetratricopeptide repeat | 0.788 | 0.558 | 0.389 | 3.5e-43 | |
| UNIPROTKB|Q8N0Z6 | 440 | TTC5 "Tetratricopeptide repeat | 0.836 | 0.629 | 0.378 | 5.2e-42 | |
| UNIPROTKB|F1S8F7 | 440 | TTC5 "Uncharacterized protein" | 0.824 | 0.620 | 0.380 | 4.6e-41 | |
| UNIPROTKB|G4NAC6 | 923 | MGG_03196 "RCM-1" [Magnaporthe | 0.416 | 0.149 | 0.256 | 0.00082 |
| UNIPROTKB|Q0P5H9 TTC5 "Tetratricopeptide repeat protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 113/286 (39%), Positives = 160/286 (55%)
Query: 2 EKVEEDIWARATKAADDLYHVKETFFPANP-DDKVSKLQNESDLALRLLGSVPPEQRKSP 60
E+V+E + + + D LY +E +F + DD K Q+ + + L + E S
Sbjct: 7 EEVKE-VLQKLQELVDQLYSFRECYFETHSVDDAGRKQQDVREEMEKTLQQME-EVVGSV 64
Query: 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120
A L GK L+V P+Y AE+ LSKAVKL P L +AW LG WKKGD+ AA
Sbjct: 65 QGNAQVLMLTGKALNVTPDYSPKAEELLSKAVKLEPKLVEAWNQLGEVYWKKGDVAAAHT 124
Query: 121 CFNLALSKGPNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYN 179
CF+ AL+ NK L LSM+ R + S + + V +S++ AK A+ +D+ DG SWY
Sbjct: 125 CFSGALTHCKNKVSLQNLSMVLRQLRTDSGDEHSRHVMDSVRQAKLAVQMDILDGRSWYI 184
Query: 180 LGNACLTSFFVTGSWDHSKLLQ-SLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYER 237
LGNA L+ +F TG + K+ Q +L AY AEK D SNPDL+ N AT++KY ENY
Sbjct: 185 LGNAYLSLYFNTGQ--NPKISQQALSAYAQAEKVDRTASSNPDLHLNRATLHKYEENYGE 242
Query: 238 ALSGFEASALKDPSL-NATEEVQMMVNLLDKIENLL--KGHAKTKR 280
AL GF +A DP+ + Q +++ L ++ + L KG KTK+
Sbjct: 243 ALEGFSRAAALDPAWPEPWQREQQLLDFLTRLTSFLESKGKVKTKK 288
|
|
| RGD|1311284 Ttc5 "tetratricopeptide repeat domain 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 115/290 (39%), Positives = 163/290 (56%)
Query: 2 EKVEEDIWARATKAADDLYHVKETFFPANP-DD---KVSKLQNESDLALR----LLGSVP 53
E+ + + + + D LY ++++F + +D K +Q E + LR +LGSV
Sbjct: 6 EEEAKQVLQKLQELVDQLYCFRDSYFETHSVEDAGQKQQDVQEEMEKTLRQMEEVLGSVQ 65
Query: 54 PEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113
E A LKGK L+V P+Y +AE LSKAVKL P L +AW LG WKKG
Sbjct: 66 VE--------AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG 117
Query: 114 DLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVK 172
D+ AA CF+ AL+ NK L LSM+ R + S + + V +S++ AK A+ +DV
Sbjct: 118 DVAAAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 177
Query: 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQ-SLKAYQNAEK-DERMKSNPDLYFNCATVNK 230
DG SWY LGNA L+ +F TG + K+ Q +L AY AEK D + SNPDL+ N AT++K
Sbjct: 178 DGRSWYILGNAYLSLYFNTGQ--NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 235
Query: 231 YLENYERALSGFEASALKDPSLNATEE-VQMMVNLLDKIENLLKGHAKTK 279
Y E+Y AL GF +A DP+ ++ Q ++ L ++ NLL KTK
Sbjct: 236 YEESYGEALEGFSQAATLDPAWPEPQQREQQLLEFLSRLTNLLASKGKTK 285
|
|
| MGI|MGI:2683584 Ttc5 "tetratricopeptide repeat domain 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 107/268 (39%), Positives = 153/268 (57%)
Query: 17 DDLYHVKETFFPANP-DDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILD 75
D LY ++++F + +D K Q+ + + L + E S A LKGK L+
Sbjct: 21 DRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQME-EVLGSAQVEAQALMLKGKALN 79
Query: 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL 135
V P+Y +AE LSKAVKL P L +AW LG WKKGD+ +A CF+ AL+ NK L
Sbjct: 80 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVASAHTCFSGALTHCKNKVSL 139
Query: 136 CQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194
LSM+ R + S + + V +S++ AK A+ +DV DG SWY LGNA L+ +F TG
Sbjct: 140 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ- 198
Query: 195 DHSKLLQ-SLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252
+ K+ Q +L AY AEK D + SNPDL+ N AT++KY E+Y AL GF +A DP
Sbjct: 199 -NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPVW 257
Query: 253 NATEE-VQMMVNLLDKIENLLKGHAKTK 279
++ Q ++ L ++ +LL+ KTK
Sbjct: 258 PEPQQREQQLLEFLSRLTSLLESKGKTK 285
|
|
| ZFIN|ZDB-GENE-050417-137 ttc5 "tetratricopeptide repeat domain 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 106/272 (38%), Positives = 162/272 (59%)
Query: 17 DDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYL--KGKIL 74
DDLY ++ +F + + + QN D+A + ++ + K+ + + ++L +G+ L
Sbjct: 47 DDLYSFRDRYFETHSVEDAGRKQN--DVAQEMAKTLKRLEEKADLYKHSAQFLLLRGRCL 104
Query: 75 DVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKI 134
+V PE+ + AE+ LS+AVKL P L + W LG WKKGDL AAK CF AL + NK
Sbjct: 105 NVAPEFSQAAEECLSRAVKLEPGLVEGWNTLGEQYWKKGDLTAAKTCFTGALQQSKNKVS 164
Query: 135 LCQLSMLERSMA-QG-SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTG 192
L LSM+ R + +G ++ Q++ + ES+ A+ A+ LDV DG SWY LGNA ++ FF +G
Sbjct: 165 LRSLSMVLRQLPPEGDAQEQSKRILESVDLARHAVQLDVTDGTSWYILGNAYISMFFTSG 224
Query: 193 SWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLENYERALSGFEASALKDPS 251
+ Q+L AY AEK ++ S NPDL+FN AT+ +Y E + AL G+ +A DP+
Sbjct: 225 Q-NPQLSQQALSAYAQAEKIDKASSMNPDLHFNRATLFQYEEMFSSALGGYSRAAALDPA 283
Query: 252 L-NATEEVQMMVNLLDKIENLL--KGHAKTKR 280
NA E + ++N LD++ LL KG K +R
Sbjct: 284 WENAQEREKQLLNYLDQVTILLENKGKIKARR 315
|
|
| UNIPROTKB|Q8N0Z6 TTC5 "Tetratricopeptide repeat protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 108/285 (37%), Positives = 159/285 (55%)
Query: 2 EKVEEDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPT 61
E+ + I + + D LY ++ +F + + + Q + + E S
Sbjct: 6 EEEVKPILQKLQELVDQLYSFRDCYFETHSVEDAGRKQQDVQKEMEKTLQQMEEVVGSVQ 65
Query: 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121
+A L GK L+V P+Y AE+ LSKAVKL P L +AW LG WKKGD+ AA C
Sbjct: 66 GKAQVLMLTGKALNVTPDYSPKAEELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTC 125
Query: 122 FNLALSKGPNKKILCQLSMLERSMAQGSENQ-AEIVEESIQHAKEAITLDVKDGNSWYNL 180
F+ AL+ NK L LSM+ R + +E++ + V +S++ AK A+ +DV DG SWY L
Sbjct: 126 FSGALTHCRNKVSLQNLSMVLRQLRTDTEDEHSHHVMDSVRQAKLAVQMDVHDGRSWYIL 185
Query: 181 GNACLTSFFVTGSWDHSKLLQ-SLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERA 238
GN+ L+ +F TG + K+ Q +L AY AEK D + SNPDL+ N AT++KY E+Y A
Sbjct: 186 GNSYLSLYFSTGQ--NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEA 243
Query: 239 LSGFEASALKDPSL-NATEEVQMMVNLLDKIENLL--KGHAKTKR 280
L GF +A DP+ + Q ++ LD++ +LL KG KTK+
Sbjct: 244 LEGFSRAAALDPAWPEPRQREQQLLEFLDRLTSLLESKGKVKTKK 288
|
|
| UNIPROTKB|F1S8F7 TTC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 107/281 (38%), Positives = 155/281 (55%)
Query: 6 EDIWARATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRAT 65
+++ + + D LY +E +F + + + Q + + E S A
Sbjct: 10 KEVLQKLQELVDQLYTFRECYFETHSVEDAGRKQQDVRKEMEKTLQQMEEVVGSIQGNAQ 69
Query: 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125
L GK L+V P+Y AE+ LSKAVKL P L +AW LG WKKGD+ AA CF+ A
Sbjct: 70 VLMLTGKALNVTPDYSSKAEELLSKAVKLEPKLVEAWNQLGEVYWKKGDVAAAHTCFSGA 129
Query: 126 LSKGPNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184
L+ NK L LSM+ R + S + + V +S++ AK A+ +D+ DG SWY LGNA
Sbjct: 130 LTHCKNKVSLQNLSMVLRQLRTDSGDEHSRHVMDSVRQAKLAVQMDILDGRSWYILGNAY 189
Query: 185 LTSFFVTGSWDHSKLLQ-SLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERALSGF 242
L+ +F TG + K+ Q +L AY AEK D SNPDL+ N AT++KY ENY AL GF
Sbjct: 190 LSLYFNTGQ--NPKISQQALSAYAQAEKVDRTASSNPDLHLNRATLHKYEENYGEALEGF 247
Query: 243 EASALKDPSL-NATEEVQMMVNLLDKIENLL--KGHAKTKR 280
+A DP+ + Q +++ L+++ +LL KG KTK+
Sbjct: 248 FRAAALDPAWPEPRQREQQLLDFLNRLTSLLESKGKVKTKK 288
|
|
| UNIPROTKB|G4NAC6 MGG_03196 "RCM-1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 0.00082, P = 0.00082
Identities = 40/156 (25%), Positives = 68/156 (43%)
Query: 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLERSMAQGSENQAEIVEE 158
D W +G ++ DL AK + L P + K+L QL L + ++Q E
Sbjct: 224 DIWFQIGHVHEQQKDLDNAKAAYQRVLDGDPKHAKVLQQLGWLHHQQSSSFQSQ----ER 279
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE-KDERMKS 217
+I++ ++++ D D SWY LG C S K ++ +AYQ A +D R
Sbjct: 280 AIEYLEQSVAADNSDAQSWYLLGR-CYMS--------QQKYPKAYEAYQQAVYRDGR--- 327
Query: 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253
NP + + + + Y AL + + +P L+
Sbjct: 328 NPTFWCSIGVLYYQINQYRDALDAYSRAIRLNPYLS 363
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 331 315 0.00082 116 3 11 23 0.44 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 607 (65 KB)
Total size of DFA: 226 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.20u 0.14s 28.34t Elapsed: 00:00:01
Total cpu time: 28.21u 0.14s 28.35t Elapsed: 00:00:01
Start: Fri May 10 23:23:31 2013 End: Fri May 10 23:23:32 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 331 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
++A + KA++L+P A A+ LG +K G A + AL PN
Sbjct: 51 EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSM 140
+A ++ KA++L+P ADA+ L + +K G A + AL P N K L +
Sbjct: 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLD 170
+ + EE+++ ++A+ LD
Sbjct: 77 AYYKLGK--------YEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP-AAKNCFNLALSKGP 130
+A + KA++L+P A+A+ L K G A AL P
Sbjct: 20 DEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.001
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLERSMAQGSENQAEIVEE 158
+A L LG+ +K GD A + AL P N L+ + EE
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--------GKYEE 52
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNACL 185
+++ ++A+ LD + ++YNLG A
Sbjct: 53 ALEDYEKALELDPDNAKAYYNLGLAYY 79
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.86 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.85 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.85 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.82 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.77 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.76 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.74 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.71 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.66 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.66 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.64 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.62 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.61 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.61 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.55 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.54 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.51 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.44 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.42 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.39 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.37 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.31 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.31 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.29 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.28 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.27 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.25 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.22 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.22 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.2 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.19 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.15 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.14 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.14 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.09 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.09 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.08 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.05 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.04 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.02 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.02 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.01 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.99 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.96 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.9 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.89 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.83 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.8 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.78 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.77 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.76 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.75 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.75 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.7 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.69 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.65 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.63 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.63 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.61 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.6 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.59 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.56 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.56 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.47 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.44 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.43 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.41 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.31 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.15 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.14 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.12 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.12 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.08 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.08 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.98 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.86 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.83 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.79 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.79 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.74 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.72 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.7 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.68 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.66 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.66 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.63 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.63 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.57 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.55 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.44 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.39 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.33 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.3 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.3 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.29 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.28 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.25 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.22 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.21 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.2 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.18 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.16 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 97.15 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.04 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.0 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.0 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.99 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.98 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.91 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.82 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.81 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.81 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.71 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.69 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.57 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.56 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.46 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.45 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.44 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.43 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.39 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.39 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.3 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.28 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.22 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.1 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.07 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 96.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.99 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.95 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.93 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.91 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.9 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.75 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 95.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.7 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.67 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.56 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.54 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.53 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.53 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.49 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.43 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.34 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 95.34 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.27 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.26 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.24 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.16 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.08 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.95 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.88 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 94.86 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.8 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.69 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.65 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.56 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.42 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.42 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.37 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 93.95 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.8 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.78 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.75 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.73 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.51 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 93.48 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.44 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.21 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.14 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 93.1 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.1 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.97 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 92.89 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.77 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 92.64 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.62 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.6 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.51 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 92.51 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 92.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 92.32 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.28 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 92.28 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 92.23 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 92.15 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 91.84 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.79 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.77 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.73 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 91.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.52 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 90.71 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.46 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 89.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 89.66 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 89.17 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 89.02 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 88.69 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.12 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.48 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.91 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.02 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 85.79 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 85.24 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.19 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 85.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.04 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 84.66 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 84.39 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 83.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 83.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.77 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 80.72 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 80.49 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.46 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 80.42 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=211.49 Aligned_cols=203 Identities=19% Similarity=0.200 Sum_probs=125.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+-+|.++|.++...|+. ..||.+|.++++++|...++|++||.+|-..+.|+.|+.+|.+++.+.|.+ .++.++|.
T Consensus 216 ~fAiawsnLg~~f~~~Gei-~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 216 CFAIAWSNLGCVFNAQGEI-WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLAC 294 (966)
T ss_pred ceeeeehhcchHHhhcchH-HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEE
Confidence 4455677777777777774 777777777777777777777777777777777777777777777777766 66666666
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+|...|+ .+-|+.+|++++++.|+.+.++.+||+++... |+..+|..+|.+++.++ |.+++
T Consensus 295 iYyeqG~--------ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~---------G~V~ea~~cYnkaL~l~--p~had 355 (966)
T KOG4626|consen 295 IYYEQGL--------LDLAIDTYKRALELQPNFPDAYNNLANALKDK---------GSVTEAVDCYNKALRLC--PNHAD 355 (966)
T ss_pred EEecccc--------HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc---------cchHHHHHHHHHHHHhC--CccHH
Confidence 6665553 55555555555555555555555555555555 55555555555555544 55555
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+.+|+|+++..+|.+++|...|.+++...|....+ .+++.++.+.|++++|+..|.+|+++.|.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 55555555555555555555555555555555555 55555555555555555555555555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=206.11 Aligned_cols=227 Identities=16% Similarity=0.151 Sum_probs=187.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
+..+-.++..+++... -.+....+|+++|.+|...+.| +.|+.+|.+++.+.|+.+.++-++|.+|+.+|+.+-|
T Consensus 231 ~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~-d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIF-DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred cchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcc-hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHH
Confidence 3445555555555443 3456677888999999999998 8899999999999999888888899999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|++++++.|.. .++.++|.++..+| +..+|+.+|.+++.+.|+++++.++||++|... |
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G--------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~---------~ 368 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKG--------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ---------G 368 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhcc--------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---------c
Confidence 99999999998888 88888888888776 488888888888888888888888888888888 8
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
.+++|...|.+++... |..+.++.|+|.+|..+|++++|+.+|+.++++.|...++ .++|..+..+|+...|+..|.
T Consensus 369 ~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 369 KIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred cchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 8888888888888844 8888888888888888888888888888888888888887 888888888888888888888
Q ss_pred hhhhHHHHHhhcc
Q 020060 277 KTKRVASLASSLA 289 (331)
Q Consensus 277 ~a~~l~~~~~~~~ 289 (331)
+|..++|.+..-.
T Consensus 447 rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 447 RAIQINPTFAEAH 459 (966)
T ss_pred HHHhcCcHHHHHH
Confidence 8888777655544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=182.71 Aligned_cols=219 Identities=21% Similarity=0.298 Sum_probs=175.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-------------------------
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------------------------- 94 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------------------------- 94 (331)
-...+|+.++.+++. .......++.++|..|+.+++| ++|..+|+.+-+.
T Consensus 333 y~~~~A~~~~~klp~----h~~nt~wvl~q~GrayFEl~~Y-~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS----HHYNTGWVLSQLGRAYFELIEY-DQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHH----hcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 445677777777554 3344557788888888888888 8888888765543
Q ss_pred ---------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 95 ---------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 95 ---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
+|+.|+.|..+|.||..+++++.|+++|++|++++|.. .++..+|.=+... ..++.|..+|+
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~--------ee~d~a~~~fr 479 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT--------EEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh--------HHHHhHHHHHH
Confidence 45668888888888888888888888888888888877 6666666655543 45888888888
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 165 EAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 165 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
.|+..+|.+..+|+.+|.+|... ++++.|...|++|+..+ |.+......+|.++.++|+.++|+.+|++
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kq---------ek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQ---------EKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred hhhcCCchhhHHHHhhhhheecc---------chhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 88888888888888888888888 88888888888888866 88888888888888888888888888888
Q ss_pred HHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 245 SALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 245 al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
|+.++|.++.. ...+.++..++++.+|+..+++-+.+.
T Consensus 549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 88888888887 888888888888888887766655443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=180.82 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=198.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..|..+|++|..++++ +.|+.+|++|+.++|.++.+|..+|.=+....+++.|..+|++|+.++|.+ .+|+.
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh-~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDH-DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHH-HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 3457788999999999999996 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.+|.+.+ +++.|.-.|++|++++|.+......+|.++..+ |+.++|+..|++|+.++ |.
T Consensus 495 lG~vy~Kqe--------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~---------k~~d~AL~~~~~A~~ld--~k 555 (638)
T KOG1126|consen 495 LGTVYLKQE--------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL---------KRKDKALQLYEKAIHLD--PK 555 (638)
T ss_pred hhhheeccc--------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh---------hhhhHHHHHHHHHHhcC--CC
Confidence 999999886 599999999999999999999999999999999 99999999999999966 99
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~ 287 (331)
++-..+..|.+++.++++++|+..+++.-++-|+.... ..+|.++..+|+.+.|++.|.=|.++++.-..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999998 99999999999999999999988887765444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=189.51 Aligned_cols=203 Identities=15% Similarity=0.179 Sum_probs=158.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+..+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++ ..+..+|.
T Consensus 363 ~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDP-DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 3445666667777777775 777777777777777777777777777777777777777777777777776 66667777
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++..+| ++++|+..+++++...|+++.++..+|.++... |++++|+..|++++... |.+..
T Consensus 442 ~~~~~g--------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~Al~l~--p~~~~ 502 (615)
T TIGR00990 442 TQYKEG--------SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ---------NKFDEAIEKFDTAIELE--KETKP 502 (615)
T ss_pred HHHHCC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcC--Ccccc
Confidence 777665 488888888888888888888888899988888 99999999999999854 65433
Q ss_pred H------HhhHHHHH-HHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 221 L------YFNCATVN-KYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 221 ~------~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
. +.+.+.++ ...|++++|..++++++.++|++... ..++.++..+|++++|++.|.++.++.+.
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 2 23333334 44799999999999999999999887 99999999999999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-22 Score=185.69 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=194.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+++|+..++....... ..+..+.++..+|.++...|++ ++|+..|++++.++|....+|..+|.++...|++++|+
T Consensus 308 ~~y~~A~~~~~~al~~~~-~~~~~a~a~~~lg~~~~~~g~~-~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK-LGEKEAIALNLRGTFKCLKGKH-LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776553211 2356677899999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+|+++++.+|++ .+++.+|.++..+| ++++|+.+|+++++++|++..++..+|.++... |+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~---------g~ 448 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKG--------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE---------GS 448 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC---------CC
Confidence 9999999999998 89999999999887 599999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-------HHHH-HHHHHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-------EEVQ-MMVNLLDKIEN 270 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~l~-~~~~~l~~~~~ 270 (331)
+++|+..|+++++.. |.++.++..+|.++..+|++++|+..|++++.++|++... ...+ ..+...+++++
T Consensus 449 ~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 449 IASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999955 9999999999999999999999999999999999875332 1222 23334689999
Q ss_pred HHHhhhhhhhHHH
Q 020060 271 LLKGHAKTKRVAS 283 (331)
Q Consensus 271 a~~~~~~a~~l~~ 283 (331)
|...+.++..+.+
T Consensus 527 A~~~~~kAl~l~p 539 (615)
T TIGR00990 527 AENLCEKALIIDP 539 (615)
T ss_pred HHHHHHHHHhcCC
Confidence 9999888876643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=162.18 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=166.2
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
...+|+.|...++ +++|+.+|++|++++|....+|..+|.=|..+++...|+..|++|++++|.+ .+|+.+|++|--+
T Consensus 333 CCiIaNYYSlr~e-HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 333 CCIIANYYSLRSE-HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeeehhHHHHHHh-HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 3344666777777 4999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
+ ...-|+-+|++|++.-|+++..|..||.||..+ ++.++|+.+|.+++..+ ..+..++..+
T Consensus 412 ~--------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl---------~~~~eAiKCykrai~~~--dte~~~l~~L 472 (559)
T KOG1155|consen 412 K--------MHFYALYYFQKALELKPNDSRLWVALGECYEKL---------NRLEEAIKCYKRAILLG--DTEGSALVRL 472 (559)
T ss_pred c--------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhcc--ccchHHHHHH
Confidence 6 488999999999999999999999999999999 99999999999999854 6677999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc-------CCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 226 ATVNKYLENYERALSGFEASALK-------DPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
|..|..+++..+|..+|++.++. +|....+ ..++.-+...+++++|..
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 99999999999999999999983 4444444 777777888888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=177.67 Aligned_cols=209 Identities=12% Similarity=0.037 Sum_probs=139.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.++..+|.++...|++ ++|+..|++++.++|+++.++..+|.++...|++++|+..+++++...|++ ..+..++
T Consensus 108 ~~~~a~~~la~~l~~~g~~-~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~- 185 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQY-ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL- 185 (656)
T ss_pred CChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-
Confidence 3344555555555555554 555555555555555555555555555555555555555555555555544 2221111
Q ss_pred HHHHhccCch---------------------------hHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 141 LERSMAQGSE---------------------------NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 141 ~~~~~g~~~~---------------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
.+...|+... ...+++++|+..++++++.+|+++.++..+|.++...
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~------ 259 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS------ 259 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------
Confidence 1111111000 0124577788888888888888888888888888887
Q ss_pred CChhhHHH----HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHH
Q 020060 194 WDHSKLLQ----SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 194 ~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~ 268 (331)
|++++ |+..|++++... |+++.++.++|.++...|++++|+.++++++.++|++... ..++.++...|++
T Consensus 260 ---G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 260 ---GRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred ---CCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 88775 788888888854 8888888888888888888888888888888888888877 8888888888888
Q ss_pred HHHHHhhhhhhhHHH
Q 020060 269 ENLLKGHAKTKRVAS 283 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~ 283 (331)
++|+..+.++....+
T Consensus 335 ~eA~~~l~~al~~~P 349 (656)
T PRK15174 335 TAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHHHHHhCc
Confidence 888887777765533
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=148.11 Aligned_cols=201 Identities=17% Similarity=0.143 Sum_probs=179.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+....+..++.+|..+...|++ ++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+ ..+..
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 104 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDL-EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3445678899999999999998 999999999999999999999999999999999999999999999999988 88889
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLD--VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
+|.++...| ++++|+..+++++... +.....+..+|.++... |++++|...+.+++...
T Consensus 105 ~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~-- 165 (234)
T TIGR02521 105 YGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA---------GDFDKAEKYLTRALQID-- 165 (234)
T ss_pred HHHHHHHcc--------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--
Confidence 999999776 5999999999999854 45667889999999988 99999999999999955
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
|.++..+..+|.++...|++++|..++++++...|.+... ...+.+....|+..++........
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877766 777788888888888876555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=176.52 Aligned_cols=220 Identities=14% Similarity=0.053 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..++.+.. .++. ...++.+|.++...|++ ++|+.+|+++++.+|.....+..++......|++++|+
T Consensus 523 Gr~eeAi~~~rka~~----~~p~-~~a~~~la~all~~Gd~-~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 523 EDYATALAAWQKISL----HDMS-NEDLLAAANTAQAAGNG-AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred CCHHHHHHHHHHHhc----cCCC-cHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 446666777665543 1122 23467889999999997 99999999999999998888888887777889999999
Q ss_pred HHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 120 ~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
..|+++++++|+...+.++|.++..+| ++++|+..+++++.++|+++.++.++|.++... |++
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG--------~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~---------G~~ 659 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRH--------NVPAAVSDLRAALELEPNNSNYQAALGYALWDS---------GDI 659 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCH
Confidence 999999999997788899999999887 599999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
++|+..|+++++.. |+++.+++++|.++..+|++++|+.+|++++.++|++... ...+.+.....++..+.+.+.++
T Consensus 660 eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 660 AQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999955 9999999999999999999999999999999999999887 89999999999999999888888
Q ss_pred hhHHHH
Q 020060 279 KRVASL 284 (331)
Q Consensus 279 ~~l~~~ 284 (331)
..+.+.
T Consensus 738 ~~~~~~ 743 (987)
T PRK09782 738 WTFSFD 743 (987)
T ss_pred hhcCcc
Confidence 776543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=155.21 Aligned_cols=211 Identities=16% Similarity=0.163 Sum_probs=175.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..+-..|+-++..|.| ++||.+|..||.+.|+.+..|.+++-||...|+|++-++...++++++|+. .++++.+.
T Consensus 113 k~A~~lK~~GN~~f~~kkY-~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKY-DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHhhhhhhhhcccH-HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4466788899999999999 999999999999999999999999999999999999999999999999999 88888877
Q ss_pred HHHHhccCchh---------------------------------------------------------------------
Q 020060 141 LERSMAQGSEN--------------------------------------------------------------------- 151 (331)
Q Consensus 141 ~~~~~g~~~~~--------------------------------------------------------------------- 151 (331)
++-.+|...+.
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 77777654332
Q ss_pred --------------------------------------------------------------------------------
Q 020060 152 -------------------------------------------------------------------------------- 151 (331)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (331)
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence
Q ss_pred --------------------HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 152 --------------------QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 152 --------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+.++.++-...|.+|..++|+++.+|+..|.+++-+ +++++|+.-|++++.
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL---------~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL---------QQYEEAIADFQKAIS 422 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---------HHHHHHHHHHHHHhh
Confidence 334456666777777778888888888888888877 888888888888888
Q ss_pred chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 212 DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
++ |.+.-.+..++.+.+++++++++...|+.+.+..|+.+.. ...+.++...++++.|++.|.+|.+|.+.
T Consensus 423 L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 423 LD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred cC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 55 8888888888888888888888888888888888888777 77788888888888888888888887765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=152.17 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=182.6
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
.|..+|..|....+- .+-...|.+|..++|+++++|+..|.+++-++++++|+.-|++++.++|++ -++..++.+.++
T Consensus 362 lyI~~a~~y~d~~~~-~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 362 LYIKRAAAYADENQS-EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHHhhhhcc-HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 477889999999995 999999999999999999999999999999999999999999999999999 888899999887
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC------C
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS------N 218 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~ 218 (331)
.+ ++.+++..|+++.+..|+.++++...|.++... ++|++|++.|.+++.+. |. +
T Consensus 441 ~~--------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq---------qqFd~A~k~YD~ai~LE--~~~~~~~v~ 501 (606)
T KOG0547|consen 441 QH--------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ---------QQFDKAVKQYDKAIELE--PREHLIIVN 501 (606)
T ss_pred HH--------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH---------HhHHHHHHHHHHHHhhc--ccccccccc
Confidence 75 699999999999999999999999999999976 99999999999999965 77 5
Q ss_pred hhHHhhHHHHH-HHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHh
Q 020060 219 PDLYFNCATVN-KYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 219 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~ 286 (331)
+..+.+.|.+. ...+++.+|+..+++|+++||....+ ..++.+..+.|++++|++.|+++..+.....
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 65566655543 35699999999999999999999998 9999999999999999999999988765433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=157.18 Aligned_cols=205 Identities=20% Similarity=0.242 Sum_probs=186.4
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
|..+..|+..|..|...|++ .+|..+|.++..++|..+.+|...|..+...|..++|+.+|.+|-++.|.. .....+|
T Consensus 309 P~~a~sW~aVg~YYl~i~k~-seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKY-SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCc-HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 46678899999999999998 999999999999999999999999999999999999999999999999988 6777788
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch--hcCC
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE--RMKS 217 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~ 217 (331)
.-+..++ +++-|.++|.+|+.+.|.+|-+...+|.+.+.. +.|.+|..+|+.++..- ..+.
T Consensus 388 mey~~t~--------n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~---------~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 388 MEYMRTN--------NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY---------EEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHHHHhc--------cHHHHHHHHHHHHhcCCCcchhhhhhhheeehH---------hhhHHHHHHHHHHHHHhhhcccc
Confidence 8888665 699999999999999999999999999999988 99999999999999411 0111
Q ss_pred C---hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 218 N---PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 218 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
. ...+.|+|.++.+++.+++|+.+|++++.+.|.+... ..+|.++..+|+++.|+..|.||+-+.+
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 1 2338999999999999999999999999999999998 9999999999999999999999997755
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=155.67 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=155.6
Q ss_pred HHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHH
Q 020060 43 DLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCF 122 (331)
Q Consensus 43 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (331)
+.++..+.++.......+...+..|+.+|.++...|++ ++|+..|+++++++|+++.+|..+|.++...|++++|+..|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~-~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR-ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444333222236677889999999999999997 99999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 123 NLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 123 ~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
+++++++|++ .++.++|.++...| ++++|+..++++++.+|+++.....+ .+.... +++++
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g--------~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~---------~~~~~ 183 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGG--------RYELAQDDLLAFYQDDPNDPYRALWL-YLAESK---------LDPKQ 183 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHcc---------CCHHH
Confidence 9999999999 89999999999886 59999999999999999987321111 112223 67888
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH-------hcCCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA-------LKDPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
|+..+.+++.. .++..|. .+.++..+|+..++ ..+..+. ++.|....+ ..+|.++..+|++++|+.
T Consensus 184 A~~~l~~~~~~----~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 184 AKENLKQRYEK----LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHhh----CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888776642 1222222 34555555554333 1222222 334444445 677777777777777777
Q ss_pred hhhhhhhHH
Q 020060 274 GHAKTKRVA 282 (331)
Q Consensus 274 ~~~~a~~l~ 282 (331)
.|.+|..++
T Consensus 258 ~~~~Al~~~ 266 (296)
T PRK11189 258 LFKLALANN 266 (296)
T ss_pred HHHHHHHhC
Confidence 777776554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-20 Score=158.98 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=182.6
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
+..|..++..|+. .+|.-+|+.++..+|.++++|..||.++...++-..|+..++++++++|++ .++..||..|...|
T Consensus 289 f~eG~~lm~nG~L-~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDL-SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 4678999999995 999999999999999999999999999999999999999999999999999 89999999888766
Q ss_pred cCchh---------------------------------HHHHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHhhhhhc
Q 020060 147 QGSEN---------------------------------QAEIVEESIQHAKEAITLDV--KDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 147 ~~~~~---------------------------------~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~ 191 (331)
....+ ....+..-.+.|.++....| .+++++..||.+|...
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls---- 443 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS---- 443 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc----
Confidence 42211 12235556667777777777 6888999999999988
Q ss_pred CCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHH
Q 020060 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIEN 270 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~ 270 (331)
|+|++|+.+|+.|+... |.|...|+.||..+....+..+|+..|.+|+++.|..... .++|...+.+|.+.+
T Consensus 444 -----~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 444 -----GEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred -----hHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999999965 9999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHhhhhhhhHHHH
Q 020060 271 LLKGHAKTKRVASL 284 (331)
Q Consensus 271 a~~~~~~a~~l~~~ 284 (331)
|++.+..|+.+++.
T Consensus 517 A~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 517 AVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=149.87 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=176.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH----------------------------------HHHHHHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA----------------------------------DAWLCLGSCI 109 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~lg~~~ 109 (331)
..+-...|.+.....+| ++|+..|+...+.+|-.. +...-+|..|
T Consensus 262 ~~i~~~~A~~~y~~rDf-D~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYY 340 (559)
T KOG1155|consen 262 MYIKTQIAAASYNQRDF-DQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYY 340 (559)
T ss_pred HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHH
Confidence 34455677888888897 999999999998888421 1223346677
Q ss_pred HHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
.-.++.++|+.+|+++++++|.. .+|..+|.-+..+. +...|+..|++|++++|.+-.+|+.||++|..+
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK--------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim- 411 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK--------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM- 411 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc--------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-
Confidence 78889999999999999999999 99999999999774 699999999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
+-..=|+-+|++|+... |.|+..|..+|.||.++++.++|+++|.+++.....+..+ ..+|.++..+++
T Consensus 412 --------~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 412 --------KMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred --------cchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 89999999999999965 9999999999999999999999999999999999888888 999999999999
Q ss_pred HHHHHHhhhhhhhHH
Q 020060 268 IENLLKGHAKTKRVA 282 (331)
Q Consensus 268 ~~~a~~~~~~a~~l~ 282 (331)
..+|...|.+.....
T Consensus 482 ~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888755
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-19 Score=164.33 Aligned_cols=205 Identities=13% Similarity=-0.002 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcc---------cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVV---------PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIW 110 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 110 (331)
..+++|+..+++... ..+..+..+..+|.++... +++ ++|+..++++++++|+++.++..+|.++.
T Consensus 275 ~~~~~A~~~~~~Al~----ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~-~~A~~~~~~Al~ldP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVN----MSPNSIAPYCALAECYLSMAQMGIFDKQNAM-IKAKEHAIKATELDHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHcCCcccchHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666666666554 2334455666667655432 345 78888888888888888888888888888
Q ss_pred HhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhh
Q 020060 111 KKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFF 189 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 189 (331)
..|++++|+.+|+++++++|++ .+++.+|.++...| ++++|+..++++++++|.++..+..++.++...
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~-- 419 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG--------QLEEALQTINECLKLDPTRAAAGITKLWITYYH-- 419 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--
Confidence 8888888888888888888888 77888888888776 488888888888888888877766666666666
Q ss_pred hcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
|++++|+..+++++... .|+++..+.++|.++..+|++++|...+.+.....|..... ..++..+...|+
T Consensus 420 -------g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 420 -------TGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred -------cCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 78888888888887631 36777788888888888888888888888877777776665 666666666664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=167.92 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=144.6
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHH----HHHHHHHHHhcCCCCCchhH
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVE----ESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~----~A~~~~~~al~~~p~~~~~~ 177 (331)
..++.++...|++++|+..|+++++..|++ .++..+|.++...|. ++ +|+..++++++.+|+++.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~--------~~eA~~~A~~~~~~Al~l~P~~~~a~ 287 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR--------SREAKLQAAEHWRHALQFNSDNVRIV 287 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------chhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 334667777888888888888888888887 778889999988874 55 48999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-H
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-E 256 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~ 256 (331)
..+|.++... |++++|+..+++++... |+++.++.++|.++...|++++|+..|++++..+|++... .
T Consensus 288 ~~lg~~l~~~---------g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 288 TLYADALIRT---------GQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred HHHHHHHHHC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999 99999999999999955 9999999999999999999999999999999999998766 6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 257 EVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++.++...|++++|++.|.++.+..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 6788999999999999999998877554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=163.53 Aligned_cols=197 Identities=16% Similarity=0.102 Sum_probs=172.5
Q ss_pred hHHHHHhhhhhhc---ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh---------CChhHHHHHHHHHHhcCCC
Q 020060 64 ATYEYLKGKILDV---VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK---------GDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 64 ~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~ 131 (331)
+..++..|..... .+++ ++|+.+|+++++++|+++.+|..+|.+|... +++++|+..++++++++|+
T Consensus 258 a~~~~lrg~~~~~~~~~~~~-~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSL-QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHhHHHHHccCHHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 3446667764433 3454 7999999999999999999999999988744 3489999999999999999
Q ss_pred h-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 132 K-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 132 ~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+ .++..+|.++...| ++++|+..++++++++|+++.+++.+|.++... |++++|+..+++++
T Consensus 337 ~~~a~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~---------G~~~eAi~~~~~Al 399 (553)
T PRK12370 337 NPQALGLLGLINTIHS--------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMA---------GQLEEALQTINECL 399 (553)
T ss_pred CHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHH
Confidence 9 88999999999776 599999999999999999999999999999999 99999999999999
Q ss_pred hchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC-CCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 211 KDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD-PSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+.+ |.++..++.++.+++..|++++|+..+++++... |+++.. ..++.++..+|++++|...+.+...
T Consensus 400 ~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 400 KLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred hcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 966 9998887778888888999999999999999875 777776 8899999999999999988766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=134.76 Aligned_cols=196 Identities=18% Similarity=0.136 Sum_probs=174.5
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+....+.+...+|.-|+..|++ ..|..-++++++.+|+...+|..+|.+|...|+.+.|-+.|++++.++|++ +++.+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~-~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 4456778888999999999997 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITL--DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
.|..++..| ++++|...|++|+.. .+..+.+|-++|.|.+.. |+++.|.++|++++..+
T Consensus 109 YG~FLC~qg--------~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~---------gq~~~A~~~l~raL~~d-- 169 (250)
T COG3063 109 YGAFLCAQG--------RPEEAMQQFERALADPAYGEPSDTLENLGLCALKA---------GQFDQAEEYLKRALELD-- 169 (250)
T ss_pred hhHHHHhCC--------ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc---------CCchhHHHHHHHHHHhC--
Confidence 999999887 599999999999973 456678999999999999 99999999999999965
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHh
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQ-MMVNLLDKIENLLKG 274 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~-~~~~~l~~~~~a~~~ 274 (331)
|+++.....++..++..|+|..|..++++.....+-......++ ++-..+|+...+.+.
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999988877544444444 566667776666544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-19 Score=156.23 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=189.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+++|+..++.+.......+......+..+|.++...|++ ++|+..|.++++..|....++..++.++...|++++|+
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL-DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHH
Confidence 45566666666554321112223446788899999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 120 NCFNLALSKGPNK------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 120 ~~~~~al~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
..+.++++..|.+ ..+..+|.++...| ++++|+.+++++++.+|++..++..+|.++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 227 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARG--------DLDAARALLKKALAADPQCVRASILLGDLALAQ------ 227 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC------
Confidence 9999999888764 24456777777665 599999999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCC-hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSN-PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
|++++|+..+++++... |.+ ..++..++.++...|++++|...+++++...|+......++.++...|++++|.
T Consensus 228 ---g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 228 ---GDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred ---CCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999743 655 466889999999999999999999999999998755588999999999999999
Q ss_pred HhhhhhhhHHHHH
Q 020060 273 KGHAKTKRVASLA 285 (331)
Q Consensus 273 ~~~~~a~~l~~~~ 285 (331)
..+.++.+..|..
T Consensus 303 ~~l~~~l~~~P~~ 315 (389)
T PRK11788 303 ALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHhCcCH
Confidence 9999888775543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=167.20 Aligned_cols=197 Identities=11% Similarity=0.007 Sum_probs=161.4
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
...+|.++...|++ ++|+.+|++++...|.. ..+..+|.++...|++++|+.+|+++++..|.. .....++......
T Consensus 512 ~L~lA~al~~~Gr~-eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDY-ATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 44455555666775 77777777766554443 345666777777777777777777777777666 4444444444444
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
| ++++|+..++++++.+|+ +.++.++|.++... |++++|+..|++++... |+++.++.++
T Consensus 590 G--------r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l---------G~~deA~~~l~~AL~l~--Pd~~~a~~nL 649 (987)
T PRK09782 590 G--------QPELALNDLTRSLNIAPS-ANAYVARATIYRQR---------HNVPAAVSDLRAALELE--PNNSNYQAAL 649 (987)
T ss_pred C--------CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 4 699999999999999996 89999999999999 99999999999999965 9999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
|.++...|++++|+..|+++++.+|+++.. .+++.++..+|++++|+..+.++..+.+..
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999998 999999999999999999999999877643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=170.09 Aligned_cols=218 Identities=17% Similarity=0.139 Sum_probs=132.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
++.++|+..+..... ..+.....+..++.++...|++ ++|+..++......|..+..+..+|.++...|++++|+
T Consensus 649 ~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 649 KNYAKAITSLKRALE----LKPDNTEAQIGLAQLLLAAKRT-ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 445555555554432 2223344555666666666665 66666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 120 ~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
..|++++...|++..+..++.++...| ++++|+..++++++..|+++.+++.+|.++... |++
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------g~~ 786 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASG--------NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ---------KDY 786 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------cCH
Confidence 666666666666555555666666554 366666666666666666666666666666655 666
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
++|+..|+++++.. |.++.++.++|.++...|+ .+|+.++++++...|+++.. ..++.++...|++++|++.+.++
T Consensus 787 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 787 DKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666533 6666666666666666666 55666666666666666555 55666666666666666666666
Q ss_pred hhHH
Q 020060 279 KRVA 282 (331)
Q Consensus 279 ~~l~ 282 (331)
.++.
T Consensus 864 ~~~~ 867 (899)
T TIGR02917 864 VNIA 867 (899)
T ss_pred HhhC
Confidence 5543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=168.82 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=158.2
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..+..+|.++...|++ ++|+.+|.++++.+|++..++..+|.++...|++++|+..|++++...|.+ .++..++.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDL-AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCcHHHHHHHHHHHhCCCH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4466788899999999997 999999999999999999999999999999999999999999999999888 77888888
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++++|+..+.+++..+|.+...+..++.++... |++++|+..+++++... |.++.
T Consensus 542 ~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~ 602 (899)
T TIGR02917 542 LYLRTG--------NEEEAVAWLEKAAELNPQEIEPALALAQYYLGK---------GQLKKALAILNEAADAA--PDSPE 602 (899)
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC---------CCHHHHHHHHHHHHHcC--CCCHH
Confidence 888766 477777777777777777777777777777766 77777777777777633 77777
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.|..+|.++...|++++|+..|++++..+|++... ..++.++...|++++|+..+.++..+
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777776666 67777777777777777766666544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=170.72 Aligned_cols=195 Identities=16% Similarity=0.098 Sum_probs=171.4
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H--HH----------
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K--IL---------- 135 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~---------- 135 (331)
.+|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++ . .|
T Consensus 274 ~~G~~~~~~g~~-~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQG-GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 568889999998 999999999999999999999999999999999999999999999999976 2 11
Q ss_pred --hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 136 --CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 136 --~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
...|.++...| ++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+++++..
T Consensus 353 ~~~~~g~~~~~~g--------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~---------g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 353 LLIQQGDAALKAN--------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMAR---------KDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhC
Confidence 23455666555 599999999999999999999999999999998 99999999999999955
Q ss_pred hcCCChhHHhhHHH------------------------------------------HHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 214 RMKSNPDLYFNCAT------------------------------------------VNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 214 ~~~~~~~~~~~la~------------------------------------------~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|.+..++..++. ++...|++++|+..|+++++++|+
T Consensus 416 --p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~ 493 (1157)
T PRK11447 416 --PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG 493 (1157)
T ss_pred --CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888776655444 445679999999999999999999
Q ss_pred CcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 252 LNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 252 ~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++.. ..++.++...|++++|+..+.++.++.+
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9988 9999999999999999999888876543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=132.71 Aligned_cols=160 Identities=15% Similarity=0.133 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
..+...||.-|+..|++..|...++++++.+|++ .+|..++.+|..+|+ .+.|-+.|++|+.++|++++++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcCCCccchh
Confidence 4678899999999999999999999999999999 999999999999984 9999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-H
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-E 256 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~ 256 (331)
++.|..+-.. |++++|...|++++....-+..+..+-|+|.|..++|+++.|..+|++++..+|+++.. .
T Consensus 107 NNYG~FLC~q---------g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 107 NNYGAFLCAQ---------GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred hhhhHHHHhC---------CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 9999999988 99999999999999865556677889999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020060 257 EVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~ 275 (331)
.++..+...|++..|...+
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 178 ELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHhcccchHHHHHH
Confidence 9999999999998887443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-18 Score=151.11 Aligned_cols=219 Identities=15% Similarity=0.063 Sum_probs=184.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCCh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDL 115 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 115 (331)
+.+++|+..+.+... ..+....+++.+|.++...|++ ++|+..+++++...+.. ..++..+|.+|...|++
T Consensus 49 ~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 49 EQPDKAIDLFIEMLK----VDPETVELHLALGNLFRRRGEV-DRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred CChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHcCcH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 444556666666554 2234567889999999999998 99999999998864332 35789999999999999
Q ss_pred hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch-----hHHHHHHHHHhhhh
Q 020060 116 PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN-----SWYNLGNACLTSFF 189 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~ 189 (331)
++|+.+|.++++..|.+ .++..++.++...| ++++|+..++++++..|.+.. .+..+|.++...
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 193 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR-- 193 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC--
Confidence 99999999999988877 78888999998775 699999999999998876543 456788888888
Q ss_pred hcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH-H-HHHHHHHHHHHH
Q 020060 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA-T-EEVQMMVNLLDK 267 (331)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~l~~~~~~l~~ 267 (331)
|++++|+..|+++++.. |.+..+++.+|.++...|++++|+.+|++++..+|.+.. . ..++.++...|+
T Consensus 194 -------~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 194 -------GDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred -------CCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999854 889999999999999999999999999999999988644 3 778889999999
Q ss_pred HHHHHHhhhhhhhHH
Q 020060 268 IENLLKGHAKTKRVA 282 (331)
Q Consensus 268 ~~~a~~~~~~a~~l~ 282 (331)
+++|+..+.++.++.
T Consensus 265 ~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 265 EAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999998888776653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=171.06 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=185.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH--------------HHHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD--------------AWLCL 105 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~l 105 (331)
.++++|+..+..... ..+....+++.+|.++...|++ ++|+.+|+++++.+|++.. ....+
T Consensus 283 g~~~~A~~~l~~aL~----~~P~~~~a~~~Lg~~~~~~g~~-~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 283 GQGGKAIPELQQAVR----ANPKDSEALGALGQAYSQQGDR-ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 445667777766553 2345578899999999999998 9999999999999997642 12355
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 106 GSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
|.++...|++++|+.+|+++++.+|++ .++..+|.++...| ++++|+..|+++++.+|.+..++..++.++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g--------~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK--------DYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888999999999999999999999998 88899999999887 599999999999999999998888777765
Q ss_pred Hhhh-------hh--------------------------cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 185 LTSF-------FV--------------------------TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 185 ~~~~-------~~--------------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
...- +. ......|++++|+..|+++++.. |+++.+++.+|.++..
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 3100 00 00002389999999999999955 9999999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
.|++++|...|++++..+|+++.. ..++..+...++.++|+..+.+.
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 999999999999999999999887 77788888888888888766553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-19 Score=150.13 Aligned_cols=218 Identities=16% Similarity=0.186 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCCCCCCCC-cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-------------------
Q 020060 40 NESDLALRLLGSVPPEQRKS-PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------------------- 99 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------------------- 99 (331)
++.++|+++|...... . ++....+|..+|.+....+++ +.|+..|++++..++..+
T Consensus 22 ~~~~~Al~~L~~~~~~---~~~~~~~~~~~~~a~La~~~~~~-~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~ 97 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQK---IAPPDDPEYWRLLADLAWSLGDY-DEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc---ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 4445566666332211 2 344455666666666666665 666666666665554433
Q ss_pred -------------HHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHH
Q 020060 100 -------------DAWLCLGSCIWKKGDLPAAKNCFNLALSKG--PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHA 163 (331)
Q Consensus 100 -------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~ 163 (331)
..+.....++...++++++...+.++.... +.+ ..|..+|.++...| +.++|+.++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G--------~~~~A~~~~ 169 (280)
T PF13429_consen 98 KLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG--------DPDKALRDY 169 (280)
T ss_dssp --------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC--------HHHHHHHHH
T ss_pred cccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 334445555666677777777777655433 233 56677788887776 588999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 164 KEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 164 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
+++++.+|+++.++..++.++... |+++++...+....+.. |.++..+..+|.++..+|++++|+.+|+
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~---------~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDM---------GDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccc
Confidence 999999999999888888888877 88888888888777743 8888888899999999999999999999
Q ss_pred HHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 244 ASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 244 ~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+++..+|+++.. ..++.++...|+.++|...+.++.+
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 999999998887 8999999999999999887777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=151.99 Aligned_cols=222 Identities=17% Similarity=0.172 Sum_probs=190.0
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChhHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
++.|...+..+.. ..+..+..++..|.+.+..++| ..|+.+|++++.++|.. ++....+|.|++.+|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~----~sp~Nil~LlGkA~i~ynkkdY-~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK----QSPDNILALLGKARIAYNKKDY-RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHh----hCCcchHHHHHHHHHHhccccH-HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHH
Confidence 4555555555443 3456677788888999999999 99999999999999975 6788999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.|.++++++|++ .++..||.+..... ....+..++..+.++...+|.+|.+...|+.-++.. |+|
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~-----d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK---------~dy 286 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFN-----DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK---------KDY 286 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc---------ccH
Confidence 999999999988 88888998877654 335699999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHhch-hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhh
Q 020060 200 LQSLKAYQNAEKDE-RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 200 ~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
..++.....++... ..+.-.+.+|.+|.+|+.+|+|++|..+|.++++.+|++.. + .++|.++...|.++.+...|.
T Consensus 287 ~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 287 ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 99999999999732 11233456999999999999999999999999999999844 5 999999999999999998888
Q ss_pred hhhhHH
Q 020060 277 KTKRVA 282 (331)
Q Consensus 277 ~a~~l~ 282 (331)
+..+..
T Consensus 367 kv~k~~ 372 (1018)
T KOG2002|consen 367 KVLKQL 372 (1018)
T ss_pred HHHHhC
Confidence 776543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-18 Score=146.52 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
.+.+|.-.++.... ..|..+.+|..+|.+....++ ...||..++++++++|++.+++..||.+|...|.-.+|+.
T Consensus 300 ~L~~A~LafEAAVk----qdP~haeAW~~LG~~qaENE~-E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 300 DLSEAALAFEAAVK----QDPQHAEAWQKLGITQAENEN-EQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred CchHHHHHHHHHHh----hChHHHHHHHHhhhHhhhccc-hHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34555555554443 557889999999999999999 4999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh--------------------------------------------HHHhhHHHHHHHhccCchhHHHHH
Q 020060 121 CFNLALSKGPNK--------------------------------------------KILCQLSMLERSMAQGSENQAEIV 156 (331)
Q Consensus 121 ~~~~al~~~~~~--------------------------------------------~~~~~l~~~~~~~g~~~~~~~~~~ 156 (331)
++.+.+...|.. ++...||.+|.-. +.|
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls--------~ef 446 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS--------GEF 446 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc--------hHH
Confidence 999997665432 1333444444433 579
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 157 EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 157 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
++|+.+|+.|+...|++...|+.||-++... .+.++|+..|++|+++. |....+++|+|.++..+|.|.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~---------~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANG---------NRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCC---------cccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHH
Confidence 9999999999999999999999999999877 89999999999999966 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 020060 237 RALSGFEASALKDPS 251 (331)
Q Consensus 237 ~A~~~~~~al~~~~~ 251 (331)
+|.++|-.|+.+.+.
T Consensus 516 EA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999998776
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-17 Score=133.04 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=160.5
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
++++|+..+..... ..+.....+..+|.++...|++ ++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus 46 ~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 46 DLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGEL-EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred CHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 34455555544332 2234567888999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC--Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 121 CFNLALSKGP--NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 121 ~~~~al~~~~--~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
.|++++...+ .. ..+..+|.++...| ++++|...+.+++..+|.++..+..+|.++... |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~ 183 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAG--------DFDKAEKYLTRALQIDPQRPESLLELAELYYLR---------G 183 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc---------C
Confidence 9999998643 23 67888999999886 599999999999999999999999999999998 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
++++|+..+++++.. .|.++..+..++.++...|+.++|..+.+......|
T Consensus 184 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 184 QYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999985 388888899999999999999999999888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=135.70 Aligned_cols=202 Identities=13% Similarity=0.116 Sum_probs=160.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...+..++++|....+. ..|+..|.+.++..|.+...+...+.+|..++++++|+++|+.+++..|.+ ++.-.+|.-|
T Consensus 256 ~dTfllLskvY~ridQP-~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred hhHHHHHHHHHHHhccH-HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 44566667777777774 777777777777777777777777777777777777777777777777777 6666666666
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDL 221 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~ 221 (331)
+.-+ +.+-|+.+|++.++..-.+++.+.++|.|++.. ++++-++.+|++++.....|+ -.++
T Consensus 335 fY~~--------~PE~AlryYRRiLqmG~~speLf~NigLCC~ya---------qQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 335 FYDN--------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYA---------QQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred ccCC--------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh---------cchhhhHHHHHHHHhhccCcchhhhh
Confidence 5443 477888888888888888889999999999988 999999999999998543233 4578
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|+|+|.+....||+..|..+|+-++..+|++..+ .+++.+-.+.|++..|...+..|..+.|
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999999998 9999999999999988877776664433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=130.41 Aligned_cols=182 Identities=12% Similarity=0.056 Sum_probs=142.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA---DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
..+..+..++.+|..+...|+| ++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDY-TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 3456788899999999999998 999999999999999875 688999999999999999999999999999987
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhhhcCCC
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFFVTGSW 194 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~ 194 (331)
.+++.+|.++...........+++++|+..+++++..+|++...+ ..+|.++...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~------- 179 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR------- 179 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 368889999886521111123569999999999999999987554 2445556655
Q ss_pred ChhhHHHHHHHHHHHHhch-hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 195 DHSKLLQSLKAYQNAEKDE-RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
|++.+|+..|++++... ..|..+.+++.+|.++..+|++++|..+++......|
T Consensus 180 --g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 180 --GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77788888888777632 0123346777888888888888888777776655554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=134.01 Aligned_cols=200 Identities=12% Similarity=0.105 Sum_probs=164.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
....++-.+-.++...+.+ ++|+..+.+++.++|++..+|..+|.++...| ++++++.++.++++.+|++ .+|...+
T Consensus 35 ~~~~a~~~~ra~l~~~e~s-erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 35 EFREAMDYFRAVYASDERS-PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 3344444444456677786 99999999999999999999999999999998 6899999999999999999 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
.++..+|. ..+++++.++.++++.+|++..+|...+.++... |++++++.++.++|+.+ |.+.
T Consensus 114 ~~l~~l~~------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l---------~~~~eeL~~~~~~I~~d--~~N~ 176 (320)
T PLN02789 114 WLAEKLGP------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL---------GGWEDELEYCHQLLEED--VRNN 176 (320)
T ss_pred HHHHHcCc------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHC--CCch
Confidence 98887763 1246789999999999999999999999999988 99999999999999955 9999
Q ss_pred hHHhhHHHHHHHh---hcH----HHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhh
Q 020060 220 DLYFNCATVNKYL---ENY----ERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTK 279 (331)
Q Consensus 220 ~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~ 279 (331)
.+|+.++.+...+ |.+ ++++.+..+++.++|++..+ ..++.++.. +++..++++.+.++.
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 9999999998776 333 57888899999999999988 777777765 344455555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=130.30 Aligned_cols=205 Identities=15% Similarity=0.050 Sum_probs=170.5
Q ss_pred HHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccc-ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh--hHHH
Q 020060 43 DLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVP-EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDL--PAAK 119 (331)
Q Consensus 43 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~ 119 (331)
+.|+.....+.. ..+....+|..+|.++..+| ++ ++++..+.+++..+|++..+|..++.++...|+. ++++
T Consensus 54 erAL~lt~~aI~----lnP~~ytaW~~R~~iL~~L~~~l-~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 54 PRALDLTADVIR----LNPGNYTVWHFRRLCLEALDADL-EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred HHHHHHHHHHHH----HCchhHHHHHHHHHHHHHcchhH-HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 345555444432 33466778999999999998 55 9999999999999999999999999999998874 7889
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.++.++++.+|++ .+|...+.++..+| +++++++++.++++.+|.+..+|+.++.++..+....+ ....
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~--------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~--~~~~ 198 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLG--------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG--LEAM 198 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc--cccc
Confidence 9999999999999 99999999999886 59999999999999999999999999998765410000 0012
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
.++++.+..++|..+ |+|..+|..++.++.. +++..+|...+.+++...|.+..+ ..++.++..
T Consensus 199 ~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 357888999999965 9999999999999988 456778999999999999998887 888888765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=133.50 Aligned_cols=185 Identities=15% Similarity=0.115 Sum_probs=135.5
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
.+.|+..+..... ..+..+.+|+.+|.++...|++ ++|+..|+++++++|++..++.++|.++...|++++|+..
T Consensus 80 ~~~A~~~~~~Al~----l~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 80 RALARNDFSQALA----LRPDMADAYNYLGIYLTQAGNF-DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444444332 2345678999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 122 FNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 122 ~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
|+++++.+|++........+.... +++++|+..+.+++...+.. .|. .+.++... |++..
T Consensus 155 ~~~al~~~P~~~~~~~~~~l~~~~--------~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~l---------g~~~~ 214 (296)
T PRK11189 155 LLAFYQDDPNDPYRALWLYLAESK--------LDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYL---------GKISE 214 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHcc--------CCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHc---------cCCCH
Confidence 999999999884211111112222 35899999998876543322 232 34444444 44432
Q ss_pred --HHHHHHH----HHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 202 --SLKAYQN----AEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 202 --A~~~~~~----al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
++..+.+ .++. .|..+++|+++|.++..+|++++|+.+|++++..+|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~l--~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 215 ETLMERLKAGATDNTEL--AERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred HHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3333332 2232 367778999999999999999999999999999997543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-16 Score=118.52 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHH
Q 020060 85 EDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHA 163 (331)
Q Consensus 85 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~ 163 (331)
..+|+++++++|+. +..+|.++...|++++|+.+|++++.++|.+ .++..+|.++..+| ++++|+..|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHH
Confidence 45677777777764 4556777777777777777777777777776 67777777777654 477777777
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh
Q 020060 164 KEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL 232 (331)
Q Consensus 164 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 232 (331)
++++.++|+++.+++++|.++... |++++|+..|+++++.. |+++..+.++|.+....
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~---------g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMM---------GEPGLAREAFQTAIKMS--YADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHH
Confidence 777777777777777777777776 77777777777777744 77777777766665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-16 Score=116.85 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 118 AKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 118 A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
-...|+++++++|++ +..+|.++...| ++++|+.+|++++..+|.++.+|..+|.++... |
T Consensus 12 ~~~~~~~al~~~p~~--~~~~g~~~~~~g--------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~---------g 72 (144)
T PRK15359 12 PEDILKQLLSVDPET--VYASGYASWQEG--------DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML---------K 72 (144)
T ss_pred HHHHHHHHHHcCHHH--HHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH---------h
Confidence 356899999999986 557899998776 599999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
++++|+..|++++..+ |.++.+++++|.++..+|++++|+..|++++.+.|+++.. ..++.+...++.
T Consensus 73 ~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 73 EYTTAINFYGHALMLD--ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred hHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999966 9999999999999999999999999999999999999987 777777766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=132.15 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=189.0
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
++.+.+++.+.+... +|....-+-..+| ++...|+. .+-...-.+.++..|..+-.|+..|..|...|++++|.+
T Consensus 259 ~f~~c~kit~~lle~---dpfh~~~~~~~ia-~l~el~~~-n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 259 RFKECLKITEELLEK---DPFHLPCLPLHIA-CLYELGKS-NKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred hHHHHHHHhHHHHhh---CCCCcchHHHHHH-HHHHhccc-chHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 344555555554432 4444444555667 67777775 666677777888999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
+|.++..++|.. .+|...|..+...| ..++|+.+|..|-++.|..-.....+|.-|..+ +++
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~--------EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t---------~n~ 396 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEG--------EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT---------NNL 396 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcc--------hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh---------ccH
Confidence 999999999999 99999999998776 599999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC----CC---CcHH-HHHHHHHHHHHHHHHH
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD----PS---LNAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~---~~~~-~~l~~~~~~l~~~~~a 271 (331)
+-|...|.+|+... |.+|-++..+|.+.+..+.|.+|..+|+.++..- +. +... .++|.++.+++++.+|
T Consensus 397 kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999999966 9999999999999999999999999999999432 22 3334 9999999999999999
Q ss_pred HHhhhhhhhHHHHHhh
Q 020060 272 LKGHAKTKRVASLASS 287 (331)
Q Consensus 272 ~~~~~~a~~l~~~~~~ 287 (331)
+..+++++.+.+...+
T Consensus 475 I~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDAS 490 (611)
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999987665433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=133.55 Aligned_cols=184 Identities=21% Similarity=0.215 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHhCChhH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN--PSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
+..++|+.++...-. .......+.....++...+++ +++...+.++.... +.++..|..+|.++...|++++
T Consensus 91 ~~~~~A~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYE-----RDGDPRYLLSALQLYYRLGDY-DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp --------------------------------H-HHHTT-H-HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccc-----cccccchhhHHHHHHHHHhHH-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 444555555544332 112345556667778888997 99999999977655 6788999999999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|+.+|+++++.+|++ .++..++.++...| +++++...+....+..|+++..|..+|.++..+
T Consensus 165 A~~~~~~al~~~P~~~~~~~~l~~~li~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l--------- 227 (280)
T PF13429_consen 165 ALRDYRKALELDPDDPDARNALAWLLIDMG--------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQL--------- 227 (280)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH---------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc---------
Confidence 999999999999998 78888999988776 588888888888877799999999999999999
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
|++++|+.+|+++++.. |+|+..+..+|.++...|++++|..++++++..
T Consensus 228 g~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 99999999999999955 999999999999999999999999999998763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-15 Score=136.70 Aligned_cols=215 Identities=18% Similarity=0.245 Sum_probs=169.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|..++.++.. ..+.....|+.+|.+|...|+. .++...+..|-.++|.+.+.|..++....++|++.+|.
T Consensus 153 g~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~-eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDI-EKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred CCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 555666777666654 3456677899999999999995 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--------------------------
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-------------------------- 172 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------------------------- 172 (331)
-||.+|++.+|.+ ...+..+.++.++|+. ..|+..|.++++..|.
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~--------~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDL--------KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChH--------HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999 7778888888877753 2222222222222220
Q ss_pred --------------------------------------------------------------------------------
Q 020060 173 -------------------------------------------------------------------------------- 172 (331)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (331)
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence
Q ss_pred ---------------------------------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 173 ---------------------------------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 173 ---------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
.+..+..++.+|... |++.+|+.+|..+.... .-.+.
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~---------~~~~~Al~~l~~i~~~~-~~~~~ 449 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI---------GKYKEALRLLSPITNRE-GYQNA 449 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc---------ccHHHHHHHHHHHhcCc-cccch
Confidence 011222334444444 99999999999998742 13356
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhh
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
.+|+.+|.||..+|.+++|+.+|++++...|++.++ ..++.++..+|+.++|++....
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 789999999999999999999999999999999998 9999999999999999865544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=120.01 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=178.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+..+.-++.+|..++..|++ ..|+..|..|++.+|++..+++..|.+|..+|+...|+.-+.+++++.|+. .+....|
T Consensus 35 ~advekhlElGk~lla~~Q~-sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQL-SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 45566788999999999998 999999999999999999999999999999999999999999999999999 8889999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch---hHHHHHHHH-----HhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN---SWYNLGNAC-----LTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.++..+| .+++|...|...++.+|++.. ++..++.+- ..+..+ .+..|+...|+....+.++
T Consensus 114 ~vllK~G--------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s--~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 114 VVLLKQG--------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS--ASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhhhhcc--------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH--HhcCCchhhHHHHHHHHHh
Confidence 9999887 499999999999999996542 222222111 111000 0022899999999999999
Q ss_pred chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 212 DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.. |.+...+...+.||...|++..|+..++.+-++..++... ..++.++...|+.+.+++...+++++++
T Consensus 184 i~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 184 IQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred cC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 55 9999999999999999999999999999999999999888 9999999999999999977777766544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=129.86 Aligned_cols=219 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcc--cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVV--PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
.+++.|+++|...... +......+-.++...++.. .++ .+|-.+-..++..+..++.++.+.|.+-+..|++++
T Consensus 433 ~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~-~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDF-ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred cCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccch-hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 4455555555544321 1222222333344344332 244 556666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|...|+.++..+... .+++++|..+..+| ++++|+.+|-+.-.+--++.++++.++.+|..+
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~--------~ldeald~f~klh~il~nn~evl~qianiye~l--------- 571 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALG--------NLDEALDCFLKLHAILLNNAEVLVQIANIYELL--------- 571 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhc--------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------
Confidence 666666666555544 56666666665554 366666666655555555566666666666666
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
.+..+|++++.++...- |.+|.++..+|.+|-+.|+-.+|..++-...+..|.+... .+++..+....-.++++..+
T Consensus 572 ed~aqaie~~~q~~sli--p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLI--PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hCHHHHHHHHHHhcccC--CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666666666533 6666666666666666666666666666666666665555 56665555555555555555
Q ss_pred hhhhhH
Q 020060 276 AKTKRV 281 (331)
Q Consensus 276 ~~a~~l 281 (331)
++|.-+
T Consensus 650 ekaali 655 (840)
T KOG2003|consen 650 EKAALI 655 (840)
T ss_pred HHHHhc
Confidence 555433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=137.29 Aligned_cols=190 Identities=12% Similarity=-0.036 Sum_probs=160.8
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhc
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMA 146 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g 146 (331)
.+...|++ ++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|+++++..|.+ .....++.++...|
T Consensus 246 ~Ll~~g~~-~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRY-KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 44577997 999999999999864322 244446999999999999999999999888765 34555666666554
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCC---------------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVKD---------------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
++++|+..++++....|.. ..++..++.++... |++++|+..+++++.
T Consensus 325 --------~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~---------g~~~eA~~~l~~al~ 387 (765)
T PRK10049 325 --------NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS---------NDLPQAEMRARELAY 387 (765)
T ss_pred --------cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Confidence 6999999999999987732 23567888899888 999999999999999
Q ss_pred chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 212 DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.. |.++.++..+|.++...|++++|+..+++++.++|++... ...+.+...++++.+|...+.++.+..
T Consensus 388 ~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 388 NA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 54 9999999999999999999999999999999999999988 899999999999999998887777554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=137.81 Aligned_cols=200 Identities=10% Similarity=0.010 Sum_probs=168.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCCh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDL 115 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 115 (331)
+++++|+..++.+..... ..+..+..+ +|.++...|++ ++|+.+|++++..+|.. ......++.++...|++
T Consensus 251 g~~~eA~~~~~~ll~~~~-~~P~~a~~~--la~~yl~~g~~-e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQ-IIPPWAQRW--VASAYLKLHQP-EKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred hhHHHHHHHHHHhhccCC-CCCHHHHHH--HHHHHHhcCCc-HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 457788888887764311 112333333 58899999997 99999999999988876 45677888899999999
Q ss_pred hHHHHHHHHHHhcCCC-------------h---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 116 PAAKNCFNLALSKGPN-------------K---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~-------------~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
++|+..++++....|. + .++..++.++...| ++++|+..+++++...|.++.++..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g--------~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN--------DLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999988763 1 35667888888776 5999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHH
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQ 259 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 259 (331)
+|.++... |++++|+..+++++... |+++.+++.+|.++...|++++|...++++++..|+++....+.
T Consensus 399 lA~l~~~~---------g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 399 YASVLQAR---------GWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999998 99999999999999965 99999999999999999999999999999999999998654444
Q ss_pred HHH
Q 020060 260 MMV 262 (331)
Q Consensus 260 ~~~ 262 (331)
...
T Consensus 468 ~~~ 470 (765)
T PRK10049 468 RAR 470 (765)
T ss_pred HHH
Confidence 444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-15 Score=120.57 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=173.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....-..+|++|..+|-+ .+|...++.+++..|. ++.+..|+.+|.+..+...|+..|...+...|.+ ..+...+.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~-r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMP-RRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcCh-hhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 3344445699999999997 9999999999998774 7889999999999999999999999999999999 77888999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++..++ ++++|.++|+.+++.+|.+.++.--+|..|+.. ++.+-|+.+|++.+... -.+|+
T Consensus 299 i~eam~--------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~---------~~PE~AlryYRRiLqmG--~~spe 359 (478)
T KOG1129|consen 299 IHEAME--------QQEDALQLYKLVLKLHPINVEAIACIAVGYFYD---------NNPEMALRYYRRILQMG--AQSPE 359 (478)
T ss_pred HHHHHH--------hHHHHHHHHHHHHhcCCccceeeeeeeeccccC---------CChHHHHHHHHHHHHhc--CCChH
Confidence 999886 599999999999999999999888888888776 99999999999999966 89999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
.+.|+|.|....++++-++..|++++....+... . .+++.+....|++.-|...|.-++
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999999999999999999997654333 3 788888888888888776666555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-12 Score=102.84 Aligned_cols=191 Identities=14% Similarity=0.038 Sum_probs=161.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
+...++-....+....|+. +.|..++++.....|+...+-...|..+...|++++|+++|...++-+|.+ ..+-..-.
T Consensus 50 e~w~l~EqV~IAAld~~~~-~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRD-DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred hHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 4445555666677788895 999999999998899999999999999999999999999999999999999 55555555
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+...+|. -.+|++.+...++.++.+.++|..++.+|+.. |+|++|.-+++..+-.+ |.++-
T Consensus 129 ilka~GK--------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~---------~~f~kA~fClEE~ll~~--P~n~l 189 (289)
T KOG3060|consen 129 ILKAQGK--------NLEAIKELNEYLDKFMNDQEAWHELAEIYLSE---------GDFEKAAFCLEELLLIQ--PFNPL 189 (289)
T ss_pred HHHHcCC--------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH---------hHHHHHHHHHHHHHHcC--CCcHH
Confidence 6666663 56999999999999999999999999999999 99999999999999855 99999
Q ss_pred HHhhHHHHHHHhh---cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 221 LYFNCATVNKYLE---NYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 221 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
.+..+|.+++.+| ++.-|.++|.+++++.|.+... .++..+-..+.+...+.
T Consensus 190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999776 5778999999999999966655 66655555555554444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=128.52 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=161.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
++.+.+...+...... .+.....+....+.++...|++ ++|...+++.++..|+++.++..++.++...|++++|.
T Consensus 132 g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~-~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 132 GDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNEL-HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred CCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 5556666666654321 2222223444568888888887 88999999999999999999999999999999999888
Q ss_pred HHHHHHHhcCCCh--HH-----HhhHHHH---------------HHHhccC---c----------hhHHHHHHHHHHHHH
Q 020060 120 NCFNLALSKGPNK--KI-----LCQLSML---------------ERSMAQG---S----------ENQAEIVEESIQHAK 164 (331)
Q Consensus 120 ~~~~~al~~~~~~--~~-----~~~l~~~---------------~~~~g~~---~----------~~~~~~~~~A~~~~~ 164 (331)
..+.+..+....+ .. ....+.. ....... . ....|++++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8888888664322 11 0000000 0000000 0 004456888999999
Q ss_pred HHhcCCCCCchhH--HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh--hHHhhHHHHHHHhhcHHHHHH
Q 020060 165 EAITLDVKDGNSW--YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP--DLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 165 ~al~~~p~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~ 240 (331)
++++..|++.... .......... ++.+.++..++++++.. |+++ .....+|.++...|++++|.+
T Consensus 288 ~~l~~~pd~~~~~~~~l~~~~~l~~---------~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 288 DGLKKLGDDRAISLPLCLPIPRLKP---------EDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHhhCCCcccchhHHHHHhhhcCC---------CChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 9988888876532 1122222222 67788899999998844 9999 888899999999999999999
Q ss_pred HHH--HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 241 GFE--ASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 241 ~~~--~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
+|+ ++++..|+......++.++..+|+.++|.+.+.+++.+.
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999 688888987777899999999999999999999886553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=131.55 Aligned_cols=209 Identities=17% Similarity=0.169 Sum_probs=175.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
....|++|.++...+++ ..|.+.|...+..+|...+++..+|.+-...++..+|...+..++..+..+ .++..+|..+
T Consensus 496 lt~~YNlarl~E~l~~~-~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDT-EVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 44588999999999997 999999999999999999999999977778889999999999999888777 5555555443
Q ss_pred HHhccC----------------------------------------chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 020060 143 RSMAQG----------------------------------------SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182 (331)
Q Consensus 143 ~~~g~~----------------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 182 (331)
...... .....+.+++|++.|.++++.+|.+..+-+.+|.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI 654 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence 322110 0115667999999999999999999999999999
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC-C-CcHH-HHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP-S-LNAT-EEVQ 259 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~-~~~~-~~l~ 259 (331)
++... |++.+|...|.++.... .+++++|.|+|.||..+|+|..|++.|+.+++..- . +... ..++
T Consensus 655 VLA~k---------g~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 655 VLAEK---------GRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhc---------cCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 99988 99999999999999843 77899999999999999999999999999998644 3 3334 8999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 260 MMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 260 ~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+++...|.+.++.....+|+++.+.
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 9999999999999988888876553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-14 Score=126.67 Aligned_cols=222 Identities=19% Similarity=0.173 Sum_probs=175.3
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhC
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g 113 (331)
+..|++.+.+... ...+.-+.....+|.+|...++| .+|+..|++++.+ +|.-+.++.+||.+|...|
T Consensus 222 ~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~-~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G 297 (508)
T KOG1840|consen 222 CKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKY-DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG 297 (508)
T ss_pred HHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 3444555443332 24556666676799999999998 9999999999986 3455778999999999999
Q ss_pred ChhHHHHHHHHHHhcCCC-----h----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--------CCCchh
Q 020060 114 DLPAAKNCFNLALSKGPN-----K----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD--------VKDGNS 176 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~-----~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~ 176 (331)
++++|..++++++++... . ..+.+++.++..++ ++++|+.++++++++. |.-+..
T Consensus 298 Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~--------~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 298 KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN--------EYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 999999999999977533 1 46667888888665 5999999999988752 244668
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh------cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc--
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER------MKSNPDLYFNCATVNKYLENYERALSGFEASALK-- 248 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 248 (331)
+.+||.+|..+ |++++|.+.|++++.... .+.....+.++|..+.+++++.+|...|..+..+
T Consensus 370 ~~nl~~l~~~~---------gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 370 YANLAELYLKM---------GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred HHHHHHHHHHh---------cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 89999999999 999999999999997321 1233455899999999999999999999998875
Q ss_pred --CCCCcH---H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 249 --DPSLNA---T-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 249 --~~~~~~---~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.|+++. . .+++.+|..+|++++|++...++.+....
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 344433 4 99999999999999999888888766554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=122.13 Aligned_cols=194 Identities=16% Similarity=0.095 Sum_probs=141.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
-.+.++.+.|++.+..|++ ++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+-.++ .+++.++.
T Consensus 488 yn~~a~~nkgn~~f~ngd~-dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDL-DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred cCHHHhhcCCceeeecCcH-HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455677788888888887 888888888888888888888888888888888888888888877766666 77888888
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc-------------------------CCCC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT-------------------------GSWD 195 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-------------------------~~~~ 195 (331)
+|..+. +..+|++.+.++..+-|++|.++..||.+|-...... .+.+
T Consensus 567 iye~le--------d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 567 IYELLE--------DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHhh--------CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 887764 4777888888887777877777777776665430000 0013
Q ss_pred hhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 196 HSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
..-+++|+.+|+++.-.. |........++.|+.+.|+|.+|+..|+..-+..|.+... .-+-++...+|
T Consensus 639 tqf~ekai~y~ekaaliq--p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQ--PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred hHHHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 366677888888777633 7777777777888888888888888888888888887765 44444444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-14 Score=121.79 Aligned_cols=208 Identities=16% Similarity=0.162 Sum_probs=174.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
+.-.-.+|+..+...+| ..|+++|..++.++ .+...+.+.+.+|+..|.+...+.....+++..... .-+..++.++
T Consensus 224 a~~ek~lgnaaykkk~f-~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDF-ETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred hhHHHHHHHHHHHhhhH-HHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 44566789999999998 99999999999999 888899999999999999999999999998887776 3333466666
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCC--------------------------CCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLD--------------------------VKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
..+|..+... ++++.|+.+|.+++... |.-..--..-|+.++..
T Consensus 302 ~r~g~a~~k~-~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~--------- 371 (539)
T KOG0548|consen 302 ARLGNAYTKR-EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK--------- 371 (539)
T ss_pred HHhhhhhhhH-HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc---------
Confidence 6665544433 66888888888887632 22223334557777777
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
|+|..|+..|.++|+.+ |+++..|.|+|.||..+|.+..|+...+.+++++|++... ..-|.++..+.++++|++.|
T Consensus 372 gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999955 9999999999999999999999999999999999999998 88899999999999999999
Q ss_pred hhhhhHHHHH
Q 020060 276 AKTKRVASLA 285 (331)
Q Consensus 276 ~~a~~l~~~~ 285 (331)
.+++.+++..
T Consensus 450 ~eale~dp~~ 459 (539)
T KOG0548|consen 450 QEALELDPSN 459 (539)
T ss_pred HHHHhcCchh
Confidence 9999887543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-14 Score=125.13 Aligned_cols=190 Identities=11% Similarity=0.034 Sum_probs=147.6
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----------------
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---------------- 132 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------- 132 (331)
..+.++...|++ ++|+..+++..+.+|+++.++..++.+|...|++++|+..+.+..+..+.+
T Consensus 158 ~~a~l~l~~g~~-~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 158 TRVRIQLARNEN-HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 447788888887 888888888888888888888888888888888888887777766554332
Q ss_pred ---------------------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 133 ---------------------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 133 ---------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
.....++..+.. .|+.++|...++++++. |.++......+.+
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~--------~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l-- 305 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE--------CDDHDTAQQIILDGLKR-QYDERLVLLIPRL-- 305 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--
Confidence 111122223332 34578888888888874 3344333333332
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLL 265 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l 265 (331)
.. +++++++...++.++. .|+++..+..+|.++...|++++|..+|+++++..|++.....++.++..+
T Consensus 306 ~~---------~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 306 KT---------NNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL 374 (398)
T ss_pred cC---------CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 22 7888999999999884 499999999999999999999999999999999999987778899999999
Q ss_pred HHHHHHHHhhhhhhhH
Q 020060 266 DKIENLLKGHAKTKRV 281 (331)
Q Consensus 266 ~~~~~a~~~~~~a~~l 281 (331)
|+.++|...|.+++.+
T Consensus 375 g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 HKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-14 Score=112.35 Aligned_cols=154 Identities=8% Similarity=0.049 Sum_probs=125.7
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCc
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGS 149 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~ 149 (331)
+..|+..|++ +......++.. +|.. -+...++.++++..++++++.+|++ ..|..+|.++...|
T Consensus 23 ~~~Y~~~g~~-~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g--- 87 (198)
T PRK10370 23 VGSYLLSPKW-QAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN--- 87 (198)
T ss_pred HHHHHHcchH-HHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---
Confidence 4567788887 65433332211 1211 1113677889999999999999999 99999999999887
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH-HhhhhhcCCCChhh--HHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 150 ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC-LTSFFVTGSWDHSK--LLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
++++|+..|+++++++|+++.++..+|.++ ... |+ +++|...++++++.+ |+++.+++++|
T Consensus 88 -----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~---------g~~~~~~A~~~l~~al~~d--P~~~~al~~LA 151 (198)
T PRK10370 88 -----DYDNALLAYRQALQLRGENAELYAALATVLYYQA---------GQHMTPQTREMIDKALALD--ANEVTALMLLA 151 (198)
T ss_pred -----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHhC--CCChhHHHHHH
Confidence 599999999999999999999999999975 555 55 599999999999955 99999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 227 TVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.++...|++++|+.+|+++++..|.+...
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999998886654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-13 Score=110.46 Aligned_cols=185 Identities=15% Similarity=0.228 Sum_probs=158.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HH
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KI 134 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~ 134 (331)
..+....+++.+|.+|..+|+- ..|+..+.+++++.|++..+....|.+++.+|++++|..-|+.++..+|++ .+
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGks-k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKS-KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCC-ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 4456778889999999999995 999999999999999999999999999999999999999999999999966 33
Q ss_pred HhhHHHHHHH--hccC--chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 135 LCQLSMLERS--MAQG--SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 135 ~~~l~~~~~~--~g~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
...++.+... +-.. ..--.|+...|+.+....+++.|.+...+...+.||... |+...|+.-+..+-
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~---------~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE---------GEPKKAIHDLKQAS 216 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc---------CcHHHHHHHHHHHH
Confidence 3333222111 1000 000125788999999999999999999999999999988 99999999999999
Q ss_pred hchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 211 KDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
++. .++.+.++.++.+++..|+.+.++.-.+.+++++|++...
T Consensus 217 kLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 217 KLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred hcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 965 9999999999999999999999999999999999998753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-13 Score=125.30 Aligned_cols=204 Identities=17% Similarity=0.189 Sum_probs=176.0
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
..+.++..|+.++..|++ ++|++.+.++|+++|.++.+|+.||.+|.++|+.++|..++-.|-.++|++ +.|..++..
T Consensus 138 ~l~~ll~eAN~lfarg~~-eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDL-EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 356677888999999997 999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-------
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER------- 214 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------- 214 (331)
...+| ++.+|.-+|.+|++.+|.+.......+.+|..+ |+...|+..|.+.+....
T Consensus 217 s~~~~--------~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~---------G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 217 SEQLG--------NINQARYCYSRAIQANPSNWELIYERSSLYQKT---------GDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred HHhcc--------cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---------ChHHHHHHHHHHHHhhCCchhHHHH
Confidence 99886 599999999999999999998888888888876 666666666665544220
Q ss_pred --------------------------------------------------------------------------------
Q 020060 215 -------------------------------------------------------------------------------- 214 (331)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (331)
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence
Q ss_pred --------------------------------------------------cCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 215 --------------------------------------------------MKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 215 --------------------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
..++++.++.++..+...|+|.+|+.+|..
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 002345588899999999999999999999
Q ss_pred HHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 245 SALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 245 al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.....+.... . ..+|.++..++.++.|+..|.++..+.|.
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 9988877654 3 99999999999999999999999976653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=114.59 Aligned_cols=174 Identities=15% Similarity=0.080 Sum_probs=145.9
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.++..+..++.+|..+...|++++|+..|++++...|++ .+++.+|.++...| ++++|+..++++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--------~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--------DYAEAIAAADRFIRL 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999976 57899999999886 599999999999999
Q ss_pred CCCCch---hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH-----------------hhHHHHH
Q 020060 170 DVKDGN---SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY-----------------FNCATVN 229 (331)
Q Consensus 170 ~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------------~~la~~~ 229 (331)
+|+++. +++.+|.++.... .......|++++|+..|++++... |.+...+ ..+|.++
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQI-DRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhc-ccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887 6889999987541 111113388999999999999854 8876442 4678899
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCc---HH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 230 KYLENYERALSGFEASALKDPSLN---AT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 230 ~~~g~~~~A~~~~~~al~~~~~~~---~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
...|++.+|+..|++++...|+.+ .+ ..++.++..+|++++|.+.+...
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999988764 34 89999999999999998765543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-13 Score=127.89 Aligned_cols=151 Identities=8% Similarity=-0.076 Sum_probs=137.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQH 162 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~ 162 (331)
++.-......-.|.+++++.+||.+....|.+++|...+++++++.|++ .++..++.++.+.+ ++++|+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~--------~~eeA~~~ 142 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ--------GIEAGRAE 142 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--------cHHHHHHH
Confidence 3333334444578899999999999999999999999999999999999 99999999999775 69999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 163 AKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
+++++..+|+++..++.+|.++... |++++|+..|++++... |+++.++.++|.++...|+.++|...|
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~---------g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEI---------GQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHh---------cchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999 99999999999999844 999999999999999999999999999
Q ss_pred HHHHhcCCCCc
Q 020060 243 EASALKDPSLN 253 (331)
Q Consensus 243 ~~al~~~~~~~ 253 (331)
++++....+-.
T Consensus 212 ~~a~~~~~~~~ 222 (694)
T PRK15179 212 QAGLDAIGDGA 222 (694)
T ss_pred HHHHHhhCcch
Confidence 99999876644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-14 Score=125.10 Aligned_cols=208 Identities=16% Similarity=0.115 Sum_probs=170.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 129 (331)
..|....+...+|..|...|+| +.|+..++.+++. .|.-......+|.+|...+++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~-e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRL-EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5566777777899999999998 9999999999998 56666677779999999999999999999999764
Q ss_pred ----CCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--------CCCchhHHHHHHHHHhhhhhcCC
Q 020060 130 ----PNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD--------VKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 130 ----~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
+++ .++.+||.+|...| ++++|..++++|+++. |.-+..+.+++.++..+
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~G--------Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~------ 338 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQG--------KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM------ 338 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh------
Confidence 233 67888999999776 5999999999888753 33345677888888888
Q ss_pred CChhhHHHHHHHHHHHHhchh---cCCC---hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC--------CCcHH-HHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDER---MKSN---PDLYFNCATVNKYLENYERALSGFEASALKDP--------SLNAT-EEV 258 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~---~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~-~~l 258 (331)
+++++|+.++++++++-. .+.+ +..+.++|.+|..+|+|.+|...|++++.+.. ..... ..+
T Consensus 339 ---~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 339 ---NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ---cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 999999999999997321 1233 45589999999999999999999999998642 12223 888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 259 QMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 259 ~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+..+.+++++.+|.+.|.++..+...
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHH
Confidence 88889999999999999999988743
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-13 Score=110.54 Aligned_cols=213 Identities=19% Similarity=0.157 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCC
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-----ADAWLCLGSCIWKKGD 114 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~ 114 (331)
++-++|++.+-++.. ..+........+|+.+...|.. +.||..-+..+ ..|+. ..+...||.-|+..|-
T Consensus 49 ~Q~dKAvdlF~e~l~----~d~~t~e~~ltLGnLfRsRGEv-DRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 49 NQPDKAVDLFLEMLQ----EDPETFEAHLTLGNLFRSRGEV-DRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred cCcchHHHHHHHHHh----cCchhhHHHHHHHHHHHhcchH-HHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 333444444444333 2333444444445555555552 44444333222 22322 1234444444455555
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHhhh
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD-----GNSWYNLGNACLTSF 188 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~ 188 (331)
++.|...|........-. .++..+-.+|. ..+++++|++..++...+.+.. +..+..|+..+...
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ--------~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~- 193 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQ--------ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS- 193 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh-
Confidence 555555554443322111 44444444444 2234555555555555555433 22334444444444
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT--EEVQMMVNLLD 266 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~l~~~~~~l~ 266 (331)
.+.+.|+..+.++++.+ |.+..+-..+|.++...|+|..|++.++.+++.+|+...- ..+..+|..+|
T Consensus 194 --------~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 194 --------SDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred --------hhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 55555666666665533 5555555556666666666666666666666666554442 55555555555
Q ss_pred HHHHHHHhhhh
Q 020060 267 KIENLLKGHAK 277 (331)
Q Consensus 267 ~~~~a~~~~~~ 277 (331)
+..+...-..+
T Consensus 264 ~~~~~~~fL~~ 274 (389)
T COG2956 264 KPAEGLNFLRR 274 (389)
T ss_pred CHHHHHHHHHH
Confidence 55555544333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=113.14 Aligned_cols=121 Identities=15% Similarity=0.237 Sum_probs=111.0
Q ss_pred ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH-HHhccCchhHHH
Q 020060 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE-RSMAQGSENQAE 154 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~-~~~g~~~~~~~~ 154 (331)
.++. ++++..++++++.+|+++++|..+|.+|...|++++|+..|++++++.|++ ..+..+|.++ ...|. .
T Consensus 52 ~~~~-~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~------~ 124 (198)
T PRK10370 52 QQTP-EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ------H 124 (198)
T ss_pred chhH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC------C
Confidence 5665 889999999999999999999999999999999999999999999999999 8999999975 55442 1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
.+++|...++++++.+|+++.+++.+|.++... |++++|+.+|+++++..
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~---------g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQ---------ADYAQAIELWQKVLDLN 174 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC
Confidence 259999999999999999999999999999999 99999999999999854
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-13 Score=109.19 Aligned_cols=216 Identities=14% Similarity=0.080 Sum_probs=177.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
..++.|+.+-..+...+......+..+++.+|.-|+..|-+ +.|...|........--..+...|-.+|....+|++|+
T Consensus 83 GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~-DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 83 GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL-DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 55667777666665443334557788999999999999998 99999999988766666789999999999999999999
Q ss_pred HHHHHHHhcCCCh------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 120 NCFNLALSKGPNK------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 120 ~~~~~al~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
+.-++..++.+.. ..++.++..+. ...+++.|+..+.+|++.+|++..+-..+|.+....
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~--------~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~------ 227 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQAL--------ASSDVDRARELLKKALQADKKCVRASIILGRVELAK------ 227 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc------
Confidence 9999999999876 44555666655 335699999999999999999999999999999988
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCC-hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSN-PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
|+|++|++.++++++.+ |.. +.+.-.+..+|..+|+.++....+.++.+..+.......+........-.+.|.
T Consensus 228 ---g~y~~AV~~~e~v~eQn--~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 228 ---GDYQKAVEALERVLEQN--PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQ 302 (389)
T ss_pred ---cchHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHH
Confidence 99999999999999854 654 567889999999999999999999999999888665555555555555555555
Q ss_pred Hhh
Q 020060 273 KGH 275 (331)
Q Consensus 273 ~~~ 275 (331)
...
T Consensus 303 ~~l 305 (389)
T COG2956 303 AYL 305 (389)
T ss_pred HHH
Confidence 333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-13 Score=113.57 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=103.6
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
-|+.-|...+..++| ..|+.+-.++|+.+|.+..++...|..+...|+.++|+-.|+.+..+.|.. ..+..+-.+|..
T Consensus 302 ~wfV~~~~l~~~K~~-~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKF-ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhhH-HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 344445555555554 555555555555555555555555555555555555555555555555555 555555555554
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHH-HHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLG-NACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYF 223 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (331)
.| .+.+|.-..+.+++..|.++.++..+| .++... ..--++|...++++++++ |....+-.
T Consensus 381 ~~--------~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d--------p~~rEKAKkf~ek~L~~~--P~Y~~AV~ 442 (564)
T KOG1174|consen 381 QK--------RFKEANALANWTIRLFQNSARSLTLFGTLVLFPD--------PRMREKAKKFAEKSLKIN--PIYTPAVN 442 (564)
T ss_pred hc--------hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC--------chhHHHHHHHHHhhhccC--CccHHHHH
Confidence 43 355555555555555555555555554 222211 122345555555555533 55555555
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 224 NCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 224 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.+|..+..-|.+..++..+++.+...|+..-...+|.++...+.+.+++..|.+|++++|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 555555555555555555555555555544445555555555555555555555555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-13 Score=116.91 Aligned_cols=202 Identities=19% Similarity=0.148 Sum_probs=182.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~ 141 (331)
....+|+..+.-+...|+. ..|...+.++++.+|++.+.|...-.+.....+++.|...|.++....|+..+|+.-+.+
T Consensus 582 kae~lwlM~ake~w~agdv-~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDV-PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANL 660 (913)
T ss_pred cchhHHHHHHHHHHhcCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHH
Confidence 3345677788888899996 999999999999999999999999999999999999999999999999998999998888
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
.+.++ +.++|+..++++++..|.....|..+|.++..+ ++.+.|...|...++.. |..+-+
T Consensus 661 er~ld--------~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~---------~~ie~aR~aY~~G~k~c--P~~ipL 721 (913)
T KOG0495|consen 661 ERYLD--------NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM---------ENIEMAREAYLQGTKKC--PNSIPL 721 (913)
T ss_pred HHHhh--------hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH---------HHHHHHHHHHHhccccC--CCCchH
Confidence 88775 599999999999999999999999999999999 99999999999999977 999999
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|..++.+-...|+...|...++++...+|.+... ...-++..+.|..+.|.....+|++--+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999887 6666777888888888766666654433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=114.43 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=177.8
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 34 KVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 34 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
......+++..|+...++... ..+.....+...|..+...++. ++|+-.|+.|..+.|...+.|.+|-.+|...|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~-~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERH-TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccch-HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 444566888889888888775 5567778899999999999996 99999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCh-HHHhhHH-HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc
Q 020060 114 DLPAAKNCFNLALSKGPNK-KILCQLS-MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-~~~~~l~-~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 191 (331)
.+.+|...-+.++...|.+ ..+..+| .++..-. .--++|.+++++++++.|....+...++.++...
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-------~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E---- 451 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-------RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE---- 451 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-------hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh----
Confidence 9999999999999999988 7777776 5554332 1368999999999999999999999999999988
Q ss_pred CCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
|.+++++..+++.+.. ..+...+..+|.++...+.+++|+.+|..|+.++|++... .++..+.
T Consensus 452 -----g~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 452 -----GPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred -----CccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 9999999999999963 4566789999999999999999999999999999998865 4444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-14 Score=117.93 Aligned_cols=211 Identities=18% Similarity=0.138 Sum_probs=161.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.-....|..++...+| ..|+..+..|+++.|+++..|.+.+.+++..|+|++|.-..++.++++|.. ......+.
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y-~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTY-GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHHHhhcchHHHHhhH-HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 4445566677777778887 788888888888888888888888888888888888888887777777665 33333333
Q ss_pred HHHHhccCchh---------------------------------------------------------------------
Q 020060 141 LERSMAQGSEN--------------------------------------------------------------------- 151 (331)
Q Consensus 141 ~~~~~g~~~~~--------------------------------------------------------------------- 151 (331)
++..++.....
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~a 205 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEA 205 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHH
Confidence 33322211000
Q ss_pred ---------HHHHHHHHHHHHHHHhcCCCCCch------------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 152 ---------QAEIVEESIQHAKEAITLDVKDGN------------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 152 ---------~~~~~~~A~~~~~~al~~~p~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
-..+.+.|+..|++++.++|++.. .|..-|+-.+.. |++.+|.++|..+|
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~---------G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN---------GNYRKAYECYTEAL 276 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc---------cchhHHHHHHHHhh
Confidence 123467788888888888887542 344556666666 99999999999999
Q ss_pred hchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 211 KDERMKSNP----DLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 211 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++ |.+. .+|.++|.+...+|+..+|+.....++.++|....+ ...+.++..++++++|+..+.+|.++...
T Consensus 277 ~id--P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 277 NID--PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCC--ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 965 7754 459999999999999999999999999999999998 99999999999999999999999876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-13 Score=118.35 Aligned_cols=201 Identities=11% Similarity=-0.047 Sum_probs=120.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+.+..+..+|.++...|+. +.+...+.++....|.. .+.....|.++...|++++|...++++++..|++ .++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGER-PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4455666667666666665 66666666666655533 4455666677777777777777777777777766 33332
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+..+..+|. ..+....+.+.+.......|.....+..+|.++... |++++|+..+++++... |.
T Consensus 83 -~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~---------G~~~~A~~~~~~al~~~--p~ 146 (355)
T cd05804 83 -HLGAFGLGD----FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA---------GQYDRAEEAARRALELN--PD 146 (355)
T ss_pred -hHHHHHhcc----cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--CC
Confidence 334443332 111233333333333334455555555666666666 77777777777777644 77
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-----EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
++.++..+|.++...|++++|..++++++...|..+.. ..++.++...|++++|+..+.++.
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 76667777777777777777777777777666543221 346666677777777776666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-13 Score=126.42 Aligned_cols=191 Identities=10% Similarity=-0.008 Sum_probs=160.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhh
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQ 137 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 137 (331)
+..+...+..+.+....|++ +.|+..|+++++.+|.++.+...+..++...|+.++|+.++++++ +|.+ ..+..
T Consensus 31 p~~~~~~y~~aii~~r~Gd~-~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~lla 107 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDT-APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLAS 107 (822)
T ss_pred ccchhHHHHHHHHHHhCCCH-HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHH
Confidence 34566788899999999998 999999999999999996555588899999999999999999999 5544 44445
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++...| ++++|++.|+++++.+|+++.++..++.++... ++.++|+..+++++... |.
T Consensus 108 lA~ly~~~g--------dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~---------~q~~eAl~~l~~l~~~d--p~ 168 (822)
T PRK14574 108 AARAYRNEK--------RWDQALALWQSSLKKDPTNPDLISGMIMTQADA---------GRGGVVLKQATELAERD--PT 168 (822)
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc---------CCHHHHHHHHHHhcccC--cc
Confidence 577888776 599999999999999999999999998999888 99999999999999854 76
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKG 274 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~ 274 (331)
+... ..++.++...++..+|+..+++++..+|++... ..+..++...|-...|.+.
T Consensus 169 ~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 169 VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 4443 555556656777877999999999999999987 8888888888777776643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-13 Score=106.25 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=79.4
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
..++..+...|+- +.+..+..++..-+|.+...+..+|......|+|..|+..++++..+.|++ .+|..+|.+|.++|
T Consensus 70 ~~~a~a~~~~G~a-~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDA-DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccc-cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4444455555552 445555555544455555555445555555555555555555555555555 55555555555444
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
++++|...|.+++++.|+.+.+..++|..+.-. |+++.|..++..+.... +.+..+..|++
T Consensus 149 --------r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~---------gd~~~A~~lll~a~l~~--~ad~~v~~NLA 209 (257)
T COG5010 149 --------RFDEARRAYRQALELAPNEPSIANNLGMSLLLR---------GDLEDAETLLLPAYLSP--AADSRVRQNLA 209 (257)
T ss_pred --------ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc---------CCHHHHHHHHHHHHhCC--CCchHHHHHHH
Confidence 355555555555555555555555555555544 55555555555555422 44555555555
Q ss_pred HHHHHhhcHHHHHHH
Q 020060 227 TVNKYLENYERALSG 241 (331)
Q Consensus 227 ~~~~~~g~~~~A~~~ 241 (331)
.+....|++++|...
T Consensus 210 l~~~~~g~~~~A~~i 224 (257)
T COG5010 210 LVVGLQGDFREAEDI 224 (257)
T ss_pred HHHhhcCChHHHHhh
Confidence 555555555555444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=100.39 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
..|++++..+|++ .....+|..+...| ++++|...+++++..+|.++.+|..+|.++... |+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---------~~ 66 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQG--------RYDEALKLFQLLAAYDPYNSRYWLGLAACCQML---------KE 66 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---------HH
Confidence 4688999999988 78888999999776 599999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+++|+..+++++... |.++..++++|.++...|++++|+.+|+++++++|++...
T Consensus 67 ~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 67 YEEAIDAYALAAALD--PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 999999999999955 9999999999999999999999999999999999998764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=103.95 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
..+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|++ ..+..+|......| ++.+|+
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g--------~~~~A~ 120 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG--------NFGEAV 120 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc--------chHHHH
Confidence 45777777778889999999 999999999999999999999998888888 66666888888776 699999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
..++++....|+++.+|..+|.+|... |+++.|...|.+++++. |.++.+..|+|..+.-.|+++.|..
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~---------Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQL---------GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHc---------cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999 99999999999999955 9999999999999999999999999
Q ss_pred HHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHh
Q 020060 241 GFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKG 274 (331)
Q Consensus 241 ~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~ 274 (331)
++..+....+.+... .+++.+....|++.+|.+.
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999988888777 9999999999999988744
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-13 Score=99.66 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
+.|++++..+|++..+.+.+|.++...|++++|...+++++..+|.+ .++..+|.++...| ++++|+.+++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999988 88999999999775 6999999999
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 165 EAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 165 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+++..+|+++..++.+|.++... |++++|+..|+++++.. |++...
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLAL---------GEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhc--cccchH
Confidence 99999999999999999999998 99999999999999955 777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-12 Score=113.11 Aligned_cols=217 Identities=17% Similarity=0.137 Sum_probs=178.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
.+++.|-.+|.+... .....++|+.-+.....++.. ++|+.+++++++..|++...|..+|.++.++++.+.|.
T Consensus 632 ~e~eraR~llakar~-----~sgTeRv~mKs~~~er~ld~~-eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 632 DELERARDLLAKARS-----ISGTERVWMKSANLERYLDNV-EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccHHHHHHHHHHHhc-----cCCcchhhHHHhHHHHHhhhH-HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 556667777766552 234567888888888889996 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
..|...++.-|.. ..|..++.+--..| ..-.|...+.++.-.+|++...|...-.+-+.. |.
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~--------~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~---------gn 768 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDG--------QLVRARSILDRARLKNPKNALLWLESIRMELRA---------GN 768 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhc--------chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc---------CC
Confidence 9999999999998 88888888877665 488999999999999999999998887777777 88
Q ss_pred HHHHHHHHHHHHhch----------------------------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 199 LLQSLKAYQNAEKDE----------------------------RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 199 ~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
.+.|.....++++.. .-..|+.++...|..+....+++.|..+|.++++.+|
T Consensus 769 ~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 769 KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 888888888877643 0125667788999999999999999999999999999
Q ss_pred CCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 251 SLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 251 ~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
++.++ ..+-......|.-+.-.+.+.+..
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99998 777777777775555544444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=109.36 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=148.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H------
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K------ 133 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~------ 133 (331)
..+-+..+.++...|++ ++|+..--..+++++.+.++++..|.|++..++.+.|+.+|++++.++|+. .
T Consensus 169 ~~a~~lka~cl~~~~~~-~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDY-DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hHHHHhhhhhhhhcccc-hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 34455678899999998 999999999999999999999999999999999999999999999999987 1
Q ss_pred ---HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 134 ---ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 134 ---~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
.+..-|.-.+ ..|++..|.++|..+|.++|++. ..|.+++.+...+ |+..+|+...
T Consensus 248 ~le~~k~~gN~~f--------k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL---------grl~eaisdc 310 (486)
T KOG0550|consen 248 KLEVKKERGNDAF--------KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL---------GRLREAISDC 310 (486)
T ss_pred HHHHHHhhhhhHh--------hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc---------CCchhhhhhh
Confidence 2222333333 34579999999999999999864 4678889999988 9999999999
Q ss_pred HHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 207 QNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 207 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+.+++++ +....++...|.|+..++++++|++.|+++++...+..
T Consensus 311 ~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 311 NEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred hhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999966 99999999999999999999999999999999887733
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-12 Score=115.19 Aligned_cols=225 Identities=14% Similarity=0.039 Sum_probs=188.4
Q ss_pred hhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhC
Q 020060 35 VSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 35 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 113 (331)
..+......++++.++.... ..+.+..+.+.++.-|...++. +.|..+.+++++++ .+++.+|..++.++...+
T Consensus 453 ~seR~~~h~kslqale~av~----~d~~dp~~if~lalq~A~~R~l-~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQ----FDPTDPLVIFYLALQYAEQRQL-TSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 34445566677777777654 2334457888899999999996 99999999999995 457899999999999999
Q ss_pred ChhHHHHHHHHHHhcCCChH------------------------------------------------------------
Q 020060 114 DLPAAKNCFNLALSKGPNKK------------------------------------------------------------ 133 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~~------------------------------------------------------------ 133 (331)
++.+|+....-++.-.|+|.
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 99999999999998887730
Q ss_pred --------------------------------------------HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 134 --------------------------------------------ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 134 --------------------------------------------~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.|...+..+. ..++-++|..++.++-.+
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~--------~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFL--------LSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHH--------hcCCchHHHHHHHHHHhc
Confidence 0001111111 223467888899999999
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH--HHHHHHh
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS--GFEASAL 247 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 247 (331)
+|..+..|+..|.++... |..++|.+.|..++..+ |+++.....+|.++...|+..-|.. .+..+++
T Consensus 680 ~~l~~~~~~~~G~~~~~~---------~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVK---------GQLEEAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred chhhHHHHHHhhHHHHHH---------HhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 999999999999999999 99999999999999966 9999999999999999999988888 9999999
Q ss_pred cCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 248 KDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 248 ~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++|.++.+ ..+|.++..+|+...|...|..|..+.+
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99999999 9999999999999999999999997754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=120.98 Aligned_cols=133 Identities=9% Similarity=0.080 Sum_probs=127.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.++.++|.+....|.+ ++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++ .+++.+|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~-~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 84 HTELFQVLVARALEAAHRS-DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred ccHHHHHHHHHHHHHcCCc-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4478899999999999998 999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
++..+| ++++|+.+|++++..+|+++.+|..+|.++... |+.++|...|++++..
T Consensus 163 ~l~~~g--------~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~---------G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIG--------QSEQADACFERLSRQHPEFENGYVGWAQSLTRR---------GALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhc--------chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHh
Confidence 999887 599999999999999999999999999999999 9999999999999984
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-12 Score=113.45 Aligned_cols=218 Identities=8% Similarity=-0.014 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHhCChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAW-LCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A 118 (331)
++++.|.+.+...+. ..+.....+...+.+....|++ +.|..++.++.+.+|+...+. ...+.++...|++++|
T Consensus 98 Gd~~~A~k~l~~~~~----~~~~p~l~~llaA~aA~~~g~~-~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNAD----HAEQPVVNYLLAAEAAQQRGDE-ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 445566666665442 1112233344446666899997 999999999999999875443 4459999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC----------------------------
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL---------------------------- 169 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---------------------------- 169 (331)
...++++.+..|++ .++..++.++...| ++++|+..+.+..+.
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~g--------dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTG--------AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999 88888999998775 466666544444432
Q ss_pred --------------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 170 --------------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 170 --------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
.|+++.++..++..+... |+.++|...++++++. +.++......+.+ ..+++
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~---------g~~~~A~~~L~~~l~~---~~~~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC---------DDHDTAQQIILDGLKR---QYDERLVLLIPRL--KTNNP 310 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhc---CCCHHHHHHHhhc--cCCCh
Confidence 234555666677777777 9999999999999972 5566554444444 34999
Q ss_pred HHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 236 ERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+++++..++.++.+|+++.. ..+|.++...+++.+|.+.++++..+.|.
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 99999999999999999999999877544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-13 Score=108.22 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
++-+..-|.-++..++|.+|+..|.+|++++|++ ..+++.+.+|.++| .++.|++.++.++.++|.+..+|
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg--------~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG--------EYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc--------chHHHHHHHHHHHhcChHHHHHH
Confidence 3455666777777778888888888888888877 66667777887776 37788888888888888888888
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
..||.+|..+ |++++|++.|++++.++ |++...+.+|..+-..+++..
T Consensus 153 ~RLG~A~~~~---------gk~~~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 153 GRLGLAYLAL---------GKYEEAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHcc---------CcHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCC
Confidence 8888888777 78888888888888755 777777777777766666555
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-13 Score=107.61 Aligned_cols=117 Identities=25% Similarity=0.216 Sum_probs=109.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.-+-.-|.-++..++| .+|+..|.+||.++|+++..|.+.|.+|.++|.++.|++-.+.++.++|.. .+|..+|.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y-~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDY-QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4566677889999999999 999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
++..+| ++++|++.|+++++++|++...+.+|..+-...
T Consensus 158 A~~~~g--------k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 158 AYLALG--------KYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHccC--------cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 999997 599999999999999999998888888876655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=114.27 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=150.2
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+-..|..+..+|+- ++|..+.+.++..++.....|..+|.++....+|++|+++|+.|+.+.|+| ..|..++.
T Consensus 39 eHgeslAmkGL~L~~lg~~-~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKK-EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred ccchhHHhccchhhcccch-HHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4556777899999999995 999999999999999999999999999999999999999999999999999 88888999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-cCCC-
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-MKSN- 218 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~- 218 (331)
...+++ +++-....-.+.+++.|..-..|...+..+... |++..|....+...+... .|..
T Consensus 118 LQ~QmR--------d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~---------g~y~~A~~il~ef~~t~~~~~s~~ 180 (700)
T KOG1156|consen 118 LQIQMR--------DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL---------GEYKMALEILEEFEKTQNTSPSKE 180 (700)
T ss_pred HHHHHH--------hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhccCCCHH
Confidence 888876 588888888899999999999999999998888 888888877776665321 1110
Q ss_pred --------------------------------------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHH
Q 020060 219 --------------------------------------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQ 259 (331)
Q Consensus 219 --------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~ 259 (331)
.......|.++..++++++|...|...+..+|++... ..+-
T Consensus 181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 181 DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHH
Confidence 1113455667788888888888888888888888775 5554
Q ss_pred HHH
Q 020060 260 MMV 262 (331)
Q Consensus 260 ~~~ 262 (331)
.++
T Consensus 261 ~~l 263 (700)
T KOG1156|consen 261 KAL 263 (700)
T ss_pred HHH
Confidence 444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-12 Score=109.42 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=129.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh--------------
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS-------------- 127 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 127 (331)
..+.+++.+|......+.- ..|++--.......-....+...+|..|...++++.|+.+|.+++.
T Consensus 262 n~aA~~~e~~~~~~c~~~c-~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~ 340 (539)
T KOG0548|consen 262 NIAAVYLERGKYAECIELC-EKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEA 340 (539)
T ss_pred HHHHHHHhccHHHHhhcch-HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 3344455555544444442 4444433333222222233333355555555555555555555554
Q ss_pred ------------cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 128 ------------KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 128 ------------~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
++|.- .-...-|..++.. ++|..|+..|.+++..+|+++..|.+.+.||..+
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~--------gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL------- 405 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKK--------GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL------- 405 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-------
Confidence 33333 2222335555544 4699999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH
Q 020060 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL 265 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l 265 (331)
|.+..|+...+++++++ |.....|..-|.++..+.+|+.|+..|+.+++.+|++... .++.++...+
T Consensus 406 --~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 406 --GEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred --hhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999966 9999999999999999999999999999999999998877 7777777654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-12 Score=94.14 Aligned_cols=104 Identities=10% Similarity=0.063 Sum_probs=77.3
Q ss_pred HhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 92 VKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 92 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
..+. ++..+..+.+|..++..|++++|...|+.+..++|.+ ..|+++|.++..+| ++.+|+..|..++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~A~~L 98 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGRAAQI 98 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhc
Confidence 3445 5666777777777777777777777777777777777 77777777777664 477777777777777
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
+|++|.+++++|.+++.. |+.+.|...|+.++..
T Consensus 99 ~~ddp~~~~~ag~c~L~l---------G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 99 KIDAPQAPWAAAECYLAC---------DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCCCchHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Confidence 777777777777777777 7777777777777763
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-12 Score=93.50 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=99.3
Q ss_pred HhcC-CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 126 LSKG-PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 126 l~~~-~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
..+. ++. ...+.+|..+...| ++++|...|+-...++|.+...|++||.++..+ |++.+|+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G--------~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~---------g~~~~AI 89 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVK--------EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ---------KHWGEAI 89 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---------hhHHHHH
Confidence 4455 555 78889999999776 599999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
..|.+++.++ |++|..+++.|.|+...|+.+.|.+.|+.++......+
T Consensus 90 ~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 90 YAYGRAAQIK--IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 9999999966 99999999999999999999999999999999875444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=116.95 Aligned_cols=180 Identities=18% Similarity=0.108 Sum_probs=91.5
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSML 141 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~ 141 (331)
.++..+|.+|....+. ..|..+|++|.++++.++.++...+..|.+..+++.|....-++-+..|.. ..|..+|..
T Consensus 493 paf~~LG~iYrd~~Dm-~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDM-KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3444444444444442 444444444444444444444444444444444444444433333333332 233334433
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+..- +++.+|+..|+.+++.+|++...|..+|.+|... |.+.-|+..|.++..++ |.+.-.
T Consensus 572 yLea--------~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s---------Gry~~AlKvF~kAs~Lr--P~s~y~ 632 (1238)
T KOG1127|consen 572 YLEA--------HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES---------GRYSHALKVFTKASLLR--PLSKYG 632 (1238)
T ss_pred ccCc--------cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc---------CceehHHHhhhhhHhcC--cHhHHH
Confidence 3322 3456666666666666666666666666666665 66666666666666544 666666
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
.+..+.+...+|.|.+|+..+...+......... ..++.++.+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6666666666666666666666555544443333 444444333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-11 Score=96.65 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=123.8
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K 133 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~ 133 (331)
...+..++..|..++..|+| .+|+..|++.+...|.. +.+.+.+|.+++..|++++|+..+++.++..|++ .
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y-~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDY-EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 45677889999999999998 99999999999998865 6899999999999999999999999999999988 6
Q ss_pred HHhhHHHHHHHhccCc---hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGS---ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+++.+|.++..+.... ....+...+|+..|+..++..|+++.+-.. ..-+..+...+
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A--------------------~~~l~~l~~~l 140 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA--------------------KKRLAELRNRL 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH--------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH--------------------HHHHHHHHHHH
Confidence 8888999887664322 223455788999999999999987644211 11111111111
Q ss_pred hchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHH
Q 020060 211 KDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIE 269 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~ 269 (331)
. .--+.+|..|.+.|.+..|+..++.+++..|+.... ..+...+..+|...
T Consensus 141 a--------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 141 A--------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp H--------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred H--------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 1 113557777778888888888888888888876653 44445555555554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=107.74 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=137.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH----hcCCCh-HHHhh
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL----SKGPNK-KILCQ 137 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~~~~-~~~~~ 137 (331)
.....+..|.++...|++ ++|...+++++..+|++..++.. +..+...|++..+.....+++ ...|.. ..+..
T Consensus 42 ~~e~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 42 ERERAHVEALSAWIAGDL-PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 345566789999999997 99999999999999999988776 666666665555555555544 344444 56667
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++...| ++++|...+++++++.|+++.++..+|.++... |++++|+.++++++... |.
T Consensus 120 ~a~~~~~~G--------~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~---------g~~~eA~~~l~~~l~~~--~~ 180 (355)
T cd05804 120 LAFGLEEAG--------QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ---------GRFKEGIAFMESWRDTW--DC 180 (355)
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHhhhhcc--CC
Confidence 888999887 599999999999999999999999999999999 99999999999999854 43
Q ss_pred Ch----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 218 NP----DLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 218 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
++ ..+..+|.++...|++++|+..|++++...|.
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 33 34678999999999999999999999877663
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.2e-11 Score=101.74 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=124.5
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|....+++..+..++..|++++|...++..+...|++ ..+...+.++...+ +.++|.+.+++++.++|..+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcCCCcc
Confidence 7888899999999999999999999999999999998 55666888888665 59999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
..+.++|.+|+.. |++.+|+..+++.+..+ |+++..|..+|..|..+|+-.+|...+...+.+......
T Consensus 375 ~l~~~~a~all~~---------g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 375 LLQLNLAQALLKG---------GKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHHHHHHHhc---------CChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHH
Confidence 9999999999988 99999999999999855 999999999999999999999988888888877777554
Q ss_pred H
Q 020060 255 T 255 (331)
Q Consensus 255 ~ 255 (331)
+
T Consensus 444 A 444 (484)
T COG4783 444 A 444 (484)
T ss_pred H
Confidence 4
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=110.38 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=145.7
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERS 144 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 144 (331)
..-..++..+...|-. ..|+..|++ ...|-....||...|+..+|.....+-++.+|+...|..+|.+...
T Consensus 399 q~q~~laell~slGit-ksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGIT-KSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchH-HHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 3344455555555553 555555554 3445555555555565555555555555544443444444443321
Q ss_pred h---------------------ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 145 M---------------------AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 145 ~---------------------g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
. |.... ..++|.++.++++..++++|-....|+.+|.+...+ ++++.|.
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql---------ek~q~av 539 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL---------EKEQAAV 539 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH---------hhhHHHH
Confidence 1 00000 225799999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.+|.+++.+. |++.++|+|++..|...|+-.+|...+++|++.+-++... .+...+....|.+++|++.+.+-..+.
T Consensus 540 ~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999966 9999999999999999999999999999999999777777 888889999999999998888776655
Q ss_pred HH
Q 020060 283 SL 284 (331)
Q Consensus 283 ~~ 284 (331)
..
T Consensus 618 ~~ 619 (777)
T KOG1128|consen 618 KK 619 (777)
T ss_pred hh
Confidence 44
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=116.54 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=149.2
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQH 162 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~ 162 (331)
-+.++--..-..|+.+...+..+.+..+.|+++.|+..|+++++.+|.+ .....+..++...| +.++|+.+
T Consensus 19 ~~~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G--------~~~~A~~~ 90 (822)
T PRK14574 19 LLALFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAG--------RDQEVIDV 90 (822)
T ss_pred HHHHHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcC--------CcHHHHHH
Confidence 3444444556789999999999999999999999999999999999998 44447777777666 59999999
Q ss_pred HHHHhcCCCCCchhHHHH--HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 163 AKEAITLDVKDGNSWYNL--GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
+++++ +|.+...+..+ |.++... |++++|++.|+++++.. |+++.++..++.++...++.++|+.
T Consensus 91 ~eka~--~p~n~~~~~llalA~ly~~~---------gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 91 YERYQ--SSMNISSRGLASAARAYRNE---------KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HHHhc--cCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 99999 55555455444 7799988 99999999999999955 9999999999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 241 GFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 241 ~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++++...+|.+.....++.++...++..+|++.+.++.+..|.
T Consensus 158 ~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 158 QATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999655555566665667776788888888876553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=100.39 Aligned_cols=155 Identities=15% Similarity=0.078 Sum_probs=137.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+|..+..++..|++ +.|...++..++..|+++..+...+.++...++..+|.+.+++++.++|.. ..+.++|.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~-d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQY-DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred cchHHHHHHHHHHHHhccc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 4456788888999999998 999999999999999999999999999999999999999999999999998 78889999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++.+|+..+...+..+|+++..|..|+.+|... |+..+|
T Consensus 383 all~~g--------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~---------g~~~~a------------------ 427 (484)
T COG4783 383 ALLKGG--------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL---------GNRAEA------------------ 427 (484)
T ss_pred HHHhcC--------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh---------CchHHH------------------
Confidence 999887 488999999999999999999999999999987 555444
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
....+..|...|++++|+..+.++.+...-+.
T Consensus 428 -~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 428 -LLARAEGYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 45566777788999999999999998764333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=112.88 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
..|...|-++++++|..+.+|..||.+|+...+...|..+|.+|.++++++ .++-..+..+.... +++.|.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~we~a~ 546 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TWEEAF 546 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cHHHHH
Confidence 789999999999999999999999999999999999999999999999999 88888888888664 589999
Q ss_pred HHHHHHhcCCCCC--chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHH
Q 020060 161 QHAKEAITLDVKD--GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERA 238 (331)
Q Consensus 161 ~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 238 (331)
.....+-+..|.. ...|..+|..|... ++..+|+..|+.+++.. |.+...|..+|.+|...|++..|
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea---------~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEA---------HNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCc---------cchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehH
Confidence 9877777766643 45677789988887 99999999999999955 99999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 239 LSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 239 ~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
++.|.++..++|.+... ...+.+...+|++.+++..+.....
T Consensus 616 lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999887 9999999999999999966655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=104.56 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=155.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-----C
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-----D 114 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~ 114 (331)
+.+++|++.|..... .-.+...++-.+|.++..+|++ ++|...|+..|..+|++...+..+..+..... +
T Consensus 18 g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~ll~kLg~~-~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 18 GDYEEALEHLEKNEK----QILDKLAVLEKRAELLLKLGRK-EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred CCHHHHHHHHHhhhh----hCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 567788888877654 5567777888889999999997 88999999999999999888888888873333 4
Q ss_pred hhHHHHHHHHHHhcCCChHH-------------HhhHHHHHH----HhccC---------ch--hHHHHHHHHHHHHHHH
Q 020060 115 LPAAKNCFNLALSKGPNKKI-------------LCQLSMLER----SMAQG---------SE--NQAEIVEESIQHAKEA 166 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~~~-------------~~~l~~~~~----~~g~~---------~~--~~~~~~~~A~~~~~~a 166 (331)
.+.-...|.+.....|...+ +......|. ..|.+ +. .+..-+.+-+.-+...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~ 172 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNS 172 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHh
Confidence 56667777777776665410 011111111 11110 00 0111222222233322
Q ss_pred hcCC----------CCCc----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh
Q 020060 167 ITLD----------VKDG----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL 232 (331)
Q Consensus 167 l~~~----------p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 232 (331)
++.. ...| .+++.++..|... |++++|+++.+++|..+ |..++.|...|.++...
T Consensus 173 l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~---------g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 173 LESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL---------GDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred hcccCCCCCccccccCCchHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 2211 0112 3457889999888 99999999999999965 99999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 233 ENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 233 g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
|++.+|..+++.|..+|+.+... ...+..+.+.|++++|.+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999887 888888888888888873
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=108.58 Aligned_cols=214 Identities=15% Similarity=0.161 Sum_probs=153.3
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK- 132 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 132 (331)
-..-..+|..+|++|+.+++| .+|+++-.--+.+ .-..+.+--+||..+--.|.|++|+.+..+-+.+...-
T Consensus 51 l~tLSAIYsQLGNAyfyL~DY-~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg 129 (639)
T KOG1130|consen 51 LSTLSAIYSQLGNAYFYLKDY-EKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG 129 (639)
T ss_pred HHHHHHHHHHhcchhhhHhhH-HHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh
Confidence 345567889999999999999 9999876544433 22345566789999999999999999999887665321
Q ss_pred ------HHHhhHHHHHHHhccCc------------hhHHHHHHHHHHHHHHHhcCCCC------CchhHHHHHHHHHhhh
Q 020060 133 ------KILCQLSMLERSMAQGS------------ENQAEIVEESIQHAKEAITLDVK------DGNSWYNLGNACLTSF 188 (331)
Q Consensus 133 ------~~~~~l~~~~~~~g~~~------------~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~ 188 (331)
.+++++|.+|...|... .+....++.|+++|..-+++... .+.++.+||+.|+.+
T Consensus 130 Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL- 208 (639)
T KOG1130|consen 130 DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL- 208 (639)
T ss_pred HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee-
Confidence 78999999999876532 22445678888888877765432 345777888888888
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC----CCCcH--H-HH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALKD----PSLNA--T-EE 257 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~--~-~~ 257 (331)
|+|++|+..-+.-+.+...-.+ ..++.|+|+++..+|+++.|.++|++.+.+. ..... . ..
T Consensus 209 --------Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 209 --------GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred --------ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 8888888877766653222222 2457888888888888888888888876542 22222 2 77
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 258 VQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 258 l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++..+..+.++.+|+.++.+-+.+..
T Consensus 281 LgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 281 LGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888876666555443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=102.98 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=153.1
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
+...++..+.-++..++| ...+...+..++..|.+++.+...|..+...|+-++|..+.+.++..++.. .+|.-+|.+
T Consensus 6 KE~~lF~~~lk~yE~kQY-kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQY-KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 344566777778889999 999999999999999999999999999999999999999999999999988 788889999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
++.- ++|++|+++|+.|+.++|++..+|..++.+..++ ++++-....-.+.+++. |.....
T Consensus 85 ~R~d--------K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm---------Rd~~~~~~tr~~LLql~--~~~ra~ 145 (700)
T KOG1156|consen 85 QRSD--------KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM---------RDYEGYLETRNQLLQLR--PSQRAS 145 (700)
T ss_pred Hhhh--------hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhh--hhhHHH
Confidence 9844 6799999999999999999999999999999999 99999999999999866 999999
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
|...+..+.-.|++..|....+...+..
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999887777655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=106.56 Aligned_cols=112 Identities=16% Similarity=0.056 Sum_probs=104.4
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+...|..++..|+| ++|+.+|.+++.++|+++.++..+|.+|...|++++|+..+++++.++|++ .+++.+|.++..+
T Consensus 5 l~~~a~~a~~~~~~-~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDF-ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 55678889999998 999999999999999999999999999999999999999999999999998 8999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
| ++++|+..|+++++++|+++.+...++.+...+
T Consensus 84 g--------~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 E--------EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred C--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7 599999999999999999999988888876554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-10 Score=101.57 Aligned_cols=168 Identities=13% Similarity=-0.004 Sum_probs=81.5
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
+...|.+....|++ +.|..++.++.+..|+.. .+....+.++...|++++|...+++.++..|++ .++..++.++..
T Consensus 121 ~llaA~aa~~~g~~-~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 121 LIKAAEAAQQRGDE-ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444555555554 555555555555444442 233334555555555555555555555555555 444445555543
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH----HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC----
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN----LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK---- 216 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---- 216 (331)
.| ++++|.+.+.+..+..+.++..... ...-+... +..+++...+.++... .|
T Consensus 200 ~~--------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~---------~~~~~~~~~L~~~~~~--~p~~~~ 260 (409)
T TIGR00540 200 SG--------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE---------AMADEGIDGLLNWWKN--QPRHRR 260 (409)
T ss_pred Hh--------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH---------HHHhcCHHHHHHHHHH--CCHHHh
Confidence 32 3555555555555443222221111 11111111 2223333344444431 13
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+++.++..+|..+...|++++|...++++++..|++..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 35666666777777777777777777777777776653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-09 Score=86.97 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=146.4
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+.|+....+-....+....|+.+-|..|+++.....|.. .+....|..+-..| ++++|+++|...++-+|+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~--------~~~~A~e~y~~lL~ddpt 118 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG--------NYKEAIEYYESLLEDDPT 118 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh--------chhhHHHHHHHHhccCcc
Confidence 445555666677777888999999999999998888988 77777788787665 699999999999999999
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+..++-..-.+...+ |+..+|++.+..-++ .-+.|+++|..++.+|...|+|++|.-++++.+-+.|.+
T Consensus 119 ~~v~~KRKlAilka~---------GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 119 DTVIRKRKLAILKAQ---------GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred hhHHHHHHHHHHHHc---------CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence 998888766666666 888899999999998 459999999999999999999999999999999999999
Q ss_pred cHH-HHHHHHHHHHHHH---HHHHHhhhhhhhHHH
Q 020060 253 NAT-EEVQMMVNLLDKI---ENLLKGHAKTKRVAS 283 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~---~~a~~~~~~a~~l~~ 283 (331)
+.. ..++.++.-+|.. .-+.+.|.++.++.+
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 987 8888888776654 455699999998877
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=104.95 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=152.1
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCC--------------------hh
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGD--------------------LP 116 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~--------------------~~ 116 (331)
.+...-++|+.+..+|.| ++|+-+..+-+.+... ...+++++|.+|...|+ ++
T Consensus 94 EAKssgNLGNtlKv~G~f-deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAF-DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred cccccccccchhhhhccc-chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 345566899999999999 9999998888776432 36799999999988765 34
Q ss_pred HHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHH
Q 020060 117 AAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNA 183 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~ 183 (331)
.|+++|..-+++.... .++-++|..|+.+| +|++|+..-+.-+.+.... ..++.++|++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLG--------df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLG--------DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC 244 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeec--------cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence 5666666666654332 45556666776665 5999988887776654332 3578899999
Q ss_pred HHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC----ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH-----
Q 020060 184 CLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS----NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA----- 254 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 254 (331)
+..+ |+++.|+++|.+.+.+...-. .+...+.+|+.|.-..++..|+.|+.+-+.+.....+
T Consensus 245 hifl---------g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 245 HIFL---------GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred hhhh---------cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999 999999999999886332222 3455899999999999999999999998887544332
Q ss_pred -H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 255 -T-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 255 -~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
+ +.++..+..+|...+|+....+.+++...+
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 2 777777777788887777666666554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-10 Score=92.52 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=92.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD---AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KI 134 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~ 134 (331)
..+..++..|..+...|+| ++|+..|++++...|..+. +.+.+|.+|+..+++++|+..+++.++..|++ .+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y-~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNW-KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4566788899999999998 9999999999999998755 45899999999999999999999999999988 67
Q ss_pred HhhHHHHHHHhccC----------chhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 135 LCQLSMLERSMAQG----------SENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 135 ~~~l~~~~~~~g~~----------~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
++.+|.+...++.. .........+|+..+++.++..|++.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 88888886555421 00112336789999999999999874
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-11 Score=103.80 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=100.9
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
...|...+..| ++++|+..|.++++.+|+++.+|.++|.++... |++++|+..+++++.+.
T Consensus 6 ~~~a~~a~~~~--------~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~---------g~~~eAl~~~~~Al~l~-- 66 (356)
T PLN03088 6 EDKAKEAFVDD--------DFALAVDLYTQAIDLDPNNAELYADRAQANIKL---------GNFTEAVADANKAIELD-- 66 (356)
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--
Confidence 34455555444 699999999999999999999999999999999 99999999999999965
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
|.++.+++.+|.++..+|++++|+.+|++++.++|++... ..++.+...+..
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987 777777666643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-09 Score=98.57 Aligned_cols=131 Identities=13% Similarity=-0.013 Sum_probs=111.3
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+++.+++.+..+| ++++|+++..++++..|+.++.+...|.++... |++.+|...++.+-.++
T Consensus 196 ~~~~lAqhyd~~g--------~~~~Al~~Id~aI~htPt~~ely~~KarilKh~---------G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 196 TLYFLAQHYDYLG--------DYEKALEYIDKAIEHTPTLVELYMTKARILKHA---------GDLKEAAEAMDEARELD 258 (517)
T ss_pred HHHHHHHHHHHhC--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhCC
Confidence 4566899898887 499999999999999999999999999999999 99999999999999965
Q ss_pred hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC--CCc-------HH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 214 RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP--SLN-------AT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 214 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~-------~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.|.-+....+..+.+.|+.++|...+..-.+.+. ... .. ...|.++.+.|++..|++.|....+.-.
T Consensus 259 --~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 259 --LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred --hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999888766552 111 11 5677889999999999998887776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=81.40 Aligned_cols=67 Identities=33% Similarity=0.424 Sum_probs=64.4
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCC
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAAKNCFNLALSKGP 130 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~ 130 (331)
.+..|..+|.++...|+| ++|+.+|.++++++|+++.+++++|.+|...| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~-~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 467899999999999998 99999999999999999999999999999999 79999999999999988
|
... |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=105.93 Aligned_cols=139 Identities=24% Similarity=0.325 Sum_probs=124.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...|...+..+...+. .++|..++.++-.++|..+..|+..|.++...|++.+|...|..++.++|++ .....+|.++
T Consensus 650 ~~lwllaa~~~~~~~~-~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGN-DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456677777777787 4999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
...|. ....+....+..+++++|.++++|+.+|.++... |+.++|.++|+.++.+. +.+|.
T Consensus 729 le~G~------~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~---------Gd~~~Aaecf~aa~qLe--~S~PV 789 (799)
T KOG4162|consen 729 LELGS------PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL---------GDSKQAAECFQAALQLE--ESNPV 789 (799)
T ss_pred HHhCC------cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------cchHHHHHHHHHHHhhc--cCCCc
Confidence 99985 3455566699999999999999999999999999 99999999999999855 66653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=109.87 Aligned_cols=202 Identities=10% Similarity=-0.028 Sum_probs=135.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---------
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--------- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------- 129 (331)
..+....++..+...+...+++ ++|+..+..+++..|+...+++.+|.++.+.+++..+... +++...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~-deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLT-DEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 3455666677777777777776 7777777777777777777777777777777666555444 333332
Q ss_pred ----------CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 130 ----------PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 130 ----------~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
+++ .+++.+|.||..+| +.++|...|+++++.+|+++.+.+++|..|... +
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g--------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~----------d 164 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLN--------ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE----------D 164 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----------h
Confidence 222 46667777777766 377777777777777777777777777776642 5
Q ss_pred HHHHHHHHHHHHhch------------------hcCCChhH--------HhhHH------------HHHHHhhcHHHHHH
Q 020060 199 LLQSLKAYQNAEKDE------------------RMKSNPDL--------YFNCA------------TVNKYLENYERALS 240 (331)
Q Consensus 199 ~~~A~~~~~~al~~~------------------~~~~~~~~--------~~~la------------~~~~~~g~~~~A~~ 240 (331)
+++|+.++.+|+... ..|.+.+. .-.++ ..|...+++++++.
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 666666666665411 11333322 12223 67788899999999
Q ss_pred HHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 241 GFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 241 ~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+++.++..+|++..+ ..+..++. +++.. ...+.+.+++-.+
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l 286 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDI 286 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcc
Confidence 999999999999887 88888876 44433 5555555555433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=97.17 Aligned_cols=209 Identities=13% Similarity=0.190 Sum_probs=146.8
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 132 (331)
...+..+...|..|...++| ++|..+|.++....-. -+.++...|.+|... ++++|+.+|++++.+....
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~-~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDW-EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 35567777889999999998 9999999999775321 245677777777665 9999999999999875332
Q ss_pred -----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 133 -----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 133 -----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
..+..+|.++... .+++++|+++|++|++..... ...+..+|.++... |+|++
T Consensus 110 ~~~aA~~~~~lA~~ye~~-------~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l---------~~y~~ 173 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQ-------LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL---------GRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHHHCCT-------T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---------T-HHH
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh---------CCHHH
Confidence 4556677776655 136999999999999864322 34567889999988 99999
Q ss_pred HHHHHHHHHhchhc-CC-Ch---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHH-----HHHH
Q 020060 202 SLKAYQNAEKDERM-KS-NP---DLYFNCATVNKYLENYERALSGFEASALKDPSLNAT---EEVQMMVNL-----LDKI 268 (331)
Q Consensus 202 A~~~~~~al~~~~~-~~-~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~l~~~~~~-----l~~~ 268 (331)
|+..|++....... +. .. ..++..+.|+...||+..|...+++....+|..... .-+..++.. ...+
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999873211 11 11 336788889999999999999999999999976553 222222222 2345
Q ss_pred HHHHHhhhhhhhHHHHHhh
Q 020060 269 ENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~~~ 287 (331)
..++..|....+|++....
T Consensus 254 ~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 254 TEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp HHHCHHHTTSS---HHHHH
T ss_pred HHHHHHHcccCccHHHHHH
Confidence 6677788888887776544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-09 Score=90.17 Aligned_cols=81 Identities=16% Similarity=0.086 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~ 276 (331)
++...=+...++.++ ..|++|..+..+|..+.+.+.+.+|..+|+.+++..|+......++.++..+|+..+|...+.
T Consensus 308 ~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 308 GDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 444444444455555 458899999999999999999999999999999999998888999999999999999999998
Q ss_pred hhh
Q 020060 277 KTK 279 (331)
Q Consensus 277 ~a~ 279 (331)
+++
T Consensus 386 e~L 388 (400)
T COG3071 386 EAL 388 (400)
T ss_pred HHH
Confidence 888
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-09 Score=98.38 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=136.1
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
|........+|..+...|-...|+..|++. ..|.....+|..+|+ ..+|..+..+-++ .|+++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~--------~~kaeei~~q~le-k~~d~~ 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQ--------HGKAEEINRQELE-KDPDPR 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcc--------cchHHHHHHHHhc-CCCcch
Confidence 455667788999999999999999999986 456666777777763 7788888888887 566677
Q ss_pred hHHHHHHHHHhhhhhc-----------C--------CCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 176 SWYNLGNACLTSFFVT-----------G--------SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~-----------~--------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
.|..+|.+....-+-. + -..+++|+++..+++.+++.+ |.....|+.+|.+..+.+++.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhH
Confidence 7776665543210000 0 002389999999999999966 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 237 RALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.|..+|..+..++|++..+ .+++.++..+++-.+|...+.+|.+-+
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999 999999999999999988777777544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-11 Score=78.30 Aligned_cols=67 Identities=25% Similarity=0.543 Sum_probs=63.6
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh-cHHHHHHHHHHHHhcCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE-NYERALSGFEASALKDP 250 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 250 (331)
++..|..+|.++... |++++|+.+|.++++.+ |+++.+++++|.++..+| ++.+|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~---------~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ---------GDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT---------THHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 577899999999999 99999999999999965 999999999999999999 89999999999999998
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-10 Score=100.22 Aligned_cols=149 Identities=13% Similarity=0.053 Sum_probs=116.2
Q ss_pred CCCcHHHH--HHHHHHHHHhCC---hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 95 NPSLADAW--LCLGSCIWKKGD---LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 95 ~p~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
.|.+..+| +..|.-|...++ +..|+.+|+++++++|++ .++..++.++............+...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34555544 556666665544 778999999999999998 677777776654322111122346777777778766
Q ss_pred C--CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 169 L--DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 169 ~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
+ +|..+.++..+|..+... |++++|...+++++.++ | +..+|..+|.++...|++++|...|++|+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~---------g~~~~A~~~l~rAl~L~--p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVK---------GKTDEAYQAINKAIDLE--M-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred cccCcCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 777788899999988877 99999999999999976 7 57899999999999999999999999999
Q ss_pred hcCCCCcHH
Q 020060 247 LKDPSLNAT 255 (331)
Q Consensus 247 ~~~~~~~~~ 255 (331)
.++|.++..
T Consensus 481 ~L~P~~pt~ 489 (517)
T PRK10153 481 NLRPGENTL 489 (517)
T ss_pred hcCCCCchH
Confidence 999998864
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-10 Score=94.78 Aligned_cols=168 Identities=15% Similarity=0.072 Sum_probs=129.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhH--HHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQL--SML 141 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l--~~~ 141 (331)
..+....|.++...|++ ++|+..+.+. .+.++......++...++++.|.+.++..-+.+.+. .+..+ +++
T Consensus 102 ~~~~~~~A~i~~~~~~~-~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-~l~qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDY-EEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS-ILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHH-HHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH-HHHHHHHHHH
Confidence 34556677888888997 8888877654 567788888899999999999999999987776654 34444 444
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
....|. +.+.+|..+|++..+..+.++..++.++.+++.+ |+|++|...+.+++..+ |.++++
T Consensus 175 ~l~~g~------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~---------~~~~eAe~~L~~al~~~--~~~~d~ 237 (290)
T PF04733_consen 175 NLATGG------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL---------GHYEEAEELLEEALEKD--PNDPDT 237 (290)
T ss_dssp HHHHTT------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC---------T-HHHHHHHHHHHCCC---CCHHHH
T ss_pred HHHhCc------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhc--cCCHHH
Confidence 444442 3588999999998888888888999999999988 99999999999998855 999999
Q ss_pred HhhHHHHHHHhhcH-HHHHHHHHHHHhcCCCCcHH
Q 020060 222 YFNCATVNKYLENY-ERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 222 ~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~ 255 (331)
+.|++.+...+|+. +.+.+++.+....+|+++..
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999988 66777888888889998754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-09 Score=82.54 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=100.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.+..++..++.+|..|-+.|-+ .-|...|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.. -++.+
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~-~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHH-HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 6678999999999999999997 999999999999999999999999999999999999999999999999998 78888
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
.|..+...| ++.-|.+.+.+-.+.+|++|.
T Consensus 139 Rgi~~YY~g--------R~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 139 RGIALYYGG--------RYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cceeeeecC--------chHhhHHHHHHHHhcCCCChH
Confidence 888877665 699999999999999999874
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=92.07 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
+.-+.-++..+..+|++++.|..||.+|+..|+++.|...|.+++++.|++ ..+..+|.++..... .....++.
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-----~~~ta~a~ 213 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-----QQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----CcccHHHH
Confidence 456677888888999999999999999999999999999999999999999 888889999887652 24577899
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
..+++++..+|.+..+.+.||..++.. |+|.+|+..++..++..
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~---------g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQ---------GDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 99999999999999853
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-09 Score=103.03 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=86.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh----cCCChHHHhh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS----KGPNKKILCQ 137 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~ 137 (331)
...|..+-..|...|++ ++|+..|.+.... .|+ ...|..+...|.+.|++++|...|.+... +.|+...+..
T Consensus 507 vvTynaLI~gy~k~G~~-eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQV-AKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 34555555566666665 6666666665443 232 45566666666666666666666666643 2344444555
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLD-VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
+...+.+.| ++++|.+.|+...+.+ +.+...|..+...|... |++++|+..|.+.......|
T Consensus 585 LI~ay~k~G--------~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~---------G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 585 LMKACANAG--------QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK---------GDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHHHHHHCC--------CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCC
Confidence 555555444 3566666666655543 23444555555555555 55555555555554432122
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
+...|..+...+...|++++|...|....+
T Consensus 648 -D~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 648 -DEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 223344444444444444444444444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-09 Score=100.70 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=125.4
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh----------HHHHHHHHHH
Q 020060 93 KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN----------QAEIVEESIQ 161 (331)
Q Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~----------~~~~~~~A~~ 161 (331)
..+|.+..+|..|...+...+++++|+..++.+++..|+. .+++.+|.++...+..... ...++ .+++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence 3478999999999999999999999999999999999999 8888899988877653221 22234 7778
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHH
Q 020060 162 HAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 162 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 241 (331)
++...+...+.+..+++.+|.||-.+ |+.++|...|+++++.+ |.|+.+..++|..|... +.++|..+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~---------g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKL---------NENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 88777777899999999999999999 99999999999999966 99999999999999999 99999999
Q ss_pred HHHHHhc
Q 020060 242 FEASALK 248 (331)
Q Consensus 242 ~~~al~~ 248 (331)
+.+|+..
T Consensus 172 ~~KAV~~ 178 (906)
T PRK14720 172 LKKAIYR 178 (906)
T ss_pred HHHHHHH
Confidence 9999853
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-10 Score=82.10 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=94.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~ 136 (331)
+..++.+|..+...|++ ++|+..|.+++..+|++ +.+++.+|.++...|++++|+.+|++++...|++ .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDY-ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 35688999999999998 99999999999998876 5789999999999999999999999999998875 5788
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
.+|.++..+| ++++|+.++.++++..|++..+.
T Consensus 81 ~~~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 81 KLGMSLQELG--------DKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHhC--------ChHHHHHHHHHHHHHCcCChhHH
Confidence 9999999876 59999999999999999886554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=93.57 Aligned_cols=164 Identities=16% Similarity=0.100 Sum_probs=130.1
Q ss_pred HHHHHHHHHhCC---hhHHHHHHHHHH---hcCCCh-HHHhhHHHHHHHhcc-CchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 103 LCLGSCIWKKGD---LPAAKNCFNLAL---SKGPNK-KILCQLSMLERSMAQ-GSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 103 ~~lg~~~~~~g~---~~~A~~~~~~al---~~~~~~-~~~~~l~~~~~~~g~-~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
+..|..+...+. .+.|+.+|.+++ .++|.. .++..++.+++..-. ...+......+|....++|++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 666666655443 467888888998 888888 778888888775511 011134568899999999999999999
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.++..+|.+.... ++++.|...|++++.++ |+.+.+|+..|.+....|+.++|...++++++++|.-..
T Consensus 339 ~a~~~~g~~~~~~---------~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 339 KILAIMGLITGLS---------GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHhh---------cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 9999999999888 89999999999999976 999999999999999999999999999999999998766
Q ss_pred H--HHHHHHHHHHHHHHHHHHhhhh
Q 020060 255 T--EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 255 ~--~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
+ ..+..-.......+++++.|-+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCCchhhhHHHHhh
Confidence 5 3333213444556667765544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=87.08 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+.+++.+|.++...|++++|+.+|+++++..|+. ..+..+|.++..+| ++++|+..+++++...|.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCccc
Confidence 34556666666666666666666666666655432 45566666666555 3666666666666666666
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+..+..+|.++... |+...+...++.++ ..+.+|..++++++..+|++
T Consensus 106 ~~~~~~lg~~~~~~---------g~~~~a~~~~~~A~----------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 PSALNNIAVIYHKR---------GEKAEEAGDQDEAE----------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHc---------CChHhHhhCHHHHH----------------------HHHHHHHHHHHHHHhhCchh
Confidence 66666666666655 55554444444333 23556666666666666665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=75.60 Aligned_cols=99 Identities=26% Similarity=0.408 Sum_probs=88.1
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+++.+|.++...| ++++|+..++++++..|.++.++..+|.++... +++++|+..+++++...
T Consensus 2 ~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 2 ALLNLGNLYYKLG--------DYDEALEYYEKALELDPDNADAYYNLAAAYYKL---------GKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHHh--------cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCC
Confidence 4677888888665 599999999999999999989999999999988 99999999999999855
Q ss_pred hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 214 RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 214 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|.++..+..+|.++...|++++|..++.+++...|+
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 65 --PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred --CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 888889999999999999999999999999988774
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=85.42 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHH
Q 020060 82 KDAEDHLSKAVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..+...+.+.++..+.. ..+++.+|.++...|++++|+..|++++.+.|+. .++.++|.++...| +
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--------~ 87 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--------E 87 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------C
Confidence 44444454444444433 5566777777777777777777777777665543 36677777777665 3
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+++|+.++++++.++|..+..+.++|.++...
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=84.54 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=95.3
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
....+..++.+|..+...|++ ++|+.+|+++++..|+. +.++..+|.++...|++++|+.++.+++...|.+ ..+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEY-AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 346677899999999999998 99999999999887653 5789999999999999999999999999999988 788
Q ss_pred hhHHHHHHHhccCch------hHHHHHHHHHHHHHHHhcCCCCC
Q 020060 136 CQLSMLERSMAQGSE------NQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~------~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
..+|.++..+|.... .....+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 889999988875322 13344778888888888888765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=99.43 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=121.3
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc--CCChHHHhhHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--GPNKKILCQLSMLE 142 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~ 142 (331)
.+..+-..|...|++ ++|.+.|++..+.. +.+...|..+...|.+.|++++|...|.+..+. .|+...+..+...+
T Consensus 581 TynaLI~ay~k~G~l-deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 581 TVGALMKACANAGQV-DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444455556666664 66666666666554 334556666666666666666666666666554 34445555555566
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLD-VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
...| ++++|.+++.+..+.. +.+..+|..+...|... |++++|...|++...... ..+...
T Consensus 660 ~k~G--------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~---------G~~eeA~~lf~eM~~~g~-~Pdvvt 721 (1060)
T PLN03218 660 GHAG--------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA---------KNWKKALELYEDIKSIKL-RPTVST 721 (1060)
T ss_pred HhCC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCC-CCCHHH
Confidence 5554 4777777777776643 23456677777777777 777788777777654321 234556
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 222 YFNCATVNKYLENYERALSGFEASALK--DPSLNATEEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
|..+...|.+.|++++|...|++.... .|+......+-..+...|++++|.+.+.+..
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777778888888888888776543 4444333444566666777777765555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=74.16 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=59.7
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.+|..+...|+| ++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDY-DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHH-HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999998 999999999999999999999999999999999999999999999999975
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=76.16 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=90.5
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
+++.+|..+...|++ ++|+..+.++++..|.+..++..+|.++...|++++|+.+|++++...|.+ ..+..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDY-DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 577899999999998 999999999999999999999999999999999999999999999999988 788899999997
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
.| ++++|...+.++++..|.
T Consensus 81 ~~--------~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LG--------KYEEALEAYEKALELDPN 100 (100)
T ss_pred HH--------hHHHHHHHHHHHHccCCC
Confidence 75 699999999999988773
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-09 Score=84.92 Aligned_cols=125 Identities=11% Similarity=0.030 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
.+.-+.-++..+..+|++ ..|..||.+|+.+| ++..|...|.+++++.|++++.+..+|.++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~--------~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a----- 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALG--------RASDALLAYRNALRLAGDNPEILLGLAEALYYQA----- 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----
Confidence 556677788889999999 99999999999886 5999999999999999999999999999988661
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+.....++...++++++.+ |.+..+.+.+|..++..|+|.+|...++..+...|.+...
T Consensus 205 -~~~~ta~a~~ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 205 -GQQMTAKARALLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred -CCcccHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 2356688999999999965 9999999999999999999999999999999998876654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-09 Score=90.98 Aligned_cols=163 Identities=10% Similarity=-0.005 Sum_probs=134.6
Q ss_pred HHHHhhhhhhccccc--HHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHh---------CChhHHHHHHHHHHhcCCC
Q 020060 66 YEYLKGKILDVVPEY--RKDAEDHLSKAV---KLNPSLADAWLCLGSCIWKK---------GDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~--~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~ 131 (331)
-++.+|......+.- ...|+.+|.+++ .++|+.+.++..++.||+.. .+..+|...-+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 446777776554421 367999999999 99999999999999999865 2356789999999999999
Q ss_pred h-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 132 K-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 132 ~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+ .++..+|.+....| +++.|...|++|+.++|+.+.+|+..|.+.... |+.++|++.+++++
T Consensus 337 Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~---------G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSG--------QAKVSHILFEQAKIHSTDIASLYYYRALVHFHN---------EKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHh
Confidence 9 89999999988776 499999999999999999999999999999988 99999999999999
Q ss_pred hchhcCCChhHHhhHHHH-HHHhhcHHHHHHHHHHHHh
Q 020060 211 KDERMKSNPDLYFNCATV-NKYLENYERALSGFEASAL 247 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 247 (331)
+++ |....+-...-.+ .+.....++|++.|-+-.+
T Consensus 400 rLs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 400 QLE--PRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred ccC--chhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 966 8876664443344 4555678888888866443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=83.09 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHh
Q 020060 113 GDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLT 186 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 186 (331)
+++..+...+...++..+.. ..++.+|.++...| ++++|+..|++++.+.|+. +.+|.++|.++..
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g--------~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEG--------EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 34666666676665555554 67788999999776 4999999999999887663 4589999999999
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH-------HhhcHH-------HHHHHHHHHHhcCCCC
Q 020060 187 SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK-------YLENYE-------RALSGFEASALKDPSL 252 (331)
Q Consensus 187 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~~~~ 252 (331)
. |++++|+..+++++... |.....+.++|.++. .+|+++ +|..+|++++..+|.+
T Consensus 85 ~---------g~~~eA~~~~~~Al~~~--~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 85 N---------GEHTKALEYYFQALERN--PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred c---------CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9 99999999999999955 999999999999998 677766 5566666777778765
Q ss_pred c
Q 020060 253 N 253 (331)
Q Consensus 253 ~ 253 (331)
.
T Consensus 154 ~ 154 (168)
T CHL00033 154 Y 154 (168)
T ss_pred H
Confidence 4
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=102.19 Aligned_cols=185 Identities=11% Similarity=0.021 Sum_probs=117.1
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc--CCChHHHhhHHHHHHHhc
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--GPNKKILCQLSMLERSMA 146 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g 146 (331)
.+...|...|++ ++|...|++..+ .+..+|..+...|...|+.++|+..|++..+. .|+...+..+...+...|
T Consensus 365 ~Li~~y~k~G~~-~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 365 ALVDLYSKWGRM-EDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHCCCH-HHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 333444444453 555555544322 13345566666666666666666666665443 344444444555555444
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
.+++|.++|+...+..+- +...|..+..+|... |++++|.+.+++.- ...+...|..
T Consensus 441 --------~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~---------G~~~eA~~~~~~~~----~~p~~~~~~~ 499 (697)
T PLN03081 441 --------LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE---------GLLDEAYAMIRRAP----FKPTVNMWAA 499 (697)
T ss_pred --------cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc---------CCHHHHHHHHHHCC----CCCCHHHHHH
Confidence 477777777776643222 234566667777766 88888887776542 1234456888
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
+...+...|+++.|...+++.+.+.|++... ..+..++...|++++|.+.+.+-
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888899999999999999999987766 77888899999998888665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=77.94 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC-
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD- 173 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~- 173 (331)
++.++.+|..+...|++++|+..|.+++...|++ .+++.+|.++...| ++++|+..+++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHCCCCC
Confidence 4678999999999999999999999999999875 57888999999776 5999999999999998875
Q ss_pred --chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 174 --GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 174 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+.++..+|.++... |++++|+..+++++... |+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~--p~~~~~ 112 (119)
T TIGR02795 74 KAPDALLKLGMSLQEL---------GDKEKAKATLQQVIKRY--PGSSAA 112 (119)
T ss_pred cccHHHHHHHHHHHHh---------CChHHHHHHHHHHHHHC--cCChhH
Confidence 57899999999998 99999999999999854 877654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-08 Score=81.80 Aligned_cols=167 Identities=11% Similarity=0.010 Sum_probs=132.2
Q ss_pred CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 97 SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
..+..++..|..+...|++++|+..|++++...|.. .+.+.+|.+++..+ ++++|+..+++.++..|+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~--------~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--------DLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCcC
Confidence 467788999999999999999999999999999987 55688999999886 599999999999999988
Q ss_pred Cc---hhHHHHHHHHHhhh---------hhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----------------Hh
Q 020060 173 DG---NSWYNLGNACLTSF---------FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----------------YF 223 (331)
Q Consensus 173 ~~---~~~~~l~~~~~~~~---------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~ 223 (331)
++ .+++.+|.++.... ......++....+|+..|++.++ .-|++.-+ -+
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 75 46788888754331 01122244556789999999998 44776422 35
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHH
Q 020060 224 NCATVNKYLENYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 224 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~~a~~ 273 (331)
..|..|.+.|.|..|+.-++.+++..|+.+.. ..+..++..+|..++|.+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 77888999999999999999999999987763 555666777777766653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.7e-09 Score=78.48 Aligned_cols=124 Identities=22% Similarity=0.190 Sum_probs=103.2
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSM 140 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~ 140 (331)
+.........++. ..+...+.+.+.-+|+. ..+.+.+|.+++..|++++|...|++++...|+. .+...++.
T Consensus 15 y~~~~~~~~~~~~-~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQALQAGDP-AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333344457885 88888899999999988 5678889999999999999999999999988665 56778999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
++...| ++++|+..++. +...+-.+.++..+|.++... |++++|+..|++++
T Consensus 94 ~~~~~~--------~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~---------g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQG--------QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ---------GDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcC--------CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHhC
Confidence 999876 59999999966 444555677888999999999 99999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-08 Score=89.04 Aligned_cols=188 Identities=14% Similarity=0.123 Sum_probs=111.9
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHH
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQA 153 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~ 153 (331)
+...++| ++|.....+.+...|++..+.+..-.+..+.++|++|+...++-......+...+..+.|.++++
T Consensus 22 ~~~~~e~-e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln------- 93 (652)
T KOG2376|consen 22 HGKNGEY-EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN------- 93 (652)
T ss_pred hccchHH-HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc-------
Confidence 3445555 66666666666666666666666666666666666665333322221222222345555555553
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch--------------------
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-------------------- 213 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------------- 213 (331)
..++|+..+. -.++.+..+....|.+++.+ |+|++|+..|+..++.+
T Consensus 94 -k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl---------~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 94 -KLDEALKTLK---GLDRLDDKLLELRAQVLYRL---------ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred -cHHHHHHHHh---cccccchHHHHHHHHHHHHH---------hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 3556666555 23333444555555555555 66666666666554311
Q ss_pred --------hcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc--------CCC--------CcHHHHHHHHHHHHHHH
Q 020060 214 --------RMK-SNPDLYFNCATVNKYLENYERALSGFEASALK--------DPS--------LNATEEVQMMVNLLDKI 268 (331)
Q Consensus 214 --------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~--------~~~~~~l~~~~~~l~~~ 268 (331)
..| ++-+.+||.|.++...|+|.+|++.+++++.+ +.+ +.....++.++..+|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 112 24466899999999999999999999999543 111 01127788889999999
Q ss_pred HHHHHhhhhhhhHH
Q 020060 269 ENLLKGHAKTKRVA 282 (331)
Q Consensus 269 ~~a~~~~~~a~~l~ 282 (331)
.+|...|....+..
T Consensus 241 ~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhc
Confidence 99998777666543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-08 Score=96.23 Aligned_cols=209 Identities=9% Similarity=-0.019 Sum_probs=153.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
..+++|.++++.++. .....|..+...|...|++ ++|+..|.+..... .-+..++..+...+...|++++|
T Consensus 273 g~~~~A~~vf~~m~~-------~~~vt~n~li~~y~~~g~~-~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 273 GDIEDARCVFDGMPE-------KTTVAWNSMLAGYALHGYS-EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred CCHHHHHHHHHhCCC-------CChhHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 456788888887763 2456788888889999997 99999998886642 22456788888888889999999
Q ss_pred HHHHHHHHhcCC--ChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 119 KNCFNLALSKGP--NKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 119 ~~~~~~al~~~~--~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
...+...++... +...+..+...|.+.| ++++|.+.|++..+ .+..+|+.+...|...
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G--------~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~--------- 404 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWG--------RMEDARNVFDRMPR---KNLISWNALIAGYGNH--------- 404 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCC--------CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHc---------
Confidence 998888887652 2266677888888766 48899999887654 3567888888888888
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK---DPSLNATEEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~l~~~~~~l~~~~~a~~ 273 (331)
|+.++|+..|++..+....| +...+..+...+...|..++|..+|+...+. .|+......+...+.+.|++++|.+
T Consensus 405 G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 88999999998887643223 3445677777788888888888888887653 3433333566677777777777765
Q ss_pred hhhh
Q 020060 274 GHAK 277 (331)
Q Consensus 274 ~~~~ 277 (331)
.+.+
T Consensus 484 ~~~~ 487 (697)
T PLN03081 484 MIRR 487 (697)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-09 Score=94.18 Aligned_cols=139 Identities=16% Similarity=0.070 Sum_probs=111.1
Q ss_pred hhhHHHHHhhhhhhccc---ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--------ChhHHHHHHHHHHhc--
Q 020060 62 QRATYEYLKGKILDVVP---EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG--------DLPAAKNCFNLALSK-- 128 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~-- 128 (331)
..+.-++..|..+...+ ++ ..|+.+|+++++++|+++.++-.++.+|.... +...+.....+++.+
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~-~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSL-NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 34555777887776544 35 78999999999999999999999999886642 234566666676664
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
+|.. .++..+|......| ++++|...+++|+.++| +..+|..+|.++... |++++|++.|+
T Consensus 416 ~~~~~~~~~ala~~~~~~g--------~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~---------G~~~eA~~~~~ 477 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKG--------KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK---------GDNRLAADAYS 477 (517)
T ss_pred CcCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc---------CCHHHHHHHHH
Confidence 4444 56666777766555 69999999999999999 578999999999998 99999999999
Q ss_pred HHHhchhcCCChhH
Q 020060 208 NAEKDERMKSNPDL 221 (331)
Q Consensus 208 ~al~~~~~~~~~~~ 221 (331)
+|+.++ |.++..
T Consensus 478 ~A~~L~--P~~pt~ 489 (517)
T PRK10153 478 TAFNLR--PGENTL 489 (517)
T ss_pred HHHhcC--CCCchH
Confidence 999966 998865
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=70.94 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+.+|..+... |++++|+..|+++++.. |.++.+++.+|.++..+|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~---------g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQ---------GDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHC---------THHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHc---------CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3578888888 99999999999999955 99999999999999999999999999999999999874
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-10 Score=92.29 Aligned_cols=211 Identities=10% Similarity=0.015 Sum_probs=151.9
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+-..|+-|+.+|.| ++||.||.+++..+|.++..+.+.|..|++...|..|..-+..++.++... .++...+.+-..+
T Consensus 100 iKE~GN~yFKQgKy-~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKY-EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccch-hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45679999999999 999999999999999999999999999999999999999999999999887 8899999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh------hhhcCCC--------------------ChhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS------FFVTGSW--------------------DHSKL 199 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------~~~~~~~--------------------~~~~~ 199 (331)
| +..+|.+.++.++++.|++.+.--.++.+-.-. -...|.. ..|.+
T Consensus 179 g--------~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~ 250 (536)
T KOG4648|consen 179 G--------NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMR 250 (536)
T ss_pred h--------hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhcc
Confidence 6 599999999999999998765544333321100 0000100 00222
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
+.++.++-+.+.. ...+..+..+ +..+.+..++..|+.-..++...+|..... ...+.+...+|...++...++.+
T Consensus 251 ~~~i~~~~~~~A~--~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 251 SVPVVDVVSPRAT--IDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred ccceeEeeccccc--cCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 2233333222221 1122222233 667777788888888888888888876555 66666777778888888888887
Q ss_pred hhHHHHHhhcc
Q 020060 279 KRVASLASSLA 289 (331)
Q Consensus 279 ~~l~~~~~~~~ 289 (331)
..+.+-.....
T Consensus 328 ~~~~P~~~~~~ 338 (536)
T KOG4648|consen 328 VKVAPAVETPK 338 (536)
T ss_pred eeeccccccch
Confidence 77766544433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.7e-08 Score=80.01 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=154.5
Q ss_pred ccchhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-----HHHHHHHH
Q 020060 32 DDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-----ADAWLCLG 106 (331)
Q Consensus 32 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg 106 (331)
....++..+.+.-++..+...... .+.......+.++++.+...-+| .+++.+-+..+.+.... ..+...+|
T Consensus 53 ~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f-~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~ 129 (518)
T KOG1941|consen 53 HSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEF-HKTISYCKTCLGLPGTRAGQLGGQVSLSMG 129 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence 335556666666666666654421 02334556778888888888897 88999888888775433 35777899
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------ 173 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------ 173 (331)
..+..++.+++++++|++++.+...+ .+...+|..+..+ +++++|.-+..+|.++-...
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l--------~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL--------KDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH--------HhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 99999999999999999999876443 5677889888866 57999999999998764322
Q ss_pred ----chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 174 ----GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 174 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
..+.+.++..+... |..-+|.++.+.+.++.....|. ....-+|.+|...|+.+.|..-|++|
T Consensus 202 ~kyr~~~lyhmaValR~~---------G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLL---------GRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHHHh---------cccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23567788888888 99999999999998854334443 44688999999999999999999999
Q ss_pred HhcCCCCcHH
Q 020060 246 ALKDPSLNAT 255 (331)
Q Consensus 246 l~~~~~~~~~ 255 (331)
+.....-.+.
T Consensus 273 m~~m~~~gdr 282 (518)
T KOG1941|consen 273 MGTMASLGDR 282 (518)
T ss_pred HHHHhhhhhh
Confidence 9876654443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-10 Score=76.20 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 154 EIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
+++++|+.+++++++.+|. +...++.+|.++... |++++|+..+++ .+.+ +.++..++.+|.++..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~---------~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ---------GKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT---------THHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC---------CCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHH
Confidence 4588888888888888874 456777788888888 888888888888 5533 6777777788888888
Q ss_pred hhcHHHHHHHHHHH
Q 020060 232 LENYERALSGFEAS 245 (331)
Q Consensus 232 ~g~~~~A~~~~~~a 245 (331)
+|++++|+..|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 88888888888764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.7e-09 Score=74.44 Aligned_cols=95 Identities=19% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC---
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--- 172 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--- 172 (331)
.+++.+|.++...|+.++|+.+|++++....+. .++..+|..+..+| ++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCccc
Confidence 456777777777777777777777777765433 56677777777776 377777777777777666
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+......++.++... |+.++|+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~---------gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNL---------GRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHH
Confidence 556666677777766 777777777776664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=76.21 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=65.6
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+.++.-+..+..|.-++..|++++|...|+-....+|.+ ..|..||.++..++ +|++|+..|..+..++++
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--------~y~~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--------QFQKACDLYAVAFTLLKN 103 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcccC
Confidence 344445566666666666666666666666666666666 66666666666443 466666666666666666
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+|...+..|.|++.+ |+.+.|..+|+.++.
T Consensus 104 dp~p~f~agqC~l~l---------~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 104 DYRPVFFTGQCQLLM---------RKAAKARQCFELVNE 133 (165)
T ss_pred CCCccchHHHHHHHh---------CCHHHHHHHHHHHHh
Confidence 666666666666666 666666666666664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=85.11 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred hHHHHHhhhhh-hcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHH
Q 020060 64 ATYEYLKGKIL-DVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~ 135 (331)
...+|..+..+ ...|+| ++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|.++++..|++ .++
T Consensus 142 e~~~Y~~A~~l~~~~~~y-~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQ-DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 46677777765 557898 99999999999999987 5899999999999999999999999999999986 889
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
+.+|.++..+| ++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g--------~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKG--------DTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999887 5999999999999999987643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-08 Score=75.94 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=96.4
Q ss_pred HHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHH
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGN 182 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 182 (331)
...++...+...+.+.+.-.|+. .+.+.+|.++...| ++++|...|+.++...|+. +.+...++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g--------~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG--------DYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 36788888888899999888877 56677888888776 5999999999999877554 357788899
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
++... |++++|+..++.. . ..+..+.++..+|.++...|++++|...|++++
T Consensus 94 ~~~~~---------~~~d~Al~~L~~~-~--~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQ---------GQYDEALATLQQI-P--DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHc---------CCHHHHHHHHHhc-c--CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99888 9999999999763 2 235667788899999999999999999999875
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=74.99 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=92.1
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
...+..|.-++..| ++++|...|+-....+|.++..|..||.++... ++|++|+..|..+...
T Consensus 38 e~iY~~Ay~~y~~G--------k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~---------k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 38 DGLYAHAYEFYNQG--------RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK---------KQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHc
Confidence 67777888888776 599999999999999999999999999999999 9999999999999986
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
. +++|...+..|.|+..+|+...|..+|..++. .|.+.
T Consensus 101 ~--~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 101 L--KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred c--cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 5 99999999999999999999999999999998 45544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=73.66 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred ccccHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHH
Q 020060 77 VPEYRKDAEDHLSKAVKLNPS--LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQA 153 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~ 153 (331)
.|+| +.|+.+++++++..|. +...++.+|.||+..|++++|+..+++ .+.+|.+ ...+.+|.++..+|
T Consensus 2 ~~~y-~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~------- 72 (84)
T PF12895_consen 2 QGNY-ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG------- 72 (84)
T ss_dssp TT-H-HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-------
T ss_pred CccH-HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC-------
Confidence 5787 9999999999999995 567788899999999999999999999 8888877 77788899999887
Q ss_pred HHHHHHHHHHHHH
Q 020060 154 EIVEESIQHAKEA 166 (331)
Q Consensus 154 ~~~~~A~~~~~~a 166 (331)
++++|+++++++
T Consensus 73 -~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 -KYEEAIKALEKA 84 (84)
T ss_dssp --HHHHHHHHHHH
T ss_pred -CHHHHHHHHhcC
Confidence 599999999875
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-07 Score=73.87 Aligned_cols=170 Identities=11% Similarity=0.034 Sum_probs=123.2
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K 133 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~ 133 (331)
...+..||..|......|+| ++|+..|+......|.. ..+...++.+++..++++.|+...++-+.+.|.+ -
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~-~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 31 NLPASELYNEGLTELQKGNY-EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 45677899999999999998 99999999999988865 5788999999999999999999999999999987 5
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhhhcCCCCh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~~~ 196 (331)
+++..|.+++..-+..........+|+..+++.++..|++.-+- ...|..|...
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr--------- 180 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR--------- 180 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 66677777664433333333457899999999999999875321 1234444444
Q ss_pred hhHHHHHHHHHHHHhchhcCCC---hhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSN---PDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
|.+..|+..++..++. -|+. .+++..+..+|..+|-.++|.+.-
T Consensus 181 ~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 181 GAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred cChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 6666666666666652 1222 244556666666666666665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-08 Score=81.65 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=113.9
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHh
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSM 145 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 145 (331)
+-.-+|.+++.+|+| ++|...|.-+...+.-+++.+.++|.|++..|.|.+|...-.++-+.--....++.++. ++
T Consensus 59 ~~lWia~C~fhLgdY-~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlah---kl 134 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDY-EEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAH---KL 134 (557)
T ss_pred HHHHHHHHHHhhccH-HHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH---Hh
Confidence 333467888888887 88888888877766666778888888888888888887665554221111133333333 23
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
+ -++-+-.|.+.++-. .+-...|+.+.... -.|.+|++.|.+++..+ |.....-.++
T Consensus 135 n---------dEk~~~~fh~~LqD~---~EdqLSLAsvhYmR---------~HYQeAIdvYkrvL~dn--~ey~alNVy~ 191 (557)
T KOG3785|consen 135 N---------DEKRILTFHSSLQDT---LEDQLSLASVHYMR---------MHYQEAIDVYKRVLQDN--PEYIALNVYM 191 (557)
T ss_pred C---------cHHHHHHHHHHHhhh---HHHHHhHHHHHHHH---------HHHHHHHHHHHHHHhcC--hhhhhhHHHH
Confidence 2 233334444444322 13345566665555 69999999999999855 7777888999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|.||+++.-|+-+...+.-.++..|+.+.+
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999999999998887
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.2e-08 Score=80.80 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=93.8
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh-----
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN----- 151 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~----- 151 (331)
.+| ..||+++..-.+.+|.+-.++..+|.||+...+|..|..||++.-.+.|.. ...+..++.+++-+.....
T Consensus 24 ~ry-~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 24 ARY-ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hhH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344 555555555555555555555555555555555555555555555555554 2222222222222110000
Q ss_pred ----------HHHHHHHHHHHH-------HHHhcCCC--CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 152 ----------QAEIVEESIQHA-------KEAITLDV--KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 152 ----------~~~~~~~A~~~~-------~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
+.=+.+.|+.+- +..++.-| +......+.|.+.+.. |+++.|+..|+.+++.
T Consensus 103 ~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke---------gqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 103 LLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE---------GQYEAAVQKFQAALQV 173 (459)
T ss_pred HhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc---------ccHHHHHHHHHHHHhh
Confidence 000111222111 11122223 4566777888888877 9999999999999984
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHh----cCCCCc
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASAL----KDPSLN 253 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~ 253 (331)
. ..+|.+-++++.++++.|+++.|+++....+. ..|...
T Consensus 174 s--GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 174 S--GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred c--CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 4 78888899999999999999999987666554 455543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-08 Score=82.75 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+......|..|++.|+|..|..-|++++..-......-. - ..+....+ -..++.
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-----e------------e~~~~~~~---------k~~~~l 261 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-----E------------EQKKAEAL---------KLACHL 261 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-----H------------HHHHHHHH---------HHHHhh
Confidence 344567899999999999999999999876543200000 0 00111111 123567
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
+++.|+..+ ++|.+|+.++.+++... |.|..+++..|.++..+|+|+.|...|+++++++|+|..+ ..
T Consensus 262 NlA~c~lKl---------~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 262 NLAACYLKL---------KEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHHHHHhh---------hhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 888888888 88888999999888855 8888888999999999999999999999999999988776 77
Q ss_pred HHHHHHHHHHHHHH
Q 020060 258 VQMMVNLLDKIENL 271 (331)
Q Consensus 258 l~~~~~~l~~~~~a 271 (331)
+..+.....++.+.
T Consensus 331 l~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 331 LIKLKQKIREYEEK 344 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.8e-08 Score=82.82 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=109.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---------------LADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+...-..|+.++..|+| ..|...|++++..-.. -..++.+++.||..+++|.+|+.+..++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~-~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKF-KLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHhhhHHHhhchH-HHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34455779999999998 9999999998875321 1347899999999999999999999999999
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH-HHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ-SLKAY 206 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-A~~~~ 206 (331)
+|.+ .++++.|.++..+| +++.|...|++++++.|.|..+...+..+-... .++.+ ..+.|
T Consensus 287 ~~~N~KALyRrG~A~l~~~--------e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~---------~~~~~kekk~y 349 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALG--------EYDLARDDFQKALKLEPSNKAARAELIKLKQKI---------REYEEKEKKMY 349 (397)
T ss_pred CCCchhHHHHHHHHHHhhc--------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 9999 99999999999887 499999999999999999999988888887766 54443 46667
Q ss_pred HHHHh
Q 020060 207 QNAEK 211 (331)
Q Consensus 207 ~~al~ 211 (331)
.+...
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=86.74 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=129.3
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLN--PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERS 144 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 144 (331)
...++..+...++- +.++.-++..+.-. +.++......|.++...|++++|+..+.+. .+-+.......++..
T Consensus 69 v~~la~y~~~~~~~-e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 69 VRLLAEYLSSPSDK-ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHHCTSTTH-HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccch-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHH
Confidence 34445444443442 55555555544332 234556667778888899999999888764 222666667778887
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
++ +++.|.+.++.+-+.+.+..-+....+++.+.. | .+++.+|...|+..... .+.++..++.
T Consensus 144 ~~--------R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~----g---~e~~~~A~y~f~El~~~--~~~t~~~lng 206 (290)
T PF04733_consen 144 MN--------RPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT----G---GEKYQDAFYIFEELSDK--FGSTPKLLNG 206 (290)
T ss_dssp TT---------HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH----T---TTCCCHHHHHHHHHHCC--S--SHHHHHH
T ss_pred cC--------CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----C---chhHHHHHHHHHHHHhc--cCCCHHHHHH
Confidence 75 699999999999888766544444444444444 1 14689999999997653 3678888999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
+|.++..+|+|++|...+.+++..+|+++.. .++..+...+|+..++..
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 9999999999999999999999999999988 888888888888855443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-07 Score=91.57 Aligned_cols=178 Identities=10% Similarity=0.016 Sum_probs=140.9
Q ss_pred hhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc--CCChHHHhhHHHHHHHhccCc
Q 020060 72 KILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--GPNKKILCQLSMLERSMAQGS 149 (331)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~ 149 (331)
..|...|+. ++|...|... +.+..+|..+...|...|+.++|+..|++..+. .|+...+..+-..+...|
T Consensus 532 ~~y~k~G~~-~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g--- 603 (857)
T PLN03077 532 DLYVRCGRM-NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG--- 603 (857)
T ss_pred HHHHHcCCH-HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC---
Confidence 556677886 8888888875 556788999999999999999999999988764 466655555556666555
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 150 ENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
.+++|..+|+...+..+- +...|..+..++... |++++|.+.+++.- . ..++..|..+-.
T Consensus 604 -----~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~---------G~~~eA~~~~~~m~---~-~pd~~~~~aLl~ 665 (857)
T PLN03077 604 -----MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA---------GKLTEAYNFINKMP---I-TPDPAVWGALLN 665 (857)
T ss_pred -----hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC---------CCHHHHHHHHHHCC---C-CCCHHHHHHHHH
Confidence 599999999998844332 346778888888888 99999999988752 1 334666777777
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 228 VNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
.+...|+.+.|....++.++++|++... ..++.++...|+++++.+..
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 8888899999999999999999999887 88888999999988887543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-06 Score=68.93 Aligned_cols=213 Identities=14% Similarity=0.186 Sum_probs=145.4
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP------SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL 135 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 135 (331)
+.+.++..-|+.|....+| ..|=..|.++-...- +-+..+...+.||.. ++.++|+.++++++++..+..-+
T Consensus 32 eAadl~~~Aan~yklaK~w-~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNW-SAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHH
Confidence 4455566666777777776 777777777765421 235566666777654 59999999999999998766333
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
..-+..+..++..++....++++|+.+|+++-+..... -..+...+..-..+ ++|.+|+..|++.
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l---------eqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL---------EQYSKAIDIYEQV 180 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 33444444555444555578999999999998754322 12333444444455 9999999999999
Q ss_pred HhchhcCCChh-------HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH---HHHHHHH-----HHHHHHHHHHHh
Q 020060 210 EKDERMKSNPD-------LYFNCATVNKYLENYERALSGFEASALKDPSLNAT---EEVQMMV-----NLLDKIENLLKG 274 (331)
Q Consensus 210 l~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~l~~~~-----~~l~~~~~a~~~ 274 (331)
.... -+++- .++.-|.|+....+.-.+...+++...++|..... .-+..+. .....+.+.++.
T Consensus 181 a~~s--~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 181 ARSS--LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred HHHh--ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 8733 44442 25777889999899999999999999999997763 2222222 233556666788
Q ss_pred hhhhhhHHHHHhh
Q 020060 275 HAKTKRVASLASS 287 (331)
Q Consensus 275 ~~~a~~l~~~~~~ 287 (331)
|...-+|+.....
T Consensus 259 fDsisrLD~W~tt 271 (288)
T KOG1586|consen 259 FDSISRLDQWKTT 271 (288)
T ss_pred hhccchHHHHHHH
Confidence 8888777665444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.1e-08 Score=79.19 Aligned_cols=159 Identities=21% Similarity=0.204 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
..+++.+++++...... .| .....+..+|.+|+...+| ..|-.+|.+...+.|........-+..++..+.+..|
T Consensus 23 d~ry~DaI~~l~s~~Er---~p-~~rAgLSlLgyCYY~~Q~f-~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 23 DARYADAIQLLGSELER---SP-RSRAGLSLLGYCYYRLQEF-ALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HhhHHHHHHHHHHHHhc---Cc-cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 35667888888765542 23 3344677899999999998 9999999999999999888888888888888888888
Q ss_pred HHHHHHHHhc----------------C--------------CC-h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 119 KNCFNLALSK----------------G--------------PN-K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 119 ~~~~~~al~~----------------~--------------~~-~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
+......... . |. + ....+.|.+.+ +.++++.|++-|+.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gClly--------kegqyEaAvqkFqa 169 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLY--------KEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheee--------ccccHHHHHHHHHH
Confidence 8776554321 0 10 0 12223333333 44679999999999
Q ss_pred HhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 166 AITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 166 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+++...-.+-.-++++.+++.. +++..|+.+....+... ..++|+
T Consensus 170 AlqvsGyqpllAYniALaHy~~---------~qyasALk~iSEIieRG-~r~HPE 214 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSS---------RQYASALKHISEIIERG-IRQHPE 214 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhh---------hhHHHHHHHHHHHHHhh-hhcCCc
Confidence 9999988899999999999998 99999999999888632 234444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-07 Score=89.93 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=51.2
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--CCCCchhHHHHHHHHH
Q 020060 108 CIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--DVKDGNSWYNLGNACL 185 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 185 (331)
.|.+.|+.++|...|+.. .|+...|..+...+...| +.++|++.|++..+. .|+ ..++..+-.++.
T Consensus 533 ~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G--------~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~ 600 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHG--------KGSMAVELFNRMVESGVNPD-EVTFISLLCACS 600 (857)
T ss_pred HHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHh
Confidence 344444444444444433 222234444444444333 355555555554442 222 223333333344
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
.. |.+++|..+|+...+......+...|..+..++.+.|++++|...+++
T Consensus 601 ~~---------g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 601 RS---------GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred hc---------ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44 555555555555542111112223455555555555555555555554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=69.60 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=97.3
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
+...+..++..|...+..|+| .+|++.|+......|.. ..+...+|.+|+..+++++|+..+++-++++|.+
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y-~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNY-EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 345567788999999999999 99999999999988764 6789999999999999999999999999999998
Q ss_pred HHHhhHHHHHHHhcc-------CchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 133 KILCQLSMLERSMAQ-------GSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~-------~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
.+++..|.+++.... ......+...+|...|++.++..|++..+
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 688889988887653 22223345889999999999999987543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=65.77 Aligned_cols=64 Identities=27% Similarity=0.400 Sum_probs=56.9
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
...|+| ++|+..|++++..+|++..+++.+|.+|...|++++|...+.+++..+|++ ..+..++
T Consensus 2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 457897 999999999999999999999999999999999999999999999999997 4444444
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-06 Score=69.74 Aligned_cols=200 Identities=22% Similarity=0.241 Sum_probs=154.2
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVK--LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.......+..+...+.+ ..+...+...+. ..+.....+...|..+...+++..++..+..++...+.. ......+.
T Consensus 59 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRL-EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccH-HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 45666778888888886 889999988887 678888899999999999999999999999999888776 44444444
Q ss_pred -HHHHhccCchhHHHHHHHHHHHHHHHhcCCC---CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 141 -LERSMAQGSENQAEIVEESIQHAKEAITLDV---KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 141 -~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
++...| +++.|...+.+++...| .....+...+..+... ++++.|+..+.+++... +
T Consensus 138 ~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~--~ 198 (291)
T COG0457 138 GALYELG--------DYEEALELYEKALELDPELNELAEALLALGALLEAL---------GRYEEALELLEKALKLN--P 198 (291)
T ss_pred HHHHHcC--------CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh---------cCHHHHHHHHHHHHhhC--c
Confidence 677665 49999999999988766 3445555556655555 89999999999999844 7
Q ss_pred C-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 217 S-NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 217 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
. ....+..++..+...+++..|...+..++...|..... ...+..+...+....+...+.++.+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 199 DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 7 67889999999999999999999999999999984444 5555555555556677666666555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.8e-07 Score=74.56 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=129.7
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN 151 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~ 151 (331)
+....+| ..|+..++-.+..+.... .....+|.|++..|+|++|+..|.-+...+.-+ ..+.+++.+.+.+|
T Consensus 32 fls~rDy-tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg----- 105 (557)
T KOG3785|consen 32 FLSNRDY-TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG----- 105 (557)
T ss_pred HHhcccc-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH-----
Confidence 3456788 889999998887765543 566778999999999999999999988755444 88999999999887
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
.|.+|.....++ |+++-....+-.+-... ++ ++-+-.|...+. +..+-...+|.+++.
T Consensus 106 ---~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl---------nd-Ek~~~~fh~~Lq-----D~~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 106 ---QYIEAKSIAEKA----PKTPLCIRLLFHLAHKL---------ND-EKRILTFHSSLQ-----DTLEDQLSLASVHYM 163 (557)
T ss_pred ---HHHHHHHHHhhC----CCChHHHHHHHHHHHHh---------Cc-HHHHHHHHHHHh-----hhHHHHHhHHHHHHH
Confidence 599998877654 55554444444443333 33 344555666553 233556789999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
.-.|.+|+..|++++.-+|+.... ..++.++.++.-++-+.
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence 999999999999999999998777 88899998888777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=77.77 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=89.7
Q ss_pred HHHhhHHHHH-HHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 020060 133 KILCQLSMLE-RSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 133 ~~~~~l~~~~-~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
...+..+..+ ...| ++++|+..|+..++..|++ +.+++.+|.+|+.. |++++|+..|++
T Consensus 143 ~~~Y~~A~~l~~~~~--------~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~---------g~~~~A~~~f~~ 205 (263)
T PRK10803 143 NTDYNAAIALVQDKS--------RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK---------GKKDDAAYYFAS 205 (263)
T ss_pred HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHH
Confidence 5566666654 3333 5999999999999999988 47999999999999 999999999999
Q ss_pred HHhch-hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 209 AEKDE-RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 209 al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+++.. ..|..+++++.+|.++..+|++++|...|+++++..|+...+
T Consensus 206 vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 206 VVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99733 123356889999999999999999999999999999998754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-06 Score=70.25 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=50.5
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHH-------------------------------hcCCCCcHH-HHHHHHHHHH
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASA-------------------------------LKDPSLNAT-EEVQMMVNLL 265 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~~~~~~~-~~l~~~~~~l 265 (331)
+|.+...++.-+...|+.++|.+..++++ +..|+++.. ..+|.++...
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 45555566666667777777776666655 456777777 8999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHh
Q 020060 266 DKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 266 ~~~~~a~~~~~~a~~l~~~~~ 286 (331)
+.+.+|.+.+..|....+...
T Consensus 342 ~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 342 KLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hHHHHHHHHHHHHHhcCCChh
Confidence 999999999888876655433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-07 Score=66.23 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=82.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---h-HHHhh
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN---K-KILCQ 137 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~-~~~~~ 137 (331)
.++|.+|.++...|+. ++|+.+|++++...... ..++..+|.++...|++++|+..+++++...|+ + .....
T Consensus 2 ~~~~~~A~a~d~~G~~-~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGRE-EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4688999999999996 99999999999975443 678999999999999999999999999999888 4 55566
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
++.++...| +.++|+..+-.++.
T Consensus 81 ~Al~L~~~g--------r~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLG--------RPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCC--------CHHHHHHHHHHHHH
Confidence 888888887 59999999887764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=76.81 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=95.1
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLS 139 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~ 139 (331)
.|..+.-++..|+| ..|...|..-++..|+. +++++.||.+++.+|+++.|...|..+.+-.|++ +.++.+|
T Consensus 144 ~Y~~A~~~~ksgdy-~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDY-AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 78999999999998 99999999999999975 7899999999999999999999999999999987 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
.+...+| +.++|...|++.++..|..+.+..
T Consensus 223 ~~~~~l~--------~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLG--------NTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhc--------CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999887 599999999999999998876543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=64.83 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=58.6
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+|...++| ++|+.++++++.++|+++..|..+|.++...|++++|+..|+++++..|++
T Consensus 2 ~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDY-EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5678889998 999999999999999999999999999999999999999999999999987
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-06 Score=66.00 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=102.2
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHH
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-LDVKDGNSWYNLGNACL 185 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~ 185 (331)
....+.=|.+.+..-..+.+...|+....+.++..+..+| ++.+|...|++++. +...++..+..++++.+
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elG--------r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELG--------RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhh--------hhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 3334444556666666666667777666677777777665 47777777777765 45566667777777777
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLL 265 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l 265 (331)
.. +++..|...+++..+.+..-..|+....+|.++...|.+.+|...|+.++...|+.......+..+..+
T Consensus 136 a~---------~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~q 206 (251)
T COG4700 136 AI---------QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQ 206 (251)
T ss_pred hh---------ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 76 777777777777776442234556677777777777777777777777777777765556677777777
Q ss_pred HHHHHHHHh
Q 020060 266 DKIENLLKG 274 (331)
Q Consensus 266 ~~~~~a~~~ 274 (331)
|+..++...
T Consensus 207 gr~~ea~aq 215 (251)
T COG4700 207 GRLREANAQ 215 (251)
T ss_pred cchhHHHHH
Confidence 766666533
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-06 Score=77.17 Aligned_cols=160 Identities=12% Similarity=0.067 Sum_probs=91.7
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
+..+.|.+..+.. ++|+..++ .+++.+.......|.+++++|+|++|...|+..++.+.++ +........-.
T Consensus 83 fEKAYc~Yrlnk~-Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--- 155 (652)
T KOG2376|consen 83 FEKAYCEYRLNKL-DEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--- 155 (652)
T ss_pred HHHHHHHHHcccH-HHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH---
Confidence 4455555555553 55555554 2333344445555555555555555555555555444333 11111111000
Q ss_pred cCchhHHHHHHHHHHH-HHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-----cCCC-
Q 020060 147 QGSENQAEIVEESIQH-AKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-----MKSN- 218 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~-~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~- 218 (331)
..+... ..+.+...|. +.+.+++.+.++... |+|.+|++.++++++.+. ...+
T Consensus 156 ----------~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~---------gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 156 ----------AAALQVQLLQSVPEVPEDSYELLYNTACILIEN---------GKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred ----------HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 000000 2222223333 445778888888888 999999999999954210 0111
Q ss_pred -------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 219 -------PDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 219 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
..+...++.++..+|+..+|...|...++.+|.+.
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 12378899999999999999999999998877654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=80.66 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=105.0
Q ss_pred hhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccC
Q 020060 70 KGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQG 148 (331)
Q Consensus 70 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~ 148 (331)
+-..+...+++ +.|+..+++..+.+|+ +...++.++...++..+|+..+++++...|.+ ..+...+..+...+
T Consensus 175 Ll~~l~~t~~~-~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-- 248 (395)
T PF09295_consen 175 LLKYLSLTQRY-DEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK-- 248 (395)
T ss_pred HHHHHhhcccH-HHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Confidence 34455567887 9999999999988875 56779999999999999999999999999988 77777888888665
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 149 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
+++.|+.+.++++...|.+-..|..|+.+|... |+++.|+..++.+
T Consensus 249 ------~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~---------~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 ------KYELALEIAKKAVELSPSEFETWYQLAECYIQL---------GDFENALLALNSC 294 (395)
T ss_pred ------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---------CCHHHHHHHHhcC
Confidence 599999999999999999999999999999999 9999999887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-07 Score=79.99 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=102.1
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
+-.++...++++.|+..|++..+.+|+. ...++.++...+ +-.+|+..+.+++...|.+...+...+..+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~--------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMN--------EEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcC--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455566788999999999999988874 444677777554 367999999999999999999999999999
Q ss_pred HhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 185 LTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
... ++++.|+...++++... |.+...|+.|+.+|..+|++++|+..+..+-
T Consensus 245 l~k---------~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSK---------KKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred Hhc---------CCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 988 99999999999999955 9999999999999999999999998776544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=69.16 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCch--hHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSE--NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
|+.|.+.++.....+|.+ +.+++.|.++..+.+... +....+++|+.-|++|+.++|+...++..+|++|...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 567777777778888877 777777777777765433 3446799999999999999999999999999999987
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-08 Score=66.87 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=58.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+..+.++..+|.+|...|+| ++|+.+|++++++. |..+.++.++|.++...|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRY-DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46678899999999999998 99999999999762 2236789999999999999999999999998763
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=63.10 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=58.8
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
..+|... +++++|+.++++++... |.++..+..+|.++..+|++.+|...|+++++..|++...
T Consensus 2 ~~~~~~~---------~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQ---------EDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhC---------CCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4556666 99999999999999965 9999999999999999999999999999999999998875
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-06 Score=84.79 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=148.0
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
......+.++...|++ ++|...+..+....+. .......+|.++...|++++|..++++++...+..
T Consensus 410 ~l~~~~a~~~~~~g~~-~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 410 RLVLLQAWLAQSQHRY-SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred chHHHHHHHHHHCCCH-HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 3445677778888997 9999999988764321 23455667889999999999999999999865543
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.+...+|.++...| ++++|...+.+++...... ..++..+|.++... |++++|.
T Consensus 489 ~~~~a~~~lg~~~~~~G--------~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~---------G~~~~A~ 551 (903)
T PRK04841 489 SRIVATSVLGEVHHCKG--------ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ---------GFLQAAY 551 (903)
T ss_pred HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC---------CCHHHHH
Confidence 24456777777776 5999999999998754322 23556788888888 9999999
Q ss_pred HHHHHHHhchhcC---C---ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC-----cHH-HHHHHHHHHHHHHHHH
Q 020060 204 KAYQNAEKDERMK---S---NPDLYFNCATVNKYLENYERALSGFEASALKDPSL-----NAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 204 ~~~~~al~~~~~~---~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~-~~l~~~~~~l~~~~~a 271 (331)
..+++++...... . ....+..+|.++...|++++|...+.+++...... ... ..++.+....|++.+|
T Consensus 552 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 552 ETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998742111 1 12335678999999999999999999998864321 112 5577888888999999
Q ss_pred HHhhhhhhhHH
Q 020060 272 LKGHAKTKRVA 282 (331)
Q Consensus 272 ~~~~~~a~~l~ 282 (331)
...+.++..+.
T Consensus 632 ~~~l~~a~~~~ 642 (903)
T PRK04841 632 RRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHH
Confidence 88877776653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-06 Score=74.49 Aligned_cols=183 Identities=13% Similarity=0.071 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHh-
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP--S----LADAWLCLGSCIWKK- 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~- 112 (331)
..+.++..+..... ++...+..+...+.++... ++ ++|+.+|++++.+.- + -+.++..+|.+|...
T Consensus 56 ~ay~kAa~~~~~~~-----~~~~Aa~~~~~Aa~~~k~~-~~-~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~ 128 (282)
T PF14938_consen 56 EAYEKAADCYEKLG-----DKFEAAKAYEEAANCYKKG-DP-DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL 128 (282)
T ss_dssp HHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHT-TH-HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhh-CH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc
Confidence 34444444444433 4556677777777777666 86 999999999998732 1 256889999999999
Q ss_pred CChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-------hhHH
Q 020060 113 GDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG-------NSWY 178 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~ 178 (331)
|++++|+.+|++|+.+.... ..+..++.++..+| +|++|++.|++.....-+++ ..++
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--------~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--------RYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 99999999999999874322 56677888988886 59999999999887543222 2455
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----HhhHHHHHH--HhhcHHHHHHHHHHHHhc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----YFNCATVNK--YLENYERALSGFEASALK 248 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~ 248 (331)
..+.+++.. |++..|...+++..... |..... ...+-.++. ....+..|+.-|.+.-++
T Consensus 201 ~a~l~~L~~---------~D~v~A~~~~~~~~~~~--~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 201 KAILCHLAM---------GDYVAARKALERYCSQD--PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHT---------T-HHHHHHHHHHHGTTS--TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 677788877 99999999999988743 543322 222222222 223466666666554333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-07 Score=69.84 Aligned_cols=102 Identities=24% Similarity=0.195 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCch
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD----------LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSE 150 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~ 150 (331)
+.|.+.++.....+|.+++++++-|.++..+.+ +++|+.-|++++.++|+. .+++++|.++..+|....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 778999999999999999999999988876633 577899999999999999 999999999998876432
Q ss_pred h---HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 020060 151 N---QAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183 (331)
Q Consensus 151 ~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 183 (331)
+ ....|++|..+|++|.+.+|++......|..+
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2 44569999999999999999987666555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.8e-06 Score=66.62 Aligned_cols=171 Identities=26% Similarity=0.351 Sum_probs=145.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHhCChhHHHHHHHHHHhcCCC--h--HHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGS-CIWKKGDLPAAKNCFNLALSKGPN--K--KIL 135 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~--~--~~~ 135 (331)
......+...|..+...+++ ..++..+.+++...+.........+. ++...|+++.|...|.+++...|. . ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 92 PNLAEALLNLGLLLEALGKY-EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred cchHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 45566788889999999997 99999999999988887666666666 899999999999999999987773 2 445
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
...+..+...+ +++.++..+.+++...+. ....+..++..+... +++..|+..+..++...
T Consensus 171 ~~~~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~- 232 (291)
T COG0457 171 LALGALLEALG--------RYEEALELLEKALKLNPDDDAEALLNLGLLYLKL---------GKYEEALEYYEKALELD- 232 (291)
T ss_pred HHhhhHHHHhc--------CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc---------ccHHHHHHHHHHHHhhC-
Confidence 55555555443 599999999999999999 689999999999988 89999999999999854
Q ss_pred cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 215 MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|.....+..++..+...+.++++...+.+++...|.
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 233 -PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 776777888888888777899999999999999997
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=61.63 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|++++|+..|++++... |+++.+++.+|.++...|++++|...+++++..+|+++..
T Consensus 5 ~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp THHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred cCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999955 9999999999999999999999999999999999997654
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.6e-06 Score=66.01 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=101.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhC-----------ChhHHHHHHHH
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKG-----------DLPAAKNCFNL 124 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~~A~~~~~~ 124 (331)
.++....+.+.+|.+++..|+| ..|+..+++.++..|++ +.+++.+|.+++... ...+|+..|+.
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y-~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~ 115 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDY-EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEE 115 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHH
Confidence 3456677888999999999998 99999999999999886 568999999977653 24589999999
Q ss_pred HHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 125 ALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 125 al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
.+...|+. .+...+..+-..+ ..--+.+|..|... |.+.
T Consensus 116 li~~yP~S~y~~~A~~~l~~l~~~l----------------------------a~~e~~ia~~Y~~~---------~~y~ 158 (203)
T PF13525_consen 116 LIKRYPNSEYAEEAKKRLAELRNRL----------------------------AEHELYIARFYYKR---------GKYK 158 (203)
T ss_dssp HHHH-TTSTTHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHCT---------T-HH
T ss_pred HHHHCcCchHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHc---------ccHH
Confidence 99999987 2222222222211 11224577788877 9999
Q ss_pred HHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhcHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLENYERAL 239 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~~~~A~ 239 (331)
.|+..++.+++ .-|+.+ +++..++.+|..+|..+.|.
T Consensus 159 aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999998 336655 55888999999999888554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-08 Score=65.20 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-c-CC---ChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 171 VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-M-KS---NPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 171 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
|+...++.++|.+|... |++++|+.+|++++.... . +. ...++.++|.++..+|++++|+.+++++
T Consensus 2 ~~~a~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 2 PDTANAYNNLARVYREL---------GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456889999999999 999999999999997421 1 12 2355899999999999999999999999
Q ss_pred HhcC
Q 020060 246 ALKD 249 (331)
Q Consensus 246 l~~~ 249 (331)
+++.
T Consensus 73 l~i~ 76 (78)
T PF13424_consen 73 LDIF 76 (78)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8763
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=82.08 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=65.2
Q ss_pred CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH---HhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 169 LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 169 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
.+|+++..|+++|.+|... |++++|+..|++++.++ |+++.+ |+|+|.+|..+|++++|+.+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~l---------GryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK---------GRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5788999999999999999 99999999999999966 999865 999999999999999999999999
Q ss_pred Hhc
Q 020060 246 ALK 248 (331)
Q Consensus 246 l~~ 248 (331)
+.+
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 997
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-06 Score=70.14 Aligned_cols=205 Identities=10% Similarity=0.025 Sum_probs=151.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPS--LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
.+...+-.+..+...+|.| ++++.+--..+.. ... .-+++.+++..+....++.+++.+-...+.+....
T Consensus 41 ~Rf~~lG~l~~a~s~~g~y-~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~ 119 (518)
T KOG1941|consen 41 GRFRVLGCLVTAHSEMGRY-KEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ 119 (518)
T ss_pred HHHHHhccchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Confidence 3444555566677777777 7666544443332 221 25688999999999999999999998888765332
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.++..+|.+...++ .++++++.|+.|++...++ ..++..||.++..+ .++++|+
T Consensus 120 ~~gq~~l~~~~Ahlgls--------~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l---------~D~~Kal 182 (518)
T KOG1941|consen 120 LGGQVSLSMGNAHLGLS--------VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL---------KDYEKAL 182 (518)
T ss_pred ccchhhhhHHHHhhhHH--------HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH---------HhhhHHh
Confidence 45556777777775 4999999999999865433 35778899999999 9999999
Q ss_pred HHHHHHHhchhcC--CCh------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H-HHHHHHHHHHHHH
Q 020060 204 KAYQNAEKDERMK--SNP------DLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T-EEVQMMVNLLDKI 268 (331)
Q Consensus 204 ~~~~~al~~~~~~--~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~-~~l~~~~~~l~~~ 268 (331)
.+..++..+...- ++. -+++.++..+..+|....|.++.+.+.++.-.+.+ . ..++.++...|+.
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~ 262 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL 262 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence 9999998743111 222 23788999999999999999999999886433222 1 6788999999999
Q ss_pred HHHHHhhhhhhhHHHH
Q 020060 269 ENLLKGHAKTKRVASL 284 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~ 284 (331)
+.|...|+.|......
T Consensus 263 e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 263 ERAFRRYEQAMGTMAS 278 (518)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999888866543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-07 Score=70.66 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=102.0
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..++..|..|-.+|. ..-|.-.|.+++.+.|+-+.+++.||.-+... |+++.|.+.|+..+++
T Consensus 66 ~l~fERGvlYDSlGL--------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a---------~~fdaa~eaFds~~EL 128 (297)
T COG4785 66 QLLFERGVLYDSLGL--------RALARNDFSQALAIRPDMPEVFNYLGIYLTQA---------GNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHhcchhhhhhH--------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc---------ccchHHHHHhhhHhcc
Confidence 566777888887774 88899999999999999999999999999988 9999999999999996
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
+ |.+.-++.|.|..++.-|+|.-|...+.+-.+-||+++.+ .++-.....+..
T Consensus 129 D--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP 182 (297)
T COG4785 129 D--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDP 182 (297)
T ss_pred C--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCH
Confidence 6 9999999999999999999999999999999999999987 666555444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-05 Score=64.33 Aligned_cols=163 Identities=16% Similarity=0.113 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+..|+.-|...++.|++++|+..|+.+....|.. .+...++.+++..+ ++++|+....+-+.+.|++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--------~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--------EYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHhCCCC
Confidence 47789999999999999999999999999999877 78888999988665 5999999999999999988
Q ss_pred ch---hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----------------HhhHHHHHHHhh
Q 020060 174 GN---SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----------------YFNCATVNKYLE 233 (331)
Q Consensus 174 ~~---~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~la~~~~~~g 233 (331)
+. +++..|.++... +.....++.-..+|+..|+..+. .-|++.-+ -..+|..|.+.|
T Consensus 105 ~n~dY~~YlkgLs~~~~-i~~~~rDq~~~~~A~~~f~~~i~--ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 105 PNADYAYYLKGLSYFFQ-IDDVTRDQSAARAAFAAFKELVQ--RYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CChhHHHHHHHHHHhcc-CCccccCHHHHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 75 566677776543 22222255666788899999987 44665311 356788899999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIENL 271 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~~a 271 (331)
.+..|...++..++..|+.... ..+..++..+|-.++|
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 9999999999999998876553 3334444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-06 Score=66.47 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a 271 (331)
++++.|+..+.++|.++ |.+..++...|.+|..+..|++|+..|++.+..+|....+ ....++--....-.+.
T Consensus 148 ~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred hhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 55555555555555533 5555555555555555555666666666666666655544 4444433333333333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=80.82 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=65.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADA---WLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
..+..+..++++|.+|...|+| ++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry-eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV-KDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3457788999999999999998 99999999999999999855 9999999999999999999999999974
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-06 Score=66.03 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=83.9
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh-----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP-----DLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
.-|+-++.. |+|++|...|..++... |..+ .+|.|.|.++.+++..+.|+..+.++++++|.+.
T Consensus 100 ~EGN~~F~n---------gdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 100 KEGNELFKN---------GDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHHHHhhhc---------ccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH
Confidence 345556666 88888888888888876 5433 3488999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhcc
Q 020060 254 AT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASSLA 289 (331)
Q Consensus 254 ~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~~~ 289 (331)
.+ ...+.++..+.++++|+..|.+.+.+.|.....+
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 98 8889999999999999999998887776655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-05 Score=79.94 Aligned_cols=202 Identities=15% Similarity=0.063 Sum_probs=138.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC--
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-- 131 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-- 131 (331)
.....+..+|.++...|++ ++|..++.+++..... ....+..+|.++...|++++|...+.+++.....
T Consensus 529 ~~~~~~~~la~~~~~~G~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFL-QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 3455677889999999997 9999999999886221 2334667899999999999999999999876432
Q ss_pred --h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc--hhH-HH----HHHHHHhhhhhcCCCChhhHH
Q 020060 132 --K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG--NSW-YN----LGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 132 --~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~-~~----l~~~~~~~~~~~~~~~~~~~~ 200 (331)
. ..+..++.+....| ++++|...+.++..+.+... ..+ .. ....+... |+.+
T Consensus 608 ~~~~~~~~~~la~~~~~~G--------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~ 670 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARG--------DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT---------GDKE 670 (903)
T ss_pred chHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC---------CCHH
Confidence 2 44555777887776 48999999988876533221 111 11 11222223 7778
Q ss_pred HHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH-HHHHHHHHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~-~~l~~~~~~l~~~~ 269 (331)
.|...+....... +... ..+..+|.++...|++++|...+++++...... ... ..++.++...|+..
T Consensus 671 ~A~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 671 AAANWLRQAPKPE--FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred HHHHHHHhcCCCC--CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 8877776655311 1111 124678888888889999988888888753221 113 66778888888888
Q ss_pred HHHHhhhhhhhHHH
Q 020060 270 NLLKGHAKTKRVAS 283 (331)
Q Consensus 270 ~a~~~~~~a~~l~~ 283 (331)
+|...+.+|..+..
T Consensus 749 ~A~~~L~~Al~la~ 762 (903)
T PRK04841 749 EAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888876653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00014 Score=59.07 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
.....-|.+|...|++++|.+...+...+ ++...-..++.++ .+++-|.+.+++..+++.+ .+...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l----E~~Al~VqI~lk~--------~r~d~A~~~lk~mq~ided--~tLtQ 174 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL----EAAALNVQILLKM--------HRFDLAEKELKKMQQIDED--ATLTQ 174 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH----HHHHHHHHHHHHH--------HHHHHHHHHHHHHHccchH--HHHHH
Confidence 34455577889999999999988773221 3333334444444 4688999999988887643 45666
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHH
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEV 258 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l 258 (331)
|+.++...+ ..| +++.+|..+|+..-.. .+..+.....++.++..+|+|++|...++.++..+++++.. .++
T Consensus 175 LA~awv~la-~gg----ek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 175 LAQAWVKLA-TGG----EKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHh-ccc----hhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 777777652 122 6789999999988763 38888889999999999999999999999999999999987 777
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 020060 259 QMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 259 ~~~~~~l~~~~~a~~~~~~ 277 (331)
-.+-..+|+-.++...+..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLS 266 (299)
T ss_pred HHHHHHhCCChHHHHHHHH
Confidence 7777788887777655443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-05 Score=68.09 Aligned_cols=159 Identities=13% Similarity=0.186 Sum_probs=133.4
Q ss_pred cccccHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchh
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPS----LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSEN 151 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~ 151 (331)
...+. +.+.+.|+.++++-|. .+..|...|....+..+...|.+.+-.|+...|.+......-.+-.++
T Consensus 378 e~ed~-ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL------ 450 (677)
T KOG1915|consen 378 EAEDV-ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQL------ 450 (677)
T ss_pred HhhhH-HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH------
Confidence 35675 8899999999999885 578899999999999999999999999999999986555555555544
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-HhhHHHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-YFNCATVNK 230 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~la~~~~ 230 (331)
++++.+...|++-++..|.+..+|...|.+-..+ |+.+.|...|+-|+.... -+-|.+ |-..-..-.
T Consensus 451 --~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L---------gdtdRaRaifelAi~qp~-ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 451 --REFDRCRKLYEKFLEFSPENCYAWSKYAELETSL---------GDTDRARAIFELAISQPA-LDMPELLWKAYIDFEI 518 (677)
T ss_pred --hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh---------hhHHHHHHHHHHHhcCcc-cccHHHHHHHhhhhhh
Confidence 4699999999999999999999999999999988 999999999999997431 233433 566666677
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCc
Q 020060 231 YLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
..|.++.|...|++.+...+...
T Consensus 519 ~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred hcchHHHHHHHHHHHHHhcccch
Confidence 89999999999999998877655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=73.46 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
....|.-|+.+|.|++|+.||.+++..+|.+ ..+.+.+.+|+.+ +.|..|...+..|+.++.....+|...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--------K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ--------KSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH--------HHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 4668999999999999999999999999988 7788899999976 579999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHh
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYF 223 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (331)
|.+-..+ |...+|.+-++.++.+. |.+.++.-
T Consensus 172 ~~AR~~L---------g~~~EAKkD~E~vL~LE--P~~~ELkK 203 (536)
T KOG4648|consen 172 MQARESL---------GNNMEAKKDCETVLALE--PKNIELKK 203 (536)
T ss_pred HHHHHHH---------hhHHHHHHhHHHHHhhC--cccHHHHH
Confidence 9999999 99999999999999965 87766533
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.2e-05 Score=67.69 Aligned_cols=202 Identities=18% Similarity=0.087 Sum_probs=154.7
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC----
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS----LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN---- 131 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---- 131 (331)
+.....+|...|..|...|+. +.|...|.++.+..-. .+.+|..-|..-....+++.|..+.+++...-..
T Consensus 383 ~Gs~~~Lw~~faklYe~~~~l-~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 383 VGSPGTLWVEFAKLYENNGDL-DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCChhhHHHHHHHHHHhcCcH-HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 344566888999999999996 9999999999987532 3688999999999999999999999999754322
Q ss_pred ----h-----------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 132 ----K-----------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 132 ----~-----------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
. ..|..++...-..| -++.....|.+.+++.--.|....+.|+.+...
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g--------tfestk~vYdriidLriaTPqii~NyAmfLEeh--------- 524 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLG--------TFESTKAVYDRIIDLRIATPQIIINYAMFLEEH--------- 524 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------
Confidence 0 24555566555555 488889999999998888899999999999887
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHH---HHhhcHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN---KYLENYERALSGFEASALKDPSLNAT---EEVQMMVNLLDKIEN 270 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~---~~l~~~~~~l~~~~~ 270 (331)
.-++++...|++.+.+-..|.-.++|...-..+ +..-..+.|...|++|+...|..... ...+.+....|-...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 889999999999998755566667765443332 33446899999999999988743332 555566666677777
Q ss_pred HHHhhhhhh
Q 020060 271 LLKGHAKTK 279 (331)
Q Consensus 271 a~~~~~~a~ 279 (331)
|+..|.+|-
T Consensus 605 amsiyerat 613 (835)
T KOG2047|consen 605 AMSIYERAT 613 (835)
T ss_pred HHHHHHHHH
Confidence 777666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-05 Score=61.67 Aligned_cols=168 Identities=12% Similarity=0.024 Sum_probs=134.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHh
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSM 145 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 145 (331)
....-|.++...++| ++|+...... ...++...-..++.+..+++-|...+++..+++.+ ..+..++..+..+
T Consensus 110 ~~l~aa~i~~~~~~~-deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~l 182 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDF-DEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKL 182 (299)
T ss_pred HHHHhhHHhhcCCCh-HHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHH
Confidence 344556788888998 9998877663 34566666778889999999999999999888765 4555666666655
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
.. -...+.+|.-+|++.-+..|..+...+..+.+++.+ |+|++|...++.++... +.+|+.+.|+
T Consensus 183 a~----ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~---------~~~eeAe~lL~eaL~kd--~~dpetL~Nl 247 (299)
T KOG3081|consen 183 AT----GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL---------GRYEEAESLLEEALDKD--AKDPETLANL 247 (299)
T ss_pred hc----cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh---------cCHHHHHHHHHHHHhcc--CCCHHHHHHH
Confidence 22 124588999999999988888889999999999999 99999999999999954 9999999999
Q ss_pred HHHHHHhhcHHHHH-HHHHHHHhcCCCCcHH
Q 020060 226 ATVNKYLENYERAL-SGFEASALKDPSLNAT 255 (331)
Q Consensus 226 a~~~~~~g~~~~A~-~~~~~al~~~~~~~~~ 255 (331)
-.+-...|...++. ++..+....+|.++..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999886665 4566666778888754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00018 Score=63.08 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=143.1
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..-.-+.+|...+.......+. ..|...+-.|+...|.+. .+...-.+-.++++++.....|++-++..|.+ .+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l-~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNL-TGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHccc-HHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 4456788899999999999996 999999999999999864 44445556678899999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
.|..-..+| +.+.|...|.-|+.....+..-..--+.+-+.. ..|.++.|...|++.+... +.
T Consensus 477 yaElE~~Lg--------dtdRaRaifelAi~qp~ldmpellwkaYIdFEi-------~~~E~ekaR~LYerlL~rt--~h 539 (677)
T KOG1915|consen 477 YAELETSLG--------DTDRARAIFELAISQPALDMPELLWKAYIDFEI-------EEGEFEKARALYERLLDRT--QH 539 (677)
T ss_pred HHHHHHHhh--------hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh-------hcchHHHHHHHHHHHHHhc--cc
Confidence 999999887 599999999999876543333222222222222 3399999999999999743 44
Q ss_pred ChhHHhhHHHHHH-----Hhh-----------cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 218 NPDLYFNCATVNK-----YLE-----------NYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 218 ~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
. .+|...|..-. ..+ ....|...|++|.....+.........++....+++...
T Consensus 540 ~-kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~ 609 (677)
T KOG1915|consen 540 V-KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETF 609 (677)
T ss_pred c-hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 4 37777776655 344 677889999999887665554444444444555555444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-06 Score=59.42 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=87.1
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQL 138 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l 138 (331)
...+-..|..+...|+. +.|++.|.+++.+.|..+.+|.+.+..+.-.|+.++|+.-+++++++.... .++...
T Consensus 43 S~~LEl~~valaE~g~L-d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDL-DGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHHhccch-HHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 34455678888889996 999999999999999999999999999999999999999999999997544 678889
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
|.+|..+| +-+.|...|+.+-++....
T Consensus 122 g~lyRl~g--------~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 122 GLLYRLLG--------NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHhC--------chHHHHHhHHHHHHhCCHH
Confidence 99999887 4788888888887765543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-05 Score=61.41 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=113.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC----CCh-HHHhh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----PNK-KILCQ 137 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~-~~~~~ 137 (331)
..+.+.+..++.-.|.| .-....+.+.++.+ |..+.....+|.+-++.||.+.|..+|+++-+.. .-. .....
T Consensus 177 ~~Vmy~~~~~llG~kEy-~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEY-VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHhcchhh-hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 44566778888889998 99999999999988 5678888999999999999999999999654332 211 22233
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
.......+|. +++..|...+.+++..+|.++.+.++.+.|++.+ |+..+|++..+.++... |.
T Consensus 256 ~n~a~i~lg~------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl---------g~l~DAiK~~e~~~~~~--P~ 318 (366)
T KOG2796|consen 256 MNSAFLHLGQ------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL---------GKLKDALKQLEAMVQQD--PR 318 (366)
T ss_pred hhhhhheecc------cchHHHHHHHhhccccCCCchhhhchHHHHHHHH---------HHHHHHHHHHHHHhccC--Cc
Confidence 3333333443 6799999999999999999999999999999988 99999999999999743 54
Q ss_pred Ch---hHHhhHHHH
Q 020060 218 NP---DLYFNCATV 228 (331)
Q Consensus 218 ~~---~~~~~la~~ 228 (331)
.. .+.+|+-.+
T Consensus 319 ~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 319 HYLHESVLFNLTTM 332 (366)
T ss_pred cchhhhHHHHHHHH
Confidence 32 334444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.8e-06 Score=59.91 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=89.0
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
..++.-|...+..| +|.+|++.|+......|.. ..+...++.+|... +++++|+..+++-
T Consensus 11 ~~ly~~a~~~l~~~--------~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~---------~~y~~A~a~~~rF 73 (142)
T PF13512_consen 11 QELYQEAQEALQKG--------NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ---------GDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHHHHHHHhC--------CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc---------cCHHHHHHHHHHH
Confidence 56677777777554 6999999999999988764 46788999999988 9999999999999
Q ss_pred HhchhcCCChhH---HhhHHHHHHHhhc---------------HHHHHHHHHHHHhcCCCCcHH
Q 020060 210 EKDERMKSNPDL---YFNCATVNKYLEN---------------YERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 210 l~~~~~~~~~~~---~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~~~ 255 (331)
+++. |.++.+ ++..|.+++.+.. ..+|...|++.+...|++..+
T Consensus 74 irLh--P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 74 IRLH--PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhC--CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9965 888755 8999999999877 889999999999999998764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.5e-06 Score=67.22 Aligned_cols=103 Identities=16% Similarity=0.091 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--- 173 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--- 173 (331)
-.|+.|.-++..|+|..|...|..-++..|+. .+++.||.+++.+| +++.|...|..+++..|++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhCCCCCCC
Confidence 37899999999999999999999999999988 89999999999887 5999999999999987765
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
|++++.+|.+...+ |+.++|...|+++++ .-|+.+.+.
T Consensus 215 pdallKlg~~~~~l---------~~~d~A~atl~qv~k--~YP~t~aA~ 252 (262)
T COG1729 215 PDALLKLGVSLGRL---------GNTDEACATLQQVIK--RYPGTDAAK 252 (262)
T ss_pred hHHHHHHHHHHHHh---------cCHHHHHHHHHHHHH--HCCCCHHHH
Confidence 67899999999999 999999999999998 458877653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.4e-05 Score=56.79 Aligned_cols=145 Identities=13% Similarity=0.086 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChh
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK-LNPSLADAWLCLGSCIWKKGDLP 116 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~ 116 (331)
-++.+.++.+-++..+ ...-.+.+|..+...|++ .+|..+|++++. +...++..+..++...+..+++.
T Consensus 72 P~R~~Rea~~~~~~Ap---------Tvqnr~rLa~al~elGr~-~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 72 PERHLREATEELAIAP---------TVQNRYRLANALAELGRY-HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred hhHHHHHHHHHHhhch---------hHHHHHHHHHHHHHhhhh-hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 4566666666666544 234466789999999998 999999999987 56778999999999999999999
Q ss_pred HHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 117 AAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
.|...+++..+.+|.. +....+|.++...| .+.+|...|+.++...|. +.+....+..+..+
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g--------~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q------ 206 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG--------KYADAESAFEVAISYYPG-PQARIYYAEMLAKQ------ 206 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC--------CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh------
Confidence 9999999999999876 67778899999887 489999999999998875 45556666666666
Q ss_pred CChhhHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al 210 (331)
|+..+|..-+....
T Consensus 207 ---gr~~ea~aq~~~v~ 220 (251)
T COG4700 207 ---GRLREANAQYVAVV 220 (251)
T ss_pred ---cchhHHHHHHHHHH
Confidence 76666655554443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-06 Score=67.81 Aligned_cols=96 Identities=23% Similarity=0.204 Sum_probs=86.4
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
.-+-.-|+.++....| ..|+.+|.++|.++|..+..|.+.+.||++..+++.+..-.+++++++|+. ..++.+|....
T Consensus 11 ~qlkE~gnk~f~~k~y-~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRY-DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHhccccccchhhh-chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 3345668888888898 999999999999999999999999999999999999999999999999998 88999999888
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.. +.|++|+.++.++..+
T Consensus 90 ~s--------~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QS--------KGYDEAIKVLQRAYSL 107 (284)
T ss_pred hh--------ccccHHHHHHHHHHHH
Confidence 55 4599999999999654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.3e-05 Score=72.71 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=143.4
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL-NPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKI 134 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 134 (331)
.|..+..|...-..+...++. ++|.+.+++|+.. ++.. -..|..+-++...-|.-+.-.+.|++|.+.......
T Consensus 1454 sPNSSi~WI~YMaf~LelsEi-ekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEI-EKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhh-HHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 344555666666667777885 8888888888874 3322 334554444444556666777788888777655567
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
+..|..+|..-+ .+++|.++++..++...+....|...+..++.. .+-+.|...+.+|++.
T Consensus 1533 ~~~L~~iy~k~e--------k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~---------ne~~aa~~lL~rAL~~-- 1593 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSE--------KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ---------NEAEAARELLKRALKS-- 1593 (1710)
T ss_pred HHHHHHHHHHhh--------cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc---------cHHHHHHHHHHHHHhh--
Confidence 777777777554 588889999888888877888898888888877 7778888888888883
Q ss_pred cCC--ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 215 MKS--NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 215 ~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
.|. +.......|.+-++.|+.+.+...|+-.+.-+|.-.+. .-+.......+........|+++..
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 366 66667788888888899999888898888888876665 5555555555555555555555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-06 Score=58.71 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC--hhHHhhHHHHHHH
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN--PDLYFNCATVNKY 231 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~ 231 (331)
++.+.|++.|.+++.+.|..+.+|++.+.++... |+.++|+.-+++++++...... ..++...|.+|..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq---------~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQ---------GDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHc---------CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999988 9999999999999985311111 2448899999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCc
Q 020060 232 LENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+|+-+.|...|+.+-++.....
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHH
Confidence 9999999999999998877644
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=48.28 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00023 Score=57.06 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=123.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+....+..+..-+..|....+| ++|..++.++.+-..++ +.++-..|.+......+.++..+|+++..+...+
T Consensus 26 d~dgaas~yekAAvafRnAk~f-eKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKF-EKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4445666777778888889998 99999999999765443 3456667777888899999999999998775333
Q ss_pred -------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 133 -------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG------NSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++-.-|.+.-. .+.++|+..|++++.+-.... +.+...+.++... .++
T Consensus 105 GspdtAAmaleKAak~len---------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl---------~kf 166 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALEN---------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL---------EKF 166 (308)
T ss_pred CCcchHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh---------HHh
Confidence 334444444433 358999999999987644332 3455677888888 899
Q ss_pred HHHHHHHHHHHhc----hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 200 LQSLKAYQNAEKD----ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 200 ~~A~~~~~~al~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
.+|-..+.+-... ...+.....+...-.+|....+|..|..+|+..-++..
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 9998888775531 11222233455666677788899999999999877643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-06 Score=46.10 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.+|+++|.+|...|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-05 Score=64.43 Aligned_cols=135 Identities=9% Similarity=0.098 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
+|..+.....+.+..+.|..+|.++.+..+.. .+|...|.+.+..+ ++.+.|..+|+.+++..|.++..|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~-------~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN-------KDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC-------S-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45555566666666777777777776444433 66666666655544 24555777777777777777777766
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
....+... ++.+.|...|++++..- +... .+|......-...|+.+...+..+++.+..|+..
T Consensus 76 Y~~~l~~~---------~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 76 YLDFLIKL---------NDINNARALFERAISSL--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHT---------T-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHh---------CcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 66666666 67777777777777532 3322 4566666666666777777777777776666643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-06 Score=49.25 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGS 107 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 107 (331)
+++.+|..|...|++ ++|+..|+++++.+|+++.+|..+|.
T Consensus 3 ~~~~la~~~~~~G~~-~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQP-DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455566666666664 66666666666666666666665553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.7e-05 Score=60.74 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC----CC--C
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----DV--K 172 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p--~ 172 (331)
+.+.+..++...|.|.-++..+.++++.+|.. .....+|.+.++.| +.+.|..+|++.-+. +. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--------D~k~a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG--------DIKTAEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHhhhhccch
Confidence 45778888999999999999999999998665 45556999999887 478888888754432 21 2
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
...+..+.+.++... +++..|...|.+++..+ +.++.+-++.|.|...+|+...|++.++.++...|..
T Consensus 251 ~~~V~~n~a~i~lg~---------nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQ---------NNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHhhhhhheecc---------cchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 233455566666665 89999999999999954 9999999999999999999999999999999999986
Q ss_pred cH
Q 020060 253 NA 254 (331)
Q Consensus 253 ~~ 254 (331)
..
T Consensus 320 ~l 321 (366)
T KOG2796|consen 320 YL 321 (366)
T ss_pred ch
Confidence 54
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-06 Score=48.93 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
+.++..+|..|...|++++|+..|+++++.+|++ .++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999 88887775
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.7e-06 Score=71.90 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=98.4
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
-..+...+..++| +.|+..|.++|+++|+.+..+-+.+..+...+++..|+.-+.++++.+|.. .+++..|.+...++
T Consensus 8 k~ean~~l~~~~f-d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVF-DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchH-HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3456667778898 999999999999999999999999999999999999999999999999998 99999999999886
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
.+.+|+..|+....+.|+.+.+...+..|-.
T Consensus 87 --------~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 --------EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred --------HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 5999999999999999999988777666544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.6e-06 Score=45.94 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.6
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3579999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00043 Score=67.98 Aligned_cols=197 Identities=11% Similarity=0.024 Sum_probs=156.6
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 34 KVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 34 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
..+++++.-.-|.+.|..+.-. .....-.+|..+=+....-|. .+.-.+.|++|.+.... ...+..|..+|...+
T Consensus 1470 elsEiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~-eesl~kVFeRAcqycd~-~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGT-EESLKKVFERACQYCDA-YTVHLKLLGIYEKSE 1544 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCc-HHHHHHHHHHHHHhcch-HHHHHHHHHHHHHhh
Confidence 3445666666677777776422 233455555555555555565 37788899999887543 457888999999999
Q ss_pred ChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhh
Q 020060 114 DLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~ 190 (331)
++++|.++|+..++..... ..|..++..++... +-+.|...+.+|+.--|. +.......+.+-+..
T Consensus 1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n--------e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~--- 1613 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN--------EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY--- 1613 (1710)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc--------HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc---
Confidence 9999999999999998855 89999999998664 478899999999999998 677777788888877
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|+.+.+...|+-.+. ..|...++|.-+...-.+.|+.+-+...|++++.+.=.-..
T Consensus 1614 ------GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1614 ------GDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred ------CCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 999999999999998 45999999999999999999999999999999987654433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00078 Score=63.40 Aligned_cols=100 Identities=19% Similarity=0.089 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
..+.+...-+++++.|. ..-+....|..+..+|++ ++|..+++..-...+++...+..+-.||...|++++
T Consensus 25 fkkal~~~~kllkk~Pn--------~~~a~vLkaLsl~r~gk~-~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPN--------ALYAKVLKALSLFRLGKG-DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHHHhcCc-hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34555555556666553 334455678888999997 999988888777888888899999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHhhHHHHHHHhc
Q 020060 118 AKNCFNLALSKGPNKKILCQLSMLERSMA 146 (331)
Q Consensus 118 A~~~~~~al~~~~~~~~~~~l~~~~~~~g 146 (331)
|..+|++++..+|+...+..+-.++.+.+
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHH
Confidence 99999999999999766666666666443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0017 Score=59.22 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=131.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-CCC-----cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL-NPS-----LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
....-|.....+ ..|+. .+-+..|.+|+.. +|. ....|..+|..|...|+.+.|...|+++.+..=..
T Consensus 347 ~nV~eW~kRV~l--~e~~~-~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRVKL--YEGNA-AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhhhh--hcCCh-HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 444445444433 34664 7788889888863 554 35789999999999999999999999999875322
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC------------------CchhHHHHHHHHHhhhhhcC
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK------------------DGNSWYNLGNACLTSFFVTG 192 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~ 192 (331)
.+|+..|..-. .+++++.|+++.++|...-.. +..+|..++......
T Consensus 424 La~vw~~waemEl--------rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~----- 490 (835)
T KOG2047|consen 424 LAEVWCAWAEMEL--------RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL----- 490 (835)
T ss_pred HHHHHHHHHHHHH--------hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh-----
Confidence 56666665544 446799999999999865221 234566777777777
Q ss_pred CCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 193 SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 193 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|-++.....|++.+.+. --.|..-.|.|..+....-+++|.+.|++.+.+.+=...
T Consensus 491 ----gtfestk~vYdriidLr--iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 491 ----GTFESTKAVYDRIIDLR--IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred ----ccHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 88888999999999866 888999999999999999999999999999998765433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9e-06 Score=44.71 Aligned_cols=34 Identities=35% Similarity=0.656 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.+|+.+|.+++..|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567778888888888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.7e-06 Score=44.58 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=30.8
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+.+++.+|.++..+|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-05 Score=62.45 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh
Q 020060 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL 232 (331)
Q Consensus 153 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 232 (331)
.++|..|+.+|.+++.++|..+..|.+.+.+++.+ .+++.+.....+++... |+....++.+|.+....
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~---------~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL---------KHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh---------hhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhh
Confidence 35799999999999999999999999999999999 99999999999999955 99999999999999999
Q ss_pred hcHHHHHHHHHHHHhc
Q 020060 233 ENYERALSGFEASALK 248 (331)
Q Consensus 233 g~~~~A~~~~~~al~~ 248 (331)
..|++|+..+.++..+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999999765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00026 Score=59.44 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=123.4
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc-CCChH----HHhhHHHHHHHhcc
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK-GPNKK----ILCQLSMLERSMAQ 147 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~----~~~~l~~~~~~~g~ 147 (331)
+....|++ .+|-....+.++-.|.+.-++..--..++..|+...-...+++.+-. +++.. ..-.++-.+...|
T Consensus 112 i~~~~g~~-h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g- 189 (491)
T KOG2610|consen 112 ILWGRGKH-HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG- 189 (491)
T ss_pred Hhhccccc-cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc-
Confidence 34456776 77888899999999999999988889999999999999999999877 55542 2222555555554
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC--ChhHHhhH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS--NPDLYFNC 225 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~l 225 (331)
-|++|.+..+++++++|.+..+...++.++... +++.++.+...+.-..-.... -..-|...
T Consensus 190 -------~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~---------~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 190 -------IYDDAEKQADRALQINRFDCWASHAKAHVLEMN---------GRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred -------cchhHHHHHHhhccCCCcchHHHHHHHHHHHhc---------chhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 599999999999999999998888899888877 999999999987754221011 01227788
Q ss_pred HHHHHHhhcHHHHHHHHHHHHh
Q 020060 226 ATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~ 247 (331)
|.++...+.|+.|+..|.+-+-
T Consensus 254 Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHhhhcccchhHHHHHHHHHHH
Confidence 9999999999999999987653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00027 Score=62.51 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=113.8
Q ss_pred ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh------------------------
Q 020060 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK------------------------ 132 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------------------ 132 (331)
..+. +.-++.-++|++++|+.+.+|..||.= ...-..+|..+|+++++.....
T Consensus 181 ERnp-~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 181 ERNP-QARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred cCCH-HHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 4453 788999999999999999999988863 2233566666666666443111
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
.+...+|.+.+++| +.++|++.+++.++.+|. +..++.+|..+++.+ +.|.++...+.+
T Consensus 258 ~~y~KrRLAmCarklG--------r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel---------q~Yad~q~lL~k 320 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLG--------RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL---------QAYADVQALLAK 320 (539)
T ss_pred hhhhHHHHHHHHHHhC--------ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc---------CCHHHHHHHHHH
Confidence 13456888999887 599999999999988775 456888999999988 999998888877
Q ss_pred HHhchhcCCChhHHhhHHHHHHH-hhc---------------HHHHHHHHHHHHhcCCCCcH
Q 020060 209 AEKDERMKSNPDLYFNCATVNKY-LEN---------------YERALSGFEASALKDPSLNA 254 (331)
Q Consensus 209 al~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~~~ 254 (331)
--.. ..|..+...+.-|....+ .++ -..|.+.+.+|++.+|.-+.
T Consensus 321 YdDi-~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 321 YDDI-SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hccc-cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 5321 246677777777665433 121 23477889999999998664
|
The molecular function of this protein is uncertain. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00065 Score=63.90 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=89.5
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
..++| .+|.....+.++..|+..-+....|.++.+.|+.++|..+++..-...+++ ..+.-+..+|..++
T Consensus 21 d~~qf-kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-------- 91 (932)
T KOG2053|consen 21 DSSQF-KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-------- 91 (932)
T ss_pred hhHHH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh--------
Confidence 45787 999999999999999999999999999999999999998888777666766 67777889999776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
++++|..+|++++..+|+ ......+-++|.+.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~ 123 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVRE 123 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHH
Confidence 599999999999999999 77777777777776
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-05 Score=68.40 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE 233 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 233 (331)
+.|+.|+..|.+|++++|+++..+-+.+.+++.. +++..|+.-+.++++.. |....+|+..|.+...++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~---------e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV---------ESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheee---------chhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 5799999999999999999999999999999988 99999999999999966 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHH-HHHHHHH--HHHHHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNAT-EEVQMMV--NLLDKIENLL 272 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~-~~l~~~~--~~l~~~~~a~ 272 (331)
.+.+|+..|+....+.|+.+.+ ..+..+- ....+++.++
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999986 4444443 3333444444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=4e-06 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 162 HAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 162 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
+|+++++++|+++.+|+++|.+|... |++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~---------g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ---------GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC---------cCHHhhc
Confidence 47899999999999999999999998 9999986
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00081 Score=55.70 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=95.0
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHH--HHHh
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML--ERSM 145 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~--~~~~ 145 (331)
+..+.-....|++ .+|...|..++...|++.++...++.||...|+.+.|...+...-.-..........+.+ +.+.
T Consensus 138 ~~~~~~~~~~e~~-~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 138 LAEAKELIEAEDF-GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHhhhhhhccch-hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3455667778897 899999999999999999999999999999999999888877643333332222111111 1111
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
. ...+ ...+.+.+..+|++..+-+.++..+... |+.+.|++.+-..++.+..-.+..+.-.+
T Consensus 217 a--------~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~---------g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 217 A--------ATPE-IQDLQRRLAADPDDVEAALALADQLHLV---------GRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred h--------cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 1 1111 2334455566777777778888887777 78888887777777654444455554444
Q ss_pred HHHHHHhh
Q 020060 226 ATVNKYLE 233 (331)
Q Consensus 226 a~~~~~~g 233 (331)
-.++...|
T Consensus 279 le~f~~~g 286 (304)
T COG3118 279 LELFEAFG 286 (304)
T ss_pred HHHHHhcC
Confidence 44444444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0098 Score=51.90 Aligned_cols=179 Identities=11% Similarity=0.073 Sum_probs=115.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---hCChhHHHHHHHHHHhcCCCh--HH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPSLADAWLCLGSCIWK---KGDLPAAKNCFNLALSKGPNK--KI 134 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~--~~ 134 (331)
+.+...+=..|....+| +.-+.+.+..-.+ -++.+.+.+..|.++.+ .|+.++|+..+..++...... +.
T Consensus 141 ~div~~lllSyRdiqdy-damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDY-DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhH-HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445555678899998 7666666655444 34456777888999888 899999999999966554433 88
Q ss_pred HhhHHHHHHHhccCc-hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh-HHHHHH------HH
Q 020060 135 LCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK-LLQSLK------AY 206 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~------~~ 206 (331)
+..+|.+|..+-... .......++|+..|.++.+++|+.... .|++.++... |. ++...+ .+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~---------g~~~~~~~el~~i~~~l 289 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLA---------GHDFETSEELRKIGVKL 289 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHc---------CCcccchHHHHHHHHHH
Confidence 889999998763321 112234899999999999999755333 3444444433 32 221111 11
Q ss_pred HHHH-hchhcCCChhH--HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 207 QNAE-KDERMKSNPDL--YFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 207 ~~al-~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
...+ +........+. +..++.+..-.|++++|..++++++.+.|..-
T Consensus 290 ~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 290 SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1111 11111112222 45667777889999999999999999976643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0029 Score=59.42 Aligned_cols=214 Identities=13% Similarity=0.084 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHH----------hcCCC----------
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV----------KLNPS---------- 97 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al----------~~~p~---------- 97 (331)
.+..+.+|+++-+... ...--..|++.+..+...++. +.|+++|+++- .-+|.
T Consensus 838 s~g~w~eA~eiAE~~D------RiHLr~Tyy~yA~~Lear~Di-~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKD------RIHLRNTYYNYAKYLEARRDI-EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred hcccHHHHHHHHhhcc------ceehhhhHHHHHHHHHhhccH-HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence 3456677777666533 223445788888888889995 99999998742 22332
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
++..|..-|......|+.+.|+.+|..+-. |+.+..+..-+| +.++|-...++ ..+..+.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~C~qG--------k~~kAa~iA~e-----sgd~AAc 970 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIKCIQG--------KTDKAARIAEE-----SGDKAAC 970 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeEeecc--------CchHHHHHHHh-----cccHHHH
Confidence 345666778888888999999999988732 333333333333 24444444332 2344455
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhH------------HhhHHH------------
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDL------------YFNCAT------------ 227 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~------------~~~la~------------ 227 (331)
+.||..|... |++.+|+..|.++-. +....+-.+- ....|.
T Consensus 971 YhlaR~YEn~---------g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~A 1041 (1416)
T KOG3617|consen 971 YHLARMYEND---------GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKA 1041 (1416)
T ss_pred HHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHH
Confidence 6666666655 666666666655432 1100000000 111122
Q ss_pred --HHHHhhcHHHHHHHHHH----------HHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 020060 228 --VNKYLENYERALSGFEA----------SALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 228 --~~~~~g~~~~A~~~~~~----------al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~ 287 (331)
.|.+.|.+.+|++.-=+ +-.++|+... . ...+..+....++++|+.....++++...++-
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444332100 1124555444 3 77778889999999999777777776655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00059 Score=62.23 Aligned_cols=163 Identities=14% Similarity=0.063 Sum_probs=116.9
Q ss_pred HhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccC--chh--HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 111 KKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQG--SEN--QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~--~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
-.||-+.++..+.++.+ .++- ..+..+..+.+..+.. ... .....+.|.+.+....+..|+.+-..+..|.++.
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45899999999999977 3332 3333322222211110 000 2245788999999999999999999999999999
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhch-hcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH--HHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMK-SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT--EEVQMM 261 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~l~~~ 261 (331)
.. |+.++|++.|++++... ..+ -..-.++.+|.++..+++|++|..+|.+..+.+.-.... ...|.+
T Consensus 279 ~~---------g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 279 LK---------GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred Hh---------cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 88 99999999999988521 111 123448999999999999999999999999866554443 778888
Q ss_pred HHHHHHH-------HHHHHhhhhhhhHHH
Q 020060 262 VNLLDKI-------ENLLKGHAKTKRVAS 283 (331)
Q Consensus 262 ~~~l~~~-------~~a~~~~~~a~~l~~ 283 (331)
+..+++. ++|.+.+.++..+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999988 555555555554443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=58.91 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=91.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K 133 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~ 133 (331)
.+...+.-+-.-|+-|+...+| ..|+.+|.++|+..-.+ +..|.+.|.+....|+|..|+.-..+++.++|++ .
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kry-k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRY-KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhH-HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 4556777888899999999999 99999999999975433 5678899999999999999999999999999999 8
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+++.-+.++..+ +++++|+..++..++++..
T Consensus 155 a~~R~Akc~~eL--------e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLEL--------ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHH--------HHHHHHHHHHhhhhhhhHH
Confidence 999999999977 4789999999888776644
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.001 Score=56.50 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=99.0
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-hCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK-KGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
+|..+.+.....+.. +.|...|.+|.+..+....+|...|.+-+. .++.+.|...|+++++..|.+ ..|......+.
T Consensus 3 v~i~~m~~~~r~~g~-~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGI-EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 455666667777775 999999999997767778899999999666 566777999999999999998 78888888888
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.++ +.+.|..+|++++..-|... .+|......-... |+.+.......++...
T Consensus 82 ~~~--------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~---------Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLN--------DINNARALFERAISSLPKEKQSKKIWKKFIEFESKY---------GDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT---------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH---------S-HHHHHHHHHHHHHH
T ss_pred HhC--------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Confidence 775 58999999999998866554 4666666655555 8888888888888874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0046 Score=52.06 Aligned_cols=96 Identities=9% Similarity=0.122 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
+.-+..-|.-|+..++|..|+.+|.++++..-.+ ..+.+.+.+...+| +|..|+..+.+++.++|++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~--------NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG--------NYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH--------HHHHHHHHHHHHHhcCcch
Confidence 4556677999999999999999999999875433 56778888888775 6999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
..+++.-+.|++.+ .++.+|+.+++..+.
T Consensus 153 ~Ka~~R~Akc~~eL---------e~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 153 LKAYIRGAKCLLEL---------ERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhhhhhhhHHHHHH---------HHHHHHHHHHhhhhh
Confidence 99999999999999 999999999988865
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0058 Score=48.93 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=91.6
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC----CCh---HHHhhHHHHHHHhccCch
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----PNK---KILCQLSMLERSMAQGSE 150 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~---~~~~~l~~~~~~~g~~~~ 150 (331)
+.| ++|.++|.++-. .|...+++..|-..|.++-.+. ..+ ..+...+.++...
T Consensus 28 ~k~-eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~----- 87 (288)
T KOG1586|consen 28 NKY-EEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV----- 87 (288)
T ss_pred cch-HHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-----
Confidence 466 888888887643 3333444444444444443221 111 3344445555433
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCchh------HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-hcCCCh---h
Q 020060 151 NQAEIVEESIQHAKEAITLDVKDGNS------WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMKSNP---D 220 (331)
Q Consensus 151 ~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~---~ 220 (331)
+..+|+.++++++++..+-+.. +..+|.+|..- ..++++|+.+|+++-.-- ....+. .
T Consensus 88 ----~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd--------l~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 88 ----DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD--------LQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred ----ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh--------HHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 4788888888888876654433 34778877642 379999999999988621 001111 3
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+...+.....+++|.+|+..|++.....-+++.
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 3667777788999999999999999886655554
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00032 Score=61.73 Aligned_cols=138 Identities=19% Similarity=0.207 Sum_probs=106.3
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH-HhcC------CCh---HHHhhHHHHHH
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA-LSKG------PNK---KILCQLSMLER 143 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~------~~~---~~~~~l~~~~~ 143 (331)
+..+.+. ..+..-.+.++.+..+.+.+....+..++..|++.+|.+.+... +... |.. .+|.++|.+.+
T Consensus 216 llq~~~L-k~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 216 LLQTRNL-KLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHH-HHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 3444453 55666666677777788999999999999999999999988765 2222 222 46778999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcC---------C---------CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITL---------D---------VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA 205 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~---------~---------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~ 205 (331)
++| .|.-+..+|.+|++. . ....++.++.|..|+.. |++-.|.++
T Consensus 295 ~~~--------~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~---------grPl~AfqC 357 (696)
T KOG2471|consen 295 QLG--------CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS---------GRPLLAFQC 357 (696)
T ss_pred ehh--------hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc---------CCcHHHHHH
Confidence 886 588888888888851 1 12356788999999988 999999999
Q ss_pred HHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 206 YQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 206 ~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
|.+++. .--.+|..|..+|.+...
T Consensus 358 f~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 358 FQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 999998 448899999999998764
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=56.41 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhH----------HhhHHHHHHHhhcHHHH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDL----------YFNCATVNKYLENYERA 238 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~----------~~~la~~~~~~g~~~~A 238 (331)
.++..-|+-++.. |+|.+|...|..|+. ....|.+++. +.|+..|+...|+|-++
T Consensus 179 ~~l~q~GN~lfk~---------~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev 249 (329)
T KOG0545|consen 179 PVLHQEGNRLFKL---------GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV 249 (329)
T ss_pred HHHHHhhhhhhhh---------ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH
Confidence 4566778888888 999999999998884 2234666543 78999999999999999
Q ss_pred HHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhcccccc
Q 020060 239 LSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKL 293 (331)
Q Consensus 239 ~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~~~~~~~ 293 (331)
+.+....+..+|.+..+ ...+.+....=+..+|...+.+++++.+.+.+.-..++
T Consensus 250 leh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 250 LEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999998 99999998888899999999999999988877665544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0056 Score=53.35 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc---ccccHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHh---
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV---VPEYRKDAEDHLSK-AVKLNPSLADAWLCLGSCIWKK--- 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~--- 112 (331)
++++..+++.+.+...+.........+-+..|.++.. .|+. ++|+..+.. .....+.+++.+-.+|.+|-..
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr-e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR-EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE 233 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 5556666666655532222234455666777888887 8996 999999999 4455677899999999988532
Q ss_pred ------CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh-cC--CCCCchhH--HHHH
Q 020060 113 ------GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI-TL--DVKDGNSW--YNLG 181 (331)
Q Consensus 113 ------g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~--~~l~ 181 (331)
...++|+..|.++.++.|+...-.+++.++...|........ ..+-.-.+...+ +. .......| -.+.
T Consensus 234 s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~e-l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~ 312 (374)
T PF13281_consen 234 SNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEE-LRKIGVKLSSLLGRKGSLEKMQDYWDVATLL 312 (374)
T ss_pred cCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHH-HHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 347899999999999998775556777777766642221111 111111111111 11 11222333 3455
Q ss_pred HHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 182 NACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
.+.... |++++|+..++++.+..
T Consensus 313 Ea~vL~---------~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 313 EASVLA---------GDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHc---------CCHHHHHHHHHHHhhcC
Confidence 666666 99999999999999743
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0022 Score=60.16 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHH------------HHHHHhcCCCcHHHHHHHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDH------------LSKAVKLNPSLADAWLCLGS 107 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~------------~~~al~~~p~~~~~~~~lg~ 107 (331)
..++.|.+.+..+.. -.+|-+++..+....+. +-|.-+ ++++.+ +|+. .-...|.
T Consensus 742 G~MD~AfksI~~IkS---------~~vW~nmA~McVkT~RL-DVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAv 808 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIKS---------DSVWDNMASMCVKTRRL-DVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAV 808 (1416)
T ss_pred ccHHHHHHHHHHHhh---------hHHHHHHHHHhhhhccc-cHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHH
Confidence 566777777776653 24677777777776664 555443 333333 2322 2234466
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 108 CIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+-.++|..++|...|++.-..+ .+-..|...| .+.+|.+..+.--++. -...|++.+.-+...
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D-------LlNKlyQs~g--------~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD-------LLNKLYQSQG--------MWSEAFEIAETKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHhcc--------cHHHHHHHHhhcccee--hhhhHHHHHHHHHhh
Confidence 6678899999999998874432 2333444443 4777777665322221 234677777777766
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHh----------ch--------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc-
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEK----------DE--------RMKSNPDLYFNCATVNKYLENYERALSGFEASALK- 248 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~----------~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 248 (331)
++.+.|+++|+++-. .. ....++..|...|..+...|+.+.|+.+|..|-..
T Consensus 872 ---------~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 872 ---------RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred ---------ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 889999999987532 00 11345677888899999999999999999888642
Q ss_pred --------------------CCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhccccc
Q 020060 249 --------------------DPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVK 292 (331)
Q Consensus 249 --------------------~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~~~~~~ 292 (331)
...+..+ ..+++.+...|++.+|++-|.+|....+.++--+...
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1223445 8999999999999999999999887766655544433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=8e-05 Score=40.82 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 131 (331)
.+|+.+|.+|...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888888888888888887777764
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=52.84 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=85.4
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc--------CCCCCc----------hhHHHHHHHHHhhhhhcCCC
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT--------LDVKDG----------NSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~~~~~~~~ 194 (331)
.++..-|.-++..| +|.+|...|+.|+. -.|..+ ..+.+.+.|++..
T Consensus 179 ~~l~q~GN~lfk~~--------~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~------- 243 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLG--------RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK------- 243 (329)
T ss_pred HHHHHhhhhhhhhc--------cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH-------
Confidence 45666777777665 57777777777763 234443 3567888999988
Q ss_pred ChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|+|-++++.....++.. |.|..+|+..|.++...=+..+|...|.+++.++|.....
T Consensus 244 --~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 244 --EEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred --HHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999954 9999999999999999999999999999999999997654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0042 Score=50.07 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch---
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN--- 175 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 175 (331)
+..+..-+.+|...++|++|..++.++.+-...+..|+.-+..+-..+.... ....+.++..+++++..+.-.++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 3455566788899999999999999999777666555544444333221111 224689999999999876433221
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhc---
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALK--- 248 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 248 (331)
+-..|+.+-..+ ...++++|+..|++++..-...+. .+.+-..+.++.+...|.+|...+.+-...
T Consensus 110 AAmaleKAak~l-------env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 110 AAMALEKAAKAL-------ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred HHHHHHHHHHHh-------hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 122222222222 226899999999999974211221 244677888999999999999888776543
Q ss_pred -CCCCcHH-HHHHHHHHHHH--HHHHHHHhhhh
Q 020060 249 -DPSLNAT-EEVQMMVNLLD--KIENLLKGHAK 277 (331)
Q Consensus 249 -~~~~~~~-~~l~~~~~~l~--~~~~a~~~~~~ 277 (331)
+.-+... ..++.++..+- ++..+.+.+..
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 2222222 45555544443 77777665555
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.8e-05 Score=40.65 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=30.1
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+|+.+|.++..+|++++|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568999999999999999999999999999853
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.024 Score=49.03 Aligned_cols=201 Identities=15% Similarity=0.006 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChh
Q 020060 37 KLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP 116 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 116 (331)
.++.+++.+.+.++.+.. +|..+...+-.+=.-....|+. +.|+.+-.++-...|..+.++...-...+..|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~Gar-eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAR-EAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccH-HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 345666667777776664 3333322222221222357886 88999999999999999999988888889999999
Q ss_pred HHHHHHHHHHhcCC--ChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 117 AAKNCFNLALSKGP--NKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 117 ~A~~~~~~al~~~~--~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
.|++......+..- .+.+-...+.++....... -.-+...|.....++.++.|+....-..-+..++..
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~--ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d------- 276 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL--LDADPASARDDALEANKLAPDLVPAAVVAARALFRD------- 276 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc-------
Confidence 99999877654321 1111111111111110000 001356677777777777777766655555555555
Q ss_pred ChhhHHHHHHHHHHHHhch------------------------------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 195 DHSKLLQSLKAYQNAEKDE------------------------------RMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
|+.-++-..++.+-+.. ..|++.+.....+......|+|..|..--+.
T Consensus 277 --~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 277 --GNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred --cchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 55555554444444321 2256666666777777777777777777777
Q ss_pred HHhcCCCCc
Q 020060 245 SALKDPSLN 253 (331)
Q Consensus 245 al~~~~~~~ 253 (331)
+....|...
T Consensus 355 a~r~~pres 363 (531)
T COG3898 355 AAREAPRES 363 (531)
T ss_pred HhhhCchhh
Confidence 777777643
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=55.44 Aligned_cols=150 Identities=22% Similarity=0.189 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-----CChhHHHHHHHHHHh-------cCCChHHHhhHHHHHHHhccCc
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-----GDLPAAKNCFNLALS-------KGPNKKILCQLSMLERSMAQGS 149 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~-------~~~~~~~~~~l~~~~~~~g~~~ 149 (331)
..|..+++.+.+. .+..+...+|.||..- .|.+.|+.+|..+.. .. ...+.+.+|.+|..-....
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCc
Confidence 5688888887665 5677888899998765 689999999999977 22 1257788999988653211
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHH
Q 020060 150 ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN 229 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 229 (331)
.- +...|+.++.++.... ++.+.+.+|.++..-. ...++..|..+|..|.+ ..+..+.+++|.+|
T Consensus 306 ~~---d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~------~~~d~~~A~~yy~~Aa~----~G~~~A~~~la~~y 370 (552)
T KOG1550|consen 306 KI---DYEKALKLYTKAAELG--NPDAQYLLGVLYETGT------KERDYRRAFEYYSLAAK----AGHILAIYRLALCY 370 (552)
T ss_pred cc---cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC------ccccHHHHHHHHHHHHH----cCChHHHHHHHHHH
Confidence 11 6889999999988765 6778899999998651 12468899999999987 78999999999998
Q ss_pred HH----hhcHHHHHHHHHHHHhcC
Q 020060 230 KY----LENYERALSGFEASALKD 249 (331)
Q Consensus 230 ~~----~g~~~~A~~~~~~al~~~ 249 (331)
.. ..+...|..+|.++-...
T Consensus 371 ~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 371 ELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HhCCCcCCCHHHHHHHHHHHHHcc
Confidence 84 357999999999999988
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.016 Score=49.55 Aligned_cols=172 Identities=17% Similarity=0.098 Sum_probs=121.3
Q ss_pred HHHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCC--hHH
Q 020060 65 TYEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPN--KKI 134 (331)
Q Consensus 65 ~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~--~~~ 134 (331)
.....++..|.. ..+. .+|..+|+.+ .....+.+.+.+|.+|.. ..++.+|..+|+++.+.... ...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~-~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~ 150 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDK-TKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALA 150 (292)
T ss_pred HHHHHHHHHHHhccCccccH-HHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHH
Confidence 455556665554 3454 7899999944 445678899999999987 45999999999999988644 234
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
...++..+..-... .....+...|...|.++-... ++.+...+|.+|..- ..-..++.+|+.+|.++...
T Consensus 151 ~~~l~~~~~~g~~~-~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G-----~Gv~~d~~~A~~wy~~Aa~~-- 220 (292)
T COG0790 151 MYRLGLAYLSGLQA-LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG-----LGVPRDLKKAFRWYKKAAEQ-- 220 (292)
T ss_pred HHHHHHHHHcChhh-hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHHHC--
Confidence 67777777653100 002223568999999988765 778889999887643 22346999999999999873
Q ss_pred cCCChhHHhhHHHHHHHhh---------------cHHHHHHHHHHHHhcCCCC
Q 020060 215 MKSNPDLYFNCATVNKYLE---------------NYERALSGFEASALKDPSL 252 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~~ 252 (331)
.+...++.++ ++...| +...|..++..+-...+..
T Consensus 221 --g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 221 --GDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred --CCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 3488889999 666555 6666777777666655543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=61.79 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=95.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHH-HhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhc---
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKA-VKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLALSK--- 128 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 128 (331)
.+.+..++..+..++..|+| .+|.+.+... +...|. .-.+|.++|.++++.|.|..+..+|.++++.
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~-~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNH-PKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred CCCcHHHHHHHHHHHHhcch-HHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 35667888899999999998 8888877653 233333 2346789999999999999999999999951
Q ss_pred ------CCC----------hHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 129 ------GPN----------KKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 129 ------~~~----------~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
.|. ...+++.|..+...| +...|.++|.+++...-.+|..|..++.+++..
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g--------rPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG--------RPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcC--------CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 111 168899999999887 599999999999999999999999999998743
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0027 Score=57.95 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHH
Q 020060 81 RKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
.+.|...+....+..|+.+-..+..|.++...|+.++|+..|++++...... -.++.++.++..+. +
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~--------~ 320 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH--------D 320 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc--------h
Confidence 4789999999999999999999999999999999999999999998543332 46677899888775 6
Q ss_pred HHHHHHHHHHHhcCCCCCchhH-HHHHHHHHhhhhhcCCCChhhH-------HHHHHHHHHHHh
Q 020060 156 VEESIQHAKEAITLDVKDGNSW-YNLGNACLTSFFVTGSWDHSKL-------LQSLKAYQNAEK 211 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~ 211 (331)
|++|..++.+..+.+..+...| +..|.++... ++. ++|...|.++-.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l---------~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLML---------GREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh---------ccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999999776655444 4566666666 666 888888888765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=7e-05 Score=62.85 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE 233 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 233 (331)
|.+++|++.|..++.++|.....+...+.+++.+ ++...|+.-+..++.++ |+...-|-..|.....+|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl---------~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKL---------KKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLG 196 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeec---------cCCchhhhhhhhhhccC--cccccccchhhHHHHHhh
Confidence 4699999999999999999999999999999999 99999999999999966 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
++.+|...+..+.+++-+......+..+.-..+...+--
T Consensus 197 ~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~ 235 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHR 235 (377)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhch
Confidence 999999999999998876444355555555444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0073 Score=53.75 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-------CCC---
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-------LDV--- 171 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-------~~p--- 171 (331)
..+..--++..+...-++.-++|++++|+. .++..++.-... ...+|..+++++++ .+.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~----------Ti~Eae~l~rqAvkAgE~~lg~s~~~~ 241 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAS----------TIVEAEELLRQAVKAGEASLGKSQFLQ 241 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc----------CHHHHHHHHHHHHHHHHHhhchhhhhh
Confidence 445555677889999999999999999998 787777663221 13444444444443 211
Q ss_pred C-----------C----chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 172 K-----------D----GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 172 ~-----------~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
. + ..+-..+|++...+ |+.++|++.++..++....-++..++.++..++..++.|.
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarkl---------Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKL---------GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHh---------CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 0 0 22345789999988 9999999999999985411235577999999999999999
Q ss_pred HHHHHHHHH
Q 020060 237 RALSGFEAS 245 (331)
Q Consensus 237 ~A~~~~~~a 245 (331)
++...+.+.
T Consensus 313 d~q~lL~kY 321 (539)
T PF04184_consen 313 DVQALLAKY 321 (539)
T ss_pred HHHHHHHHh
Confidence 999998885
|
The molecular function of this protein is uncertain. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.046 Score=48.60 Aligned_cols=194 Identities=12% Similarity=-0.008 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCC---cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc---CCC-------cHHHHH
Q 020060 37 KLQNESDLALRLLGSVPPEQRKS---PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL---NPS-------LADAWL 103 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~ 103 (331)
..++.-++++...++.+...... .......+-.+..+-...|++ .+|++-...+... .|. .+..++
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~-~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~ 371 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDY-VEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM 371 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Confidence 44566677888877776431100 012223344455666678997 8888877766553 454 356778
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCh--H--HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-----
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALSKGPNK--K--ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG----- 174 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~--~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----- 174 (331)
.+|......+.++.|...|..+.+..... . .-.+++.+|.+.| .+...++-.-.+.|.+.
T Consensus 372 LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~-----------~~ed~y~~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 372 LLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIG-----------DAEDLYKALDLIGPLNTNSLSS 440 (629)
T ss_pred HHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhc-----------cHHHHHHHHHhcCCCCCCcchH
Confidence 88988889999999999999999887655 3 3345888888765 22233322223444421
Q ss_pred -----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 175 -----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 175 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
.+++..|...+.. +++.+|.....+.++.....+.. -.+..+|.+....|+..++.+..+-+
T Consensus 441 q~l~a~~~~v~glfaf~q---------n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQ---------NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 2334445544444 89999999999999743222222 22678899999999999999999888
Q ss_pred HhcCCC
Q 020060 246 ALKDPS 251 (331)
Q Consensus 246 l~~~~~ 251 (331)
+.+...
T Consensus 512 mqlAkK 517 (629)
T KOG2300|consen 512 MQLAKK 517 (629)
T ss_pred HHHHhc
Confidence 876544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.043 Score=47.50 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=133.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
..+.++.+-+..-...|+| +.|.+-|+-.+. +|.. .-.+..|-.--...|+.+.|..|-+++....|.- -++...-
T Consensus 118 qepLIhlLeAQaal~eG~~-~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDY-EDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred chHHHHHHHHHHHHhcCch-HHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 4566777778888889998 999999987765 3432 2223333333356799999999999999999987 4443333
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITL---DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
.....- |+++.|++........ .++.. -...+.++-....+. -.-+...|...-..++++. |
T Consensus 196 e~r~~~--------gdWd~AlkLvd~~~~~~vie~~~a--eR~rAvLLtAkA~s~---ldadp~~Ar~~A~~a~KL~--p 260 (531)
T COG3898 196 EARCAA--------GDWDGALKLVDAQRAAKVIEKDVA--ERSRAVLLTAKAMSL---LDADPASARDDALEANKLA--P 260 (531)
T ss_pred HHHHhc--------CChHHHHHHHHHHHHHHhhchhhH--HHHHHHHHHHHHHHH---hcCChHHHHHHHHHHhhcC--C
Confidence 333333 4699999998776553 22221 111222211110000 1145778888888999855 9
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+..-.-..-+..++..|+..++-..++.+++..|... ++.+|.....-+.++....++.+|..+
T Consensus 261 dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 261 DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----IALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----HHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 9888888889999999999999999999999999854 444444444444455555555555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.029 Score=43.84 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
..+++++|+..++.++....+. ..+-.+|+.+.... |.+++|+..+..... ....+..-...|.+
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~---------~k~D~AL~~L~t~~~---~~w~~~~~elrGDi 168 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ---------KKADAALKTLDTIKE---ESWAAIVAELRGDI 168 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHhcccc---ccHHHHHHHHhhhH
Confidence 3356889999888888643322 23456788888887 999999888776542 12233446678999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+...|+-++|...|++++..+++...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCChHH
Confidence 99999999999999999998866543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00048 Score=37.27 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367788888888888888888888888887763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00065 Score=36.71 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.4
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
++++.+|.++...|++++|...|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999999974
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=59.30 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=78.0
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
......|+...|+.|+.+++-..|.. ..+.+++.++..-| ..-.|-..+.+++.+....|-.++.+|.++
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~--------~~~da~~~l~q~l~~~~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYG--------LHLDATKLLLQALAINSSEPLTFLSLGNAY 686 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhh--------hhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence 33345688888888888888888766 56777888777655 367788888888888877777888888888
Q ss_pred HhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 185 LTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
+.+ .+.+.|++.|..+++.. |.++..-..+-.+..
T Consensus 687 l~l---------~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 687 LAL---------KNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HHH---------hhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 888 88888888888888854 888777555544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00057 Score=37.95 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+|.+||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999996654
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.01 Score=41.82 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=64.4
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCh-H---HHhhHHHHHHHhccCchh---HHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 106 GSCIWKKGDLPAAKNCFNLALSKGPNK-K---ILCQLSMLERSMAQGSEN---QAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~~~~-~---~~~~l~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+.-++..|++-+|++..+..+...+++ . .+..-|.++..++...++ +..-.-.+++++.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 444555566666666666655555444 1 222345555444332111 223366789999999999999998999
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.+|.-+... ..|++++...++++..
T Consensus 83 ~la~~l~s~---------~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSV---------KYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhH---------HHHHHHHHHHHHHhcc
Confidence 999887766 7888999888888863
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.027 Score=49.52 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=101.0
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--------------------------CCh-H---HHhhHHH
Q 020060 91 AVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--------------------------PNK-K---ILCQLSM 140 (331)
Q Consensus 91 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~-~---~~~~l~~ 140 (331)
.+..+|.+.+++..++.++..+|+.+.|.+..++|+-.. +.| . +++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 356789999999999999999999999999988885221 111 1 2223333
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch--h-cC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE--R-MK 216 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~-~~ 216 (331)
.+. +.|-+..|.++.+-.+.++|. +|-.....-..|.-. .++++--+..++...... . ..
T Consensus 112 ~L~--------~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr--------s~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 112 SLG--------RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR--------SRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred HHH--------hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh--------cCCHHHHHHHHHhHhhhhhhhhhh
Confidence 333 445699999999999999998 665544443333322 166666666666544311 0 11
Q ss_pred CChhHHhhHHHHHHHhhcH---------------HHHHHHHHHHHhcCCCC
Q 020060 217 SNPDLYFNCATVNKYLENY---------------ERALSGFEASALKDPSL 252 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 252 (331)
.-|...+..+.+++..++- +.|...+.+|+...|.-
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 2456788899999999888 89999999999876653
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0028 Score=38.49 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=33.4
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHH
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQ 259 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 259 (331)
+.++.+|..++++|+|.+|..+.+.+++++|++.++..+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4578999999999999999999999999999999874443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00031 Score=39.07 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
+|.++|.+|..+|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999976543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.006 Score=55.19 Aligned_cols=134 Identities=10% Similarity=0.168 Sum_probs=103.5
Q ss_pred HHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHhhhhhcCCCChh
Q 020060 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG--NSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 120 ~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
.....+++..|.+..+..++..|+++. |+..+|+.++..++-..|... .+...+|.++... |
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~-------G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~Ra---------G 263 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIK-------GEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRA---------G 263 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHc-------CChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHc---------c
Confidence 345666777777777777888888764 579999999999998877643 4678899999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a 271 (331)
...+|--.+..|+... +.-..-++.+|.++..++++...+.+|..+.+.+|....+ .....+...+.+...+
T Consensus 264 ~sadA~iILhAA~~dA--~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~k 336 (886)
T KOG4507|consen 264 FSADAAVILHAALDDA--DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQK 336 (886)
T ss_pred cccchhheeehhccCC--ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHH
Confidence 8888988888887633 6666669999999999999999999999999999987765 4444444333333333
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.019 Score=41.87 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=64.9
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
..+..+++++++... .+..+..+.+.+++..++........+..+.++..+++.++|+.++.+....++..|++
T Consensus 31 s~~s~f~lAwaLV~S------~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRS------RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcc------cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 456778899988865 24578889999999999722223355778999999999999999999999999999999
Q ss_pred cHHHHHH
Q 020060 253 NATEEVQ 259 (331)
Q Consensus 253 ~~~~~l~ 259 (331)
.++..+-
T Consensus 105 ~Qa~~Lk 111 (149)
T KOG3364|consen 105 RQALELK 111 (149)
T ss_pred HHHHHHH
Confidence 9764443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.086 Score=45.09 Aligned_cols=178 Identities=19% Similarity=0.180 Sum_probs=123.9
Q ss_pred hhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhcc
Q 020060 72 KILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQ 147 (331)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~ 147 (331)
......+++ ..|...+.++... .++.+...+|.+|... .+..+|..+|+.+.... ...+.+.+|.++..-.-
T Consensus 49 ~~~~~~~~~-~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDY-AKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-LAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccH-HHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-cHHHHHhHHHHHhcCCC
Confidence 334456676 8888888888763 3347888889888764 56888999999554332 11677788888775311
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKD-GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
...+..+|...|+++.+..... ..+...+|.+|..-....+ ...+...|...|.++-. ..++.+.+++|
T Consensus 125 ----v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~--~~~~~~~A~~~~~~aa~----~~~~~a~~~lg 194 (292)
T COG0790 125 ----VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA--VAYDDKKALYLYRKAAE----LGNPDAQLLLG 194 (292)
T ss_pred ----cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc--ccHHHHhHHHHHHHHHH----hcCHHHHHHHH
Confidence 1236899999999999875433 3447888888775310000 11244589999999976 55899999999
Q ss_pred HHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 227 TVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 227 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
.+|.. ..++.+|..+|.++-.... ... ..++ ++...|
T Consensus 195 ~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 195 RMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 88865 4589999999999999887 444 6666 555444
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.071 Score=43.69 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-CChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHH-
Q 020060 81 RKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-GDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVE- 157 (331)
Q Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~- 157 (331)
...|+.+-..+|.++|.+-.+|...-.+...+ .+..+-++++...++-+|++ .+|...-.+...+|+ ..
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d--------~s~ 130 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD--------PSF 130 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC--------ccc
Confidence 46788888888888888877777766666554 35677778888888888888 777666666655553 33
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH------H
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK------Y 231 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~------~ 231 (331)
.-+++.+.++..+.++..+|...-.+.... +.++.-+.+....++.+ -.|-++|...-.+.. .
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F---------~~~~~EL~y~~~Lle~D--i~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFF---------KDYEDELAYADELLEED--IRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHH---------hhHHHHHHHHHHHHHHh--hhccchhheeeEEEEeccCCcc
Confidence 556777777777777878888777777766 77777777777777643 444444332211111 1
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
.-..+.-+.+..+.+.+.|++..+ ..+.-++
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 122344456666667777777766 4443333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.023 Score=48.09 Aligned_cols=157 Identities=8% Similarity=-0.142 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-CCCCch---h
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-DVKDGN---S 176 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~~~~---~ 176 (331)
...-+.+.+..|++.+|...+.+.++-.|++ -++..--.+++.+| +...-...+++.+-. +|+.|- +
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G--------~~~~~k~ai~kIip~wn~dlp~~sYv 177 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG--------NQIGKKNAIEKIIPKWNADLPCYSYV 177 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhcc--------chhhhhhHHHHhccccCCCCcHHHHH
Confidence 3445566788899999999999999999999 55555556666666 466667777777765 555543 3
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc-HH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN-AT 255 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 255 (331)
...++..+... |-|++|.+..+++++++ +.+.-+....+.++...|++.++.+.+.+.-..-...- .+
T Consensus 178 ~GmyaFgL~E~---------g~y~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla 246 (491)
T KOG2610|consen 178 HGMYAFGLEEC---------GIYDDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA 246 (491)
T ss_pred HHHHHhhHHHh---------ccchhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH
Confidence 33455666666 99999999999999976 99988889999999999999999999877543322111 11
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhh
Q 020060 256 ----EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 256 ----~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
..-+..+..-+.++.+++.|..
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHH
Confidence 3344455555777777766554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.022 Score=43.08 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=50.1
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+...++..+...| ++++|+..+++++..+|.+..+|..+..+|... |+...|+..|++..+
T Consensus 64 ~~~~l~~~~~~~~--------~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~---------g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAG--------DYEEALRLLQRALALDPYDEEAYRLLMRALAAQ---------GRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT---------T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC---------cCHHHHHHHHHHHHH
Confidence 4444555666554 699999999999999999999999999999999 999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.05 Score=44.53 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=115.2
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHH
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIV 156 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~ 156 (331)
.+| .++..+|+..+..+...+ .|+.....++.++|.+ .+|...-.++..++ .+.
T Consensus 40 e~f-r~~m~YfRAI~~~~E~S~-----------------RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~-------~dL 94 (318)
T KOG0530|consen 40 EDF-RDVMDYFRAIIAKNEKSP-----------------RALQLTEDAIRLNPANYTVWQYRRVILRHLM-------SDL 94 (318)
T ss_pred hhH-HHHHHHHHHHHhccccCH-----------------HHHHHHHHHHHhCcccchHHHHHHHHHHHhH-------HHH
Confidence 455 677777776666655544 4556666778899999 88887778888776 468
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH-HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 157 EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL-QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 157 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
.+-++++.+.++.+|++.++|...-.+.... |++. .-++....++..+ ..+-.+|...-.+...-+.+
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l---------~d~s~rELef~~~~l~~D--aKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELL---------GDPSFRELEFTKLMLDDD--AKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHh---------cCcccchHHHHHHHHhcc--ccchhhhHHHHHHHHHHhhH
Confidence 8999999999999999999999999988888 7777 7788888888854 88899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcH
Q 020060 236 ERALSGFEASALKDPSLNA 254 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~ 254 (331)
+.-+.+..+.++.+-.+..
T Consensus 164 ~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 164 EDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHHHHHHHHHHhhhccc
Confidence 9999999999987765443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00041 Score=58.36 Aligned_cols=92 Identities=24% Similarity=0.169 Sum_probs=78.2
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCc
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGS 149 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~ 149 (331)
+.-.+..|.+ ++|++.|..++.++|..+..+...|.++..+++...|++-+..+++++|+. ..+-..+.....+|
T Consensus 121 A~eAln~G~~-~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg--- 196 (377)
T KOG1308|consen 121 ASEALNDGEF-DTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG--- 196 (377)
T ss_pred HHHHhcCcch-hhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh---
Confidence 3344567887 999999999999999999999999999999999999999999999999998 44555566666665
Q ss_pred hhHHHHHHHHHHHHHHHhcCCC
Q 020060 150 ENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p 171 (331)
++++|...+..+.+++-
T Consensus 197 -----~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 197 -----NWEEAAHDLALACKLDY 213 (377)
T ss_pred -----chHHHHHHHHHHHhccc
Confidence 59999999999988753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.018 Score=44.99 Aligned_cols=101 Identities=14% Similarity=-0.017 Sum_probs=79.0
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSM 140 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 140 (331)
......++..+...+++ ++|+..++.++....+. .-+-..+|.+....|.+++|+..+.....-+-....-...|.
T Consensus 89 ~laaL~lAk~~ve~~~~-d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGD 167 (207)
T COG2976 89 VLAALELAKAEVEANNL-DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHHhhccH-HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhh
Confidence 44566788999999997 99999999999765443 346688999999999999999998765332222234556899
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
++...| +-++|...|.++++.+++.
T Consensus 168 ill~kg--------~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 168 ILLAKG--------DKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHcC--------chHHHHHHHHHHHHccCCh
Confidence 999887 4899999999999987544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0023 Score=33.77 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.0
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+++.+|.++..+|++++|..+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999988863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.04 Score=45.96 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch--
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN-- 175 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 175 (331)
.+.-..-+.-....|++.+|...|..++...|++ .+...++.++...| +.+.|...+... |....
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g--------~~e~A~~iL~~l----P~~~~~~ 201 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAG--------DVEAAQAILAAL----PLQAQDK 201 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC--------ChHHHHHHHHhC----cccchhh
Confidence 3344556667788999999999999999999999 88899999999887 488887776542 32221
Q ss_pred hHHH-HH--HHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 176 SWYN-LG--NACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 176 ~~~~-l~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+.. .+ ..+... ....+. ..+++.+. ..|+|..+-+.+|..+...|++++|+..+-..++.+...
T Consensus 202 ~~~~l~a~i~ll~qa---------a~~~~~-~~l~~~~a--adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 202 AAHGLQAQIELLEQA---------AATPEI-QDLQRRLA--ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHHHHHHHHH---------hcCCCH-HHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 1111 11 111111 111111 22333344 459999999999999999999999999999999887654
Q ss_pred cH--H-HHHHHHHHHHHHHHHHHHh
Q 020060 253 NA--T-EEVQMMVNLLDKIENLLKG 274 (331)
Q Consensus 253 ~~--~-~~l~~~~~~l~~~~~a~~~ 274 (331)
.. . ..+-.++...|..+.....
T Consensus 270 ~d~~~Rk~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 270 EDGEARKTLLELFEAFGPADPLVLA 294 (304)
T ss_pred cCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 33 3 6666777766655554433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0067 Score=45.99 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=51.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
..++..++..+...|++ ++|+..+++++..+|.+..+|..+..+|...|+..+|+..|++...
T Consensus 62 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDY-EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34555667778888997 9999999999999999999999999999999999999999988743
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.051 Score=47.76 Aligned_cols=128 Identities=19% Similarity=0.153 Sum_probs=97.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CC-
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP----SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--PN- 131 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~- 131 (331)
.+......|...+.+....|.+ +.|...+.++....+ ..+.+.+..+...+..|+..+|+..++..+... ..
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~-~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNF-QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 3567788899999999999998 999999999988652 257788889999999999999999998888711 10
Q ss_pred ------------------------h-HHHhhHHHHHHHhccCchh-----HHHHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 020060 132 ------------------------K-KILCQLSMLERSMAQGSEN-----QAEIVEESIQHAKEAITLDVKDGNSWYNLG 181 (331)
Q Consensus 132 ------------------------~-~~~~~l~~~~~~~g~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 181 (331)
. ......+.++..+|..... ..+..+++...|.++++.+|+...+|+.+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 0 1112234444444432211 125688999999999999999999999999
Q ss_pred HHHHhh
Q 020060 182 NACLTS 187 (331)
Q Consensus 182 ~~~~~~ 187 (331)
..+...
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 988766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.13 Score=44.70 Aligned_cols=152 Identities=15% Similarity=0.109 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCC------------hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGD------------LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQ 152 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~ 152 (331)
.-|.+.++-+|.+.++|..+.......-. .+.-+..|++|++.+|++ ..+..+-.....+.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~------ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW------ 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC------
Confidence 44778888999999999988876554422 456788999999999987 44433333333332
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-hcCC--------C-----
Q 020060 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMKS--------N----- 218 (331)
Q Consensus 153 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~--------~----- 218 (331)
..++..+-+++++..+|+++..|...-......+ ..-.+......|.+++..- .... -
T Consensus 80 --~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~------~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~ 151 (321)
T PF08424_consen 80 --DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNF------ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEE 151 (321)
T ss_pred --CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh------ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Confidence 3667788899999999999999876555444320 1134566677777766510 0000 0
Q ss_pred --hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 219 --PDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 219 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..++..+.......|..+.|+..++-.++++=-
T Consensus 152 ~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 152 FMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 122567777788999999999999999997643
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0024 Score=33.72 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 131 (331)
.++..+|.++...|++++|+.+|+++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677788888888888888888888777664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.066 Score=38.20 Aligned_cols=100 Identities=21% Similarity=0.164 Sum_probs=65.8
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------------chhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------------GNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
++..|+....++ ..+-|++|...++++.+...+- ...+-.|+.++..+ |+|++
T Consensus 9 aY~aLs~ae~ql------~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L---------gry~e 73 (144)
T PF12968_consen 9 AYMALSDAERQL------QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL---------GRYDE 73 (144)
T ss_dssp HHHHHHHHHHHH------HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT---------T-HHH
T ss_pred HHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh---------ccHHH
Confidence 344455555544 3467999999999998754322 23556778888888 99999
Q ss_pred HHHHHHHHHhc-----hhcCCChhH----HhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 202 SLKAYQNAEKD-----ERMKSNPDL----YFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 202 A~~~~~~al~~-----~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
++..-++++.. ....+.... .++.|..+..+|+.++|+..|+.+-++
T Consensus 74 ~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 74 CLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 98888888751 111333333 467788888888888888888887653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.017 Score=39.61 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhc
Q 020060 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMA 146 (331)
Q Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g 146 (331)
..+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. .+...+-.++..+|
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 35678899999999999999999999999999999999999999998776 45555555555555
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.27 Score=46.87 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=109.0
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhh-cccccHHHHHHHHHHHHhcCCC--cH----HHHHHHH
Q 020060 34 KVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILD-VVPEYRKDAEDHLSKAVKLNPS--LA----DAWLCLG 106 (331)
Q Consensus 34 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~lg 106 (331)
...+..+-+..++.+|+.+.......|...+.+.+.+|.++. ...++ +.|..++.+++.+... .. .+.+.++
T Consensus 29 ~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~-~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~ 107 (608)
T PF10345_consen 29 QLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENL-DLAETYLEKAILLCERHRLTDLKFRCQFLLA 107 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 344566778888888887776555678899999999999998 67786 9999999999887643 32 3456678
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC--CCchhHH-
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV--KDGNSWY- 178 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~- 178 (331)
.++.+.+... |...+++.++..... ...+.+-.+...+ ..+++..|++.++....... .++.+..
T Consensus 108 ~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~------~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 108 RIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL------QHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH------hcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 8888888777 999999999876552 2222232222221 11368889999998887653 3333222
Q ss_pred -H--HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 179 -N--LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 179 -~--l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
. .+.+.... +..+++++..++++.
T Consensus 181 ~~l~~~~l~l~~---------~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 181 ASLSEALLHLRR---------GSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHhcC---------CCchhHHHHHHHHHH
Confidence 2 23333333 667777777777754
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.19 Score=47.25 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=123.8
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc-----ccccHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV-----VPEYRKDAEDHLSKAVKL-----NPSLADAWLCLGSCIWK 111 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~ 111 (331)
...+...++.... .......+.+|.++.. ..+. +.|+.+|+.+..- .-..+.+.+.+|.+|.+
T Consensus 228 ~~~a~~~~~~~a~------~g~~~a~~~~g~~y~~G~~g~~~d~-e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAK------LGHSEAQYALGICYLAGTYGVTQDL-ESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHh------hcchHHHHHHHHHHhhccccccccH-HHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhc
Confidence 3445555554432 1233444455655554 3464 8999999999771 11256688999999998
Q ss_pred hC-----ChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 020060 112 KG-----DLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT 186 (331)
Q Consensus 112 ~g-----~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 186 (331)
.. ++..|+.+|.++...... .+.+.+|.++..-. ..+++..|.++|..|.+. .+..+.+.++.+|..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~-----~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGT-----KERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCC-----ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 53 678899999999877644 56777888776443 124688999999998865 467788889988875
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-hcHHHHHHHHHHHHhc
Q 020060 187 SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-ENYERALSGFEASALK 248 (331)
Q Consensus 187 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 248 (331)
- ..-..+...|..++.++.. .+++.+.+.++..+... +++..+...+......
T Consensus 373 G-----~gv~r~~~~A~~~~k~aA~----~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 373 G-----LGVERNLELAFAYYKKAAE----KGNPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred C-----CCcCCCHHHHHHHHHHHHH----ccChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 3 1123588999999999987 44667666666666543 6666666555544443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0064 Score=48.56 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=55.1
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.....++. +.|.+.|.+++.+.|.....|+.+|......|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~-~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDA-EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCCh-HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567886 889999999999999999999999999999999999999999999999988
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.31 Score=44.21 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--------------hhHHHHHHHHHHhcC
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGD--------------LPAAKNCFNLALSKG 129 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~ 129 (331)
-.-.+++++..-+-.++.|+.-+..+...++ -+++..+|++++...
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 3445666666667777777766555555444 567777777776543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.39 Score=40.82 Aligned_cols=122 Identities=17% Similarity=0.051 Sum_probs=87.9
Q ss_pred hcccccHHHHHHHHHHHHhcC----CCc----HHHHHHHHHHHHHhC-ChhHHHHHHHHHHhc----CCCh---------
Q 020060 75 DVVPEYRKDAEDHLSKAVKLN----PSL----ADAWLCLGSCIWKKG-DLPAAKNCFNLALSK----GPNK--------- 132 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~~~~--------- 132 (331)
...|++ +.|..++.++-... |+. ...+++.|......+ +++.|..+++++.++ .+..
T Consensus 4 ~~~~~~-~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDL-DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCH-HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356786 88888888876543 332 467888999999999 999999999999887 2211
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
.++..++.++...+. ....++|..+.+.+-...|+.+..+...-.++... ++.+.+.+.+.+.+
T Consensus 83 r~~iL~~La~~~l~~~~-----~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~---------~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDT-----YESVEKALNALRLLESEYGNKPEVFLLKLEILLKS---------FDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhcc---------CChhHHHHHHHHHH
Confidence 355567777776652 23477788888888777888777774444444444 77888888888888
Q ss_pred h
Q 020060 211 K 211 (331)
Q Consensus 211 ~ 211 (331)
.
T Consensus 149 ~ 149 (278)
T PF08631_consen 149 R 149 (278)
T ss_pred H
Confidence 6
|
It is also involved in sporulation []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.022 Score=34.55 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.++.+|..+.+.|+|++|..+.+.++++.|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 345677777777777777777777777777777
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.79 Score=44.98 Aligned_cols=202 Identities=13% Similarity=0.064 Sum_probs=129.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~ 137 (331)
..+.+|..+|.+-...|.. .+|++.|-++ +++..+...-.+-.+.|.|++-++++.-+-+..... ...+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v-~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLV-KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCch-HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 3467899999999999996 9999998765 667788888888899999999999998876655433 21221
Q ss_pred HHHH------HHHh-ccCchh---------HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 138 LSML------ERSM-AQGSEN---------QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 138 l~~~------~~~~-g~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
++.. ..-+ |....+ ..+.|+.|.-+|. +..-|..|+..+..+ |+|..
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~L---------geyQ~ 1238 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYL---------GEYQG 1238 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHH---------HHHHH
Confidence 2111 1111 110000 2334555555554 345677888888888 99999
Q ss_pred HHHHHHHHHhchhcC-----------------------CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 202 SLKAYQNAEKDERMK-----------------------SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 202 A~~~~~~al~~~~~~-----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
|+...+++-...... -+++-+-.+...|...|-|++-+..++.++-+...+-.. ..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 999888876421000 012224566677888899999999999999888777665 66
Q ss_pred HHHHHHHH--HHHHHHHHhhhhhhhHHHHHh
Q 020060 258 VQMMVNLL--DKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 258 l~~~~~~l--~~~~~a~~~~~~a~~l~~~~~ 286 (331)
++.++.+- .+.-+-++.|..-..+...++
T Consensus 1319 LaiLYskykp~km~EHl~LFwsRvNipKviR 1349 (1666)
T KOG0985|consen 1319 LAILYSKYKPEKMMEHLKLFWSRVNIPKVIR 1349 (1666)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcchHHHHH
Confidence 66555432 223333344444444444333
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=49.43 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=62.3
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
...+.-....|+. ++|...|..|++++|++++++..+|......++.-+|-.+|-+++.++|.+ .++.+.+.
T Consensus 120 l~~A~~~~~~Gk~-ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKL-EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3444455667885 999999999999999999999999999999999999999999999999998 77666543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=48.64 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
|+.++|...|+.++.+. |.+++++..+|.+....++.-+|-.+|-+|+.++|.+..+ .+.++..
T Consensus 130 Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred cchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 88999999999999955 9999999999999988899999999999999999988776 5555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.041 Score=46.15 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
...++-.+|... ++++.|+.+.+..+... |+++.-+.-.|.+|.++|.+..|...++..++..|+++.+
T Consensus 183 ml~nLK~~~~~~---------~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEE---------KQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHc---------CcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 345677777777 99999999999999955 9999999999999999999999999999999999999987
Q ss_pred HHHHHH
Q 020060 256 EEVQMM 261 (331)
Q Consensus 256 ~~l~~~ 261 (331)
..+...
T Consensus 252 ~~ik~q 257 (269)
T PRK10941 252 EMIRAQ 257 (269)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.051 Score=37.25 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc--HH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN--AT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
+..+++.+..+ |++..+.+.+|..+...|++++|+..+-.+++.++++. .+ ..+-.++..+|.-+..+..|.
T Consensus 8 ~~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 44556666633 77878888888888888888888888888877777652 33 666667777776555554443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.14 Score=45.73 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhC--ChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 99 ADAWLCLGSCIWKKG--DLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+.++.++|..+...| +...+++|++..+...|.. .....+|.+++.-. ++++.|...++++..+...
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT-------~N~elAksHLekA~~i~~~ 79 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYT-------KNVELAKSHLEKAWLISKS 79 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHcc
Confidence 456778888888888 8889999999999888877 45566788777654 5789999999998776433
Q ss_pred Cc-------hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHH
Q 020060 173 DG-------NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 173 ~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~ 241 (331)
-| ++...|+.+|... + ..+..|...+.++++.. ...| ...+.++.++....++..|.+.
T Consensus 80 ip~fydvKf~a~SlLa~lh~~~-------~-~s~~~~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 80 IPSFYDVKFQAASLLAHLHHQL-------A-QSFPPAKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred cccHHhhhhHHHHHHHHHHHHh-------c-CCCchHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 33 3445677877776 1 27788999999999854 5555 3368899999999999999987
Q ss_pred HHH
Q 020060 242 FEA 244 (331)
Q Consensus 242 ~~~ 244 (331)
+.-
T Consensus 150 Lav 152 (629)
T KOG2300|consen 150 LAV 152 (629)
T ss_pred Hhc
Confidence 443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.33 Score=39.39 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred CcchhhHHHHHhhhhhhccccc------HHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 59 SPTQRATYEYLKGKILDVVPEY------RKDAEDHLSKAVKLNP------SLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~------~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
.+...+.++..+|.+|...|+- ...|...|.+++.... +.....+.+|.++.+.|++++|+.+|.+++
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5557788999999999999983 2456666666665432 225688999999999999999999999999
Q ss_pred hcCCCh--HHHhhHHH
Q 020060 127 SKGPNK--KILCQLSM 140 (331)
Q Consensus 127 ~~~~~~--~~~~~l~~ 140 (331)
...... ..+..++.
T Consensus 193 ~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 193 GSKKASKEPKLKDMAR 208 (214)
T ss_pred cCCCCCCcHHHHHHHH
Confidence 765444 24444444
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.14 Score=50.53 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
..+.|++|+..|++.-...|... ++.+.+|.+++......+ +...+++|+..|++.- ..|.-|--|...|.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQG--DPRDFTQALSEFSYLH---GGVGAPLEYLGKALV 561 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcC--ChHHHHHHHHHHHHhc---CCCCCchHHHhHHHH
Confidence 56789999999999999998654 577899999988765555 3358899999999875 346667779999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
|.++|++++-+++|.-|++..|+++.. .....+..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR 598 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 999999999999999999999999875 444444433
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.075 Score=37.92 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHhch-hcCC---------ChhHHhhHHHHHHHhhcHHHHHHHHHHHHh-------cCCCCc----HH
Q 020060 197 SKLLQSLKAYQNAEKDE-RMKS---------NPDLYFNCATVNKYLENYERALSGFEASAL-------KDPSLN----AT 255 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~-~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~~~~~----~~ 255 (331)
|-|++|...+.++.... ..|. +.-++..|+..+..+|+|++++..-.+++. ++.+.. .+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 88999999999999632 1121 234478889999999999998887777775 344432 23
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
...+..+..+|+.++|++.|..+-++..
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 7778888999999999999999987654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.52 Score=43.15 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHHHHhc------------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc-----C-----------
Q 020060 78 PEYRKDAEDHLSKAVKL------------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK-----G----------- 129 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~----------- 129 (331)
..| ++|...|.-+... .|.+.+.+..++.++...|+.+-|.....+++-. .
T Consensus 252 ~sY-eqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 252 NSY-EQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred hHH-HHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 455 7777777776654 4667889999999999999999888888777521 1
Q ss_pred -----CChH-HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHH
Q 020060 130 -----PNKK-ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 130 -----~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A 202 (331)
|.+. .+..+-.....+. +.|-+..|.++++-.+.++|. +|.+...+-..|... ..+|.=-
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~-----~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr--------areYqwi 397 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLA-----QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR--------AREYQWI 397 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH--------HHhHHHH
Confidence 2221 2222222222222 456799999999999999998 887766666655533 1455544
Q ss_pred HHHHHHHHhchhcCCChhHHhhH--HHHHHHhhc---HHHHHHHHHHHHhcCC
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNC--ATVNKYLEN---YERALSGFEASALKDP 250 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~l--a~~~~~~g~---~~~A~~~~~~al~~~~ 250 (331)
+..++..-..+....-|..-+.+ |..|..... -..|...+.+|+...|
T Consensus 398 I~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 398 IELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 55554443222222233333444 444444444 5678889999998777
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.55 Score=44.04 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=18.0
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
|++...+-.+|..+...|--++|.+.|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55556666666666666666666665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.85 Score=38.75 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=126.1
Q ss_pred HHHHHHHHHhhhhccCCCCccchhhhHHHHHHHHHHhcC---CCCCCCCCcchhhHHHHHhhhhhhccccc--HHHHHHH
Q 020060 13 TKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGS---VPPEQRKSPTQRATYEYLKGKILDVVPEY--RKDAEDH 87 (331)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~A~~~ 87 (331)
....+-+|.+....+... ....+.-.-++.|.++++. ...........+..++..++.++...+.+ ..+|...
T Consensus 32 ~~La~~~yn~G~~l~~~~--~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~ 109 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKK--DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 444455555555554444 1223333445666777644 22221113346778888999999987764 1346666
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 88 LSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 88 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
++.+-.-.|+.+..+...-.+....++.+++.+.+.+.+.-.+-. ..+......+..+. ......+..++...
T Consensus 110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~------~~~~~~a~~~ld~~ 183 (278)
T PF08631_consen 110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLA------EKSPELAAFCLDYL 183 (278)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHH------hhCcHHHHHHHHHH
Confidence 666666678877777555555555899999999999998766522 22222222222221 12355677777666
Q ss_pred hcC--CCCCchhHHHHHHHHHhhhhhcCCC---ChhhHHHHHHHHHHHHhchhcCCChh-------HHhhHHHHHHHhhc
Q 020060 167 ITL--DVKDGNSWYNLGNACLTSFFVTGSW---DHSKLLQSLKAYQNAEKDERMKSNPD-------LYFNCATVNKYLEN 234 (331)
Q Consensus 167 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~la~~~~~~g~ 234 (331)
+.. .|.... |.....+.... ...... ..++.+.....+....+....|-.+. ...+.|..+++.++
T Consensus 184 l~~r~~~~~~~-~~e~~vl~~~~-~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~ 261 (278)
T PF08631_consen 184 LLNRFKSSEDQ-WLEKLVLTRVL-LTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKN 261 (278)
T ss_pred HHHHhCCChhH-HHHHHHHHHHH-HHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 643 332222 54444443322 111111 11234444444443333222233332 26888999999999
Q ss_pred HHHHHHHHHHHH
Q 020060 235 YERALSGFEASA 246 (331)
Q Consensus 235 ~~~A~~~~~~al 246 (331)
|++|..+|+-++
T Consensus 262 y~~A~~w~~~al 273 (278)
T PF08631_consen 262 YDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHH
Confidence 999999999776
|
It is also involved in sporulation []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1 Score=43.43 Aligned_cols=175 Identities=13% Similarity=-0.014 Sum_probs=114.5
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
..+..--..|.+....|++ +.|+.+.+.++..-|.. ..++..+|.+..-.|++++|..+...+.+.....
T Consensus 456 l~ae~~aL~a~val~~~~~-e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 456 LLAEFQALRAQVALNRGDP-EEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 4455666778888899996 99999999999987754 4577889999999999999999999998875433
Q ss_pred -HH--HhhHHHHHHHhccCchhHHHHHHHHHHHHHHH----hcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH
Q 020060 133 -KI--LCQLSMLERSMAQGSENQAEIVEESIQHAKEA----ITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA 205 (331)
Q Consensus 133 -~~--~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~ 205 (331)
.. ....+.++...|+ . .+.+....+... +...|-+.......+.++... -+++.+...
T Consensus 535 l~~~~~~~~s~il~~qGq-----~-~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~---------~r~~~~~~e 599 (894)
T COG2909 535 LALWSLLQQSEILEAQGQ-----V-ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAW---------LRLDLAEAE 599 (894)
T ss_pred HHHHHHHHHHHHHHHhhH-----H-HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH---------HHHhhhhHH
Confidence 22 3335666666662 1 133333333332 223344444444444444433 345666655
Q ss_pred HHHHHhch--hcCCChhH---HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 206 YQNAEKDE--RMKSNPDL---YFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 206 ~~~al~~~--~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
..+.++.. ..|..... ++.++.+....|++++|...+.....+..+.
T Consensus 600 ar~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 600 ARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 55555421 11222222 3589999999999999999999887764443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.2 Score=35.47 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=68.5
Q ss_pred hhhhhhcccccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCC-----------hhHHHHHHHHHHhcCCCh-HH
Q 020060 70 KGKILDVVPEYRKDAEDHLSKAVKLNPSLA---DAWLCLGSCIWKKGD-----------LPAAKNCFNLALSKGPNK-KI 134 (331)
Q Consensus 70 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~-~~ 134 (331)
++..++..|++ -+|++..+..+...+++. ..+..-|.++..... .-.|+++|.++..+.|.. ..
T Consensus 2 ~A~~~~~rGnh-iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNH-IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCH-HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 35667788996 999999999999988776 455566777765432 346899999999999988 66
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
++.+|.-+.. ...|++++.-.++++.+.
T Consensus 81 L~~la~~l~s--------~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 81 LFELASQLGS--------VKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhhh--------HHHHHHHHHHHHHHhccc
Confidence 6666664332 235889999988888653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.096 Score=43.95 Aligned_cols=70 Identities=9% Similarity=-0.118 Sum_probs=64.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.-.+.+.++-.++...+++ +.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|..-++..++..|++
T Consensus 179 il~Rml~nLK~~~~~~~~~-~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQM-ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 3456677788889999998 999999999999999999999999999999999999999999999999988
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.19 Score=40.72 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhh-------HHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSK-------LLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
+..+..++++|... |+ +..|+..|.++......|.. ..+.+.+|.++.+.|++++|..+|
T Consensus 118 A~l~LrlAWlyR~~---------~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 118 AGLCLRLAWLYRDL---------GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44566777777766 44 45677778887764323322 356899999999999999999999
Q ss_pred HHHHhcCCCCc
Q 020060 243 EASALKDPSLN 253 (331)
Q Consensus 243 ~~al~~~~~~~ 253 (331)
.+++.....+.
T Consensus 189 s~vi~~~~~s~ 199 (214)
T PF09986_consen 189 SRVIGSKKASK 199 (214)
T ss_pred HHHHcCCCCCC
Confidence 99998765554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.024 Score=32.24 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+.++.++|.+|...|++++|..++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4577889999999999999999999988653
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.94 Score=42.12 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
+.+-|.-+++..+|..+++.|...+...|.+ .....+..+|..+. +.+.|++++++|-+.+|.++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~--------QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE--------QLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH--------HHHHHHHHHHHHHhhccccH
Confidence 3445666788899999999999999888876 34556777888664 69999999999999999998
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
-....+-.+.... +.-++|+.+..+...
T Consensus 429 l~q~~~~~~~~~E---------~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 429 LCQLLMLQSFLAE---------DKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHHh---------cchHHHHHHHHHHHh
Confidence 8777777777666 888999988887765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.6 Score=39.81 Aligned_cols=185 Identities=13% Similarity=0.108 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccccc------HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEY------RKDAEDHLSKAVKLNP-SLADAWLCLGSCIWKK 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 112 (331)
-.+++++..+.-.+. -.-+.+.++...+..+...|+. .+++..+|++++..-- .+...++.++..-...
T Consensus 266 yayeQ~ll~l~~~pe----iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPE----IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHHHHhcCHH----HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 444555555554432 1112233333444444444442 3678888888877533 3344445555443333
Q ss_pred CC---hhHHHHHHHHHHhcCCCh--HHHhh-HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HH
Q 020060 113 GD---LPAAKNCFNLALSKGPNK--KILCQ-LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA-CL 185 (331)
Q Consensus 113 g~---~~~A~~~~~~al~~~~~~--~~~~~-l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~ 185 (331)
-+ ++.....+++++.+...+ -+++. +-.+...-| .+.|...|.++-+.--..-.++..-|.+ |.
T Consensus 342 ~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG---------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 342 YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG---------LKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh---------HHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 33 777888888888776554 33333 333333333 8888999998876433322344333333 33
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.. ++.+-|...|+-.++ ..++.+..-......+...|+-..|...|++++..
T Consensus 413 cs---------kD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 413 CS---------KDKETAFRIFELGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hc---------CChhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 34 899999999999999 45999998888899999999999999999999987
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.022 Score=32.36 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=26.0
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
.++.++|.+|..+|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467899999999999999999999999753
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.98 Score=39.60 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
.......|...+.+....|.++.|...+.++....+.. .+.+..+.++...|+ ..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------QEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------HHHHHHHHHHHHH
Confidence 34557789999999999999999999999998876322 556667888887763 7888888888777
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.15 Score=45.62 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQH 162 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~ 162 (331)
-...|+.++...+.+...|..........+.+.+-...|.+++...|++ ..|...+.-.+..+. +++.|...
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-------ni~saRal 162 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-------NIESARAL 162 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc-------chHHHHHH
Confidence 3455666666666666666666655555555666666666666666666 555555555554432 36666666
Q ss_pred HHHHhcCCCCCchhHH
Q 020060 163 AKEAITLDVKDGNSWY 178 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~ 178 (331)
+.++++.+|+++..|.
T Consensus 163 flrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 163 FLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHhhcCCCChHHHH
Confidence 6666666666666553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.44 Score=37.39 Aligned_cols=101 Identities=11% Similarity=-0.058 Sum_probs=74.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 132 (331)
......+..+|..|...|++ +.|+++|.++....... .+.+..+-.+....+++.....+..++-......
T Consensus 33 esir~~~~~l~~~~~~~Gd~-~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDL-EEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 35567788999999999997 99999999988765432 5678888899999999999999999987654332
Q ss_pred HHHhh--HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 133 KILCQ--LSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 133 ~~~~~--l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
..... -|..+... ++|..|.+.|-.+....
T Consensus 112 ~nrlk~~~gL~~l~~--------r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQ--------RDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHh--------chHHHHHHHHHccCcCC
Confidence 22222 33333333 57999999987765443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.3 Score=43.67 Aligned_cols=120 Identities=9% Similarity=-0.079 Sum_probs=89.1
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
..|+. ..|-.-+..++...|.++..-...+.++...|+|+.|...+.-+-..-... .+...+-.....+|
T Consensus 301 ~~gd~-~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~-------- 371 (831)
T PRK15180 301 ADGDI-IAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA-------- 371 (831)
T ss_pred hccCH-HHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh--------
Confidence 45774 777888888899999999988899999999999999998887665443332 44444444555554
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
++++|.....-.+...-+++++....+.....+ |-++++..++.+.+.++
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l---------~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADAL---------QLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHH---------hHHHHHHHHHHHHhccC
Confidence 688888888877776666666665555555556 88899999999988754
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.34 Score=43.57 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc-
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN- 234 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~- 234 (331)
...-+..|+.|+...+.++..|.......... +.+.+--..|.+++.. +|+++++|..-|.-.+.-+.
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~---------~~~~~v~ki~~~~l~~--Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKK---------KTYGEVKKIFAAMLAK--HPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHh--CCCCchhHHhhhhhHHhhccc
Confidence 44567788889999999999998887777666 6688888999999994 49999999999988887776
Q ss_pred HHHHHHHHHHHHhcCCCCcHH
Q 020060 235 YERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+.|...|.++++.+|+++..
T Consensus 156 i~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 156 IESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred hHHHHHHHHHHhhcCCCChHH
Confidence 999999999999999998864
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.8 Score=40.70 Aligned_cols=200 Identities=13% Similarity=0.067 Sum_probs=124.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+......+.......+| .+|..++.++...-+. .+...-..|.+....|++++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~-~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 413 STPRLVLLQAWLLASQHRL-AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred hCchHHHHHHHHHHHccCh-HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 4455566677778888897 8898888887665333 13455667888899999999999999999888876
Q ss_pred ------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC----chhHH--HHHHHHHhhhhhcCCCChh--h
Q 020060 133 ------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD----GNSWY--NLGNACLTSFFVTGSWDHS--K 198 (331)
Q Consensus 133 ------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~--~l~~~~~~~~~~~~~~~~~--~ 198 (331)
.++..+|.+..-.| ++++|..+..++.+....+ -..|. ..+.++... | .
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G--------~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~q---------Gq~~ 554 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRG--------ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQ---------GQVA 554 (894)
T ss_pred cchhhhhhhhhhhHHHHHhc--------hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh---------hHHH
Confidence 34555777777665 6999999999888764332 22332 234445544 6 3
Q ss_pred HHHHHHHHHHHHh--chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc----CCCCcH--H--HHHHHHHHHHHHH
Q 020060 199 LLQSLKAYQNAEK--DERMKSNPDLYFNCATVNKYLENYERALSGFEASALK----DPSLNA--T--EEVQMMVNLLDKI 268 (331)
Q Consensus 199 ~~~A~~~~~~al~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~--~--~~l~~~~~~l~~~ 268 (331)
+.+....|...-. ....|.+.......+.++..--+++.+..-....+++ .|.... . ..++.+....|+.
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl 634 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL 634 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence 3444444443332 1122444334444444444433466666655555554 333322 2 3677888888888
Q ss_pred HHHHHhhhhhh
Q 020060 269 ENLLKGHAKTK 279 (331)
Q Consensus 269 ~~a~~~~~~a~ 279 (331)
++|.....+..
T Consensus 635 ~~A~~~l~~~~ 645 (894)
T COG2909 635 DKALAQLDELE 645 (894)
T ss_pred HHHHHHHHHHH
Confidence 88875544433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.36 Score=36.74 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=70.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+.....+-...++. +++...+.-.-.+.|..+..-..-|.++...|++.+|+..|+.+....|.. .+--.++.
T Consensus 8 ~iv~gLie~~~~al~~~~~-~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDP-DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444555666666677785 889999988888999999999999999999999999999999998888877 55566888
Q ss_pred HHHHhcc
Q 020060 141 LERSMAQ 147 (331)
Q Consensus 141 ~~~~~g~ 147 (331)
|+..+|+
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 8887764
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=1 Score=35.09 Aligned_cols=170 Identities=15% Similarity=0.073 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc-----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 020060 37 KLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV-----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK 111 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 111 (331)
-+++.++.|..++...-. ....+...|.+|..++. .++. ..|++.|..+.. .+.+.+...+|.+++.
T Consensus 46 gi~knF~~A~kv~K~nCd-----en~y~kSCyKyG~y~~~GKgG~~~~l-~~a~r~~~~aC~--~n~~~aC~~~gLl~~~ 117 (248)
T KOG4014|consen 46 GIQKNFQAAVKVFKKNCD-----ENSYPKSCYKYGMYMLAGKGGDDASL-SKAIRPMKIACD--ANIPQACRYLGLLHWN 117 (248)
T ss_pred HHHHHHHHHHHHHHhccc-----ccCCcHHHHHhhhhhhcccCCCccCH-HHHHHHHHHHhc--cCCHHHHhhhhhhhcc
Confidence 477888999999987652 23445566666655543 3464 889999998877 4668888999998875
Q ss_pred h-----CC--hhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHH
Q 020060 112 K-----GD--LPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGN 182 (331)
Q Consensus 112 ~-----g~--~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 182 (331)
. ++ ..+|.+++.++..+... .+.+.|+..+..- .++ +....|. .|...-.++.
T Consensus 118 g~~~r~~dpd~~Ka~~y~traCdl~~~-~aCf~LS~m~~~g----------~~k-------~~t~ap~~g~p~~~~~~~~ 179 (248)
T KOG4014|consen 118 GEKDRKADPDSEKAERYMTRACDLEDG-EACFLLSTMYMGG----------KEK-------FKTNAPGEGKPLDRAELGS 179 (248)
T ss_pred CcCCccCCCCcHHHHHHHHHhccCCCc-hHHHHHHHHHhcc----------chh-------hcccCCCCCCCcchhhhhh
Confidence 3 33 67899999998876644 4445555544421 222 1222342 2222222333
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhc
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALK 248 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 248 (331)
.. .+.++|..+--++-. -+++.+..|+...|.. -.+-++|..+-.+|.++
T Consensus 180 ---~~---------kDMdka~qfa~kACe----l~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 180 ---LS---------KDMDKALQFAIKACE----LDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred ---hh---------HhHHHHHHHHHHHHh----cCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 23 677888888888766 5567777777776653 13455666666655544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.3 Score=42.11 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+.++-|...-+-+.+ ...+.++..++..+...|++++|-++|-.+++++.-+.
T Consensus 977 ~afd~afdlari~~k----~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAK----DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred cchhhHHHHHHHhhh----ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 444444444444443 55677889999999999999999999999999876543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.35 Score=37.95 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..++..+|..|... |+.+.|++.|.++......+. -.+.++++-.+....+++.....+..++-.....
T Consensus 36 r~~~~~l~~~~~~~---------Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 36 RMALEDLADHYCKI---------GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 45788999999999 999999999999886432222 2356889999999999999999999999876554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.87 Score=45.15 Aligned_cols=137 Identities=10% Similarity=-0.002 Sum_probs=97.8
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
...++...+.|++|+..|++...-.|.- ++.+..|..+........+. ..+++|+.-|+..- -.|.-|--|...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP-RDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh-HHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 4467788889999999999999998876 88999999888665433333 35889998888653 456666677777
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-----hcHHHHHHHHHHHHhcCCCCcH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-----ENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+.+|..+ |++++-+++|.-+++ ..|.+|..-...-.+-+++ .+...|...+--++..-|....
T Consensus 559 ~~~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 559 ALVYQRL---------GEYNEEIKSLLLALK--RYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHh---------hhHHHHHHHHHHHHH--hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 8888888 999999999999999 4588776522222221111 2344566666667777776544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.1 Score=38.96 Aligned_cols=151 Identities=7% Similarity=0.019 Sum_probs=99.6
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccC----chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQG----SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
.-|++.++-+|.+ ..|..+....-.+-.. ........+.-+.++++|++.+|++...+..+-.+....
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~------- 78 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV------- 78 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------
Confidence 4578888999999 8888877665544221 122344577889999999999999988888777777766
Q ss_pred ChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH---hhcHHHHHHHHHHHHhcCC-----------CCcH------
Q 020060 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY---LENYERALSGFEASALKDP-----------SLNA------ 254 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~-----------~~~~------ 254 (331)
.+.++....+++++... |+++.+|...-..... .-.+......|.+++..-. ....
T Consensus 79 --~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l 154 (321)
T PF08424_consen 79 --WDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFML 154 (321)
T ss_pred --CCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 67777888899999854 9998887554443332 2246666666666665311 1111
Q ss_pred -H-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 255 -T-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 255 -~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
. ..+...+...|-.+.|+..++...++
T Consensus 155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 155 YVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 1 34444455666677777666555544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.13 Score=46.32 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc
Q 020060 113 GDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 191 (331)
+....|+..|.++++..|.. ..+.+.+.+++..+ ..++.-.|+.....|++++|....+|+.|+.++..+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-----W~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el---- 458 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-----WRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL---- 458 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-----ccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH----
Confidence 44566777777777777776 55666666665543 334455667777777777777777777777777777
Q ss_pred CCCChhhHHHHHHHHHHHHh
Q 020060 192 GSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~ 211 (331)
+++.+|+.+...+..
T Consensus 459 -----~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 459 -----TRYLEALSCHWALQM 473 (758)
T ss_pred -----hhHHHhhhhHHHHhh
Confidence 777777776665553
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.23 Score=34.34 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHhchhcCCC-------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSN-------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDK 267 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~ 267 (331)
|++..|++.+.+.........+ ..+..++|.++...|++++|+..++.++.+.....+...++.++..+-.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN 89 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 8999998887777752211221 3457889999999999999999999999988777666555555554443
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.52 Score=47.24 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=120.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHH------HHHHH-HhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-----
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAED------HLSKA-VKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----- 129 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 129 (331)
..+.-....|......|.+ .+|.+ .+... -.+.|..+..+..++.++...|++++|+..-.++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~-~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGF-SEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccch-hhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 4445556677777777886 77777 44422 23468888999999999999999999999988886443
Q ss_pred --CCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 130 --PNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------DVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 130 --~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+ ..+.+++...+... +...|+..+.++..+ .|.-.....+++.++... +
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~--------~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v---------~ 1071 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVK--------NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV---------E 1071 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhcc--------CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH---------H
Confidence 222 55666776665443 466777777777653 344445567888888888 9
Q ss_pred hHHHHHHHHHHHHhchh---c---CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 198 KLLQSLKAYQNAEKDER---M---KSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~---~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
+++.|+.+.+.|++... . -.....+..++..+..++++..|+...+..+.+
T Consensus 1072 e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 EADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99999999999997321 1 123455788888888999999988887777664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.5 Score=39.17 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
|+|.++.-+-.=..+. .| ++.++..+|.++....+|.+|..++..
T Consensus 476 gey~kc~~ys~WL~~i--aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKI--AP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccHHHHHHHHHHHHHh--CC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 6666666555544442 25 666666666666666667666666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.6 Score=37.21 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh------------CChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK------------GDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
..|.|+.++++.=.+.+..+|+...+|...=.++... .-.++-+.+...+++.+|+. .+|+.+..++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566667788888888888998877776554443322 24667788899999999999 9999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
.+.+. -++..-++.+.++++.+|.+-.+|...-.+.... .. ......+=+++..++|..+ +.|-.+|
T Consensus 120 ~~~p~------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~-~~----~~~~~~~El~ftt~~I~~n--fSNYsaW 186 (421)
T KOG0529|consen 120 QKNPH------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA-ER----SRNLEKEELEFTTKLINDN--FSNYSAW 186 (421)
T ss_pred HhCCC------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHH-hc----ccccchhHHHHHHHHHhcc--chhhhHH
Confidence 87764 2588889999999999999999998877766544 00 1123566678888998855 8899999
Q ss_pred hhHHHHHHH------hh------cHHHHHHHHHHHHhcCCCCcHH
Q 020060 223 FNCATVNKY------LE------NYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 223 ~~la~~~~~------~g------~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+...++.. .| -...-+..-..|+-.+|++...
T Consensus 187 hyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 187 HYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSC 231 (421)
T ss_pred HHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccce
Confidence 888887762 23 1334456677777889988765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.47 Score=36.14 Aligned_cols=101 Identities=7% Similarity=-0.144 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.+++...+...--+.|+.+..-..-|.+++.. |++.+|+..++.+.... |..+.+--.++.|++.+|+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r---------~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVR---------GDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh---------CCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 577888888877778999999999999999998 99999999999988744 8889888999999999998
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 020060 235 YERALSGFEASALKDPSLNATEEVQMMVNLLDKI 268 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~ 268 (331)
+.= ..+-..++...+ ++....+...+......
T Consensus 94 ~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 94 PSW-RRYADEVLESGA-DPDARALVRALLARADL 125 (160)
T ss_pred hHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhccc
Confidence 753 122233444444 34444444444444333
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.2 Score=32.75 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-CCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 129 GPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-LDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
+++-...+++++++..-. ...+..+.+.+++..++ ..|. ..+..+.|+..+... ++|+.++.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~-----~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRl---------keY~~s~~yv 94 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSR-----DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRL---------KEYSKSLRYV 94 (149)
T ss_pred cchHHHHHHHHHHHHccc-----chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHH---------hhHHHHHHHH
Confidence 444466777777776543 34567788888888876 3343 345667778888877 8888888888
Q ss_pred HHHHhchhcCCChhH
Q 020060 207 QNAEKDERMKSNPDL 221 (331)
Q Consensus 207 ~~al~~~~~~~~~~~ 221 (331)
+..+... |+|..+
T Consensus 95 d~ll~~e--~~n~Qa 107 (149)
T KOG3364|consen 95 DALLETE--PNNRQA 107 (149)
T ss_pred HHHHhhC--CCcHHH
Confidence 8888744 777655
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.25 Score=44.66 Aligned_cols=99 Identities=17% Similarity=0.030 Sum_probs=81.4
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh---CChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK---GDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
+..-|+-.+..+.. ..|+..|.+++...|.....+.+.+.+++.. |+.-.|+.-...+++++|.. .+++.++.++
T Consensus 377 ~~~egnd~ly~~~~-~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 377 FKTEGNDGLYESIV-SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred HHhhccchhhhHHH-HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 33344444444554 7899999999999999999999999888875 67778899999999999998 9999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
..++ ++.+|+.+...+....|.+.
T Consensus 456 ~el~--------r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 456 NELT--------RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHh--------hHHHhhhhHHHHhhcCchhh
Confidence 9875 69999999998888888543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.14 Score=28.19 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHH--HHHHHhcCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNC--FNLALSKGPN 131 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~~~ 131 (331)
+.++.+|..+...|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4677788888888888888888 4466666654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.8 Score=33.49 Aligned_cols=139 Identities=10% Similarity=-0.049 Sum_probs=88.0
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH--
Q 020060 108 CIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN-- 182 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-- 182 (331)
-....+..++|+..|...-+-.-.. -+.+..+.+....| +...|+..|.++-...| .|.....++.
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg--------dta~AV~aFdeia~dt~-~P~~~rd~ARlr 137 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG--------DTAAAVAAFDEIAADTS-IPQIGRDLARLR 137 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc--------cHHHHHHHHHHHhccCC-CcchhhHHHHHH
Confidence 3445677888888887765554443 44555677776554 58899999988766443 3444333322
Q ss_pred -HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHH
Q 020060 183 -ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQM 260 (331)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~ 260 (331)
.|... +.|.|++.....+..-. +..|-...+.-.||..-++.|++..|.++|.+... +...+.. .+.+.
T Consensus 138 aa~lLv-------D~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 138 AAYLLV-------DNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred HHHHHh-------ccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 22222 44888887666654432 11244446678899999999999999999999877 4444443 55555
Q ss_pred HHHH
Q 020060 261 MVNL 264 (331)
Q Consensus 261 ~~~~ 264 (331)
+...
T Consensus 209 ~mld 212 (221)
T COG4649 209 IMLD 212 (221)
T ss_pred HHHH
Confidence 5443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.089 Score=42.25 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
++.+.|.+.|.+++.+. |.....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 9 ~D~~aaaely~qal~la--p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 9 GDAEAAAELYNQALELA--PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CChHHHHHHHHHHhhcC--chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 89999999999999955 999999999999999999999999999999999998654
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.18 Score=34.96 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=46.1
Q ss_pred hcccccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPS---------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
...|+| .+|++.+.+....... ...++.++|.++...|++++|+..+++++++....
T Consensus 9 ~~~~dy-~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDY-SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCH-HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456888 8898888887765321 24577889999999999999999999999887655
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.92 Score=35.31 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=24.4
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH----HHHHHHHHhhhhhhhHHHHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLL----DKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l----~~~~~a~~~~~~a~~l~~~~ 285 (331)
..+.+.|.++-.+|-+++ ++.+ .++++.+..= .+-.+|.+.-..|+++...+
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 355666666666655443 3333 4444444221 22344445555555554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.5 Score=37.63 Aligned_cols=234 Identities=12% Similarity=0.002 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHhcCCC-CCCCC--Cc------------chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC---CC-
Q 020060 37 KLQNESDLALRLLGSVP-PEQRK--SP------------TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN---PS- 97 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~-~~~~~--~~------------~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~---p~- 97 (331)
..++-++++++.+++.. ..... .+ .-...+.+..+......+++ ..|...+....... |.
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~~~ 397 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW-SKATQELEFMRQLCQRSPSK 397 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHHHhcCccc
Confidence 44566677777776655 11111 00 11233455667777788997 88888888766542 22
Q ss_pred -----cHHHHHHHHHHHHHhCChhHHHHHHH--------HHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 98 -----LADAWLCLGSCIWKKGDLPAAKNCFN--------LALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 98 -----~~~~~~~lg~~~~~~g~~~~A~~~~~--------~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
.+..++..|..+...|+.+.|..+|. .+....+.. -+..++..++...+..... -.++.
T Consensus 398 ~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~----~~~~~ 473 (608)
T PF10345_consen 398 LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDS----ESELN 473 (608)
T ss_pred hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchh----hhHHH
Confidence 37788999999999999999999998 444555554 2334455555544320000 00133
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-hcCCCh----hHHhhHHHHHHHhhcH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMKSNP----DLYFNCATVNKYLENY 235 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~----~~~~~la~~~~~~g~~ 235 (331)
..+...-....+.+..++..+..+....+... .+-...++...+..+++.- ...++. -++..++..++ .|+.
T Consensus 474 ~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~ 550 (608)
T PF10345_consen 474 ELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF--EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDV 550 (608)
T ss_pred HHHHhcCccccCCccHHHHHHHHHHHHHHhhC--CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence 33332222212233333333333332111110 1122336666666666532 112222 22556666666 6888
Q ss_pred HHHHHHHHHHHhcCCCC---cHHH-------HHHHHHHHHHHHHHHHHhhhhh
Q 020060 236 ERALSGFEASALKDPSL---NATE-------EVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~---~~~~-------~l~~~~~~l~~~~~a~~~~~~a 278 (331)
.+.......++.+.+.. .... .+...+...|+.+++.....+.
T Consensus 551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 88777777777654443 3332 2333345556666655444443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.091 Score=26.49 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=21.6
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
|.+.+.+|.++...|++++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3467889999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.099 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFN 123 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~ 123 (331)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456777888888888888877665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.4 Score=34.44 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhH---HHHHHH
Q 020060 79 EYRKDAEDHLSKAVKLNPSLA----DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQL---SMLERS 144 (331)
Q Consensus 79 ~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l---~~~~~~ 144 (331)
+ .++|+..|++++++.+... .++..+-.+++.+|+|++-+..|.+.+..-... .....+ ...-.+
T Consensus 42 ~-p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 42 E-PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred C-HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 5 4899999999999988754 467778889999999999999998887542211 111111 111111
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH----HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh---cCC
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY----NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER---MKS 217 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~ 217 (331)
++. -..-|+..+..++.| .+...|+ .||.+|+.. ++|.+-...+.+.-..+. ..+
T Consensus 121 m~L----LQ~FYeTTL~ALkdA-----KNeRLWFKTNtKLgkl~fd~---------~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 121 MDL----LQEFYETTLDALKDA-----KNERLWFKTNTKLGKLYFDR---------GEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred hHH----HHHHHHHHHHHHHhh-----hcceeeeeccchHhhhheeH---------HHHHHHHHHHHHHHHHhccccCch
Confidence 110 111233344444333 3444453 578888766 777655444444332110 011
Q ss_pred C-------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHH-------HHHHHHHHHHHHHHH
Q 020060 218 N-------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEV-------QMMVNLLDKIENLLK 273 (331)
Q Consensus 218 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l-------~~~~~~l~~~~~a~~ 273 (331)
+ .++|..--.+|-.+.+-..-...|++++.+...-+.+..+ |....+-|++++|..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 1 1335555566777777777778899999876654443222 234455566655553
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.51 E-value=4.3 Score=37.57 Aligned_cols=127 Identities=14% Similarity=-0.022 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLC--LGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEE 158 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~ 158 (331)
..++..+...+.++|.++..+.. +...+...++...+.-.+..++..+|.+ .+..+++......| ..+.-
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~-------~~~~~ 120 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG-------LQFLA 120 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh-------hHHHH
Confidence 44777777777888888776433 4677777888889999999999999998 88888888877655 24555
Q ss_pred HHHHHHHHhcCCCCCchhHHHH------HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 159 SIQHAKEAITLDVKDGNSWYNL------GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 159 A~~~~~~al~~~p~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
+......+....|++......+ +.....+ |+..++....+++.... |.++.+...+.
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~l~~~~d~~--p~~~~~~~~~~ 183 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLL---------GRTAEAELALERAVDLL--PKYPRVLGALM 183 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhh--hhhhhhHhHHH
Confidence 5556666888888888777666 5555545 66677777777777644 77765543333
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=4.8 Score=35.62 Aligned_cols=133 Identities=15% Similarity=0.035 Sum_probs=91.1
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------------CC------------Cc---HHHHHHHHHHHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------------NP------------SL---ADAWLCLGSCIWK 111 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~lg~~~~~ 111 (331)
+-....+..++.++...|++ ..|.+++++|+=. ++ .+ -.+.+.......+
T Consensus 37 PyHidtLlqls~v~~~~gd~-~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDH-AQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 46678899999999999996 8888888887632 11 11 2245566677889
Q ss_pred hCChhHHHHHHHHHHhcCCC-h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC-----CCchhHHHHHHH
Q 020060 112 KGDLPAAKNCFNLALSKGPN-K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV-----KDGNSWYNLGNA 183 (331)
Q Consensus 112 ~g~~~~A~~~~~~al~~~~~-~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~ 183 (331)
.|-+.-|.++.+-.+.++|. + .+++.+-....+- ++++--+..++....... .-|..-+..+.+
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs--------~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS--------RQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc--------CCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 99999999999999999999 4 3444333333322 346666666665444211 134566677777
Q ss_pred HHhhhhhcCCCChhhH---------------HHHHHHHHHHHh
Q 020060 184 CLTSFFVTGSWDHSKL---------------LQSLKAYQNAEK 211 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~---------------~~A~~~~~~al~ 211 (331)
+... ++- +.|-..+.+|+.
T Consensus 188 ~~~l---------~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 188 YFRL---------EKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHh---------cCccccccccccccccchhHHHHHHHHHHH
Confidence 7766 444 788888888885
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.44 E-value=6.3 Score=36.54 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCh-HHHhh--HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 117 AAKNCFNLALSKGPNK-KILCQ--LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~-~~~~~--l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
-++..+...+.+++.+ ..+.. ++..+..++ ....+.-....++..+|+++.+..+|+.+....
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~------ 114 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLA--------DSTLAFLAKRIPLSVNPENCPAVQNLAAALELD------ 114 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccc--------cchhHHHHHhhhHhcCcccchHHHHHHHHHHHh------
Confidence 3566666666777777 33222 455555554 366888888999999999999999999998876
Q ss_pred CChhhHHHHHHHH-HHHHhchhcCCChhHHh------hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 194 WDHSKLLQSLKAY-QNAEKDERMKSNPDLYF------NCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 194 ~~~~~~~~A~~~~-~~al~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|....++..+ +.+... .|.+..... .++.....+|+..++.....++..+.|.++..
T Consensus 115 ---~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 115 ---GLQFLALADISEIAEWL--SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred ---hhHHHHHHHHHHHHHhc--CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 5555554444 446663 377776633 35888889999999999999999999988653
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.27 Score=27.06 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=25.9
Q ss_pred hHHhhHHHHHHHhhcHHHHHHH--HHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSG--FEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~~~~ 252 (331)
+.++.+|..+..+|++++|+.. |+-+..+++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 54777777653
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.41 E-value=5.7 Score=35.71 Aligned_cols=51 Identities=8% Similarity=-0.086 Sum_probs=41.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhh
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
|..++..|+|.++.-+-.=..++.| ++.+ .-+|.++....++.+|.+.+.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4456788999999988888888999 4555 8899999999999999866544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.21 E-value=3.7 Score=37.37 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=67.8
Q ss_pred cccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
..+++ +++...... -.+-|.-+ .-...++..+...|-++.|+. ...+....+.++. .+ |
T Consensus 273 ~~~d~-~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~-------~~~D~~~rFeLAl---~l--------g 332 (443)
T PF04053_consen 273 LRGDF-EEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQ-------FVTDPDHRFELAL---QL--------G 332 (443)
T ss_dssp HTT-H-HH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHH-------HSS-HHHHHHHHH---HC--------T
T ss_pred HcCCh-hhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHh-------hcCChHHHhHHHH---hc--------C
Confidence 45676 666665541 12223333 334555666666776655554 4444455555554 33 3
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+++.|.+..+ ..+++..|..||...+.. |+++-|..+|+++-. +..+..+|...|+
T Consensus 333 ~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~---------g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 333 NLDIALEIAK-----ELDDPEKWKQLGDEALRQ---------GNIELAEECYQKAKD----------FSGLLLLYSSTGD 388 (443)
T ss_dssp -HHHHHHHCC-----CCSTHHHHHHHHHHHHHT---------TBHHHHHHHHHHCT-----------HHHHHHHHHHCT-
T ss_pred CHHHHHHHHH-----hcCcHHHHHHHHHHHHHc---------CCHHHHHHHHHhhcC----------ccccHHHHHHhCC
Confidence 5777777653 334778999999999988 999999999998754 3345555666666
Q ss_pred HHHHHHHH
Q 020060 235 YERALSGF 242 (331)
Q Consensus 235 ~~~A~~~~ 242 (331)
.+.=.+..
T Consensus 389 ~~~L~kl~ 396 (443)
T PF04053_consen 389 REKLSKLA 396 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54433333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.53 Score=37.31 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhcc
Q 020060 82 KDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQ 147 (331)
Q Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~ 147 (331)
+.|...|-++-... -++++..+.+|..|. ..+.++|+..+.+++++.+.+ ..+..++.++..+|+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 56777776654332 245777788887665 567888888888888876443 667778888887764
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.35 Score=40.89 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 159 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
|..+|.+|+.+.|.++..|+.||.++... |+.-.|+-+|-+++-.. ...+.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~---------~~~l~avy~y~Rsl~~~--~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ---------GDDLDAVYYYIRSLAVR--IPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT---------T-HHHHHHHHHHHHSSS--B--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc---------cchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999988 99999999999999632 3347778888887777
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.19 Score=28.01 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+++..||.+....++|++|+.-|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467778888888888888888888887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.5 Score=28.99 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=42.7
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
..-|.-++..++.++|+..++++++..++.+.. ..+..++...|++.+.++.-.....+..
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888999999998888776664 4445677788888888776555444443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.89 E-value=5 Score=34.61 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=104.2
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHh----cC--CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVK----LN--PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+...|+..++| .+|+......++ ++ +...+++..=..+|+...+..+|...+..|-.....- -.-..-|.+
T Consensus 133 rli~Ly~d~~~Y-teAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKRY-TEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 456677888888 888877666554 22 2235566666777888888888888777664332211 111123333
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCC---CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVK---DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
-..-|-...+. ++|..|..+|-+|++-... +..+...|-..++..-+.. .-+--.++-.-..+++. ...+
T Consensus 212 DLqSGIlha~e-kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln----~~ddv~~lls~K~~l~y--~g~~ 284 (411)
T KOG1463|consen 212 DLQSGILHAAE-KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN----LPDDVAALLSAKLALKY--AGRD 284 (411)
T ss_pred HHhccceeecc-cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc----CHHHHHHHHhhHHHHhc--cCcc
Confidence 44444444434 6799999999999985432 2344333332222210000 02323344444455553 3667
Q ss_pred hhHHhhHHHHHH--HhhcHHHHHHHHHHHHhcCCC
Q 020060 219 PDLYFNCATVNK--YLENYERALSGFEASALKDPS 251 (331)
Q Consensus 219 ~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~ 251 (331)
.++....+.++. .+.+|+.|+.-|..-+..||-
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 777777877776 568899999999998877775
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.84 E-value=8 Score=35.90 Aligned_cols=174 Identities=11% Similarity=-0.018 Sum_probs=124.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSML 141 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~ 141 (331)
...|......-...|++ ....-.|.+++-......+.|...+.-....|+.+-|-..+.++.++.... .....-+..
T Consensus 297 l~nw~~yLdf~i~~g~~-~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDF-SRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccH-HHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 33455555566678997 899999999998888889999999999999999999999999999887554 344444444
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH---HHHHHHHhchhcCC-
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL---KAYQNAEKDERMKS- 217 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~---~~~~~al~~~~~~~- 217 (331)
.-..| ++..|...++......|+...+-..-....... |+.+.+. +.+.........+.
T Consensus 376 ~e~~~--------n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~---------~~~~~~~~~~~l~s~~~~~~~~~~i 438 (577)
T KOG1258|consen 376 EESNG--------NFDDAKVILQRIESEYPGLVEVVLRKINWERRK---------GNLEDANYKNELYSSIYEGKENNGI 438 (577)
T ss_pred HHhhc--------cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh---------cchhhhhHHHHHHHHhcccccCcch
Confidence 44444 699999999999887788777666555555556 7777776 33333332110111
Q ss_pred ChhHHhhHHHH-HHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 218 NPDLYFNCATV-NKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 218 ~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
....+...+.. +.-.++.+.|...+.++....|++...
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 12234555554 345688999999999999999998764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.79 E-value=7.1 Score=35.13 Aligned_cols=192 Identities=10% Similarity=0.103 Sum_probs=98.0
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc---------------
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--------------- 128 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------- 128 (331)
+.+|+.....+...++ .+.|+....+++...|. ....++.+|....+-++-..+|.++.+-
T Consensus 302 ~evw~dys~Y~~~isd-~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~ 377 (660)
T COG5107 302 EEVWFDYSEYLIGISD-KQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASK 377 (660)
T ss_pred HHHHHHHHHHHhhccH-HHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhcc
Confidence 3445544445555566 36676666666666555 4455666666655555555555554321
Q ss_pred ---CCCh--H-----------HHhh-HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHhhhhh
Q 020060 129 ---GPNK--K-----------ILCQ-LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA-CLTSFFV 190 (331)
Q Consensus 129 ---~~~~--~-----------~~~~-l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~ 190 (331)
+|.. . +|+. +-.+...-| .+.|...|-++-+..--...++..-+.+ +...
T Consensus 378 ~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G---------l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~--- 445 (660)
T COG5107 378 VDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG---------LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT--- 445 (660)
T ss_pred ccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh---------HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc---
Confidence 0100 0 1111 111111111 5666666666654432222233222222 2223
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIEN 270 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~ 270 (331)
|++.-|...|+-.+. ..|+++..-...-..+...++-..|...|+.++..-.+. .+..++..+-.++.
T Consensus 446 ------~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~----q~k~iy~kmi~YEs 513 (660)
T COG5107 446 ------GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT----QLKRIYDKMIEYES 513 (660)
T ss_pred ------CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh----hhhHHHHHHHHHHH
Confidence 777788888887777 337776666666666777788888888888776533222 23344444444444
Q ss_pred HHHhhhhhhhHHH
Q 020060 271 LLKGHAKTKRVAS 283 (331)
Q Consensus 271 a~~~~~~a~~l~~ 283 (331)
-......+..+..
T Consensus 514 ~~G~lN~v~sLe~ 526 (660)
T COG5107 514 MVGSLNNVYSLEE 526 (660)
T ss_pred hhcchHHHHhHHH
Confidence 4444444433333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.63 Score=39.13 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=53.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
....++..++..+...|++ +.+++.+++.+..+|.+-.+|..+-..|...|+...|+..|++.-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~-~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRA-DAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3455666677778888887 88888888888888888888888888888888888888888887653
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.26 Score=27.50 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=24.2
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
+++..+|.+-...++|++|+.-|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457778888888888888888888888753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.9 Score=38.85 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=90.8
Q ss_pred HHhCChhHHHHHHHHHHhcCCChHH-HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNKKI-LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
+..|+...|-.-...++...|.... ....+.+...+| .|+.+...+..+-..-..-..+..-+-.....+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg--------~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l- 370 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLG--------YYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL- 370 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhh--------hHHHHHHHhhchhhhhcCCchHHHHHHHhhhch-
Confidence 4568888888888888888888733 344677777776 599998888766554333334444444445556
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|++++|.....-.+... -.++++..--+.....+|-+++|..++++.+.++|.
T Consensus 371 --------~r~~~a~s~a~~~l~~e--ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 371 --------ARWREALSTAEMMLSNE--IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred --------hhHHHHHHHHHHHhccc--cCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 89999999888888744 677887777777778889999999999999998875
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.6 Score=32.74 Aligned_cols=78 Identities=15% Similarity=0.036 Sum_probs=62.0
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhcc
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQ 147 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~ 147 (331)
.....-...++. +++...+.-.--+.|+.+..-..-|.++...|++.+|+..|+....-.+.. ...-.++.|+..+|+
T Consensus 15 ~~~~~aL~~~d~-~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 15 EVLMYALRSADP-YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 333333446775 888888888888999999999999999999999999999999998877665 445557777777764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.3 Score=29.14 Aligned_cols=62 Identities=19% Similarity=0.077 Sum_probs=46.4
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHH---HHHHHhCChhHHHHHHHHHHhc
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLG---SCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~ 128 (331)
-....|.-++...+. ++|+..++++++..++.++-+..+| .+|...|+|.+++.+-.+=+.+
T Consensus 8 ~~ie~GlkLY~~~~~-~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNET-QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677784 9999999999998888776666555 5678889999988887665544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.51 E-value=4.6 Score=35.69 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD--LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEE 158 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~ 158 (331)
++-+.+...++..+|+...+|+.+..++.+.+. +..-+...+++++.+|.+ .+|...-.+...... ......+
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~----~~~~~~~ 167 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER----SRNLEKE 167 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc----ccccchh
Confidence 566788889999999999999999999987654 678899999999999998 666554433332211 1112556
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC---CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS---WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 159 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
-+++..+++..++.+..+|.+...++..+.-.... +.......-++.-..++- .+|.|..+|+..-+.+.
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiF--Tdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIF--TDPEDQSCWFYHRWLLG 240 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHh--cCccccceeeehHHhhc
Confidence 78889999999999999999998887754211110 011233444555566666 44999999877444443
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.59 Score=39.53 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
|..+|.+|+... |.+...|+.+|.++...|+.-.|+-+|-+++....-.+.+ .++..++..
T Consensus 1 A~~~Y~~A~~l~--P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--CCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999955 9999999999999999999999999999999765555555 888877777
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.32 E-value=13 Score=37.19 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
..+.|.++.++. +.+.+|..+|.+.+.. |...+|++.|-+ .++|..|...-.+....|.
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~---------~~v~dAieSyik-------adDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQG---------GLVKDAIESYIK-------ADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhc---------CchHHHHHHHHh-------cCCcHHHHHHHHHHHhcCc
Confidence 355555555443 4678899999988877 899999988854 5677888888888889999
Q ss_pred HHHHHHHHHHHHhcCC
Q 020060 235 YERALSGFEASALKDP 250 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~ 250 (331)
|++-++++..+.+...
T Consensus 1149 ~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999888888876543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.1 Score=32.15 Aligned_cols=71 Identities=7% Similarity=-0.171 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.+++...+...--+.|+.+..-..-|.++... |++.+|+..++...... +..+-.--.++.|++.+||
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r---------g~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR---------GNYDEAARILRELLSSA--GAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHc---------CCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcCC
Confidence 477777777776677899999988899999988 99999999999888743 6667777788888888888
Q ss_pred HH
Q 020060 235 YE 236 (331)
Q Consensus 235 ~~ 236 (331)
.+
T Consensus 94 p~ 95 (153)
T TIGR02561 94 AE 95 (153)
T ss_pred hH
Confidence 65
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.32 Score=41.00 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=59.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh-HHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ-LSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~-l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
.|.++....|+++..|...+..-...|.+.+--..|.++++..|.+ +.|.. -+.-+... ++++.+...+.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~--------ani~s~Ra~f~ 166 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEI--------ANIESSRAMFL 166 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhh--------ccHHHHHHHHH
Confidence 3445555567778888777777777778888888888888888888 55544 22223322 35888888888
Q ss_pred HHhcCCCCCchhHHH
Q 020060 165 EAITLDVKDGNSWYN 179 (331)
Q Consensus 165 ~al~~~p~~~~~~~~ 179 (331)
++++.+|++|..|..
T Consensus 167 ~glR~N~~~p~iw~e 181 (435)
T COG5191 167 KGLRMNSRSPRIWIE 181 (435)
T ss_pred hhhccCCCCchHHHH
Confidence 888888888887754
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.3 Score=42.91 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=104.6
Q ss_pred HHHHHHHHHhCChhHHHH------HHHHHH-hcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-----
Q 020060 103 LCLGSCIWKKGDLPAAKN------CFNLAL-SKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----- 169 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~------~~~~al-~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----- 169 (331)
...|......|.+.+|.+ .+.+.. .+.|.. ..+..++.++..+| +.++|+....++.-+
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~--------d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG--------DNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc--------chHHHHHhcccceeeechhc
Confidence 445555566677777766 444332 234444 67788888888876 488898888877643
Q ss_pred ---CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch------hcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 170 ---DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE------RMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 170 ---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
.|+....+.+++...+.. +....|+..+.++..+. ..|.-.....+++.++...++++.|+.
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~---------~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAV---------KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhc---------cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 234455677777766666 67778888888887621 124444557899999999999999999
Q ss_pred HHHHHHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 241 GFEASALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 241 ~~~~al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+.+.|+.....-.. . ..-+.++..+.+..++.+.+..+..
T Consensus 1079 ~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1079 YLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 99999986543222 1 3334444444444444444444443
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.9 Score=36.54 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=67.9
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh-HHHHHHHhhcHHHHHHH
Q 020060 163 AKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN-CATVNKYLENYERALSG 241 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~ 241 (331)
+.++....|+++..|...+.-.... +-+.+--..|..+++.. |.|.+.|.. -+.-+...++++.+...
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~---------k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~ 164 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKK---------KMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAM 164 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHH
Confidence 3444556788999998887766666 88888889999999955 999999977 56667788999999999
Q ss_pred HHHHHhcCCCCcHH
Q 020060 242 FEASALKDPSLNAT 255 (331)
Q Consensus 242 ~~~al~~~~~~~~~ 255 (331)
|.++++++|+++..
T Consensus 165 f~~glR~N~~~p~i 178 (435)
T COG5191 165 FLKGLRMNSRSPRI 178 (435)
T ss_pred HHhhhccCCCCchH
Confidence 99999999998863
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.2 Score=37.82 Aligned_cols=58 Identities=12% Similarity=0.026 Sum_probs=51.7
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
.-.+..||..+++.+.|+.+-.+++.++|..... ...+.++..+.++.+|.+.+.-|.
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999888 999999999999999987665554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.79 E-value=2.4 Score=35.64 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
.+...+..|...|.+ .+|+++.++++.++|-+...+..+-.++...||--.+...|++-
T Consensus 281 llgkva~~yle~g~~-neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKP-NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344456777788997 89999999999999999999999999999999988888877765
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=3.6 Score=38.49 Aligned_cols=84 Identities=19% Similarity=0.119 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 154 EIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
++|..+++.|...+..-|.+ .....+++.||+.+ .+.+.|.++++.|-+-+ |.++-....+-.
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L---------~QLD~A~E~~~EAE~~d--~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL---------EQLDNAVEVYQEAEEVD--RQSPLCQLLMLQ 436 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHhhc--cccHHHHHHHHH
Confidence 56899999999888866654 34667888999988 89999999999998844 888888777878
Q ss_pred HHHHhhcHHHHHHHHHHHHhc
Q 020060 228 VNKYLENYERALSGFEASALK 248 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~ 248 (331)
+...-|.-++|+.........
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888888888888887776654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.73 E-value=6.2 Score=42.65 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=102.0
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CC-------
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-PN------- 131 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------- 131 (331)
....+.+|...|++....|++ +.|..++-+|.+.. -+.++...|...+..|+-..|+..+++.+..+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~-q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHL-QRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccH-HHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 456788999999999999997 99999999998876 57889999999999999999999999999654 33
Q ss_pred ---hH-------HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc---CCCChhh
Q 020060 132 ---KK-------ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT---GSWDHSK 198 (331)
Q Consensus 132 ---~~-------~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~---~~~~~~~ 198 (331)
.. +...++.-....|+ -...+-++.|..+.+..|.....++.+|.-|....... +.-..|+
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n------~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~ 1816 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGN------FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGR 1816 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcc------hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccccccc
Confidence 11 11122222222221 12556788999999999988888888886555432211 1112355
Q ss_pred HHH---HHHHHHHHHh
Q 020060 199 LLQ---SLKAYQNAEK 211 (331)
Q Consensus 199 ~~~---A~~~~~~al~ 211 (331)
+.. ++..|.+++.
T Consensus 1817 ~~~~l~~~~~~~~sl~ 1832 (2382)
T KOG0890|consen 1817 VLSLLKAIYFFGRALY 1832 (2382)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 555 6777778875
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.1 Score=37.24 Aligned_cols=70 Identities=13% Similarity=-0.036 Sum_probs=61.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.-.+...++-..+...+++ +.|..+..+.+.++|.++.-+...|.+|.+.|.+..|+..+...++.-|+.
T Consensus 179 il~rll~~lk~~~~~e~~~-~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 179 ILSRLLRNLKAALLRELQW-ELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHhhch-HHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3345555666677788887 999999999999999999999999999999999999999999999999988
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.52 E-value=10 Score=34.18 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
-.+.+++...|-.++.|+.-...+...++-+.|+...++++...|. ..+.++.++-... ..+...+-|+...+.+.+
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~n-d~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVN-DEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcc-cHHHHhhhHHHHHHHHHH
Confidence 4567777778888999999888889999999999999999988887 3333444443221 111122334444444333
Q ss_pred HhcC-----------CCCC-chhH------HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 166 AITL-----------DVKD-GNSW------YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 166 al~~-----------~p~~-~~~~------~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
-... +|.. ++.. +.++.|.......-. .-.+.|...|-++-+.. -..+++|..-|.
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~----~Gl~aaR~~F~k~rk~~--~~~h~vyi~~A~ 439 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK----RGLEAARKLFIKLRKEG--IVGHHVYIYCAF 439 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH----hhHHHHHHHHHHHhccC--CCCcceeeeHHH
Confidence 2211 1110 1111 112222221111000 45677888888877633 345566655555
Q ss_pred H-HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 228 V-NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 228 ~-~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
+ |...|++.-|...|+-.+...|+.+.. ...-..+..+++-..|...|.
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 5 567899999999999999999998876 666666666666666655444
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=90.71 E-value=3 Score=37.01 Aligned_cols=89 Identities=15% Similarity=0.040 Sum_probs=64.4
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCC--------C-----c-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNP--------S-----L-----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP 130 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p--------~-----~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 130 (331)
.-|..++..+.| ..|.--|..++++.. . + ....-.+..||...++.+-|+....+.+-++|
T Consensus 181 ~das~~yrqk~y-a~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 181 KDASSCYRQKKY-AVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 335566677777 777777777777632 1 1 12345688999999999999999999999999
Q ss_pred Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 131 NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 131 ~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
.. ..+...+.+.+.+. +|.+|...+.-+
T Consensus 260 ~~frnHLrqAavfR~Le--------Ry~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLE--------RYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 98 66777777777663 566666555444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.46 E-value=7.7 Score=30.91 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=47.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhCChhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS----LADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+...+.+|..|.. .+ .++++.++.+++++.+. +++.+..|+.+|...|+++.|-
T Consensus 139 ~t~elq~aLAtyY~k-rD-~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK-RD-PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc-cC-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 667888889987775 45 38899999999998654 4899999999999999999884
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.9 Score=34.88 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHH
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEE 257 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 257 (331)
.++-..+... ++++.|..+.++.+..+ |.++.-+.-.|.+|.++|.+.-|+..++..+..-|+.+.+..
T Consensus 185 ~~lk~~~~~e---------~~~~~al~~~~r~l~l~--P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 185 RNLKAALLRE---------LQWELALRVAERLLDLN--PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHh---------hchHHHHHHHHHHHhhC--CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3455556666 89999999999999966 999999999999999999999999999999999999887633
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=89.66 E-value=20 Score=34.53 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=44.2
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHH------Hhc----CCCCcHH--HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEAS------ALK----DPSLNAT--EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~~~~~~~--~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
|-.-|.++.+..++++|+++|++. +++ .|..... ...|.-+...|+++.|+..|-+|..+...
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 566677888888899999988764 332 3443332 56677788889999998877777655443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=89.17 E-value=11 Score=31.02 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-hCChhHHHHHHHHHHhcCCCh--HHHhhHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWK-KGDLPAAKNCFNLALSKGPNK--KILCQLSMLE 142 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~ 142 (331)
+..++.+....++| ++.+.++++++..+|.. .+=...++.+|-. .|....+...+.......... .....+..-+
T Consensus 4 li~~Aklaeq~eRy-~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~y 82 (236)
T PF00244_consen 4 LIYLAKLAEQAERY-DDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDY 82 (236)
T ss_dssp HHHHHHHHHHTTHH-HHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH-HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHH
Confidence 44678888899998 99999999999997764 3334445555432 344455555554444332221 1111111111
Q ss_pred HH-hccCchhHHHHHHHHHHHHHHHhcCCCCCch----hHHHHHHHHHhhhhhcCCCC-hhhHHHHHHHHHHHHhc---h
Q 020060 143 RS-MAQGSENQAEIVEESIQHAKEAITLDVKDGN----SWYNLGNACLTSFFVTGSWD-HSKLLQSLKAYQNAEKD---E 213 (331)
Q Consensus 143 ~~-~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~---~ 213 (331)
.. +.. .-..--.+.+......+--...++. .+-..|..|...+-...... ..-.+.|...|++|+.. .
T Consensus 83 k~kie~---EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~ 159 (236)
T PF00244_consen 83 KKKIED---ELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKE 159 (236)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcc
Confidence 11 100 0000122233333322211111221 22335665554422222000 01337788888888862 1
Q ss_pred hcCCChhH---HhhHHHHHH-HhhcHHHHHHHHHHHHh
Q 020060 214 RMKSNPDL---YFNCATVNK-YLENYERALSGFEASAL 247 (331)
Q Consensus 214 ~~~~~~~~---~~~la~~~~-~~g~~~~A~~~~~~al~ 247 (331)
..|.+|.. ..|.+..|+ .+|+.++|....++++.
T Consensus 160 L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 160 LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34666633 566777664 48999999888777764
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.02 E-value=14 Score=35.51 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHH---HhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------DAWLCLGSCIW---KKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+.+..++-..|....+| +.-+++.+. ++.-|+.- ...+..+.++- +-|+-++|+...-.+++.....
T Consensus 199 L~~d~V~nlmlSyRDvQdY-~amirLVe~-Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDY-DAMIRLVED-LKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred cCHHHHHHHHhhhccccch-HHHHHHHHH-HHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 3455556666778889998 755554444 44445321 12222232332 3488899999999888876544
Q ss_pred --HHHhhHHHHHHHhccC-chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 133 --KILCQLSMLERSMAQG-SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
+.++..|.+|..+-.. .....+..+.|++.|+++++..|..... .+++.++... | ..++...+.-.-.
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aa----G----~~Fens~Elq~Ig 347 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAA----G----EHFENSLELQQIG 347 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHh----h----hhccchHHHHHHH
Confidence 6677788888765221 1223445889999999999999975433 3445544443 1 3444444443333
Q ss_pred Hhchhc---CCC---hhHHhhHHHHH---HHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 210 EKDERM---KSN---PDLYFNCATVN---KYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 210 l~~~~~---~~~---~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
++++.. .+. ..-|+..|..+ .-.++|.+|+..-++..++.|-.-.
T Consensus 348 mkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 348 MKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred HHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 332110 111 11233333332 2357899999988888888765433
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.69 E-value=16 Score=32.53 Aligned_cols=199 Identities=19% Similarity=0.134 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC----
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD---- 170 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~---- 170 (331)
-.++..+|.-|...|+++.|+++|.++-..-.+. ..+.++-.+-..+| +|..-..+..+|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~--------nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMG--------NWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhc--------chhhhhhHHHHHHhCchhhh
Confidence 3578889999999999999999999965443332 33444444444443 3555555555544321
Q ss_pred ---C-CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh------cCCChhHHhhHHHH-HHHhhcHH---
Q 020060 171 ---V-KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER------MKSNPDLYFNCATV-NKYLENYE--- 236 (331)
Q Consensus 171 ---p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~la~~-~~~~g~~~--- 236 (331)
+ -.+.+...-|.+.+.+ ++|..|..+|-.+..... .|.+..+|..+-.+ -+...++.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~l---------kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~v 292 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLL---------KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNV 292 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHH---------HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHH
Confidence 0 0123445556666666 899999999988775221 13333333332211 11122222
Q ss_pred HHHHHHHHHHhcCCCCcH-----H-HHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhcccccc---CCCccccccchhh
Q 020060 237 RALSGFEASALKDPSLNA-----T-EEVQMMVNLLDKIENLL-KGHAKTKRVASLASSLAVVKL---SSSHKRATVDLLS 306 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~~~-----~-~~l~~~~~~l~~~~~a~-~~~~~a~~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 306 (331)
..-..|+..+++.|.-.. . ...+.++..+.+...-+ -..--+..+..++..++...+ .+.|-.+.++.+.
T Consensus 293 i~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA 372 (466)
T KOG0686|consen 293 IKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMA 372 (466)
T ss_pred HcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHH
Confidence 223456777777776432 1 44444444444433322 112223344455555555433 4555555555555
Q ss_pred ccCCcCce
Q 020060 307 EGLNKAVA 314 (331)
Q Consensus 307 ~~~~~~~~ 314 (331)
..++.+..
T Consensus 373 ~af~~sv~ 380 (466)
T KOG0686|consen 373 EAFNTSVA 380 (466)
T ss_pred HHhcccHH
Confidence 55555543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.12 E-value=1.5 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=23.3
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 223 FNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
+.+|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999994
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.79 E-value=22 Score=32.69 Aligned_cols=61 Identities=11% Similarity=-0.134 Sum_probs=39.9
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
..++.++.+|...++ ++-...+++..+.+-++...-..|+..|.. ++.+.+..+|.+++..
T Consensus 100 mal~el~q~y~en~n--~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 100 MALLELLQCYKENGN--EQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHHhcCc--hhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 445566666666643 556666676667666666666667766655 6777777777777644
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.62 E-value=19 Score=35.04 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
...+...|.-++..|++++|...|-+++..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345555666666777777777777666644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.48 E-value=28 Score=33.43 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
-.++.++|..+..+..+++|.++|...-. .-+...++..+. .|++-..+ ...-|++...+-
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------~e~~~ecly~le--------~f~~LE~l----a~~Lpe~s~llp 856 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD-------TENQIECLYRLE--------LFGELEVL----ARTLPEDSELLP 856 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHhHHHHHHHHH--------hhhhHHHH----HHhcCcccchHH
Confidence 46888888888888888888888876522 223334444332 24332222 233467777777
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+|..+... |--++|++.|-+.
T Consensus 857 ~~a~mf~sv---------GMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 857 VMADMFTSV---------GMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHhh---------chHHHHHHHHHhc
Confidence 788877777 7777777777653
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.91 E-value=19 Score=31.07 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.-+.+-..-++..+..+-++.-..+++++|+. .++..++.-.. .-..+|.+.++++++.
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa----------~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA----------TTIVDAERLFKQALKA 245 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh----------hhHHHHHHHHHHHHHH
Confidence 34555556667777777888888888888887 66666554322 2256667777766653
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.02 E-value=7.9 Score=32.21 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
....+|.-|+..|++++|+.+|+.+...
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445566666666666666666666433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=85.79 E-value=7.7 Score=25.46 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.++|+....+++..+ ..|+|++|+.+|.++++.
T Consensus 3 l~kai~Lv~~A~~eD-----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED-----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh-----------------HhhhHHHHHHHHHHHHHH
Confidence 356666666666533 458888888888888874
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=85.24 E-value=27 Score=31.19 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH--HHHHHH--HHHHHHhCChhHHHHHHHHHHhcC
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA--DAWLCL--GSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
....+..++..++| ..|...+......-|... ..+..+ |.-++..-++.+|.+++++.+...
T Consensus 134 ~~~~a~~l~n~~~y-~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 134 EWRRAKELFNRYDY-GAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 44566777889999 999999999988533333 344444 555577889999999999987653
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.19 E-value=2.2 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+.+|..|...|+.+.|...++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=85.08 E-value=11 Score=33.79 Aligned_cols=130 Identities=12% Similarity=-0.023 Sum_probs=72.9
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChH-HHhhH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLN---------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKK-ILCQL 138 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~l 138 (331)
.+.+++..+||| ..|++.++.. +++ +-....++..|-+|+-+++|.+|++.|...+-.-.... .+...
T Consensus 127 gLlRvh~LLGDY-~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 127 GLLRVHCLLGDY-YQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHhccCH-HHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 344677789999 8899887652 222 23456789999999999999999999999874322111 11111
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+.-+-. ..+..++....+--++.+.|.. ..+...+-.-|...+... ..|+.+.-.+.|..+-
T Consensus 205 ~~q~d~-------i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~km---q~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 205 SYQYDQ-------INKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKM---QRGDEEAFEELFSFAC 268 (404)
T ss_pred cchhhH-------HHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHhhC
Confidence 111111 1234566666666666666742 222223322222221111 2255555556666554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.04 E-value=16 Score=28.45 Aligned_cols=138 Identities=13% Similarity=0.043 Sum_probs=88.7
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHH
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLER 143 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~ 143 (331)
+.-+...+.. ++|+..|...-+..-.. .-+....|.+..+.|+-..|+..|..+-.-.|.. .+...-+.++.
T Consensus 65 AL~lA~~~k~-d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 65 ALKLAQENKT-DDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHcCCc-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3344455663 78888888776654332 3466778899999999999999999987766544 23344455555
Q ss_pred HhccCchhHHHHHHHHHHHHHHHh-cCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAI-TLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
..| -|++-....+..- .-+|-...+.-.||..-... |++.+|...|...... ...|..-
T Consensus 144 D~g--------sy~dV~srvepLa~d~n~mR~sArEALglAa~ka---------gd~a~A~~~F~qia~D---a~aprni 203 (221)
T COG4649 144 DNG--------SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA---------GDFAKAKSWFVQIAND---AQAPRNI 203 (221)
T ss_pred ccc--------cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc---------cchHHHHHHHHHHHcc---ccCcHHH
Confidence 444 3666555444321 22333344556678877777 9999999999998863 3334444
Q ss_pred hhHHHHH
Q 020060 223 FNCATVN 229 (331)
Q Consensus 223 ~~la~~~ 229 (331)
.+.+.+.
T Consensus 204 rqRAq~m 210 (221)
T COG4649 204 RQRAQIM 210 (221)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.66 E-value=6.2 Score=37.79 Aligned_cols=109 Identities=10% Similarity=0.043 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
.++.-.++-..|....+|+.-++.-+.. +.-|+. ...+..+-++.+.. ..|+-++|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRN-----r~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRN-----RPGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccC-----CCccHHHHHHHHHHHHHhc
Confidence 4677788889999999998888777654 334432 22233333333222 3356888999888888754
Q ss_pred -CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 171 -VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 171 -p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
|-.++.+..-|.+|..+|+..+..+.+..+.|+++|+++.+.
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 556788899999999999999988999999999999999973
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.39 E-value=26 Score=32.37 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=54.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCC-cHHHHHHHHHHHHHhCC-hhHHHHHHHHHHhcCC
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPS-LADAWLCLGSCIWKKGD-LPAAKNCFNLALSKGP 130 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~ 130 (331)
+..+..-.++.+|.++..+|+ ...|..+|..+++. ++. .|.+++.+|..|+..|. ..++..++.+|-....
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 344555566778888888888 48888888887742 111 36788889999888888 8888888888877775
Q ss_pred Ch
Q 020060 131 NK 132 (331)
Q Consensus 131 ~~ 132 (331)
+.
T Consensus 523 dY 524 (546)
T KOG3783|consen 523 DY 524 (546)
T ss_pred cc
Confidence 55
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.63 E-value=39 Score=31.65 Aligned_cols=124 Identities=11% Similarity=-0.033 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC-CCCch
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD-VKDGN 175 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 175 (331)
....|......-...|+++.....|++++---... ..|...+.-....| +.+-|...+..+.+.. |..+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~--------~~~~~~~~~~~~~~i~~k~~~~ 367 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG--------DVSLANNVLARACKIHVKKTPI 367 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC--------chhHHHHHHHhhhhhcCCCCcH
Confidence 34567777777888999999999999997543333 88888888777665 4777777777777754 56666
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
+...-+.+-... |++..|...+++....- |+...+-.........+|+.+.+..
T Consensus 368 i~L~~a~f~e~~---------~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 368 IHLLEARFEESN---------GNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHhh---------ccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence 666666666666 99999999999999854 8888887788888888899988884
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.46 E-value=41 Score=32.07 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=34.9
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 227 TVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..+...+++.+|...-++--+.-|+-. ...++-+....++++|.+.|.+|-+-++.
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy--~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVY--MPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred hheeecccchHhHhhhhhCcccccccc--chHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 344456667777666554333333211 55667777888888888888888766543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.77 E-value=6.8 Score=33.11 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
+..++..+... |+++.++..+++.+... |.+...|..+-..|...|+...|+..|++.-+.
T Consensus 156 l~~lae~~~~~---------~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIAC---------GRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhc---------ccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34455555555 78888888888888844 888888888888888888888888888887764
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=80.72 E-value=5.3 Score=35.68 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.|..++..+ |+|..|++.++..-- ....+-+...++.+|-+|..+++|.+|++.|...+..
T Consensus 127 gLlRvh~LL---------GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 127 GLLRVHCLL---------GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhc---------cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556 999999988775431 0112345566999999999999999999999998853
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=80.49 E-value=43 Score=29.98 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H--HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K--ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
-....+.-.+..++|..|...+......-|.. . .+..++..|... ..-++++|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W------D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW------DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH------HccCHHHHHHHHHHHHHH
Confidence 34556777889999999999999999863333 3 444455544433 123588999999987764
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.46 E-value=4.4 Score=20.81 Aligned_cols=26 Identities=19% Similarity=0.366 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGS 107 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~ 107 (331)
+.|...|++++...|..+..|...+.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 66777777777777777777666544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.42 E-value=9.9 Score=30.79 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=52.4
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+...+.. ++|+...+.-++-.|.+......+-.++.-.|+|++|...++-+-++.|+.
T Consensus 11 LL~~~sL-~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSL-QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccH-HHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3445664 899999999999999999999999999999999999999999999999987
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.42 E-value=47 Score=30.43 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHhCChhHHHHHHH--HHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 110 WKKGDLPAAKNCFN--LALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 110 ~~~g~~~~A~~~~~--~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
...++++++.+... +.+..-|. .....++..+...| ..+.|+.+. +++...+.|+. .+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~-~~~~~i~~fL~~~G--------~~e~AL~~~--------~D~~~rFeLAl---~l 331 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPK-DQGQSIARFLEKKG--------YPELALQFV--------TDPDHRFELAL---QL 331 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--H-HHHHHHHHHHHHTT---------HHHHHHHS--------S-HHHHHHHHH---HC
T ss_pred HHcCChhhhhhhhhhhhhcccCCh-hHHHHHHHHHHHCC--------CHHHHHhhc--------CChHHHhHHHH---hc
Confidence 45678888777765 22222232 33445666666555 466676653 34556666655 34
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
|+++.|.+... ..+++..|..+|.....+|+++-|..+|+++-.
T Consensus 332 ---------g~L~~A~~~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 332 ---------GNLDIALEIAK-------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp ---------T-HHHHHHHCC-------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred ---------CCHHHHHHHHH-------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 88888876542 356788999999999999999999999998643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 331 | ||||
| 4abn_A | 474 | Crystal Structure Of Full Length Mouse Strap (Ttc5) | 2e-41 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 8e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-06 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 1e-04 |
| >pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5) Length = 474 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 215 bits (548), Expect = 2e-66
Identities = 124/349 (35%), Positives = 185/349 (53%), Gaps = 28/349 (8%)
Query: 6 EDIWARATKAADDLYHVKETFFPANPDDKVSK----LQNESDLALRLLGSVPPEQRKSPT 61
+ + + D LY ++++F + + + +Q E + L+ + V S
Sbjct: 44 KHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEV----LGSAQ 99
Query: 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121
A LKGK L+V P+Y +AE LSKAVKL P L +AW LG WKKGD+ +A C
Sbjct: 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159
Query: 122 FNLALSKGPNKKILCQLSMLERSMAQGSENQ-AEIVEESIQHAKEAITLDVKDGNSWYNL 180
F+ AL+ NK L LSM+ R + S ++ + V +S++ AK A+ +DV DG SWY L
Sbjct: 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219
Query: 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERAL 239
GNA L+ +F TG + Q+L AY AEK D + SNPDL+ N AT++KY E+Y AL
Sbjct: 220 GNAYLSLYFNTGQ-NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278
Query: 240 SGFEASALKDPSL-NATEEVQMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL--- 293
GF +A DP+ + Q ++ L ++ +LL KG K K++ S+ SL L
Sbjct: 279 EGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPC 338
Query: 294 ------SSSHKRATVDL-----LSEGLNKAVAVVGKVLFFVKHENVTPL 331
S+S ++ T++L L G+N V+GKV+F + E P
Sbjct: 339 GDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPF 387
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 7e-14
Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 12/175 (6%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
K+A++ KA LNP ++ L ++K+G ++ FN K P L +
Sbjct: 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT------LPEV 380
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
A+ ++ + + +I+ A L+ +G + +
Sbjct: 381 PTFFAEILTDRGDF-DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439
Query: 202 SLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251
+ + A K E + A + +E + A+ FE SA+ +
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 29/196 (14%)
Query: 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119
+ + +L + + L + A A G + K +L A+
Sbjct: 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263
Query: 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179
+++ P L++ +E + ++A+ L+ + ++Y+
Sbjct: 264 VLLQESINLHPTPNSYIFLALTLADKEN--------SQEFFKFFQKAVDLNPEYPPTYYH 315
Query: 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLEN 234
G L+ Y+NA++D N Y A +
Sbjct: 316 RGQM----------------YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK 359
Query: 235 YERALSGFEASALKDP 250
+ + + F + LK P
Sbjct: 360 FTESEAFFNETKLKFP 375
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 21/180 (11%), Positives = 59/180 (32%), Gaps = 22/180 (12%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKK-------- 133
++E ++ P+L + + +GD A +++A ++
Sbjct: 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420
Query: 134 ILCQLSMLERSMAQGSENQA-EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTG 192
++ + ++L R +Q E +I+ +A LD + + L L
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL------- 473
Query: 193 SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252
K+ ++++ ++++ R + + ++ L + K
Sbjct: 474 --QMEKIDEAIELFEDSAILAR--TMDEKLQATTF--AEAAKIQKRLRADPIISAKMELT 527
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 24/203 (11%), Positives = 52/203 (25%), Gaps = 30/203 (14%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ + +KA+++ P + A L S G+ A ++ G + +
Sbjct: 76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135
Query: 142 ERSMAQGSENQAEI-----------------VEESIQHAKEAITLDVKDGNSWY-----N 179
Q + E + + + + +S Y
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195
Query: 180 LGNACLTSFFVTGSWDH---SKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKY 231
L +A + T L +S Y + ++ +
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 232 LENYERALSGFEASALKDPSLNA 254
N A + S P+ N+
Sbjct: 256 KNNLLDAQVLLQESINLHPTPNS 278
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 28/175 (16%)
Query: 82 KDAEDHLSKAVKLNPS----LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQ 137
+ E +++ L+PS A G+ + + A + A+ PN+ +
Sbjct: 4 MNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197
S S +E+ I+ +A+ + + +A
Sbjct: 64 N----ISACYISTGD---LEKVIEFTTKALEIKPDHSKALLRRASA-------------- 102
Query: 198 KLLQSLKAYQNAEKD-ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251
+SL + +A D + N D ++A+ + KD
Sbjct: 103 --NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 30/196 (15%)
Query: 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119
+Y+ + ++ D ++ KL LA + G + K D A
Sbjct: 199 KRSPESYDKADESFTKAARLF-EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257
Query: 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179
A+ P ++++ E + +A+ LD + + +Y+
Sbjct: 258 EDIKKAIELFPRVNSYIYMALIMADRND--------STEYYNYFDKALKLDSNNSSVYYH 309
Query: 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLEN 234
G L+ Y A KD E N Y A +
Sbjct: 310 RGQM----------------NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK 353
Query: 235 YERALSGFEASALKDP 250
++ + F + K P
Sbjct: 354 FDDCETLFSEAKRKFP 369
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 11/171 (6%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
A KA +L+P ++ L +++ + F+ A K P +
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------PEV 374
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
A+ ++ + +++++ AI L+ K + + + +T + ++
Sbjct: 375 PNFFAEILTDKNDF-DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
Query: 202 SLKAYQNA-EKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251
+ + A + D R + A + E+ + A++ FE SA +
Sbjct: 434 ATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 37/183 (20%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ ++ KA+KL+ + + + G + + A F+ A P +
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF----PYI 342
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ + EN+ ++ EA + L
Sbjct: 343 QLACLAYRENK---FDDCETLFSEAKRKFPEAPEVPNFFAEI----------------LT 383
Query: 202 SLKAYQNAEKD-----ERMKSNPDLYFN---------CATVNKYLENYERALSGFEASAL 247
+ A K E +Y T N +EN+ A + E ++
Sbjct: 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443
Query: 248 KDP 250
DP
Sbjct: 444 LDP 446
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 9e-10
Identities = 17/161 (10%), Positives = 48/161 (29%), Gaps = 17/161 (10%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILC--QLS 139
D E S+A + P + + K D A ++LA+ +
Sbjct: 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414
Query: 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199
++ ++ E E+ ++A LD + + L L +
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL---------QQEDI 465
Query: 200 LQSLKAYQNA-EKDERMKSNPDLYFNCATVNKYLENYERAL 239
+++ ++ + + ++ + ++ +
Sbjct: 466 DEAITLFEESADLA---RTMEEKLQAIT--FAEAAKVQQRI 501
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 14/181 (7%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFN-LALSKGPNKKILCQLSM 140
K + +KA++L P + L S G A + L+L+ N + M
Sbjct: 56 KKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI--EPM 113
Query: 141 LERSMAQGSENQA-EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199
LER++ + + ++ E + L + + + + + K
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173
Query: 200 LQSLKAYQNAEK---------DERMKSNPDLYFNCATV-NKYLENYERALSGFEASALKD 249
+ Y + + K +P+ Y K +E L
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233
Query: 250 P 250
Sbjct: 234 E 234
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 19/167 (11%), Positives = 44/167 (26%), Gaps = 32/167 (19%)
Query: 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAE 154
A A G+ ++ A +N AL + LS S+
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGD------- 54
Query: 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-E 213
+++ ++ + +A+ L +A + L + +A D
Sbjct: 55 -LKKVVEMSTKALELKPDYSKVLLRRASA----------------NEGLGKFADAMFDLS 97
Query: 214 RMKSNPD-------LYFNCATVNKYLENYERALSGFEASALKDPSLN 253
+ N D + + + + + L+
Sbjct: 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 31/183 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-------NKKI 134
K A L+K + L A L G + K+G L A++ F L P +
Sbjct: 54 KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113
Query: 135 LCQLSMLERSMAQGSE-NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
L + ++R +Q + +I + + + V D
Sbjct: 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC---------- 163
Query: 194 WDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248
+ A D + N + ++ +T+ L ++E +LS LK
Sbjct: 164 ------FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR-ECLK 216
Query: 249 -DP 250
D
Sbjct: 217 LDQ 219
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 28/220 (12%), Positives = 68/220 (30%), Gaps = 37/220 (16%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
L+ + E + A L A KL +A+ + + ++ GD + + L
Sbjct: 158 ELRAECFIKEGEP-RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 128 KGPN----KKILCQLSMLERSMAQGSE-NQAEIVEESIQHAKEAITLD----VKDGNSWY 178
+ Q+ L + + E + ++ + + + S
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276
Query: 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLE 233
+ + + A + + N + + A E
Sbjct: 277 RICHC----------------FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320
Query: 234 NYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLK 273
Y+ A+ +EA+ + + ++++ L+K + LLK
Sbjct: 321 MYDEAIQDYEAAQEHNEN---DQQIR---EGLEKAQRLLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-10
Identities = 20/165 (12%), Positives = 42/165 (25%), Gaps = 15/165 (9%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSM 140
DA AV +P A+ + G AA ++ + Q
Sbjct: 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
L + ++E+ K+ + + + + + + +
Sbjct: 80 LLLKQGK--------LDEAEDDFKKVLKSNPSEQEEKEAESQL-VKADEMQRLRSQALDA 130
Query: 201 QSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALS 240
Y A E + +L A +A+S
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
|
| >2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens} Length = 166 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 3e-13
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 253 NATEEVQMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL---------SSSHKRAT 301
+ + Q ++ LD++ +LL KG KTK++ S+ SL L S+S ++ T
Sbjct: 1 SMRQREQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVT 60
Query: 302 VDL-----LSEGLNKAVAVVGKVLFFVKHENVTPL 331
++L L G+N ++GKV+F + E P
Sbjct: 61 LELKPLSTLQPGVNSGAVILGKVVFSLTTEEKVPF 95
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 35/210 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL--CQLS 139
K A L+K ++L A L G + K+G L A++ F L P++ Q
Sbjct: 77 KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Query: 140 MLERSMAQGSENQAEI------VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
+++ Q +QA +I + + + V D
Sbjct: 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC---------- 186
Query: 194 WDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248
+ A D + N + ++ +T+ L ++E +LS LK
Sbjct: 187 ------FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR-ECLK 239
Query: 249 -DP----SLNATEEVQMMVNLLDKIENLLK 273
D ++V+ + L++ E L++
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIR 269
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 29/229 (12%), Positives = 56/229 (24%), Gaps = 29/229 (12%)
Query: 33 DKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV 92
KV K + + + A L K +
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT-------AAIAFLDKIL 170
Query: 93 KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLERSMAQGSEN 151
++ A+ C K+G+ A + A N + ++S L +
Sbjct: 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD---- 226
Query: 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211
E S+ +E + LD + + + + ++ L Y +A
Sbjct: 227 ----HELSLSEVRECLKLDQDHKRCFAHYKQVKK----LNKLIESAEELIRDGRYTDATS 278
Query: 212 D--ERMKSNPD-------LYFNCATVNKYLENYERALSGFEASALKDPS 251
MK+ P E A+ +P
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 21/190 (11%), Positives = 56/190 (29%), Gaps = 15/190 (7%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
L+ + E + A L A KL +A+ + + ++ GD + + L
Sbjct: 181 ELRAECFIKEGEP-RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 128 KGPN----KKILCQLSMLERSMAQGSEN-QAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182
+ Q+ L + + E + ++ + + +
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299
Query: 183 ACLTSFFVTGSWDHSKLLQSLKAYQNA-EKDERMKSNPDLYFNCATVNKYLENYERALSG 241
F ++++ + + N + + A E Y+ A+
Sbjct: 300 RICHCFSKDEKPV-----EAIRVCSEVLQMEP---DNVNALKDRAEAYLIEEMYDEAIQD 351
Query: 242 FEASALKDPS 251
+E + + +
Sbjct: 352 YETAQEHNEN 361
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 21/165 (12%), Positives = 41/165 (24%), Gaps = 15/165 (9%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSM 140
DA AV +P A+ + G AA + + Q
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
L + ++E+ K+ + + + + S + +
Sbjct: 103 LLLKQGK--------LDEAEDDFKKVLKSNPSENEEKEAQSQL-IKSDEMQRLRSQALNA 153
Query: 201 QSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALS 240
Y A E + +L A +A+S
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 18/183 (9%), Positives = 59/183 (32%), Gaps = 27/183 (14%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCI------------WKKGDL 115
Y + + ++ + + + + +KL+ + + G
Sbjct: 215 YKISTLYYQLGDH-ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 116 PAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175
A + + + P+ S + + E+I+ E + ++ + N
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK---PVEAIRVCSEVLQMEPDNVN 330
Query: 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235
+ + A L +D ++++ Y+ A+ E +++ + + L+
Sbjct: 331 ALKDRAEAYLI----EEMYD-----EAIQDYETAQ--EHNENDQQIREGLEKAQRLLKQS 379
Query: 236 ERA 238
++
Sbjct: 380 QKR 382
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 13/178 (7%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
+ G +V + A +LSKA L + AW+ G + + A + A
Sbjct: 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153
Query: 128 KGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187
C L ML + G N + + + +A+++ +D + +G
Sbjct: 154 LMKG----CHLPMLYIGLEYGLTNN---SKLAERFFSQALSIAPEDPFVMHEVGVV---- 202
Query: 188 FFVTGSWDH--SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
F G W L +L+ + + + L N V + L+ Y AL
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 27/167 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
K S ++ +P A + + + + P+ +
Sbjct: 39 KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW----- 93
Query: 142 ERSMAQGS--ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199
A G E + ++ +A TL+ G +W G++ F V D
Sbjct: 94 ---FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS----FAVESEHD---- 142
Query: 200 LQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
Q++ AY A + N + A F
Sbjct: 143 -QAMAAYFTA-----AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 22/171 (12%), Positives = 50/171 (29%), Gaps = 27/171 (15%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
K AE S+A+ + P +G ++ G+ A+ F AL K +
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA----IGNEVT 231
Query: 142 ERSMAQGSENQAEI------VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWD 195
N + E++ + ++A+ L ++ +++ +G
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS---------L 282
Query: 196 HSKLLQSLKAYQNAEKDERMKSNPD---LYFNCATVNKYLENYERALSGFE 243
++ + A + D + A G +
Sbjct: 283 MGNFENAVDYFHTA-----LGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 21/175 (12%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP-AAKNCFNLALSKGPNKKILCQLSML 141
+ K V L PS +W +G G A+ + A +
Sbjct: 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT--------YG 125
Query: 142 ERSMAQGSENQA-EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
+A G ++++ A L +G +
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG---------LTNNSK 176
Query: 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255
+ + + A +P + V ++ A F + K ++
Sbjct: 177 LAERFFSQAL--SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 22/179 (12%), Positives = 52/179 (29%), Gaps = 36/179 (20%)
Query: 80 YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK------K 133
Y K +E + ++V D + L + D ++ + K P
Sbjct: 3 YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
I L L ++ E + + + L + SW+ +G + + G
Sbjct: 63 IGT-LVELNKA------------NELFYLSHKLVDLYPSNPVSWFAVGCY----YLMVGH 105
Query: 194 WDHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFE-ASALK 248
+ + + A + +++A++ + A+ L
Sbjct: 106 KNE----HARRYLSKA-----TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 6e-12
Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 24/170 (14%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
A +A+K NP +A L K G + A +++ P +
Sbjct: 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
L +G +E+++ K+A ++ + G
Sbjct: 82 AYVALYRQAEDRERGKGY----LEQALSVLKDAERVNPRYAPLHLQRGLVYA-------- 129
Query: 194 WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
+ ++ + + A ++ P++ A + + + AL+ +
Sbjct: 130 -LLGERDKAEASLKQA---LALEDTPEIRSALAELYLSMGRLDEALAQYA 175
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-08
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 24/139 (17%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ A L A ++NP A L G G+ A+ AL+ +I L+ L
Sbjct: 101 EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
SM + ++E++ +A+ KD + +A L
Sbjct: 161 YLSMGR--------LDEALAQYAKALEQAPKDLDLRVRYASA----------------LL 196
Query: 202 SLKAYQNAEKDERMKSNPD 220
+ A + ++ +
Sbjct: 197 LKGKAEEAARAAALEHHHH 215
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 34/165 (20%)
Query: 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------KILCQLSMLERSMAQGSE 150
L LG ++ G AA F AL + P + +L ++
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV--------- 55
Query: 151 NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA--CLTSFFVTGSWDHSKLLQSLKAYQN 208
++++ K + + + L A L L Q+L ++
Sbjct: 56 ------NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109
Query: 209 AEKDERMKSNPDL---YFNCATVNKYLENYERALSGFE-ASALKD 249
A + NP + V L ++A + + A AL+D
Sbjct: 110 A-----ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+A +KA++ P D + S + KG A L +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 34/193 (17%)
Query: 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121
+ A EY G + AE H + + P L L S ++ L + +
Sbjct: 4 ELAHREYQAGDF--------EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 122 FNLALSKGPN-KKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180
LA+ + P + L + + Q ++E+I+H + A+ L + + NL
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQ--------LQEAIEHYRHALRLKPDFIDGYINL 107
Query: 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYER 237
A G + +++AY +A ++ NPDL + + K L E
Sbjct: 108 AAA----LVAAGDME-----GAVQAYVSA-----LQYNPDLYCVRSDLGNLLKALGRLEE 153
Query: 238 ALSGFEASALKDP 250
A + + + P
Sbjct: 154 AKACYLKAIETQP 166
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 9e-12
Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 45/196 (22%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
L I + + A+K NP LA+A+ LG+ ++G L A + AL
Sbjct: 37 LLLSSIHFQCRRL-DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95
Query: 128 KGPNKK--------ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179
P+ L + E ++Q A+ + +
Sbjct: 96 LKPDFIDGYINLAAALVAAGDM---------------EGAVQAYVSALQYNPDLYCVRSD 140
Query: 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLEN 234
LGN L++L + A+ E + + N V
Sbjct: 141 LGNL----------------LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 235 YERALSGFEASALKDP 250
A+ FE + DP
Sbjct: 185 IWLAIHHFEKAVTLDP 200
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 40/172 (23%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------KI 134
+A +H A++L P D ++ L + + GD+ A + AL P+ +
Sbjct: 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144
Query: 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194
L L L EE+ +AI +W NLG
Sbjct: 145 LKALGRL---------------EEAKACYLKAIETQPNFAVAWSNLGCVFN--------- 180
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
++ ++ ++ A + +P+ Y N V K ++RA++ +
Sbjct: 181 AQGEIWLAIHHFEKA-----VTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 26/172 (15%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141
A +A+ L+P+ A L +++G + A + + A+ P+ C L+
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ V E+ A+ L +S NL N G+ + +
Sbjct: 281 LKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLANI----KREQGNIE-----E 323
Query: 202 SLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFEASALKDP 250
+++ Y+ A ++ P+ + N A+V + + AL ++ + P
Sbjct: 324 AVRLYRKA-----LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 26/173 (15%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140
A H KAV L+P+ DA++ LG+ + + A + ALS PN + L+
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
+ ++ +I + AI L +++ NL NA + +
Sbjct: 246 VYYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALK---------EKGSVA 288
Query: 201 QSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFEASALKDP 250
++ Y A ++ P N A + + N E A+ + + P
Sbjct: 289 EAEDCYNTA-----LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 40/173 (23%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
++A+ KA++ P+ A AW LG +G++ A + F A++ PN
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
+L + + + ++ A++L NL
Sbjct: 212 VLKEARIF---------------DRAVAAYLRALSLSPNHAVVHGNLACVYY-------- 248
Query: 194 WDHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
+ + ++ Y+ A ++ P Y N A K + A +
Sbjct: 249 -EQGLIDLAIDTYRRA-----IELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSM 140
+AED + A++L P+ AD+ L + ++G++ A + AL P L+
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
+ + + ++E++ H KEAI + +++ N+GN
Sbjct: 348 VLQQQGK--------LQEALMHYKEAIRISPTFADAYSNMGNT 382
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 5e-09
Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSM 140
A D +A++L P DA+ L + + +KG + A++C+N AL P L L+
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
++R +EE+++ ++A+ + + + NL + KL
Sbjct: 314 IKREQGN--------IEEAVRLYRKALEVFPEFAAAHSNLASVLQ---------QQGKLQ 356
Query: 201 QSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLEN 234
++L Y+ A ++ +P Y N K +++
Sbjct: 357 EALMHYKEA-----IRISPTFADAYSNMGNTLKEMQD 388
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 9/167 (5%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
+ A+ +P A+AW LG + + AA L PN +++
Sbjct: 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN----NLKALMA 138
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS-WDHSKLLQ 201
+++ + + +++ + K I + K N + + ++ S D S L
Sbjct: 139 LAVSYTNTSH---QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195
Query: 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248
+ Y A +PDL + + RA+ F A AL
Sbjct: 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA-ALT 241
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 28/135 (20%)
Query: 82 KDAEDHLSKAVKLNPSLADA--WLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQ-- 137
+ ++ +A N + D LG G+ A + FN AL+ P L
Sbjct: 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253
Query: 138 ---LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194
L+ +RS EE+++ A+ + S YNLG +C+
Sbjct: 254 GATLANGDRS------------EEAVEAYTRALEIQPGFIRSRYNLGISCI--------- 292
Query: 195 DHSKLLQSLKAYQNA 209
+ +++ + A
Sbjct: 293 NLGAYREAVSNFLTA 307
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 40/166 (24%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-------NKKI 134
A D + A+ + P W LG+ + A + AL P N I
Sbjct: 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Query: 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194
C N E++ + A++L K N A
Sbjct: 290 SCI-------------NLGAY-REAVSNFLTALSLQRKSRNQQQVPHPA----------- 324
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240
+ +L+ + P+L+ A L+ RA +
Sbjct: 325 ISGNIWAALRIALSLMD------QPELFQ--AANLGDLDVLLRAFN 362
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-11
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 21/166 (12%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
+A + SK+ ++P AW+ +G+ A + + A L L
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG----THLPYLF 446
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202
M + + ++ + + L D LG + S + +
Sbjct: 447 LGMQHMQLGN---ILLANEYLQSSYALFQYDPLLLNELGVVAF---------NKSDMQTA 494
Query: 203 LKAYQNA-----EKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
+ +QNA + K + N + L+ Y+ A+
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-11
Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 34/178 (19%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL-----C 136
D +K ++++P D + + + + G+ N + + P K +
Sbjct: 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381
Query: 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196
+ + + E+ ++ ++ T+D + G +W ++ F + G D
Sbjct: 382 YYLCVNK------------ISEARRYFSKSSTMDPQFGPAWIGFAHS----FAIEGEHD- 424
Query: 197 SKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFEASALKDPS 251
Q++ AY A + Y + L N A ++S
Sbjct: 425 ----QAISAYTTA-----ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 7e-09
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 16/110 (14%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKK-------- 133
A ++L + L LG + K D+ A N F AL +
Sbjct: 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
L R + + +I + + L D N +
Sbjct: 518 TWANLGHAYRKLKM--------YDAAIDALNQGLLLSTNDANVHTAIALV 559
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 3e-08
Identities = 18/183 (9%), Positives = 50/183 (27%), Gaps = 22/183 (12%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
Y+ + + AED+L ++ +D LC ++ + L
Sbjct: 275 YMLKLNKTSHEDELRRAEDYL-SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 128 KGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187
P + + + + + + + +W +G
Sbjct: 334 IDPY----NLDVYPLHLASLHESGE---KNKLYLISNDLVDRHPEKAVTWLAVGIY---- 382
Query: 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSN-PDLYFNCATVNKYLENYERALSGFE-AS 245
+ ++ + + + M + A +++A+S + A+
Sbjct: 383 YLCVNKIS-----EARRYFSKSST---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434
Query: 246 ALK 248
L
Sbjct: 435 RLF 437
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 8e-08
Identities = 24/169 (14%), Positives = 57/169 (33%), Gaps = 27/169 (15%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141
A + A +L +L LG + G++ A + + +L +L ++
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS-------WYNLGNACLTSFFVTGSW 194
+ + ++ +I H + A+ L K ++ W NLG+A
Sbjct: 485 AFNKSD--------MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR--------- 527
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
++ A ++ +++ A V + + A++
Sbjct: 528 KLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLH 574
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 6e-07
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 82 KDAEDHLSKAVKL-------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K 133
+ A +H A+ L A W LG K AA + N L N
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
+ ++++ +I H E++ + + + L A
Sbjct: 552 VHTAIALVYLHKKI--------PGLAITHLHESLAISPNEIMASDLLKRA 593
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 9e-07
Identities = 24/170 (14%), Positives = 45/170 (26%), Gaps = 16/170 (9%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
K+A L + + A G + AK C+ AL ++
Sbjct: 184 KNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLV 241
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ E +++ + D S Y L H L+
Sbjct: 242 SNHLLTADEEWDLVLKLNYS---TYSKEDAAFLRSLYMLKLNKT---------SHEDELR 289
Query: 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251
+ Y ++ ++ + DL A + L+ DP
Sbjct: 290 RAEDYLSSI--NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 6e-06
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 43/247 (17%)
Query: 39 QNESDLALRLLGSVPPEQRKSPTQRATYE------------YLKGKILDVVPEYRKDAED 86
+ AL LLG P ++ YL+G++ + + A++
Sbjct: 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF-DRAKE 221
Query: 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERS-M 145
+A+ ++ +A+ L L A ++L L + + L M
Sbjct: 222 CYKEALMVDAKCYEAFDQLV-----SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276
Query: 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA---------CLTSF-------- 188
+ ++ E + +I K + + L
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336
Query: 189 FVTGSWD-HSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGF 242
+ + H L +R + + A F
Sbjct: 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396
Query: 243 E-ASALK 248
+S +
Sbjct: 397 SKSSTMD 403
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 39 QNESDLALRL----LGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL 94
+++ A+ L V Q AT+ G + Y A D L++ + L
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATW-ANLGHAYRKLKMY-DAAIDALNQGLLL 545
Query: 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+ + A+ + K A + +L+ PN
Sbjct: 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 20/157 (12%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSML 141
L AV+ P AWL L GD A + L+ P + + +L +
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ + E+ ++A + LG+A D +
Sbjct: 67 RWTQQR--------HAEAAVLLQQASDAAPEHPGIALWLGHALE---------DAGQAEA 109
Query: 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERA 238
+ AY A + + P + + L ++
Sbjct: 110 AAAAYTRA--HQLLPEEPYITAQLLNWRRRLCDWRAL 144
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 5e-11
Identities = 20/175 (11%), Positives = 50/175 (28%), Gaps = 29/175 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ A L+ AV+ + + + + G+ + + + +
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI 114
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ E+ ++ A+ ++ + G
Sbjct: 115 LTKLRN--------AEKELKKAEAEAYVNPEKAEEARLEGKE----------------YF 150
Query: 202 SLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251
+ + NA K +R + Y N A L ++ A++ + KDP+
Sbjct: 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 4e-09
Identities = 23/159 (14%), Positives = 42/159 (26%), Gaps = 28/159 (17%)
Query: 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEI 155
S+AD G+ +K A +N A + L + E +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGE-------- 53
Query: 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD--- 212
E +I +A+ + + + + + + D
Sbjct: 54 YETAISTLNDAVEQGREMRADYKVISKS----------------FARIGNAYHKLGDLKK 97
Query: 213 -ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250
A + L N E+ L EA A +P
Sbjct: 98 TIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 63/189 (33%)
Query: 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126
E+ IL + K+ + +NP A+ G + K D P A +
Sbjct: 108 EHRTADILTKLRNAEKELKKA-EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT--- 163
Query: 127 SKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT 186
E I +D + N A
Sbjct: 164 --------------------------------------EMIKRAPEDARGYSNRAAA--- 182
Query: 187 SFFVTGSWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSG 241
L L ++ A D E+ + Y AT ++ Y AL
Sbjct: 183 -------------LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229
Query: 242 FEASALKDP 250
+A+ KD
Sbjct: 230 LDAARTKDA 238
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-06
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 8/120 (6%)
Query: 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFN 123
A L+GK ++ +A ++ +K P A + + + K P A N
Sbjct: 139 AEEARLEGKEYFTKSDW-PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197
Query: 124 LALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
A+ K PN + + ++ AQ + + +++ A T D + N
Sbjct: 198 KAIEKDPN----FVRAYIRKATAQIAVKE---YASALETLDAARTKDAEVNNGSSAREID 250
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 7e-11
Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 44/175 (25%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
+ A KA++L+ S A A+ G+ K AK+ F AL G
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
+L +L + ++ + + A+ L+ D + + G
Sbjct: 134 VLVKLEQP---------------KLALPYLQRAVELNENDTEARFQFGMC---------- 168
Query: 194 WDHSKLLQSLKAYQNAEK--DERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
L + A + +P ++N Y EN E+AL +
Sbjct: 169 ------LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 44/175 (25%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKK-------- 133
+ A + +KA++ N A ++ + + +L A ++ AL +
Sbjct: 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
+ M +E+ ++A+ +++G+ +Y LG
Sbjct: 100 VYVVKEMY---------------KEAKDMFEKALRAGMENGDLFYMLGTV---------- 134
Query: 194 WDHSKLLQSLKAYQNAEK--DERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
L L+ + A ++ N + F + ALS F
Sbjct: 135 ------LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 4e-07
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 48/178 (26%)
Query: 83 DAEDHLSKAVKLNPSLADAW----LCLGSCIWKKGDLPAAKNCFNLALSKGPNK------ 132
+ H + L P + + GD A F A+ +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFV 190
+L ++ L E ++ +A+ LD ++Y GN
Sbjct: 63 FANLLSSVNEL---------------ERALAFYDKALELDSSAATAYYGAGNV------- 100
Query: 191 TGSWDHSKLLQSLKAYQNAEKDER--MKSNPDL---YFNCATVNKYLENYERALSGFE 243
+ Y+ A+ +++ + ++ TV LE + AL +
Sbjct: 101 ---------YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 23/110 (20%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
K A +L +AV+LN + +A G C+ +G L A + F + P
Sbjct: 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
E ++++ +AI + + +
Sbjct: 202 TYAYKENRE---------------KALEMLDKAIDIQPDHMLALHAKKLL 236
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 8e-11
Identities = 20/191 (10%), Positives = 44/191 (23%), Gaps = 32/191 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A + A P + +++
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ----VVAIA 382
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ E V+ + +A L + + + Q
Sbjct: 383 SNGGGK---QALETVQRLLPVLCQAHGLTPEQVVAIASHDGG----------------KQ 423
Query: 202 SLKAYQNAEKDER--MKSNPDL---YFNCATVNKYLENYERALSGFEASALKDPSLNATE 256
+L+ Q P + LE+ LS + + +
Sbjct: 424 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD----PALAALTND 479
Query: 257 EVQMMVNLLDK 267
+ + L +
Sbjct: 480 HLVALACLGGR 490
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 28/167 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A + A P + +
Sbjct: 259 QRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIA---- 314
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
S G + E V+ + +A L + + + Q
Sbjct: 315 --SNGGGKQAL-ETVQRLLPVLCQAHGLTPQQVVAIASHDGG----------------KQ 355
Query: 202 SLKAYQNAEKDER--MKSNPDL---YFNCATVNKYLENYERALSGFE 243
+L+ Q P+ + + LE +R L
Sbjct: 356 ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 402
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 24/174 (13%), Positives = 43/174 (24%), Gaps = 28/174 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A + A A P + +
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIA---- 178
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
S G + E V+ + +A L + + + G Q
Sbjct: 179 --SNGGGKQAL-ETVQRLLPVLCQAHGLTPQQVVAIASNGGG----------------KQ 219
Query: 202 SLKAYQNAEKD--ERMKSNPDL---YFNCATVNKYLENYERALSGFEASALKDP 250
+L+ Q + P + + LE +R L + P
Sbjct: 220 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 23/163 (14%), Positives = 40/163 (24%), Gaps = 28/163 (17%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A G + A P +
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVA 346
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
S G + E V+ + +A L + + + G Q
Sbjct: 347 IASHDGGKQAL-ETVQRLLPVLCQAHGLTPEQVVAIASNGGG----------------KQ 389
Query: 202 SLKAYQNAEKDER--MKSNPDL---YFNCATVNKYLENYERAL 239
+L+ Q P+ + + LE +R L
Sbjct: 390 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 20/167 (11%), Positives = 39/167 (23%), Gaps = 28/167 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A + A P + + ++
Sbjct: 89 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV----AIA 144
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ E V+ + +A L + + + G Q
Sbjct: 145 SHDGGK---QALETVQALLPVLCQAHGLTPEQVVAIASNGGG----------------KQ 185
Query: 202 SLKAYQNAEKDER--MKSNPD---LYFNCATVNKYLENYERALSGFE 243
+L+ Q P + + LE +R L
Sbjct: 186 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 21/168 (12%), Positives = 41/168 (24%), Gaps = 30/168 (17%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140
+ L +A L P A G + A P + + S
Sbjct: 225 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSG 284
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
++++ V+ + +A L + + + G
Sbjct: 285 GKQALET--------VQRLLPVLCQAHGLTPQQVVAIASNGGG----------------K 320
Query: 201 QSLKAYQNAEKDER--MKSNPDL---YFNCATVNKYLENYERALSGFE 243
Q+L+ Q P + + LE +R L
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 17/167 (10%), Positives = 38/167 (22%), Gaps = 30/167 (17%)
Query: 90 KAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQG 148
+ L P A + A P + + ++++
Sbjct: 63 APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET- 121
Query: 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208
V+ + +A L + + + Q+L+ Q
Sbjct: 122 -------VQRLLPVLCQAHGLTPEQVVAIASHDGG----------------KQALETVQA 158
Query: 209 AEKDERM--KSNPD---LYFNCATVNKYLENYERALSGFEASALKDP 250
P+ + + LE +R L + P
Sbjct: 159 LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-11
Identities = 23/199 (11%), Positives = 53/199 (26%), Gaps = 48/199 (24%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK---NCFNL 124
+ L Y +A + +K + + C ++ A+ +
Sbjct: 7 FRYADFLFKNNNY-AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 125 ALSKGPNK--------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176
++ K KIL + +IQ + A+ D +
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQD---------------SLAIQQYQAAVDRDTTRLDM 110
Query: 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKY 231
+ +G+ + + A + ++P +++ Y
Sbjct: 111 YGQIGSY----------------FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154
Query: 232 LENYERALSGFEASALKDP 250
+ Y +A S F P
Sbjct: 155 NKEYVKADSSFVKVLELKP 173
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-10
Identities = 24/174 (13%), Positives = 41/174 (23%), Gaps = 47/174 (27%)
Query: 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------KILCQ 137
+ V + + + G + KKG A + A+ + +
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120
Query: 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197
+IQ+ ++ I D +Y LG A
Sbjct: 121 KGNF---------------PLAIQYMEKQIRPTTTDPKVFYELGQA-------------- 151
Query: 198 KLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYL---ENYERALSGFE 243
K Y A+ E + Y A N A +E
Sbjct: 152 --YYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 7e-09
Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 21/169 (12%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSM 140
A AV + + D + +GS + KG+ P A + K+ +L
Sbjct: 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ 150
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
+ ++ + + L + A K
Sbjct: 151 AYYYNKE--------YVKADSSFVKVLELKPNIYIGYLWRARA----NAAQDPDT--KQG 196
Query: 201 QSLKAYQNA---EKDERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
+ Y+ K +L A + +A + ++
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 18/150 (12%), Positives = 40/150 (26%), Gaps = 25/150 (16%)
Query: 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEE 158
D ++K + A FN +K N + R++ + ++ ++
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR----RAVCYYELAKYDLAQK 58
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-----E 213
I+ + + G L A + +
Sbjct: 59 DIETYFSKVNATKAKSADFEYYGKI----------------LMKKGQDSLAIQQYQAAVD 102
Query: 214 RMKSNPDLYFNCATVNKYLENYERALSGFE 243
R + D+Y + N+ A+ E
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 1e-10
Identities = 24/198 (12%), Positives = 60/198 (30%), Gaps = 30/198 (15%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN---------- 131
+ E + +A++ P + D +K + A AL PN
Sbjct: 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289
Query: 132 --KKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFF 189
+ + Q+ L + G E++ ++ H K+A + L +
Sbjct: 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA---- 345
Query: 190 VTGSWDHSKLLQSLKAYQNA-EKDERMKSNPDLYFNCATVNKY--------LENYERALS 240
+ ++ +Q K+ + L+ Y + ++ +
Sbjct: 346 -----LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400
Query: 241 GFEASALKDPSLNATEEV 258
+ S K+ + +++
Sbjct: 401 INQKSREKEKMKDKLQKI 418
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-10
Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 27/211 (12%)
Query: 33 DKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV 92
K + + +G + + L E A HL KA
Sbjct: 271 KKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL---ELIGHAVAHLKKAD 327
Query: 93 KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQ 152
+ N +L L S A+ F SK L + Q
Sbjct: 328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL---RYGNFQLYQ 384
Query: 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212
+ +++I H E + ++ K S + K+ L+ +
Sbjct: 385 MKCEDKAIHHFIEGVKINQK--------------------SREKEKMKDKLQKIAK-MRL 423
Query: 213 ERMKSNPDLYFNCATVNKYLENYERALSGFE 243
+ ++ + A + + E ++A E
Sbjct: 424 SKNGADSEALHVLAFLQELNEKMQQADEDSE 454
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 31/183 (16%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWK----------KGDLPAAKNCFNLALSKGPNK 132
D + ++ K + + + + AK CF AL K P
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171
Query: 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTG 192
+ S + + + +I ++AI L+ + L
Sbjct: 172 PE-FTSGLAIASYRLDNWPPS---QNAIDPLRQAIRLNPDNQYLKVLLALKL-------- 219
Query: 193 SWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGFEASAL 247
K+ + + EK E+ D+ + A + + ++A+ + +
Sbjct: 220 ----HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275
Query: 248 KDP 250
P
Sbjct: 276 YIP 278
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 19/153 (12%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP---AAKNCFNLALSKGP-NKKILCQ 137
+ A+ KA++ P + L ++ + P A + A+ P N+ +
Sbjct: 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214
Query: 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197
L++ M + E E + +EA+ + + + D
Sbjct: 215 LALKLHKMREEGEE----EGEGEKLVEEALEKAPGVTDVLRSAAKF----YRRKDEPD-- 264
Query: 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230
++++ + A E + +N L+ +
Sbjct: 265 ---KAIELLKKAL--EYIPNNAYLHCQIGCCYR 292
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-10
Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 44/210 (20%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLC----------------LGSCIWKKGDLPAAKNCFNLA 125
A + + + LN + + L K + A +
Sbjct: 21 GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80
Query: 126 LSKGPN-KKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184
L K PN L + ++ Q +++++ ++ + L+ + + LGN
Sbjct: 81 LQKAPNNVDCLEACAEMQVCRGQ--------EKDALRMYEKILQLEADNLAANIFLGNYY 132
Query: 185 LTSFFVTGSWDHSKLLQSLKAYQNA-EKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
+ + + L+ + + + YE+A + +
Sbjct: 133 YLT--------AEQEKKKLETDYKKLSSPTK---MQYARYRDGLSKLFTTRYEKARNSLQ 181
Query: 244 ASALKDPSLNATEEVQMMVNLLDKIENLLK 273
L+ PS A LDKI + K
Sbjct: 182 KVILRFPSTEAQ-------KTLDKILRIEK 204
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 9/127 (7%)
Query: 58 KSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117
K+ + Y A + ++ P+ D +G
Sbjct: 48 KNSEISSKLATELALAYKKNRNY-DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106
Query: 118 AKNCFNLALSKGP-NKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176
A + L N L AE ++ ++ + ++ K +
Sbjct: 107 ALRMYEKILQLEADNLAANIFLGNYYY-------LTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 177 WYNLGNA 183
Y G +
Sbjct: 160 RYRDGLS 166
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 9/64 (14%), Positives = 17/64 (26%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
G + E K + K + + A G A+N +
Sbjct: 126 IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185
Query: 128 KGPN 131
+ P+
Sbjct: 186 RFPS 189
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 22/173 (12%), Positives = 49/173 (28%), Gaps = 25/173 (14%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSM 140
A L+ A L+P L + + AA L P +++
Sbjct: 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 141 LERSMAQGSENQAEIV-------EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
+ + + + E A+ ++ D +LG + ++ +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL----YNLSNN 187
Query: 194 WDHSKLLQSLKAYQNAEKDERMKSNPD---LYFNCATVNKYLENYERALSGFE 243
+D + + A ++ PD L+ + AL +
Sbjct: 188 YD-----SAAANLRRA-----VELRPDDAQLWNKLGATLANGNRPQEALDAYN 230
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 20/171 (11%), Positives = 43/171 (25%), Gaps = 14/171 (8%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
+A + P +AW LG + A N A P
Sbjct: 39 EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----DIAVHAA 94
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202
+++ +E+ ++ + + + A +
Sbjct: 95 LAVSHTNEHN---ANAALASLRAWLLSQPQYEQLGSVNLQA-DVDIDDLNVQSEDFFFAA 150
Query: 203 LKAYQNAEKD----ERMKSN-PDLYFNCATVNKYLENYERALSGFEASALK 248
Y+ M N L+ + + NY+ A + A++
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR-AVE 200
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 26/133 (19%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL-----C 136
++ L A+++NP+ A LG + +A A+ P+ L
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA 214
Query: 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196
L+ R +E++ A+ ++ YN+ + +
Sbjct: 215 TLANGNRP------------QEALDAYNRALDINPGYVRVMYNMAVSYS---------NM 253
Query: 197 SKLLQSLKAYQNA 209
S+ + K A
Sbjct: 254 SQYDLAAKQLVRA 266
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 39/194 (20%)
Query: 71 GKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129
G +L +Y +A NP + + + G + K +L A F
Sbjct: 1 GHMLQNNTDYPFEAN---------NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA 51
Query: 130 PNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFF 189
P ++ + + Q + E +I A LD KD L + T
Sbjct: 52 PEREEAWRS----LGLTQ---AENEKDGLAIIALNHARMLDPKDIAVHAALAVS-HT--- 100
Query: 190 VTGSWDHSKLLQSLKAYQNA-------------EKDERMKSNPDLYFNCATVNKYLENYE 236
+ +L + + + + + Y
Sbjct: 101 -----NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 237 RALSGFEASALKDP 250
+ A+ +P
Sbjct: 156 ECRTLLHAALEMNP 169
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 21/108 (19%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-------NKKIL 135
A +L +AV+L P A W LG+ + A + +N AL P N +
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
N ++ + + + AI + V
Sbjct: 250 YS-------------NMSQY-DLAAKQLVRAIYMQVGGTTPTGEASRE 283
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 7e-10
Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 27/175 (15%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN--------KK 133
A L + ++L P A + L + A L P ++
Sbjct: 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--DVKDGNSWYNLGNACLTSFFVT 191
+ GS + E + A+ L D + LG F ++
Sbjct: 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL----FNLS 230
Query: 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPD---LYFNCATVNKYLENYERALSGFE 243
G +D +++ + A + P+ L+ E A++ +
Sbjct: 231 GEYD-----KAVDCFTAA-----LSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 14/172 (8%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
+A AV+ +P +AW LG+ + A + L P+ Q +++
Sbjct: 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALMA 137
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202
+++ +E+ ++ + ++ + + + LL
Sbjct: 138 LAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194
Query: 203 ------LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248
+ + A + + +PD+ + Y++A+ F A AL
Sbjct: 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-ALS 245
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 9e-07
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 28/135 (20%)
Query: 82 KDAEDHLSKAVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQ-- 137
+ ++ AV+L+P+ D LG G+ A +CF ALS PN +L
Sbjct: 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 257
Query: 138 ---LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194
L+ +S EE++ + A+ L S YNLG +C+
Sbjct: 258 GATLANGNQS------------EEAVAAYRRALELQPGYIRSRYNLGISCI--------- 296
Query: 195 DHSKLLQSLKAYQNA 209
+ ++++ + A
Sbjct: 297 NLGAHREAVEHFLEA 311
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 21/109 (19%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-------NKKI 134
A D + A+ + P+ W LG+ + A + AL P N I
Sbjct: 234 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293
Query: 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
C N E+++H EA+ + K G
Sbjct: 294 SCI-------------NLGAH-REAVEHFLEALNMQRKSRGPRGEGGAM 328
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 19/169 (11%), Positives = 42/169 (24%), Gaps = 21/169 (12%)
Query: 79 EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP-AAKNCFNLALSKGPNKKILCQ 137
+ E + KL L + D ++ +
Sbjct: 5 RAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDH 64
Query: 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197
E + + E + ++ + A+ D K +W LG ++
Sbjct: 65 PQPFEEGLRRLQEGD---LPNAVLLFEAAVQQDPKHMEAWQYLGTTQA---------ENE 112
Query: 198 KLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
+ L ++ A + ++ PD A +A
Sbjct: 113 QELLAISALRRC-----LELKPDNQTALMALAVSFTNESLQRQACEILR 156
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 8e-10
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 40/173 (23%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
A L + + D L LG K G + +L+ P+
Sbjct: 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
Q+ + ++ + + + N + LG A
Sbjct: 85 TYVQVQKY---------------DLAVPLLIKVAEANPINFNVRFRLGVALD-------- 121
Query: 194 WDHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
+ + +++ +++ A + P+ + A + + +E AL F+
Sbjct: 122 -NLGRFDEAIDSFKIA-----LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 1e-04
Identities = 9/50 (18%), Positives = 14/50 (28%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+A D A+ L P+ + + G A F A
Sbjct: 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 3e-04
Identities = 14/165 (8%), Positives = 34/165 (20%), Gaps = 44/165 (26%)
Query: 92 VKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------KILCQLSMLER 143
+ + + G K G A + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV-- 58
Query: 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203
+ + + ++ + LG +
Sbjct: 59 -------------DRGTELLERSLADAPDNVKVATVLGLT----------------YVQV 89
Query: 204 KAYQNAEK--DERMKSNPDL---YFNCATVNKYLENYERALSGFE 243
+ Y A + ++NP F L ++ A+ F+
Sbjct: 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 25/197 (12%), Positives = 60/197 (30%), Gaps = 40/197 (20%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------KI 134
A+ L KA++++PS ADA L + + A + AL+
Sbjct: 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114
Query: 135 LCQLSMLERSM---------------AQGSENQAEI------VEESIQHAKEAITLDVKD 173
L + E + ++ EN + ++ ++ ++++ L+
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174
Query: 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE 233
+ + + + + + + + Y + N + K E
Sbjct: 175 PSVALEMADL---------LYKEREYVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFE 223
Query: 234 NYERALSGFEASALKDP 250
+ + A S P
Sbjct: 224 DRDTAASYGLQLKRLYP 240
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILC 136
VP + + K K DA++ LG ++G+ AK AL P+
Sbjct: 15 VPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----- 69
Query: 137 QLSMLERSMAQGSENQAEI------VEESIQHAKEAITLDVKDGNSWYNLGNA-CLTSFF 189
A A + + + + ++A+ D ++ N G
Sbjct: 70 --------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY----- 116
Query: 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
+ + ++ + A +D ++ N V+ ++ +A FE
Sbjct: 117 -----EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
A+++ K+++LN + L + ++K+ + A+ ++L G
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 1e-09
Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 33/169 (19%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSML 141
+A KA+++ P A A L S + ++G L A + A+ P +
Sbjct: 27 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ M V+ ++Q AI ++ ++ NL + D + +
Sbjct: 87 LKEMQD--------VQGALQCYTRAIQINPAFADAHSNLASIHK---------DSGNIPE 129
Query: 202 SLKAYQNAEKDERMKSNPDL---YFNCATVNKYL-------ENYERALS 240
++ +Y+ A +K PD Y N A + + E ++ +S
Sbjct: 130 AIASYRTA-----LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 8e-09
Identities = 29/158 (18%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSMLERSMAQGSENQ 152
P+ AD+ L + ++G++ A + AL P L+ + + +
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK----- 58
Query: 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212
++E++ H KEAI + +++ N+GN + + +L+ Y A
Sbjct: 59 ---LQEALMHYKEAIRISPTFADAYSNMGNTL---------KEMQDVQGALQCYTRAI-- 104
Query: 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250
+ + D + N A+++K N A++ + + P
Sbjct: 105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
A + ++L+P+ A L G ++ G A++ PN L
Sbjct: 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND----PFRSLW 150
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202
+A+ ++ + E QH +++ + LGN + + + +
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS----------EQTLMERL 200
Query: 203 LKAYQNA-EKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
+ E + F L + + A + F+
Sbjct: 201 KADATDNTSLAEH---LSETNFYLGKYYLSLGDLDSATALFK 239
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 25/185 (13%), Positives = 46/185 (24%), Gaps = 45/185 (24%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
E L+ + A G G A+N F+ AL+ P+
Sbjct: 26 ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193
L Q + + + + LD + N G A
Sbjct: 86 YLTQAGNF---------------DAAYEAFDSVLELDPTYNYAHLNRGIA---------- 120
Query: 194 WDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248
L + A+ D + ++P + L + ++A + K
Sbjct: 121 ------LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEK 173
Query: 249 DPSLN 253
Sbjct: 174 SDKEQ 178
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+ + + L L++ LG GDL +A F LA++ +
Sbjct: 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 27/186 (14%), Positives = 48/186 (25%), Gaps = 41/186 (22%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
+ A + A+K +P AWL A+ F ALS P+
Sbjct: 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG--NSWYNLGNACLTSFFVT 191
LC + ES+ + +A+ + N G
Sbjct: 85 FLCG--------------RLNRPAESMAYFDKALADPTYPTPYIANLNKGIC-------- 122
Query: 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFEASALK 248
S + + + + + + P + A A F+ +
Sbjct: 123 -SAKQGQFGLAEAYLKRS-----LAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176
Query: 249 DPSLNA 254
L A
Sbjct: 177 VEVLQA 182
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 18/155 (11%), Positives = 42/155 (27%), Gaps = 27/155 (17%)
Query: 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAE 154
+++ L + D A AL P +AE
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-------------NELAWLVRAE 50
Query: 155 I------VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208
I +++ + ++A+++ N G L ++ +S+ +
Sbjct: 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF-LCG-------RLNRPAESMAYFDK 102
Query: 209 AEKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243
A D + N + + A + +
Sbjct: 103 ALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.5 bits (117), Expect = 2e-07
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
+A ++ KA++L+P A+AW LG+ +K+GD A + AL P
Sbjct: 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
+ +E+I++ ++A+ LD + +WYNLGNA
Sbjct: 78 AYYKQGDY---------------DEAIEYYQKALELDPRSAEAWYNLGNA 112
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 2e-04
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+A ++ KA++L+P A+AW LG+ +K+GD A + AL P
Sbjct: 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-07
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 4/101 (3%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
L ++ NP ++ W LG + D + + AL L
Sbjct: 28 AQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL----YAA 83
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
+ + + ++ +A+ LD + + L +
Sbjct: 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133
+A ++ KA++L+P+ A+AW LG+ +K+GD A + AL PN
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85
Query: 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
+ +E+I++ ++A+ LD + + NLGNA
Sbjct: 86 AYYKQGDY---------------DEAIEYYQKALELDPNNAEAKQNLGNA 120
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-07
Identities = 19/147 (12%), Positives = 41/147 (27%), Gaps = 20/147 (13%)
Query: 88 LSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLERSMA 146
L+ L+ + LG ++ G A+ F + + L +S+
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 147 QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206
E+++Q +D+ + ++ L L + +
Sbjct: 67 L--------YEQALQSYSYGALMDINEPRFPFHAAECHL---------QLGDLDGAESGF 109
Query: 207 QNAEKDERMKSNPDLYFNCATVNKYLE 233
+A + P A LE
Sbjct: 110 YSAR--ALAAAQPAHEALAARAGAMLE 134
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132
+ A S ++ + C + GDL A++ F A + +
Sbjct: 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
Y G ++ DA+ L+ A +L LG+C G A ++
Sbjct: 22 YALGFNQYQAGKW-DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 128 KGPN 131
N
Sbjct: 81 MDIN 84
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132
A HL A+ +P+ + AW LG + +GD A+ + L+ ++
Sbjct: 37 AALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 23/197 (11%), Positives = 46/197 (23%), Gaps = 33/197 (16%)
Query: 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118
+P Q + + L +A L P A +
Sbjct: 222 TPAQVVAI-ASHDGGKQALETM-QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRL 279
Query: 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177
A P++ + ++++ V+ + +A L +
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALET--------VQRLLPVLCQAHGLTPDQVVAI 331
Query: 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER--MKSNPDL---YFNCATVNKYL 232
+ Q+L+ Q PD + + L
Sbjct: 332 ASHDGG----------------KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375
Query: 233 ENYERALSGF-EASALK 248
E +R L +A L
Sbjct: 376 ETVQRLLPVLCQAHGLT 392
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-06
Identities = 23/172 (13%), Positives = 42/172 (24%), Gaps = 29/172 (16%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
L +A L P+ A + A P++ +++
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ----VVAIAS 265
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202
+ E V+ + +A L + + G Q+
Sbjct: 266 NIGGK---QALETVQRLLPVLCQAHGLTPDQVVAIASHGGG----------------KQA 306
Query: 203 LKAYQNAEKDER--MKSNPDL---YFNCATVNKYLENYERALSGFE-ASALK 248
L+ Q PD + + LE +R L A L
Sbjct: 307 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 3e-06
Identities = 22/173 (12%), Positives = 43/173 (24%), Gaps = 29/173 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A G + A P++ ++
Sbjct: 514 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ-------VV 566
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ G + E V+ + +A L + + Q
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG----------------KQ 610
Query: 202 SLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENYERALSGF-EASALK 248
+L+ Q + + + LE +R L +A L
Sbjct: 611 ALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 5e-05
Identities = 32/222 (14%), Positives = 56/222 (25%), Gaps = 38/222 (17%)
Query: 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLK------GKILDVVPEYRKDAEDHLSKAV 92
Q AL L + E R P Q T + +K ++ V R +
Sbjct: 129 QWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTG---APL 185
Query: 93 KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQ 152
L P+ A + A P +++ S A +
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPA-QVVAIASHDGGKQALET--- 241
Query: 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212
++ + +A L + + Q+L+ Q
Sbjct: 242 ---MQRLLPVLCQAHGLPPDQVVAIASNIGG----------------KQALETVQRLLPV 282
Query: 213 ER--MKSNPDL---YFNCATVNKYLENYERALSGF-EASALK 248
PD + + LE +R L +A L
Sbjct: 283 LCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 9e-05
Identities = 19/175 (10%), Positives = 40/175 (22%), Gaps = 30/175 (17%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS-KGPNKKILCQLSM 140
+ L + L P+ A + A +
Sbjct: 446 QRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIG 505
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
++++A V+ + +A L + + G
Sbjct: 506 GKQALAT--------VQRLLPVLCQAHGLTPDQVVAIASNGGG----------------K 541
Query: 201 QSLKAYQNAEK--DERMKSNPD---LYFNCATVNKYLENYERALSGFEASALKDP 250
Q+L+ Q + PD + + LE +R L +
Sbjct: 542 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 9e-05
Identities = 22/174 (12%), Positives = 43/174 (24%), Gaps = 29/174 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A G + A P++ +++
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIA 332
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ + V+ + +A L + + G Q
Sbjct: 333 SHDGGKQALET---VQRLLPVLCQAHGLTPDQVVAIASNGGG----------------KQ 373
Query: 202 SLKAYQNAEKD--ERMKSNPD---LYFNCATVNKYLENYERALSGFEASALKDP 250
+L+ Q + PD + LE +R L + P
Sbjct: 374 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTP 426
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 23/179 (12%), Positives = 44/179 (24%), Gaps = 30/179 (16%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+ L +A L P A G + A P++ +
Sbjct: 345 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ--------V 396
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ G + E V+ + +A L + + Q
Sbjct: 397 VAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG----------------KQ 440
Query: 202 SLKAYQNAEKDER--MKSNPD---LYFNCATVNKYLENYERALSGF-EASALKDPSLNA 254
+L+ Q P + + LE ++ L +A L + A
Sbjct: 441 ALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVA 499
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 22/186 (11%), Positives = 43/186 (23%), Gaps = 30/186 (16%)
Query: 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118
+P Q G + ++ L +A L A +
Sbjct: 561 TPDQVVAI-ASNGGGKQALETVQR-LLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRL 618
Query: 119 KNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178
A P ++ + G + E V+ + +A L +
Sbjct: 619 LPVLCQAHGLTPA-------QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 671
Query: 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER--MKSNPDL---YFNCATVNKYLE 233
+ G Q+L+ Q + + + LE
Sbjct: 672 SNGGG----------------KQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE 715
Query: 234 NYERAL 239
+R L
Sbjct: 716 TVQRLL 721
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 17/157 (10%), Positives = 45/157 (28%), Gaps = 20/157 (12%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSML 141
++ +++ + L ++ G A F + + L
Sbjct: 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
++M Q + +I +D+ + ++ L +L +
Sbjct: 65 RQAMGQY--------DLAIHSYSYGAVMDIXEPRFPFHAAECLL---------QXGELAE 107
Query: 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERA 238
+ A+ E + + P+ V+ LE +
Sbjct: 108 AESGLFLAQ--ELIANXPEFXELSTRVSSMLEAIKLK 142
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-05
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 12/103 (11%)
Query: 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFN 123
+ + G + +Y A S ++ C+ + G+L A++
Sbjct: 55 SRFFLGLGACRQAMGQY-DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 124 LALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166
LA N +L + + E+I+ KE
Sbjct: 114 LAQELIANXPEFXEL-----------STRVSSMLEAIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 1e-04
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 12/121 (9%)
Query: 45 ALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLC 104
+ +L + + + A +Y G +DA L+ + +L
Sbjct: 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXY--------EDAHXVFQALCVLDHYDSRFFLG 60
Query: 105 LGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAK 164
LG+C G A + ++ + + + E + A+
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGELAEAESGLFLAQ 116
Query: 165 E 165
E
Sbjct: 117 E 117
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 157 EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216
EE+ + D + + L + + + Q+ Y A K
Sbjct: 53 EEAEVFFRFLCIYDFYNVDYIMGLAAI----YQIKEQFQ-----QAADLYAVAFALG--K 101
Query: 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLL 265
++ F+ L+ +A FE + Q ++ +
Sbjct: 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-05
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121
Y I + ++ + A D + A L + G C + AK C
Sbjct: 68 YNVDYIMGLAAIYQIKEQF-QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC 126
Query: 122 FNLALSKGPNKKI 134
F L + ++K+
Sbjct: 127 FELVIQHSNDEKL 139
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 45 ALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLC 104
L+ + ++P + A Y KG+I ++AE + D +
Sbjct: 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRI--------EEAEVFFRFLCIYDFYNVDYIMG 75
Query: 105 LGSCIWKKGDLPAAKNCFNLALSKGPN 131
L + K A + + +A + G N
Sbjct: 76 LAAIYQIKEQFQQAADLYAVAFALGKN 102
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 21/205 (10%), Positives = 56/205 (27%), Gaps = 28/205 (13%)
Query: 82 KDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL 135
+ A+D + + + + A A+ G + +P A A
Sbjct: 53 EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112
Query: 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN------SWYNLGNACLTSFF 189
+M + E + +++ ++A + + +
Sbjct: 113 DTAAMALDRAGKLMEPLD--LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV---- 166
Query: 190 VTGSWDHSKLLQSLKAYQNA----EKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
K ++ + Q ++ E + V + +Y A
Sbjct: 167 -----RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR-E 220
Query: 246 ALKDPSLNATEEVQMMVNLLDKIEN 270
+ P + +E+ + +LL +
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQAYDE 245
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-05
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
+A + P +AW LG + A N A P
Sbjct: 35 EAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----DIAVHAA 90
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLD 170
+++ +E+ A ++ + +
Sbjct: 91 LAVSHTNEHNA---NAALASLRAWLLSQ 115
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 3e-04
Identities = 10/50 (20%), Positives = 14/50 (28%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
A L+ A L+P L + + AA L P
Sbjct: 68 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-05
Identities = 54/363 (14%), Positives = 100/363 (27%), Gaps = 119/363 (32%)
Query: 48 LLGSVPPEQRKSPTQRATYEYLKGKILDVVPEY------RKDAEDHLSKAV-KLNP---- 96
L+ + EQR+ Y + ++ + + R L +A+ +L P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 97 -----------SLA-DA---------------WLCLGSCIWKKGDLPAAKNCFNLALSKG 129
+A D WL L +C + L + L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLYQID 210
Query: 130 PNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----DVKDGNSW--YNLG-- 181
PN S ++ + + ++ L +V++ +W +NL
Sbjct: 211 PN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 182 ------NACLTSFFVTGSWDHSKLLQSLKAYQNAE-------------KD---------- 212
+T F + H L E +D
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 213 -------ERMKSNPD-----LYFNCATVNK-------YLENYE-----RALSGFEASALK 248
E ++ + NC + LE E LS F SA
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-H 386
Query: 249 DPS--L------NATEEVQMMVNLLDKIENLLKGHAKTKRVA----SLASSLAVVKLSSS 296
P+ L +V ++VN L K +L++ K ++ L + + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 297 HKR 299
H+
Sbjct: 446 HRS 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 9e-04
Identities = 55/367 (14%), Positives = 110/367 (29%), Gaps = 121/367 (32%)
Query: 11 RATKAADDLYHVKETFFPANPDDKV-SKLQNESDLALRL---LGSVPPEQRK-SP----- 60
R + D L T + + + +S L L +P E +P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 61 ------TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK-----LNP--------SLA-- 99
AT++ ++ D L+ ++ L P L+
Sbjct: 333 IAESIRDGLATWDN-----------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 100 --DAW-----LCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQ 152
A L L IW K+ + ++K L + S++E+ Q E+
Sbjct: 382 PPSAHIPTILLSL---IWFDVI----KSDVMVVVNK------LHKYSLVEK---QPKEST 425
Query: 153 AEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211
I + I L++K + Y L H ++ + +
Sbjct: 426 ISI------PS---IYLELKVKLENEYAL---------------HRSIVDHYNIPKTFDS 461
Query: 212 DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNL-LD---- 266
D+ + D YF + + +L+N E E + + + LD
Sbjct: 462 DDLIPPYLDQYF-YSHIGHHLKNIEHP-----------------ERMTLFRMVFLDFRFL 503
Query: 267 --KIENLLKGHAKTKRVASLASSLAVVKLSSSH---KRATVDLLSEGLNKAVAVVGKVLF 321
KI + A S+ ++L +K + + L + + + + L
Sbjct: 504 EQKIRH--DSTAWNAS-GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 322 FVKHENV 328
K+ ++
Sbjct: 561 CSKYTDL 567
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132
A + V+ +P + LG + A + + + +
Sbjct: 25 RALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 41/141 (29%)
Query: 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-------NKKILCQLSMLERSMA 146
+ + + G + G+ + + F A+ P K L LER
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKA--LYNLER--- 55
Query: 147 QGSENQAEIVEESIQHAKEAITL--DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204
EE++ I + D + + W +A L+ ++
Sbjct: 56 ---------YEEAVDCYNYVINVIEDEYNKDVWAAKADA----------------LRYIE 90
Query: 205 AYQNAEK--DERMKSNPDLYF 223
+ + + R K +
Sbjct: 91 GKEVEAEIAEARAKLEHHHHH 111
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127
YL+G + Y ++ D KA++L+P + WL G ++ A +C+N ++
Sbjct: 10 YLEGVLQYDAGNY-TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 128 KGPN 131
+
Sbjct: 69 VIED 72
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 38/254 (14%), Positives = 74/254 (29%), Gaps = 41/254 (16%)
Query: 17 DDLYHVKETFF---------------PANPDDKVSK--LQNESDLALRLLGSVPPEQRKS 59
D+L+ VK F+ P++P+ V + + LA R G V E + S
Sbjct: 1 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 60
Query: 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAW--LCLGSCIWKKGDLPA 117
+ + L R L + + + + + L S + + A
Sbjct: 61 SAPELQAVRMFAEYLAS-HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDA 119
Query: 118 AKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177
A + S + L L+R ++ + + K+ D +
Sbjct: 120 ALRTLHQGDSLECMAMTVQILLKLDR------------LDLARKELKKMQDQDEDATLTQ 167
Query: 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER 237
L + KL + +Q ++ L A + +E
Sbjct: 168 LATAWVSL-------AAGGEKLQDAYYIFQEMA--DKCSPTLLLLNGQAACHMAQGRWEA 218
Query: 238 ALSGFEASALKDPS 251
A + + KD
Sbjct: 219 AEGVLQEALDKDSG 232
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 14/107 (13%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+AE ++++ + LA A+ G ++ A AL + +++ +
Sbjct: 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113
Query: 142 ERSMAQGSE---NQAEI------VEESIQHAKEAITLDVKDGNSWYN 179
+ E N A + +++ + A ++ + +S +
Sbjct: 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 24/189 (12%)
Query: 79 EYRKDAEDHLSKAVKLN----PSLADAWLCLGSCIWKKGDLPAAKNCFNLALS---KGPN 131
+ R A++ +L+ + LG+ + GD A L+ +
Sbjct: 63 DCRA-GVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121
Query: 132 K----KILCQLSMLERSMAQGSE-----NQA-EIVEESIQHAKEAITLDVKDGNSWYNLG 181
+ K L + M + E + + + E L GN ++ G
Sbjct: 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY-NLGNVYHAKG 180
Query: 182 NACLTSFFVTGSWDHSKLL-QSLKAYQNA-EKDERMKSNPDL---YFNCATVNKYLENYE 236
D + L ++++ YQ + + N L +++
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240
Query: 237 RALSGFEAS 245
A+ +
Sbjct: 241 AAIEHHQER 249
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 44/200 (22%)
Query: 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKG 113
T A Y L G + +Y K A ++ + L A A LG+ + G
Sbjct: 40 KTLSAIYSQL-GNAYFYLHDYAK-ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97
Query: 114 DLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173
+ A C L +I E EA L
Sbjct: 98 NFDEAIVCCQRHL---------------------------DISRELNDKVGEARALY-NL 129
Query: 174 GNSWYNLGNACLTSFFVTGSWDHSKLL----QSLKAYQNA-EKDERMKSNPDL---YFNC 225
GN ++ G + + ++ Y+ + + N
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189
Query: 226 ATVNKYLENYERALSGFEAS 245
+ L N+ A+ E
Sbjct: 190 GNTHYLLGNFRDAVIAHEQR 209
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+A ++ KA++L+P+ A+AW LG+ +K+GD A + AL PN
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 100.0 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.96 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.94 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.91 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.86 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.86 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.85 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.85 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.83 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.82 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.82 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.82 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.82 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.81 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.81 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.81 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.8 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.78 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.78 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.78 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.77 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.74 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.73 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.73 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.72 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.72 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.71 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.7 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.64 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.62 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.62 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.62 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.6 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.6 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.58 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.58 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.57 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.55 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.55 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.53 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.52 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.5 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.46 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.46 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.41 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.4 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.38 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.33 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.28 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.23 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.18 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.17 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.13 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.09 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.0 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.91 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.76 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.76 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.35 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.29 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.28 | |
| 2xvs_A | 166 | Tetratricopeptide repeat protein 5; antitumor prot | 98.18 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.92 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.86 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.82 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.2 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.11 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.05 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.96 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.51 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.22 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.44 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.4 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.33 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.19 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.52 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.46 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.37 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.02 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.97 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.89 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.04 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.99 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.92 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.46 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.49 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.25 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 87.9 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 87.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 86.76 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.65 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.44 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.43 |
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=244.55 Aligned_cols=319 Identities=36% Similarity=0.591 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCccchh----hhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccH
Q 020060 6 EDIWARATKAADDLYHVKETFFPANPDDKVS----KLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYR 81 (331)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (331)
.+.+..+.+.++.++.+++.||..++..... ...+.+++++..++.... .++..+.+++.+|.++...|+|.
T Consensus 44 ~~~~~~l~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~----~~~~~a~~~~~lg~~~~~~g~~~ 119 (474)
T 4abn_A 44 KHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYS 119 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHT----TCCCCHHHHHHHHHHHTSSSSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHhccccH
Confidence 5667888899999999999999988877533 667778888888876554 45578899999999999999943
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhcc-CchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQ-GSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~~~~A~ 160 (331)
++|+.+|+++++++|+++.+|..+|.+|...|++++|+.+|+++++++|+..++..+|.++..++. ......+++++|+
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 889999999999999999999999999999999999999999999999998889999999998711 1111234799999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC---CChhHHhhHHHHHHHhhcHHH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK---SNPDLYFNCATVNKYLENYER 237 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~ 237 (331)
..++++++++|+++.+|+.+|.+|...++..+. ..|++++|+..|+++++.. | .++.+|+++|.++..+|++++
T Consensus 200 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 200 RQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ-NPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999987666654 6689999999999999955 8 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHhhccccccC--------------CCcccc
Q 020060 238 ALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA--KTKRVASLASSLAVVKLS--------------SSHKRA 300 (331)
Q Consensus 238 A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~--~a~~l~~~~~~~~~~~~~--------------~~~~~~ 300 (331)
|+.+|++++.++|++... ..++.++..++++++|++.+. +..++..++..+....+. ......
T Consensus 277 A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~~~l~~~~~~l~~~~~g~~~~~~~~~~~g~~~~l~~~ 356 (474)
T 4abn_A 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELK 356 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCCSGGGCC-----CBCC--CBCCCEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHhchhccCCccccchhccCCCCcceeeec
Confidence 999999999999999998 999999999999999996554 455667788887766541 123445
Q ss_pred ccchhhccCCcCceEEeEEeEeeecCCCCCC
Q 020060 301 TVDLLSEGLNKAVAVVGKVLFFVKHENVTPL 331 (331)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (331)
.+..+.++.|.+..+++++++.+.++..+|+
T Consensus 357 ~l~~l~~~~~~~~~~~~kv~~~~~~~~~~p~ 387 (474)
T 4abn_A 357 PLSTLQPGVNSGTVVLGKVVFSLTTEEKVPF 387 (474)
T ss_dssp CGGGCCSEECTTEEEEEEEEEEECCTTCCSE
T ss_pred cHhhcccccCCCeEEEEEEEEEecCCCCCce
Confidence 7778999999999999999999999988884
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=198.24 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=174.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..++.+|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++ .++..+|.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRY-DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4466889999999999998 999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHhccCch---hHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 141 LERSMAQGSE---NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 141 ~~~~~g~~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
++...+.... ...|++++|+..++++++++|+++.+|..+|.++... |++++|+..|+++++. . +
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~--~-~ 149 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL---------GERDKAEASLKQALAL--E-D 149 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH--C-C
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhc--c-c
Confidence 9997700000 0003699999999999999999999999999999999 9999999999999994 4 8
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
++.+++++|.++..+|++++|+..|++++.++|++... ..++.++..+|++++|+..+.++.
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999998 999999999999999998888765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=179.91 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=163.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
+.+.+|+.+|.++...|+| ++|+.+|+++++++|+++.++..+|.+|...|++++|+..+.+++...|+. .++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDF-DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4567899999999999998 999999999999999999999999999999999999999999999999998 88899999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...+ +++.|...+.+++..+|+++.++..+|.++... |++++|+..|+++++.+ |.++.
T Consensus 82 ~~~~~~--------~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~l~~~--p~~~~ 142 (184)
T 3vtx_A 82 ANFMID--------EKQAAIDALQRAIALNTVYADAYYKLGLVYDSM---------GEHDKAIEAYEKTISIK--PGFIR 142 (184)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh---------CCchhHHHHHHHHHHhc--chhhh
Confidence 999886 499999999999999999999999999999999 99999999999999955 99999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+++++|.++..+|++++|+.+|+++++++|++.
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999999999999999999754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=198.08 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=179.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+..+.+++.+|.++...|++ ++|+.+|++++.++|+++.++..+|.+|...|++++|+
T Consensus 79 g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 79 GDLPVTILFMEAAIL----QDPGDAEAWQFLGITQAENENE-QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHH
Confidence 445555555555442 1234466777777777777776 77777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCh-HHHhh----------HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHh
Q 020060 120 NCFNLALSKGPNK-KILCQ----------LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLT 186 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~----------l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 186 (331)
.+|++++++.|++ ..+.. +|.++... +++++|+.+++++++.+|. ++.++..+|.++..
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--------SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CC--------HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 7777777777765 33333 35566655 4699999999999999999 89999999999999
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH
Q 020060 187 SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL 265 (331)
Q Consensus 187 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l 265 (331)
. |++++|+..|+++++.. |.++.+|.++|.++...|++++|+.+|++++.++|++... ..++.++..+
T Consensus 226 ~---------g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 226 S---------GEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp H---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred C---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 9 99999999999999955 9999999999999999999999999999999999999888 9999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHH
Q 020060 266 DKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 266 ~~~~~a~~~~~~a~~l~~~~ 285 (331)
|++++|+..+.++.++.+..
T Consensus 295 g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 99999999999999988653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=196.65 Aligned_cols=219 Identities=9% Similarity=0.031 Sum_probs=182.2
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccc-cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPE-YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
+++|+..+..+.. ..+....+|+.+|.++...|+ + ++|+.+|++++.++|++..+|+++|.++...|++++|+.
T Consensus 113 ~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g~d~-~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 113 SERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDL-HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp CHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 4455555554442 234567788999999999996 8 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
+|+++++++|++ .+|+++|.++..+| ++++|+.+++++++++|++..+|+++|.++..+ + |.+
T Consensus 188 ~~~kal~ldP~~~~a~~~lg~~~~~~g--------~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l----~----~~~ 251 (382)
T 2h6f_A 188 FIADILNQDAKNYHAWQHRQWVIQEFK--------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT----T----GYN 251 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT--------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----T----CSC
T ss_pred HHHHHHHhCccCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----c----Ccc
Confidence 999999999998 89999999999887 489999999999999999999999999999883 0 443
Q ss_pred HHH-----HHHHHHHHhchhcCCChhHHhhHHHHHHHhh--cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH-----
Q 020060 200 LQS-----LKAYQNAEKDERMKSNPDLYFNCATVNKYLE--NYERALSGFEASALKDPSLNAT-EEVQMMVNLLD----- 266 (331)
Q Consensus 200 ~~A-----~~~~~~al~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~----- 266 (331)
++| +.+|++++..+ |++..+|+++|.++...| ++++|+..+.++ ..+|++... ..++.++..++
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 68899999855 999999999999999887 689999999887 888888887 88999988875
Q ss_pred ----HHHHHHHhhhhh-hhHHHH
Q 020060 267 ----KIENLLKGHAKT-KRVASL 284 (331)
Q Consensus 267 ----~~~~a~~~~~~a-~~l~~~ 284 (331)
.+++|++.+.++ .++++.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHHHHHHHhCch
Confidence 357888888887 665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=194.84 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=129.7
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
...++..+|.++...|++ ++|+.+|++++.++|+++.++..+|.++...|++++|+..|++++.++|++ .++..+|.+
T Consensus 168 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEI-WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 344555666666666665 666666666666666666666666666666666666666666666666655 555666666
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+...| ++++|+..++++++.+|+++.+|..+|.++... |++++|+..|+++++.. |.++.+
T Consensus 247 ~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~ 307 (388)
T 1w3b_A 247 YYEQG--------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEK---------GSVAEAEDCYNTALRLC--PTHADS 307 (388)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH---------SCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHcC--------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--cccHHH
Confidence 66554 366666677666666666666666666666666 66677777777666643 666666
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
+.++|.++...|++++|+..|++++..+|++... ..++.++...|++++|+..+.++.++
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6667777766677777777777776666666665 66666666666666666666666543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=195.66 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=181.8
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hhHHHHHHHHHHhcCCCh-HHHh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD-LPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
..+....++..+|.++...|++ ++|+.+|++++.++|++..+|+.+|.++...|+ +++|+.+|+++++++|++ .+|+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~-~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3456788899999999999998 999999999999999999999999999999997 999999999999999999 9999
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
++|.++..+| ++++|+.+|+++++++|++..+|+++|.++..+ |++++|+.+|+++++.+ |
T Consensus 171 ~~g~~~~~~g--------~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~---------g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 171 HRRVLVEWLR--------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEF---------KLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp HHHHHHHHHT--------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCCTTHHHHHHHHHHHC--T
T ss_pred HHHHHHHHcc--------CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhC--C
Confidence 9999999887 499999999999999999999999999999999 99999999999999965 9
Q ss_pred CChhHHhhHHHHHHH-hhcHHHH-----HHHHHHHHhcCCCCcHH-HHHHHHHHHHH--HHHHHHHhhhh
Q 020060 217 SNPDLYFNCATVNKY-LENYERA-----LSGFEASALKDPSLNAT-EEVQMMVNLLD--KIENLLKGHAK 277 (331)
Q Consensus 217 ~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~-~~l~~~~~~l~--~~~~a~~~~~~ 277 (331)
.++.+|+++|.++.. .|.+++| +.+|++++.++|++..+ ..++.++...| ++.++++.+.+
T Consensus 232 ~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 999999999999999 5554788 59999999999999988 88888887766 46666654443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=185.94 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccc-ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVP-EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
++.++|+..+..... ..+....+++.+|.++...| ++ ++|+.+|++++..+|.++.+|..+|.++...|++++|
T Consensus 70 ~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 70 NKANELFYLSHKLVD----LYPSNPVSWFAVGCYYLMVGHKN-EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp TCHHHHHHHHHHHHH----HCTTSTHHHHHHHHHHHHSCSCH-HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHH
T ss_pred hhHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHH
Confidence 344555555554432 22355678999999999999 87 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|+++++..|.+ ..+..+|.++...| ++++|+..++++++.+|+++.++..+|.++... |
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---------~ 207 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTN--------NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN---------G 207 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT---------T
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------c
Confidence 99999999999998 88888999999887 499999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhc-------CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERM-------KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~ 269 (331)
++++|+..+++++..... |..+.++.++|.++...|++++|+.+|++++.++|++... ..++.++..+|+++
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 999999999999984211 5667889999999999999999999999999999999988 99999999999999
Q ss_pred HHHHhhhhhhhHHH
Q 020060 270 NLLKGHAKTKRVAS 283 (331)
Q Consensus 270 ~a~~~~~~a~~l~~ 283 (331)
+|+..+.++.++.+
T Consensus 288 ~A~~~~~~al~~~p 301 (330)
T 3hym_B 288 NAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHccCC
Confidence 99999999887643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-24 Score=185.21 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=183.4
Q ss_pred HHHHHHHH-HhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 40 NESDLALR-LLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~-~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
+.+++++. .+..........+......++.+|.++...|++ ++|+.+|+++++.+|.++.++..+|.++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555665 555443322223333455677778788888886 7788888888888887777888888888888888888
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh-----------------------------------------HHHHH
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN-----------------------------------------QAEIV 156 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~-----------------------------------------~~~~~ 156 (331)
+.+|+++++++|++ .++..+|.++...|+.... ..+++
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 88888888777777 6777777777766542110 23568
Q ss_pred HHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 157 EESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 157 ~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
++|+..++++++.+|. ++.++..+|.++... |++++|+..|++++... |.++.++.++|.++...|+
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---------GEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888 788999999999998 99999999999999955 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 235 YERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
+++|+.+|++++.++|++... ..++.++..+|++++|+..+.++.++.+..
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999888 999999999999999999999999887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=190.53 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=184.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.+......++.+|..+...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++++|++ .++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 138 (365)
T 4eqf_A 60 NPFKDWPGAFEEGLKRLKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138 (365)
T ss_dssp CTTTTCTTHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccchhHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4445667789999999999998 999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH----------HHHHHhhhhhcCCCChhhHHHHHHHHH
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL----------GNACLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
+|.++...| ++++|+.+++++++..|+++..+..+ |.++... |++++|+..|+
T Consensus 139 l~~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~ 201 (365)
T 4eqf_A 139 LAVSYTNTS--------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS---------SVLEGVKELYL 201 (365)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHCHHHHCC-------------------CC---------HHHHHHHHHHH
T ss_pred HHHHHHccc--------cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh---------hhHHHHHHHHH
Confidence 999999887 49999999999999999887777665 8888877 99999999999
Q ss_pred HHHhchhcCC--ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 208 NAEKDERMKS--NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 208 ~al~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+++... |. ++.++.++|.++...|++++|+.+|++++..+|++... ..++.++...|++++|+..+.++.++.+
T Consensus 202 ~al~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 202 EAAHQN--GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHS--CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhC--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999955 88 89999999999999999999999999999999999988 9999999999999999999999987644
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-25 Score=193.07 Aligned_cols=195 Identities=18% Similarity=0.152 Sum_probs=100.9
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+..+|.++...|++ ++|+..|+++++.+|+...++..+|.++...|++++|+.+|+++++..|++ .++..+|.++...
T Consensus 104 ~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 104 YINLAAALVAAGDM-EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHHHHHHHSCS-SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33333333333333 333333333333333333333333333333444444444444444444433 3334444444433
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
| ++++|+..|+++++.+|+++.++..+|.++... |++++|+..|++++... |+++.++.++
T Consensus 183 g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~l 243 (388)
T 1w3b_A 183 G--------EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA---------RIFDRAVAAYLRALSLS--PNHAVVHGNL 243 (388)
T ss_dssp T--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---------TCTTHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred C--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--cCCHHHHHHH
Confidence 3 255555555555555555555555555555544 55555555555555533 6666666666
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
|.++...|++++|+..|++++..+|+++.. ..++.++...|++++|+..+.++.++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666666666666666666666665 66666666666666666666666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-24 Score=175.39 Aligned_cols=204 Identities=16% Similarity=0.192 Sum_probs=186.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--------H
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~ 133 (331)
..+..++.+|.++...|+| ++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++++.|+. .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 5678899999999999998 99999999999999 889999999999999999999999999999988754 6
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc--------------------------CCCCCchhHHHHHHHHHhh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT--------------------------LDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~ 187 (331)
++..+|.++...|+ +++|+.++++++. .+|.++.++..+|.++...
T Consensus 81 ~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGD--------LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccc--------HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 78889999998874 6666666666666 8888899999999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
|++++|+..|++++... |.++.++.++|.++...|++++|+.+|++++..+|++... ..++.++..+|
T Consensus 153 ---------~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 153 ---------SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp ---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ---------cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999955 9999999999999999999999999999999999999988 99999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHh
Q 020060 267 KIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 267 ~~~~a~~~~~~a~~l~~~~~ 286 (331)
++++|+..+.++.++.+...
T Consensus 222 ~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 222 EYASALETLDAARTKDAEVN 241 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhChhhc
Confidence 99999999999999885543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=173.44 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=158.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP-SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
+..++.+|.++...|+| ++|+.+|++++.++| .+..+++.+|.++...|++++|+.+|+++++.+|++ .++..+|.+
T Consensus 7 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 47899999999999998 999999999999999 899999999999999999999999999999999999 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-------hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDG-------NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
+..+| ++++|+..++++++.+|+++ .+|..+|.++... |++++|+..|+++++..
T Consensus 86 ~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~- 147 (228)
T 4i17_A 86 YRDMK--------NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA---------GNIEKAEENYKHATDVT- 147 (228)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTTSS-
T ss_pred HHHcc--------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh---------ccHHHHHHHHHHHHhcC-
Confidence 99887 49999999999999999998 6699999999988 99999999999999965
Q ss_pred cCC--ChhHHhhHHHHHHHhhcH---------------------------HHHHHHHHHHHhcCCCCcHH
Q 020060 215 MKS--NPDLYFNCATVNKYLENY---------------------------ERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 215 ~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~ 255 (331)
|. ++.+++++|.++...|+. ++|+.+|+++++++|++...
T Consensus 148 -p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 148 -SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 99 899999999999998887 77777777777777777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=175.63 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=152.4
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--------
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-------- 112 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------- 112 (331)
++++|+..++.... ..+..+.+++.+|.++...|++ ++|+..|+++++++|+++.++..+|.++...
T Consensus 20 ~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 20 RYDAALTLFERALK----ENPQDPEALYWLARTQLKLGLV-NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp CHHHHHHHHHHHHT----TSSSCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 34566666665443 3346678899999999999997 9999999999999999999999999999999
Q ss_pred ---CChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 113 ---GDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 113 ---g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
|++++|+..|+++++++|++ .++..+|.++..+| ++++|+..|+++++++ +++.++..+|.++...
T Consensus 95 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~- 164 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG--------ERDKAEASLKQALALE-DTPEIRSALAELYLSM- 164 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-
Confidence 99999999999999999999 89999999999887 4999999999999999 9999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
|++++|+..|+++++.. |+++.++.++|.++..+|++++|+.+|+++-
T Consensus 165 --------g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 165 --------GRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp --------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred --------CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999955 9999999999999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=202.88 Aligned_cols=173 Identities=18% Similarity=0.166 Sum_probs=164.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..|..+.+++++|.++...|++ ++|+.+|+++++++|+++.++.++|.+|...|++++|+.+|+++++++|++ .++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~-~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4567889999999999999998 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++..+| ++++|+++|+++++++|+++.+|+++|.+|... |++++|+..|+++++.+ |+
T Consensus 83 Lg~~l~~~g--------~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~--P~ 143 (723)
T 4gyw_A 83 MGNTLKEMQ--------DVQGALQCYTRAIQINPAFADAHSNLASIHKDS---------GNIPEAIASYRTALKLK--PD 143 (723)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--SC
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CC
Confidence 999999887 499999999999999999999999999999999 99999999999999965 99
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
++.++.++|.++..+|++++|...|++++++.|+
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999999999987554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=172.35 Aligned_cols=204 Identities=17% Similarity=0.111 Sum_probs=191.3
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
++...+.+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++..|.+ .++..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNT-EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 4455589999999999999998 999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhc--CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAIT--LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
+|.++...| ++++|+.++++++. ..|.++.++..+|.++... |++++|+..+++++...
T Consensus 111 la~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~-- 171 (252)
T 2ho1_A 111 YGGFLYEQK--------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM---------KKPAQAKEYFEKSLRLN-- 171 (252)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHh--------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcC--
Confidence 999999887 49999999999999 8888899999999999999 99999999999999955
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
|.++.++..+|.++...|++++|..+|++++...|++... ..++.++...|++++|...+.++.++.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999887 889999999999999999988887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=175.21 Aligned_cols=204 Identities=15% Similarity=0.141 Sum_probs=171.7
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
+...+..++.+|..+...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++..|.+ .++..+
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDY-EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 345677889999999999998 999999999999999999999999999999999999999999999999988 889999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
|.++...| ++++|+..++++++..|.++.++..+|.++... |++++|+..+++++... |.+
T Consensus 98 a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~ 158 (243)
T 2q7f_A 98 GNVYVVKE--------MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL---------EQPKLALPYLQRAVELN--END 158 (243)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT---------SCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHhc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhC--Ccc
Confidence 99999887 499999999999999999999999999999999 99999999999999955 999
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.++..+|.++...|++++|+.+|++++..+|++... ..++.++...|++++|+..+.++.++.+
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999888 9999999999999999999999887644
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=164.68 Aligned_cols=170 Identities=17% Similarity=0.265 Sum_probs=161.8
Q ss_pred CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 97 SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
+++.+|+++|.+|...|++++|+.+|+++++++|++ .++..+|.++..+| ++++|+..+.+++...|+++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--------LPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCchhHH
Confidence 467899999999999999999999999999999999 99999999999887 499999999999999999999
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
++..+|.++... ++++.|+..+.+++... |.++.++..+|.++..+|++++|+.+|+++++++|++...
T Consensus 75 ~~~~~~~~~~~~---------~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 143 (184)
T 3vtx_A 75 AYYILGSANFMI---------DEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRA 143 (184)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhH
Confidence 999999999998 99999999999999955 9999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
..+|.++..+|++++|++.|.+|.+++|..
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999887653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=180.88 Aligned_cols=220 Identities=12% Similarity=0.028 Sum_probs=194.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A 118 (331)
+++++|+..+..+.. ..+.....+..++.++...|++ ++|+..+.+++..+|+++.++..+|.++...| ++++|
T Consensus 36 g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 110 (330)
T 3hym_B 36 CDFKMCYKLTSVVME----KDPFHASCLPVHIGTLVELNKA-NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110 (330)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCTTTHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHH
T ss_pred CCHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHHhhhH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHH
Confidence 344555555554432 2234455677788899999997 99999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|+++++.+|.+ .++..+|.++...| ++++|+..++++++..|++..++..+|.++... |
T Consensus 111 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---------~ 173 (330)
T 3hym_B 111 RRYLSKATTLEKTYGPAWIAYGHSFAVES--------EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT---------N 173 (330)
T ss_dssp HHHHHHHHTTCTTCTHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT---------T
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH---------h
Confidence 99999999999998 88999999999887 499999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC---------CCCcHH-HHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD---------PSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~-~~l~~~~~~l~~ 267 (331)
++++|+..+++++... |.++.++..+|.++...|++++|+.+|++++... |..... ..++.++...|+
T Consensus 174 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999955 9999999999999999999999999999999986 555566 999999999999
Q ss_pred HHHHHHhhhhhhhHHH
Q 020060 268 IENLLKGHAKTKRVAS 283 (331)
Q Consensus 268 ~~~a~~~~~~a~~l~~ 283 (331)
+++|+..+.++.++.+
T Consensus 252 ~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 252 YAEALDYHRQALVLIP 267 (330)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhCc
Confidence 9999999999887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=165.59 Aligned_cols=203 Identities=13% Similarity=0.033 Sum_probs=184.3
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.++..+.+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ .++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDY-RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 3457788999999999999998 999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHh-ccCchhHHHHHHHHHHHHHHHhc--CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 138 LSMLERSM-AQGSENQAEIVEESIQHAKEAIT--LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 138 l~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
+|.++... |+ +++|+.+++++++ ..|.++.++..+|.++... |++++|+..++++++..
T Consensus 82 l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~- 143 (225)
T 2vq2_A 82 YGWFLCGRLNR--------PAESMAYFDKALADPTYPTPYIANLNKGICSAKQ---------GQFGLAEAYLKRSLAAQ- 143 (225)
T ss_dssp HHHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC-
Confidence 99999988 84 9999999999999 6677788999999999999 99999999999999955
Q ss_pred cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC-CCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 215 MKSNPDLYFNCATVNKYLENYERALSGFEASALKDP-SLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
|.++.++..+|.++...|++++|..+|++++...| .+... ..++.++...|+.+++...+..+.+.
T Consensus 144 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 144 -PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 88777 77777778888888777666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=180.02 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+....+++.+|.++...|++ ++|+.+|++++.++|+++.++..+|.++...|++++|+
T Consensus 78 g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp TCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455667766666543 2345677899999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh----------------------------------------------------HHHhhHHHHHHHhcc
Q 020060 120 NCFNLALSKGPNK----------------------------------------------------KILCQLSMLERSMAQ 147 (331)
Q Consensus 120 ~~~~~al~~~~~~----------------------------------------------------~~~~~l~~~~~~~g~ 147 (331)
.+|++++...|.+ .++..+|.++...|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g- 231 (368)
T 1fch_A 153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG- 231 (368)
T ss_dssp HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-
Confidence 9888888776643 44566777777666
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
++++|+.++++++..+|+++.++..+|.++... |++++|+..|++++... |.++.++.++|.
T Consensus 232 -------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~--~~~~~~~~~l~~ 293 (368)
T 1fch_A 232 -------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANG---------NQSEEAVAAYRRALELQ--PGYIRSRYNLGI 293 (368)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 599999999999999999999999999999999 99999999999999955 999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCC-----------cHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 228 VNKYLENYERALSGFEASALKDPSL-----------NAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++..+|++++|..+|++++.+.|++ ... ..++.++..+|++++|...+.++.....
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 9999999999999999999999987 556 8999999999999999988887776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=176.53 Aligned_cols=201 Identities=12% Similarity=0.029 Sum_probs=188.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+..++.+|..+...|+| ++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++..|++ .++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 356789999999999998 999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCC---CCchhHHHH------------HHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDV---KDGNSWYNL------------GNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
+...| ++++|+..++++++.+| +++.++..+ |.++... |++++|+..+
T Consensus 81 ~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~ 143 (359)
T 3ieg_A 81 LLKQG--------KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG---------ADYTAAITFL 143 (359)
T ss_dssp HHHHT--------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHH
T ss_pred HHHcC--------ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc---------cCHHHHHHHH
Confidence 99887 49999999999999999 888888887 6778877 9999999999
Q ss_pred HHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 207 QNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 207 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++++... |.++.++..+|.++...|++++|+..|++++..+|++... ..++.++...|++++|+..+.++.++.+
T Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 144 DKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 9999955 9999999999999999999999999999999999999998 9999999999999999999998886643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-23 Score=178.21 Aligned_cols=217 Identities=16% Similarity=0.136 Sum_probs=190.1
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
+++|+..+..... ..+....+++.+|.++...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+
T Consensus 19 ~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 19 LADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKS-KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp HHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHh----hCcccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence 3444544444332 2234567899999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC---Ch-HHHhhH------------HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 122 FNLALSKGP---NK-KILCQL------------SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 122 ~~~al~~~~---~~-~~~~~l------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
|+++++..| ++ .++..+ |.++...| ++++|+.+++++++.+|.++.++..+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--------DYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999 66 666655 67777776 5999999999999999999999999999999
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-H--------
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-E-------- 256 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~-------- 256 (331)
.. |++++|+..+++++... |.++.++..+|.++...|++++|..+|++++..+|++... .
T Consensus 166 ~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 166 KE---------GEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HT---------TCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 99 99999999999999955 9999999999999999999999999999999999998875 3
Q ss_pred ----HHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 257 ----EVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 257 ----~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.++.++...|++++|+..+.++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 33777888999999998888887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=178.22 Aligned_cols=221 Identities=12% Similarity=0.002 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..++.... ..+....++..+|.++...|++ ++|+.++++++..+|.++.++..+|.++...|++++|+
T Consensus 35 ~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~ 109 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQ----AAPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL 109 (327)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345566666655442 2234567888999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhH--------------HH-HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 020060 120 NCFNLALSKGPNK-KILCQL--------------SM-LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l--------------~~-~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 183 (331)
.+|+++++..|.. ..+..+ +. ++... +++++|+.+++++++..|.++.++..+|.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 110 ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP--------NEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHTSTTTTTC--------------------CCTTSH--------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc--------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 9999999999988 444444 33 34433 579999999999999999999999999999
Q ss_pred HHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 184 CLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
+... |++++|+..+++++... |.++.++..+|.++...|++++|+.+|++++..+|++... ..++.++
T Consensus 182 ~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 182 YNLS---------NNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHh---------ccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999 99999999999999955 9999999999999999999999999999999999999888 9999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHH
Q 020060 263 NLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 263 ~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..+|++++|++.+.++.++.+.
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHhCCc
Confidence 9999999999999999887655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=168.73 Aligned_cols=200 Identities=12% Similarity=0.025 Sum_probs=171.0
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K 133 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~ 133 (331)
+..+..++.+|..++..|+| ++|+..|++++...|++ +.+++.+|.+|...|++++|+..|+++++..|++ .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKY-DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCH-HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45678899999999999998 99999999999999998 8999999999999999999999999999998865 6
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhhhcCCCCh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~~~ 196 (331)
+++.+|.++...+.......+++++|+..|+++++.+|+++.++ +.+|.+|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~--------- 161 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR--------- 161 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 88999999997111000012479999999999999999998777 8889999999
Q ss_pred hhHHHHHHHHHHHHhchhcCC---ChhHHhhHHHHHHHh----------hcHHHHHHHHHHHHhcCCCCcHH----HHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKS---NPDLYFNCATVNKYL----------ENYERALSGFEASALKDPSLNAT----EEVQ 259 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~----~~l~ 259 (331)
|++++|+..|+++++.. |+ .+.+++.+|.++..+ |++++|+..|++++..+|+++.. ..++
T Consensus 162 g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp TCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999854 77 456899999999987 99999999999999999999753 5556
Q ss_pred HHHHHHHHHHHHH
Q 020060 260 MMVNLLDKIENLL 272 (331)
Q Consensus 260 ~~~~~l~~~~~a~ 272 (331)
.+...+++++.+.
T Consensus 240 ~~~~~~~~~~~~~ 252 (261)
T 3qky_A 240 RARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHhhhhh
Confidence 6666666665443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=197.43 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=165.0
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
..|++++++.++|.+|..+|++++|+.+|+++++++|++ .++.++|.++..+| ++++|+.+|+++++++|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--------~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--------KLQEALMHYKEAIRISPT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999999999 99999999999887 499999999999999999
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
++.+|+++|.++..+ |++++|+..|+++++.+ |+++.+++++|.++..+|++++|+.+|+++++++|++
T Consensus 76 ~~~a~~nLg~~l~~~---------g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 76 FADAYSNMGNTLKEM---------QDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp CHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 99999999999999965 9999999999999999999999999999999999999
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 253 NAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
..+ .+++.++..++++++|.+.+.++.++.+..
T Consensus 145 ~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 145 PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 998 999999999999999999999999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=170.56 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=176.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSM 140 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~ 140 (331)
..++..|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++..++. .++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNY-AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 4577889999999998 999999999999999999999999999999999999999999999943222 35889999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++++|+.+++++++.+|.++.+|..+|.++... |++++|+.+|++++... |.++.
T Consensus 83 ~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~--~~~~~ 143 (272)
T 3u4t_A 83 ILMKKG--------QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK---------GNFPLAIQYMEKQIRPT--TTDPK 143 (272)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---------TCHHHHHHHHGGGCCSS--CCCHH
T ss_pred HHHHcc--------cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------cCHHHHHHHHHHHhhcC--CCcHH
Confidence 999887 499999999999999999999999999999999 99999999999999965 99999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH---HHHHHHhhhhhhhHH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK---IENLLKGHAKTKRVA 282 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~---~~~a~~~~~~a~~l~ 282 (331)
+++++|...+..+++++|+.+|+++++++|++... ..++.++..+++ +++|+..+.++.++.
T Consensus 144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 99999955555669999999999999999999887 889999999988 777888888888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=162.51 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=150.0
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHhCChhHHHHHHHHHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLC----------------LGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
+..++..|..+...|+| ++|+.+|++++..+|+++.+++. +|.+|...|++++|+.+|+++++
T Consensus 4 ~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQN-GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999998 99999999999999999999999 99999999999999999999999
Q ss_pred cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 128 KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 128 ~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
++|++ .++..+|.++...| ++++|+.+|+++++++|+++.+|+.+|.+|... ..+....+...+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-------~~~~~~~~~~~~ 147 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRG--------QEKDALRMYEKILQLEADNLAANIFLGNYYYLT-------AEQEKKKLETDY 147 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------hHHHHHHHHHHH
Confidence 99999 99999999999887 499999999999999999999999999999876 113456677788
Q ss_pred HHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 207 QNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 207 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
.+++.. +....+++++|.++..+|++++|+.+|+++++++|+..
T Consensus 148 ~~~~~~---~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 148 KKLSSP---TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp C---CC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhCC---CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 777641 12234688899999999999999999999999999854
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=182.59 Aligned_cols=218 Identities=14% Similarity=0.129 Sum_probs=190.1
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
+++|+..+..+.. ..+....+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+
T Consensus 42 ~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 42 LADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKS-KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555554432 1234578899999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh----HHHhh------------HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 122 FNLALSKGPNK----KILCQ------------LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 122 ~~~al~~~~~~----~~~~~------------l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
|+++++.+|++ .++.. +|.++...| ++++|+..++++++..|.++.++..+|.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG--------DYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999986 23333 356677665 5999999999999999999999999999999
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHH------
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEV------ 258 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l------ 258 (331)
.. |++++|+..|+++++.. |.++.++..+|.++...|++++|+.+|++++..+|++... ..+
T Consensus 189 ~~---------g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 189 KE---------GEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HT---------TCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99 99999999999999955 9999999999999999999999999999999999998876 544
Q ss_pred ------HHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 259 ------QMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 259 ------~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.++...|++++|+..+.++..+.+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 8889999999999999988876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-23 Score=168.35 Aligned_cols=200 Identities=18% Similarity=0.238 Sum_probs=174.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+....+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+
T Consensus 37 ~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIE----ENKEDAIPYINFANLLSSVNEL-ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp -----CCTTHHHHHT----TCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 344444444444332 2234577899999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+|+++++..|.+ .++..+|.++...| ++++|+..++++++..|.++.++..+|.++... |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~ 174 (243)
T 2q7f_A 112 DMFEKALRAGMENGDLFYMLGTVLVKLE--------QPKLALPYLQRAVELNENDTEARFQFGMCLANE---------GM 174 (243)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHTS--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc---------CC
Confidence 9999999999988 88999999999887 499999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVN 263 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~ 263 (331)
+++|+..+++++... |.++.++..+|.++...|++++|..+|++++.++|++... ..++.+..
T Consensus 175 ~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 999999999999955 9999999999999999999999999999999999999876 55554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-21 Score=160.33 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=164.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
.++++|+..+..+.......++..+.+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 44455555554443221124567889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+|+++++++|.+ .++..+|.++..+| ++++|+.+++++++.+|+++.....++.+ ... |+
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~---------~~ 159 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGG--------RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK---------LD 159 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------HC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------cC
Confidence 9999999999988 89999999999887 49999999999999999888665555443 444 77
Q ss_pred HHHHHHHHHHHHhchhcCCC-------------------------------------hhHHhhHHHHHHHhhcHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSN-------------------------------------PDLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~-------------------------------------~~~~~~la~~~~~~g~~~~A~~~ 241 (331)
+++|+..+.+++... |.+ +.++..+|.++...|++++|..+
T Consensus 160 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHHHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776666522 222 45677788888888888888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 020060 242 FEASALKDPSLNATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 242 ~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
|++++..+|++... .+.++..++++.+|++.+
T Consensus 238 ~~~al~~~p~~~~~--~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 238 FKLAVANNVHNFVE--HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCCTTCHH--HHHHHHHHHHHHHC----
T ss_pred HHHHHhCCchhHHH--HHHHHHHHHHHHhhHHHH
Confidence 88888887766432 355667777777777665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=173.17 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=177.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
....+++.+|.++...|++ ++|+.++++++. .|.+ ..++..+|.++...|++++|+.+|+++++.+|.+ .++.
T Consensus 35 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 112 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELAKY-DLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG 112 (272)
T ss_dssp CCSTTHHHHHHHHHHTTCH-HHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CcHHHHHHHHHHHHHHhhH-HHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence 3455788999999999998 999999999999 4433 5569999999999999999999999999999998 8999
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
.+|.++...| ++++|+.+++++++.+|.++.+|..+|...... +++++|+..|+++++.. |
T Consensus 113 ~l~~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~--p 173 (272)
T 3u4t_A 113 QIGSYFYNKG--------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN---------KEYVKADSSFVKVLELK--P 173 (272)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--T
T ss_pred HHHHHHHHcc--------CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhC--c
Confidence 9999999887 499999999999999999999999999444445 79999999999999955 9
Q ss_pred CChhHHhhHHHHHHHhhc---HHHHHHHHHHHHhcC---CCCc-----HH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 217 SNPDLYFNCATVNKYLEN---YERALSGFEASALKD---PSLN-----AT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---~~~~-----~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++.++..+|.++..+|+ +++|+..|++++.+. |+.. .. ..+|.++...|++++|+..+.++.++.|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 999999999999986 4421 23 77899999999999999999999887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-22 Score=179.15 Aligned_cols=204 Identities=13% Similarity=0.027 Sum_probs=189.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..++.+|..+...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++.+|++ .++..
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4457788999999999999998 999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc---hhHHHH------------HHHHHhhhhhcCCCChhhHHHH
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG---NSWYNL------------GNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------~~~~~~~~~~~~~~~~~~~~~A 202 (331)
+|.++..+| ++++|+.+|+++++.+|+++ .++..+ |.++... |++++|
T Consensus 100 l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~A 162 (450)
T 2y4t_A 100 RGHLLLKQG--------KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS---------GDYTAA 162 (450)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHH
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHH
Confidence 999999887 49999999999999999988 777666 5557777 999999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
+..|++++... |.++.++..+|.++...|++++|+.+|++++..+|++... ..++.++...|++++|+..+.++..+
T Consensus 163 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999955 9999999999999999999999999999999999999888 99999999999999999999988766
Q ss_pred H
Q 020060 282 A 282 (331)
Q Consensus 282 ~ 282 (331)
.
T Consensus 241 ~ 241 (450)
T 2y4t_A 241 D 241 (450)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=186.51 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=188.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
....++..+|.+|...|++ ++|+.+|+++++.+|.+..+|..+|.+|...|++++|+..|+++++..|.+ ..+..++.
T Consensus 371 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKI-SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4567888999999999997 999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch----hcC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE----RMK 216 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~ 216 (331)
++...| ++++|+.+|+++++..|.++.+|..+|.++... |++++|+..|+++++.. ..|
T Consensus 450 ~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 450 QHMQLG--------NILLANEYLQSSYALFQYDPLLLNELGVVAFNK---------SDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHHHT--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhhhccccch
Confidence 999877 599999999999999999999999999999999 99999999999999852 134
Q ss_pred CC-hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 217 SN-PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 217 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.+ ..+|..+|.++...|++++|...|++++..+|++... ..++.++...|++++|.+.+.++.++.+
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 43 6789999999999999999999999999999999888 9999999999999999999999988754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=182.78 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=194.2
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
+++|+..+...... .| . ...+..+|.++...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+
T Consensus 259 ~~~A~~~~~~~~~~---~~-~-~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 259 LLDAQVLLQESINL---HP-T-PNSYIFLALTLADKENS-QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HHHHHHHHHHHHHH---CC-C-HHHHHHHHHHTCCSSCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CC-C-chHHHHHHHHHHHhcCH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35555555554421 22 2 67889999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 122 FNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 122 ~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
|+++++..|++ .++..+|.++...| ++++|+..++++++.+|+++.++..+|.++... |+++
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~ 395 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQG--------KFTESEAFFNETKLKFPTLPEVPTFFAEILTDR---------GDFD 395 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT---------TCHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---------CCHH
Confidence 99999999998 89999999999887 499999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhchhcCCChhH------HhhHHHHHHHh----------hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNPDL------YFNCATVNKYL----------ENYERALSGFEASALKDPSLNAT-EEVQMMVN 263 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~------~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~ 263 (331)
+|+..|++++... |.++.. +..+|.++... |++++|+.+|++++..+|++... ..++.++.
T Consensus 396 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 396 TAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999855 655544 55667899999 99999999999999999999988 99999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHH
Q 020060 264 LLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 264 ~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.+|++++|++.+.++.++.+.
T Consensus 474 ~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--
T ss_pred HhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999988654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-22 Score=169.54 Aligned_cols=205 Identities=10% Similarity=0.069 Sum_probs=184.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.+......++.+|..+...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++..|.+ .++..
T Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 94 (327)
T 3cv0_A 16 NPYMYHENPMEEGLSMLKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 94 (327)
T ss_dssp CGGGGSSCHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 4445667788999999999998 999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH--------------HH-HHHhhhhhcCCCChhhHHHH
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL--------------GN-ACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~~~~~~~~~A 202 (331)
+|.++...| ++++|+..++++++.+|.+...+..+ +. ++... |++++|
T Consensus 95 la~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A 157 (327)
T 3cv0_A 95 LAVSHTNEH--------NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP---------NEYREC 157 (327)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSH---------HHHHHH
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc---------ccHHHH
Confidence 999999887 49999999999999999999888877 55 56656 999999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
+..++++++.. |.++.++..+|.++...|++++|+.++++++..+|++... ..++.++...|++++|+..+.++.++
T Consensus 158 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999955 9999999999999999999999999999999999999888 99999999999999999999998876
Q ss_pred HH
Q 020060 282 AS 283 (331)
Q Consensus 282 ~~ 283 (331)
.+
T Consensus 236 ~~ 237 (327)
T 3cv0_A 236 NP 237 (327)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=167.43 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=159.4
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHhCChhHHHHHHHHHHhc-------
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-------ADAWLCLGSCIWKKGDLPAAKNCFNLALSK------- 128 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 128 (331)
...+++.+|.++...|++ ++|+.++.+++.+.|.. +.++..+|.++...|++++|+.+|++++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEY-ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHH
Confidence 357899999999999998 99999999999998876 799999999999999999999999999994
Q ss_pred -------------------CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 129 -------------------GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 129 -------------------~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
+|.. .++..+|.++...| ++++|+.++++++..+|.++.++..+|.++...
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~- 186 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS--------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL- 186 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 4444 67888999999887 499999999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC------CCCcHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD------PSLNAT 255 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~ 255 (331)
|++++|+..++++++.. |.++.++..+|.++..+|++++|..+|+++++++ |++...
T Consensus 187 --------~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 187 --------MSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp --------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred --------CCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHH
Confidence 99999999999999955 9999999999999999999999999999999999 776654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-21 Score=178.35 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
..+.+++|+..++..... +....++..+|..+...|++ ++|+..|++++..+|.+..++..++.++...|++++
T Consensus 284 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-----EKSSDLLLCKADTLFVRSRF-IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-----GGCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred CcchHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 357788999999988742 46678899999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|+..++++++..|.+ ..+..+|.++...| ++++|+.+|+++++.+|.+..+|..++.+|...
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 420 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVN--------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE--------- 420 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------
Confidence 999999999999988 88899999999887 499999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
|++++|+..|++++... |.++.++..+|.++...|++++|..+|++++...|++... ..++.++...|++++|++.+
T Consensus 421 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp TCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999855 9999999999999999999999999999999999999888 99999999999999999999
Q ss_pred hhhhhHHH
Q 020060 276 AKTKRVAS 283 (331)
Q Consensus 276 ~~a~~l~~ 283 (331)
.++.++.+
T Consensus 499 ~~~~~~~~ 506 (597)
T 2xpi_A 499 QNALLLVK 506 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99987754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=181.64 Aligned_cols=219 Identities=15% Similarity=0.069 Sum_probs=192.7
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
.+++|+..+...... .+ . ..++..+|.++...|++ ++|+.++++++..+|.++.++..+|.++...|++++|+.
T Consensus 252 ~~~~A~~~~~~~l~~---~~-~-~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 252 DPLGAHEDIKKAIEL---FP-R-VNSYIYMALIMADRNDS-TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp CHHHHHHHHHHHHHH---CC-C-HHHHHHHHHHHHTSSCC-TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred CHHHHHHHHHHHHhh---Cc-c-HHHHHHHHHHHHHCCCH-HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 345555555544321 22 2 77888999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
+|+++++..|.+ .++..+|.++...| ++++|+..++++++..|.++.++..+|.++... |++
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~ 388 (514)
T 2gw1_A 326 DFDKAKELDPENIFPYIQLACLAYREN--------KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK---------NDF 388 (514)
T ss_dssp HHHHHHHTCSSCSHHHHHHHHHTTTTT--------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT---------TCH
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC---------CCH
Confidence 999999999988 88889999999887 499999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCChh------HHhhHHHHHHH---hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHH
Q 020060 200 LQSLKAYQNAEKDERMKSNPD------LYFNCATVNKY---LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~ 269 (331)
++|+..|++++... |.++. ++..+|.++.. .|++++|+.+|++++..+|++... ..++.++...|+++
T Consensus 389 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 389 DKALKQYDLAIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 99999999999855 77755 89999999999 999999999999999999999888 99999999999999
Q ss_pred HHHHhhhhhhhHHHH
Q 020060 270 NLLKGHAKTKRVASL 284 (331)
Q Consensus 270 ~a~~~~~~a~~l~~~ 284 (331)
+|+..+.++.++.+.
T Consensus 467 ~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 467 EAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998877553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=152.70 Aligned_cols=175 Identities=16% Similarity=0.132 Sum_probs=165.0
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
+.....+++.+|.++...|++ ++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.+ .++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRY-SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCH-HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 456678899999999999998 999999999999999999999999999999999999999999999999988 889999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
|.++...| ++++|+.++++++...|.++.++..+|.++... |++++|+.++++++... |.+
T Consensus 83 a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~ 143 (186)
T 3as5_A 83 GLTYVQVQ--------KYDLAVPLLIKVAEANPINFNVRFRLGVALDNL---------GRFDEAIDSFKIALGLR--PNE 143 (186)
T ss_dssp HHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHhc--------CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcC--ccc
Confidence 99999876 499999999999999999999999999999999 99999999999999955 999
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+.++..+|.++...|++++|..++++++..+|++..
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999999999999999999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=157.51 Aligned_cols=154 Identities=9% Similarity=0.004 Sum_probs=144.6
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC-Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
+.++.+++.+|.++...|++++|+.+|+++++++| .+ ..++.+|.++..+| ++++|+.+++++++.+|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--------KYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTTCSH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--------cHHHHHHHHHHHHHhCcch
Confidence 55679999999999999999999999999999997 55 88888999999887 4999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh-------hHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP-------DLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
+.+|..+|.++... |++++|+..|+++++.. |.++ .++.++|.++..+|++++|+.+|++++
T Consensus 76 ~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 76 ANAYIGKSAAYRDM---------KNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999 99999999999999955 9998 669999999999999999999999999
Q ss_pred hcCCC--CcHH-HHHHHHHHHHHHH
Q 020060 247 LKDPS--LNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 247 ~~~~~--~~~~-~~l~~~~~~l~~~ 268 (331)
+++|+ +... ..+|.++...|+.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999 8787 9999999999888
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=160.23 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=169.7
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHhCChhHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--NPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
+++.++..++.. .+ .....+..++..+...+++ ++|++.+++.+.. +|+++.+++.+|.++...|++++|
T Consensus 49 ~~~~al~~~~~~------~~-~~~~a~~~la~~~~~~~~~-~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 49 KYGVVLDEIKPS------SA-PELQAVRMFAEYLASHSRR-DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp CHHHHHHHSCTT------SC-HHHHHHHHHHHHHHCSTTH-HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHhccc------CC-hhHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 445666666542 22 3566777888888888886 9999999998875 599999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|++ |.+ .++..+|.++..+| ++++|++.++++++.+|++.......+.+.... ..|
T Consensus 121 l~~l~~-----~~~~~~~~~l~~~~~~~g--------~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-------~~~ 180 (291)
T 3mkr_A 121 LRTLHQ-----GDSLECMAMTVQILLKLD--------RLDLARKELKKMQDQDEDATLTQLATAWVSLAA-------GGE 180 (291)
T ss_dssp HHHHTT-----CCSHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------CTT
T ss_pred HHHHhC-----CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-------Cch
Confidence 999988 566 88888999999887 499999999999998888754433333222211 128
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHH-HHhh
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENL-LKGH 275 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a-~~~~ 275 (331)
++++|+..|++++... |.++.+++++|.++..+|++++|...|++++..+|+++.. .+++.++..+|+..++ ...+
T Consensus 181 ~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 181 KLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999854 9999999999999999999999999999999999999988 8899999999988765 4666
Q ss_pred hhhhhHHH
Q 020060 276 AKTKRVAS 283 (331)
Q Consensus 276 ~~a~~l~~ 283 (331)
.++.++.|
T Consensus 259 ~~~~~~~P 266 (291)
T 3mkr_A 259 SQLKDAHR 266 (291)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 77776654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-21 Score=160.91 Aligned_cols=207 Identities=9% Similarity=0.001 Sum_probs=168.5
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
..++|++.++.+.... ..+..+.+++.+|.++...|++ ++|+..+++ |.++.++..+|.++...|++++|+.
T Consensus 80 ~~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~-~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 80 RRDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNP-DAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp THHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCH-HHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCH-HHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455666665533110 1245667899999999999997 999999988 8999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.|+++++.+|++ ......+.+....+ .+++++|+.+|+++++.+|+++.+|+++|.++... |++
T Consensus 152 ~l~~~~~~~p~~~~~~l~~a~~~l~~~------~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~ 216 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQLATAWVSLAAG------GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ---------GRW 216 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT---------TCH
T ss_pred HHHHHHhhCcCcHHHHHHHHHHHHHhC------chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCH
Confidence 999999999986 22222232222222 14799999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER-ALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
++|+..|++++... |+++.++.++|.++...|++.+ +..+++++++++|+++.... .....+.++++...|
T Consensus 217 ~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d---~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 217 EAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE---YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH---HHHHHHHHHHHHHHc
Confidence 99999999999955 9999999999999999999976 57899999999999986532 345666666666554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=177.82 Aligned_cols=202 Identities=12% Similarity=0.159 Sum_probs=190.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+..+.+++.+|.++...|++ ++|+.+|++++..+|. +.++..+|.++...|++++|+.+|++++...|.+ .++..+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 311 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDP-LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence 56788999999999999998 9999999999999999 9999999999999999999999999999999988 8899999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
.++...| ++++|+..++++++.+|.++.++..+|.++... |++++|+..++++++.. |.++
T Consensus 312 ~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~ 372 (514)
T 2gw1_A 312 QMNFILQ--------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRE---------NKFDDCETLFSEAKRKF--PEAP 372 (514)
T ss_dssp HHHHHTT--------CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT---------TCHHHHHHHHHHHHHHS--TTCS
T ss_pred HHHHHhC--------CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHc--ccCH
Confidence 9999887 499999999999999999999999999999988 99999999999999954 9999
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H-HHHHHHHHH---HHHHHHHHHhhhhhhhHHH
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T-EEVQMMVNL---LDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~-~~l~~~~~~---l~~~~~a~~~~~~a~~l~~ 283 (331)
.++..+|.++...|++++|+.+|++++...|++.. . ..++.++.. .|++++|+..+.++..+.+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999998864 5 999999999 9999999999999887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=170.39 Aligned_cols=209 Identities=13% Similarity=0.030 Sum_probs=169.6
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL---------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP 130 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 130 (331)
+...+.++..+|.++...|++ ++|+++|++++++ +|....+|.++|.+|..+|++++|+.+|++++++.+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~-~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQN-EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 345678889999999999998 9999999999986 567788999999999999999999999999998743
Q ss_pred --------Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 131 --------NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 131 --------~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
.. .++..+|.++..+|. +++++|+.+|+++++++|+++.++..+|.++.... ..++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~------~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~------~~~~~~~ 193 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGG------NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD------NWPPSQN 193 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCT------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH------HSCCCCC
T ss_pred hcccccchhhHHHHHHHHHHHHHHcc------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------CchHHHH
Confidence 22 567778888887763 57999999999999999999999999998876540 0145577
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
|+..|+++++.+ |.++.++.++|..+.. .|++++|..+|++++..+|++... ..+|.++...|++++|+..+.
T Consensus 194 al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 194 AIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp THHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 888888888855 8888888888876654 467788888888888888888887 888888888888888888888
Q ss_pred hhhhHHH
Q 020060 277 KTKRVAS 283 (331)
Q Consensus 277 ~a~~l~~ 283 (331)
++.++.|
T Consensus 272 ~al~~~p 278 (472)
T 4g1t_A 272 KALEYIP 278 (472)
T ss_dssp HHHHHST
T ss_pred HHHHhCC
Confidence 8876643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=177.41 Aligned_cols=223 Identities=11% Similarity=0.105 Sum_probs=195.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCc---chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChh
Q 020060 40 NESDLALRLLGSVPPEQRKSP---TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP 116 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 116 (331)
+.+++|+..+..........+ ...+.+++.+|.++...|++ ++|+.+|++++..+|+ +.++..+|.++...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL-LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 466777777766543211111 12356788999999999997 9999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCC
Q 020060 117 AAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWD 195 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 195 (331)
+|+.+|+++++..|++ .++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-------- 357 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ--------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ-------- 357 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------
Confidence 9999999999999998 88999999999887 499999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-------HHHHHHHHHH---
Q 020060 196 HSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-------EEVQMMVNLL--- 265 (331)
Q Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~l~~~~~~l--- 265 (331)
|++++|+..++++++.. |.++.++..+|.++...|++++|+.+|++++...|++... ..++.++...
T Consensus 358 -g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 358 -GKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp -TCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999955 9999999999999999999999999999999988765432 4567888888
Q ss_pred -------HHHHHHHHhhhhhhhHHH
Q 020060 266 -------DKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 266 -------~~~~~a~~~~~~a~~l~~ 283 (331)
|++++|+..+.++.++.+
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCC
Confidence 999999999999887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=156.31 Aligned_cols=174 Identities=12% Similarity=0.072 Sum_probs=164.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh--cCCCh-HHHhhH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS--KGPNK-KILCQL 138 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~-~~~~~l 138 (331)
....+++.+|.++...|++ ++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++. ..|.. .++..+
T Consensus 69 ~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEP-KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 3467899999999999998 9999999999999999999999999999999999999999999999 77777 888999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
|.++...| ++++|+.+++++++..|.++.++..+|.++... |++++|+..+++++... |.+
T Consensus 148 a~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~--~~~ 208 (252)
T 2ho1_A 148 GLVSLQMK--------KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE---------REYVPARQYYDLFAQGG--GQN 208 (252)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTTS--CCC
T ss_pred HHHHHHcC--------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--cCc
Confidence 99999887 499999999999999999999999999999999 99999999999999955 999
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+..+..++.++...|++++|..++++++..+|++...
T Consensus 209 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999999999998764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-22 Score=151.31 Aligned_cols=146 Identities=8% Similarity=0.014 Sum_probs=124.8
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhcc
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQ 147 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~ 147 (331)
.+|.++...|++ ++|+..+++++..+|+.+.+++.+|.+|...|++++|+.+|+++++++|++ .+|..+|.++..+|
T Consensus 2 ~LG~~~~~~~~~-e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~- 79 (150)
T 4ga2_A 2 PLGSMRRSKADV-ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE- 79 (150)
T ss_dssp -----CCCHHHH-HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred HhHHHHHHcChH-HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence 368888889996 999999999999999999999999999999999999999999999999988 88999999999887
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH-HHHHHhchhcCCChhHHhhHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA-YQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~la 226 (331)
++++|+.+|+++++++|+++.+|+.+|.++... |++++|... ++++++.. |+++.++..++
T Consensus 80 -------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~aa~~~~~~al~l~--P~~~~~~~l~~ 141 (150)
T 4ga2_A 80 -------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKN---------DVTDGRAKYWVERAAKLF--PGSPAVYKLKE 141 (150)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------CSSSSHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 499999999999999999999999999999888 888777665 58899855 99999998888
Q ss_pred HHHHHhhc
Q 020060 227 TVNKYLEN 234 (331)
Q Consensus 227 ~~~~~~g~ 234 (331)
.++...|+
T Consensus 142 ~ll~~~G~ 149 (150)
T 4ga2_A 142 QLLDCEGE 149 (150)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhCc
Confidence 88887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=183.79 Aligned_cols=180 Identities=11% Similarity=0.005 Sum_probs=163.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAV--------KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KI 134 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 134 (331)
...++..| ...|++ ++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|++ .+
T Consensus 394 ~~a~~~~a---~~~~~~-~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 469 (681)
T 2pzi_A 394 VAASVLQA---TVLSQP-VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL 469 (681)
T ss_dssp TTHHHHHH---TTTCCH-HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHhhc---ccccCH-HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH
Confidence 33444555 678997 99999999999 8999999999999999999999999999999999999999 99
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
++.+|.++..+| ++++|+..|+++++++|+++.+|+++|.++... |++++ +..|+++++.+
T Consensus 470 ~~~lg~~~~~~g--------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~---------g~~~~-~~~~~~al~~~- 530 (681)
T 2pzi_A 470 VWYRAVAELLTG--------DYDSATKHFTEVLDTFPGELAPKLALAATAELA---------GNTDE-HKFYQTVWSTN- 530 (681)
T ss_dssp HHHHHHHHHHHT--------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH---------TCCCT-TCHHHHHHHHC-
T ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------CChHH-HHHHHHHHHhC-
Confidence 999999999887 499999999999999999999999999999999 99999 99999999955
Q ss_pred cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 215 MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
|.++.+++++|.++..+|++++|+.+|+++++++|++..+ .+++.++...+.
T Consensus 531 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 -DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999888 888888766443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=170.88 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=173.3
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh-hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHH
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDL-PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
+.+ ++++..+.+.....|..+.+++.+|.++...|++ ++|+.+|+++++++|++ .++..+|.++...| +
T Consensus 82 ~~~-~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~ 152 (474)
T 4abn_A 82 EEM-EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--------D 152 (474)
T ss_dssp HHH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------C
T ss_pred HHH-HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------C
Confidence 344 7888899999999999999999999999999999 99999999999999998 99999999999887 4
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh---
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL--- 232 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--- 232 (331)
+++|+.+|+++++++|+ ..++..+|.++............|++++|+..|+++++.. |.++.+|+++|.++..+
T Consensus 153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 7999999999874200000001189999999999999955 99999999999999999
Q ss_pred -----hcHHHHHHHHHHHHhcCC---CCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 233 -----ENYERALSGFEASALKDP---SLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 233 -----g~~~~A~~~~~~al~~~~---~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|++++|+.+|++++.++| ++... ..+|.++..+|++++|+..+.++.++.+
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999 88888 9999999999999999999999987754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-20 Score=150.08 Aligned_cols=174 Identities=11% Similarity=0.057 Sum_probs=162.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-CChhHHHHHHHHHHh--cCCCh-HHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-GDLPAAKNCFNLALS--KGPNK-KILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--~~~~~-~~~~~ 137 (331)
....+++.+|.++...|++ ++|+.+|++++...|.++.++..+|.++... |++++|+.+++++++ ..|.. ..+..
T Consensus 40 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVN-DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 3467889999999999998 9999999999999999999999999999999 999999999999999 55665 78899
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK- 216 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 216 (331)
+|.++...| ++++|+.+++++++..|.++.++..+|.++... |++++|+..+++++... |
T Consensus 119 l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~--~~ 179 (225)
T 2vq2_A 119 KGICSAKQG--------QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA---------GQLGDADYYFKKYQSRV--EV 179 (225)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHH--CS
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CC
Confidence 999999887 499999999999999999999999999999999 99999999999999955 9
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.++..+..++.++...|++++|..+++.+...+|+++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999998865
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=168.23 Aligned_cols=223 Identities=12% Similarity=0.019 Sum_probs=177.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc--ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---hCC
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV--VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK---KGD 114 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~ 114 (331)
..+++++.+....... .....+.++..+|.++.. .++| ++|+.+|++++.++|+++.++..+|.++.. .++
T Consensus 115 ~~~~ka~~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~y-~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSP---YRIESPELDCEEGWTRLKCGGNQN-ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp HHHHHHHHHHHHSCCS---SCCCCHHHHHHHHHHHHHHCTTHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhHhcccc---cchhhHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence 4455566665555432 334556777788876655 4577 999999999999999999999999988654 577
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
+++|+..|+++++++|++ .++..+|..+..++. ..+++++|..++++++..+|.++.++..+|.+|...
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~----~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~------ 260 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE----EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK------ 260 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc------
Confidence 889999999999999998 778888888777654 445788999999999999999999999999999988
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-------------------hcHHHHHHHHHHHHhcCCCCcH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-------------------ENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|++++|+..|+++++.. |+++.++.++|.+|... +.+++|+.+|++++.++|.+..
T Consensus 261 ---~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 335 (472)
T 4g1t_A 261 ---DEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335 (472)
T ss_dssp ---TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred ---CchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence 99999999999999854 99998888888887543 3467788888888888888877
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
. ..+|.++...|++++|+..|.+++.+
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6 88888888888888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=157.45 Aligned_cols=204 Identities=10% Similarity=0.047 Sum_probs=177.1
Q ss_pred chhhHHHHHhhhhhhc-------cccc------HHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 61 TQRATYEYLKGKILDV-------VPEY------RKDAEDHLSKAVK-LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~-------~~~~------~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
+..+.+|+.+|..+.. .|++ .++|+..|++++. ++|++..+|..+|.++...|++++|...|++++
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3556788888888763 4662 1789999999999 799999999999999999999999999999999
Q ss_pred hcCCCh-H-HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh-hhhhcCCCChhhHHHHH
Q 020060 127 SKGPNK-K-ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT-SFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 127 ~~~~~~-~-~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~A~ 203 (331)
++.|.+ . +|..+|.++...| ++++|...|+++++..|....+|...+.+... . |++++|+
T Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~---------~~~~~A~ 189 (308)
T 2ond_A 127 AIEDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS---------KDKSVAF 189 (308)
T ss_dssp TSSSSCTHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS---------CCHHHHH
T ss_pred hccccCccHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc---------CCHHHHH
Confidence 999987 5 8999999998775 59999999999999999988888766665432 5 8999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc---CCC-CcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK---DPS-LNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~-~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
..|+++++.. |+++.+|..+|.++...|++++|...|++++.. .|+ .... ..++......|+.+.+...+.++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999965 999999999999999999999999999999996 554 3444 77788888899999999888888
Q ss_pred hhHHH
Q 020060 279 KRVAS 283 (331)
Q Consensus 279 ~~l~~ 283 (331)
.++.|
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=148.16 Aligned_cols=178 Identities=10% Similarity=0.068 Sum_probs=151.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~ 136 (331)
+..++.+|..+...|+| ++|+..|++++...|.. ..+++.+|.+|...|++++|+..|+++++..|++ .+++
T Consensus 4 ~~~~~~~a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56788999999999998 99999999999998876 4799999999999999999999999999999988 3788
Q ss_pred hHHHHHHHhccCc----------hhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhh
Q 020060 137 QLSMLERSMAQGS----------ENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFF 189 (331)
Q Consensus 137 ~l~~~~~~~g~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~ 189 (331)
.+|.++..+|... ....+++++|+..|+++++.+|+++.++ ..+|.+|...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~-- 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER-- 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 9999988643110 0012579999999999999999998765 4677788877
Q ss_pred hcCCCChhhHHHHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
|++++|+..|+++++.. |+++ .+++.+|.++..+|++++|+..++++....|++.
T Consensus 161 -------~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 161 -------GAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------TCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------CcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 99999999999999844 7776 6689999999999999999999998888888754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-21 Score=161.81 Aligned_cols=202 Identities=12% Similarity=0.116 Sum_probs=161.7
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----- 132 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 132 (331)
...+...|.++...|+| ++|+.+|.+++.+.+. .+.++.++|.+|...|++++|+.+|++++++.|..
T Consensus 37 ~~~~~~a~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44455567888999998 9999999999998532 26789999999999999999999999999987643
Q ss_pred --HHHhhHHHHHHHh-ccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 --KILCQLSMLERSM-AQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 --~~~~~l~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.++.++|.++... |+ +++|+.+|++++++.|.. ..++.++|.++... |++++|+
T Consensus 116 ~a~~~~~lg~~~~~~lg~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~ 178 (292)
T 1qqe_A 116 GANFKFELGEILENDLHD--------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD---------GQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh---------CCHHHHH
Confidence 4788899999984 74 999999999999998765 45788999999999 9999999
Q ss_pred HHHHHHHhchhcCCChh-------HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH------HHHHHHHH--HHHHH
Q 020060 204 KAYQNAEKDERMKSNPD-------LYFNCATVNKYLENYERALSGFEASALKDPSLNAT------EEVQMMVN--LLDKI 268 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~l~~~~~--~l~~~ 268 (331)
.+|++++... |.++. .+.++|.++..+|++++|+.+|++++.++|++... ..++..+. ..+++
T Consensus 179 ~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 179 DIYSKLIKSS--MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHTT--SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHH--hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999955 66543 57899999999999999999999999999987653 22233332 34568
Q ss_pred HHHHHhhhhhhhHHHHH
Q 020060 269 ENLLKGHAKTKRVASLA 285 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~ 285 (331)
.+|++.|.++.++.+..
T Consensus 257 ~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHTTSSCCCHHH
T ss_pred HHHHHHhccCCccHHHH
Confidence 88888888887766654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=160.29 Aligned_cols=207 Identities=16% Similarity=0.086 Sum_probs=179.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 129 (331)
+.+..+.++..+|.++...|++ ++|+.+|++++.+ .|..+.++..+|.++...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5678889999999999999998 9999999999995 66778899999999999999999999999999873
Q ss_pred -------CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--------CCCchhHHHHHHHHHhhhhhcCC
Q 020060 130 -------PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD--------VKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 130 -------~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
|.. .++..+|.++...| ++++|+.+++++++.. |....++..+|.++...
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 166 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRG--------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ------ 166 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT------
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcC--------cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc------
Confidence 333 78888999999887 4999999999999874 56677899999999988
Q ss_pred CChhhHHHHHHHHHHHHhc------hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC------------------
Q 020060 194 WDHSKLLQSLKAYQNAEKD------ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD------------------ 249 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------ 249 (331)
|++++|+.++++++.. ...|....++..+|.++...|++++|..+|++++...
T Consensus 167 ---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 167 ---GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 9999999999999984 1135556779999999999999999999999999752
Q ss_pred -------------------------------CCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 250 -------------------------------PSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 250 -------------------------------~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|..... ..++.++...|++++|++.+.++.++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 333344 8899999999999999999999988753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=154.58 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=145.7
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLN----PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
..++......|++ ++|+..|+++++.. |..+.++..+|.++...|++++|+.+|+++++.+|.+ .++..+|.++
T Consensus 9 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 9 EVLAVPLQPTLQQ-EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 87 (275)
T ss_dssp GGSCCCCCCCHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred cceeeccCccchH-HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3456667778998 99999999999984 4568899999999999999999999999999999998 8999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
...| ++++|+.+++++++.+|+++.++..+|.++... |++++|+..|+++++.. |.++...
T Consensus 88 ~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~--~~~~~~~ 148 (275)
T 1xnf_A 88 TQAG--------NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG---------GRDKLAQDDLLAFYQDD--PNDPFRS 148 (275)
T ss_dssp HHTT--------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHcc--------CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhC--CCChHHH
Confidence 9887 499999999999999999999999999999999 99999999999999955 8888766
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
...+.+ ...|++++|+..|.+++...|.+
T Consensus 149 ~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 149 LWLYLA-EQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHHH-HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHhcCCcc
Confidence 655544 66799999999998888877765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-19 Score=148.42 Aligned_cols=189 Identities=15% Similarity=0.173 Sum_probs=96.4
Q ss_pred HHHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHHh
Q 020060 65 TYEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKILC 136 (331)
Q Consensus 65 ~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 136 (331)
.+++.+|.++.. .+++ ++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++++.. ...++.
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~-~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 114 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNL-KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCA 114 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHH
Confidence 444555555555 5554 55555555555543 45555555555555 555555555555555442 124455
Q ss_pred hHHHHHHH----hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----hhhhcCCCChhhHHHHHHHHHH
Q 020060 137 QLSMLERS----MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT----SFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 137 ~l~~~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
.+|.++.. .+ ++++|+.+++++++.. ++.++..+|.+|.. . +++++|+.+|++
T Consensus 115 ~lg~~~~~~~~~~~--------~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~---------~~~~~A~~~~~~ 175 (273)
T 1ouv_A 115 SLGGIYHDGKVVTR--------DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP---------KDLKKALASYDK 175 (273)
T ss_dssp HHHHHHHHCSSSCC--------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC---------CCHHHHHHHHHH
T ss_pred HHHHHHHcCCCccc--------CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC---------CCHHHHHHHHHH
Confidence 55555554 33 2555555555555543 34455555555554 3 555555555555
Q ss_pred HHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhh
Q 020060 209 AEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTK 279 (331)
Q Consensus 209 al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~ 279 (331)
+++ ..++.+++++|.++.. .+++++|+.+|+++++..| ... ..++.++.. .+++++|++.+.++.
T Consensus 176 a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 176 ACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHH----CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 554 2344555555555555 5555555555555555443 233 555555554 555555555555555
Q ss_pred hHH
Q 020060 280 RVA 282 (331)
Q Consensus 280 ~l~ 282 (331)
++.
T Consensus 250 ~~~ 252 (273)
T 1ouv_A 250 KLG 252 (273)
T ss_dssp HHT
T ss_pred HcC
Confidence 443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-21 Score=147.97 Aligned_cols=142 Identities=13% Similarity=0.025 Sum_probs=125.9
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 182 (331)
.||.++...|++++|+..+++++...|++ ..++.+|.++..+| ++++|+.+|+++++++|+++.+|..+|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--------~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--------EYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 47889999999999999999999999988 78899999999887 4999999999999999999999999999
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHH-HHHHHhcCCCCcHH-HHHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSG-FEASALKDPSLNAT-EEVQM 260 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~-~~l~~ 260 (331)
+|... |++++|+.+|+++++.+ |+++.+++++|.++...|++++|... ++++++++|+++.. ...+.
T Consensus 74 ~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 74 LYELE---------ENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHc---------CchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 99999 99999999999999965 99999999999999999999887765 59999999999987 55555
Q ss_pred HHHH
Q 020060 261 MVNL 264 (331)
Q Consensus 261 ~~~~ 264 (331)
++..
T Consensus 143 ll~~ 146 (150)
T 4ga2_A 143 LLDC 146 (150)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-19 Score=149.65 Aligned_cols=193 Identities=13% Similarity=0.085 Sum_probs=174.5
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 137 (331)
..+.+++.+|.++...|++ ++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.. ...+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~-~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDF-TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCH-HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 4567889999999999997 999999999999 7889999999999999 999999999999999986 3488999
Q ss_pred HHHHHHH----hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----hhhhcCCCChhhHHHHHHHHHHH
Q 020060 138 LSMLERS----MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT----SFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 138 l~~~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
+|.++.. .+ ++++|+.+|+++++.+ ++.+++.+|.+|.. . +++++|+.+|+++
T Consensus 80 lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~---------~~~~~A~~~~~~a 140 (273)
T 1ouv_A 80 LGNLYYSGQGVSQ--------NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVT---------RDFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHTSSSCC--------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSC---------CCHHHHHHHHHHH
T ss_pred HHHHHhCCCCccc--------CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcc---------cCHHHHHHHHHHH
Confidence 9999998 76 4999999999999874 88999999999999 8 9999999999999
Q ss_pred HhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhh
Q 020060 210 EKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKR 280 (331)
Q Consensus 210 l~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~ 280 (331)
++ ..++.+++++|.++.. .+++++|+.+|+++++.. +... ..++.++.. .+++++|+..+.++.+
T Consensus 141 ~~----~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred Hh----cCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 98 4478899999999999 999999999999999874 4555 899999999 9999999999999886
Q ss_pred HHH
Q 020060 281 VAS 283 (331)
Q Consensus 281 l~~ 283 (331)
..+
T Consensus 215 ~~~ 217 (273)
T 1ouv_A 215 LEN 217 (273)
T ss_dssp TTC
T ss_pred CCC
Confidence 643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=146.51 Aligned_cols=168 Identities=10% Similarity=0.010 Sum_probs=146.2
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh----------------HHHHHHHhccCchhHHHHHHHHH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ----------------LSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~----------------l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
.++.+...|..+...|++++|+.+|+++++.+|++ .+++. +|.++...| ++++|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~ 74 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--------NYDKAY 74 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--------CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--------CHHHHH
Confidence 46788999999999999999999999999999998 88888 999999887 499999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc--HHHH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN--YERA 238 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~--~~~A 238 (331)
..|+++++++|+++.+|..+|.++... |++++|+..|+++++.+ |+++.+++++|.+|...|+ ...+
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCR---------GQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999 99999999999999965 9999999999999987765 4567
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 239 LSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 239 ~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
...|.+++...|........|.++..+|++++|+..+.++.++.|.
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7788887654433222377888899999999999999999987653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-19 Score=146.77 Aligned_cols=173 Identities=12% Similarity=0.041 Sum_probs=153.0
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 92 VKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 92 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
..+.|.++..++.+|..++..|++++|+..|+++++..|++ .+++.+|.++..+| ++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~~l 79 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--------EYLLAASEYERFI 79 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--------cHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999876 68899999999887 4999999999999
Q ss_pred cCCCCC---chhHHHHHHHHHh--------hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH--------------
Q 020060 168 TLDVKD---GNSWYNLGNACLT--------SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY-------------- 222 (331)
Q Consensus 168 ~~~p~~---~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------------- 222 (331)
+..|++ +.+++.+|.++.. . |++++|+..|+++++.. |+++.+.
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQ---------TDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLA 148 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCC---------HHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccc---------hhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHH
Confidence 998865 5689999999998 7 99999999999999954 8887665
Q ss_pred ---hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHH----------HHHHHHHHhhhhhhhHHH
Q 020060 223 ---FNCATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLL----------DKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 223 ---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l----------~~~~~a~~~~~~a~~l~~ 283 (331)
+.+|.+|...|++++|+..|++++...|++.. . ..++.++..+ |++++|+..+.++.+..|
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 88999999999999999999999999998543 4 8889999877 889999998888876543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-20 Score=164.00 Aligned_cols=214 Identities=17% Similarity=0.181 Sum_probs=168.1
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++...+.++..+|.++...|++ ++|+.++++++.+ .|..+.++..+|.++...|++++|+.++++++++.|..
T Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 42 DLKTLSAIYSQLGNAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 4445578899999999999998 9999999999887 34557899999999999999999999999999887653
Q ss_pred -------HHHhhHHHHHHHhccC------------chhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhh
Q 020060 133 -------KILCQLSMLERSMAQG------------SENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~------------~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 187 (331)
.++..+|.++...|+. .......+++|+.++.+++.+ .|....++..+|.++...
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 4788899999877520 001111289999999998876 334456788899999988
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCCh------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP------DLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT 255 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~ 255 (331)
|++++|+.++++++... +... .++.++|.++...|++++|+.+|++++.+.|.. ...
T Consensus 201 ---------g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 201 ---------GNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp ---------TBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------cCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 99999999999998743 3333 268888999999999999999999888876654 233
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..++.++...|++++|+..+.++..+.+.
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888877766443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=165.86 Aligned_cols=215 Identities=14% Similarity=0.147 Sum_probs=176.9
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 129 (331)
++...+.+++.+|.++...|++ ++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 81 ~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 81 DLRTLSAIYSQLGNAYFYLGDY-NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4445567899999999999998 9999999999988 56778899999999999999999999999999884
Q ss_pred ---CCh-HHHhhHHHHHHHhcc---------CchhHHHHHHHHHHHHHHHhcCC------CCCchhHHHHHHHHHhhhhh
Q 020060 130 ---PNK-KILCQLSMLERSMAQ---------GSENQAEIVEESIQHAKEAITLD------VKDGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 130 ---~~~-~~~~~l~~~~~~~g~---------~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~ 190 (331)
+.. .++..+|.++...|+ ........+++|+.++++++++. +....++..+|.++...
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--- 236 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL--- 236 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---
T ss_pred hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---
Confidence 223 688889999997752 01111122999999999998764 33455889999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCCh------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH-HH
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNP------DLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT-EE 257 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~-~~ 257 (331)
|++++|+.++++++... +... .++.++|.++..+|++++|+.+|++++.+.+.. ... ..
T Consensus 237 ------g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 237 ------GDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp ------TCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999854 4333 378999999999999999999999999987754 233 78
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 258 VQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 258 l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
++.++...|++++|+..+.++..+.+..
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 8999999999999999999998876544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=159.40 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=179.9
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhC
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS-------LADAWLCLGSCIWKKG 113 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g 113 (331)
.+.+++.++...+ ++...+.+++.+|.++...|++ ++|+.++.+++++.+. .+.++..+|.+|...|
T Consensus 125 ~~~~al~~~~~~~-----~~~~~a~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 198 (383)
T 3ulq_A 125 FFKKAESKLIFVK-----DRIEKAEFFFKMSESYYYMKQT-YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK 198 (383)
T ss_dssp HHHHHHTTGGGCC-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc
Confidence 3444444444443 4566789999999999999998 9999999999998443 3568999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-----CC-CCCchhHHHH
Q 020060 114 DLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-----LD-VKDGNSWYNL 180 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~l 180 (331)
++++|+.+|++++++.+.. .++.++|.++..+| ++++|+.+++++++ .+ |..+.++.++
T Consensus 199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 199 QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 9999999999999886433 47889999999887 49999999999999 56 7788899999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhc---HHHHHHHHHHHHhcCCCCcH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLEN---YERALSGFEASALKDPSLNA 254 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~ 254 (331)
|.++... |++++|+.++++++.......++ ..+..+|.++...|+ +.+|+.++++. ...|....
T Consensus 271 ~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 271 TQIHYKL---------GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHH
Confidence 9999999 99999999999999854222333 336789999999999 88888888876 22233333
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
. ..+|.++...|++++|...+.++..+...+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4 889999999999999999999999876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=149.29 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCCh-------hHHHHHHHHHHh-cCCCh-HHHhhHHHHHHHh
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWK-------KGDL-------PAAKNCFNLALS-KGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~-~~~~~l~~~~~~~ 145 (331)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ +.|++ .+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 679999999999999999999999999874 5886 999999999999 79988 7999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGN-SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
| ++++|...|+++++..|.++. +|..+|.++... |++++|+..|+++++.. |.+..+|..
T Consensus 113 ~--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~--p~~~~~~~~ 173 (308)
T 2ond_A 113 M--------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA---------EGIKSGRMIFKKAREDA--RTRHHVYVT 173 (308)
T ss_dssp T--------CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHTST--TCCTHHHHH
T ss_pred C--------CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 7 499999999999999999987 999999999988 99999999999999955 888888877
Q ss_pred HHHHHHH-hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 225 CATVNKY-LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 225 la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.+.+... .|++++|...|+++++.+|++... ..++.++..+|++++|...|.++...
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7766543 799999999999999999999888 99999999999999999999988763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-20 Score=143.99 Aligned_cols=164 Identities=10% Similarity=-0.009 Sum_probs=141.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...++.+|..+...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| + ..+..++.+.
T Consensus 6 ~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEH-AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCH-HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 34577889999999998 9999999999999999999999999999999999999999999999999 6 4433344332
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC--hh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN--PD 220 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~ 220 (331)
.... ....+|+..++++++.+|+++.+++.+|.++... |++++|+..|+++++.. |.. +.
T Consensus 84 ~~~~-------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~--p~~~~~~ 145 (176)
T 2r5s_A 84 LHQQ-------AAESPELKRLEQELAANPDNFELACELAVQYNQV---------GRDEEALELLWNILKVN--LGAQDGE 145 (176)
T ss_dssp HHHH-------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTTC--TTTTTTH
T ss_pred HHhh-------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhC--cccChHH
Confidence 2110 1234579999999999999999999999999999 99999999999999955 765 66
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 221 LYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
++.++|.++..+|+.++|+..|++++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-19 Score=137.51 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=157.3
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
...++..+|.++...|++++|+..|+++++..|.+ .++..+|.++...| ++++|+.+++++++..|.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~ 78 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG--------AVDRGTELLERSLADAPDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHH
Confidence 36788999999999999999999999999999988 88999999999887 4999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT- 255 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 255 (331)
+..+|.++... |++++|+..+++++... |.++.++..+|.++...|++++|..+|++++...|++...
T Consensus 79 ~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 147 (186)
T 3as5_A 79 ATVLGLTYVQV---------QKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH 147 (186)
T ss_dssp HHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHh---------cCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHH
Confidence 99999999999 99999999999999954 9999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 256 EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
..++.++...|++++|...+.++..+.+
T Consensus 148 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 148 RAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=158.30 Aligned_cols=221 Identities=15% Similarity=0.176 Sum_probs=185.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhC
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKG 113 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g 113 (331)
..+++++....... .++..+.++..+|.++...|++ ++|+.++.+++.+.|.. +.++..+|.+|...|
T Consensus 68 ~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 68 EYHHHDLTLARTIG-----DQLGEAKASGNLGNTLKVLGNF-DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 44455555555443 4567788999999999999998 99999999999987643 558999999999999
Q ss_pred C--------------------hhHHHHHHHHHHhcCC------Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 114 D--------------------LPAAKNCFNLALSKGP------NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 114 ~--------------------~~~A~~~~~~al~~~~------~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
+ +++|+.++.+++.+.+ .. .++..+|.++..+| ++++|+.+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a 213 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG--------NFRDAVIAHEQR 213 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------BHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHH
Confidence 9 9999999999987732 11 57888999999887 499999999999
Q ss_pred hcCCCCCch------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC------hhHHhhHHHHHHHhhc
Q 020060 167 ITLDVKDGN------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN------PDLYFNCATVNKYLEN 234 (331)
Q Consensus 167 l~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~la~~~~~~g~ 234 (331)
+++.|..+. ++..+|.++... |++++|+.++++++... +.. ..++.++|.++...|+
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFL---------GEFETASEYYKKTLLLA--RQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHH--HhCcCchHHHHHHHHHHHHHHHhCc
Confidence 998776655 899999999999 99999999999999854 433 5678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC------cHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 235 YERALSGFEASALKDPSL------NAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~------~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
+++|..+|++++.+.+.. ... ..++.++...|++++|+..+.++.++.+..
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999986554 224 889999999999999999999999885543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-20 Score=157.47 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=176.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++...+.++..+|.++...|++ ++|+.++++++.+ .|..+.++..+|.++...|++++|+.++++++++.+..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 38 DLKTLSAIYSQLGNAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 4445578899999999999998 9999999999887 44557899999999999999999999999999876543
Q ss_pred -------HHHhhHHHHHHHhccC------------chhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhh
Q 020060 133 -------KILCQLSMLERSMAQG------------SENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~------------~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 187 (331)
.++..+|.++...|+. .......+++|+.++++++.. .+....++..+|.++...
T Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 3778899999877520 011112299999999998875 233456889999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH-H
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT-E 256 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~-~ 256 (331)
|++++|+.++++++.......+ ..++.++|.++...|++++|..++++++.+.+.. ... .
T Consensus 197 ---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 197 ---------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 9999999999999974311122 2379999999999999999999999999886654 334 7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHh
Q 020060 257 EVQMMVNLLDKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~ 286 (331)
.++.++...|++++|+..+.++..+.+...
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999988766543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=149.63 Aligned_cols=224 Identities=19% Similarity=0.195 Sum_probs=162.2
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHH
Q 020060 36 SKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGS 107 (331)
Q Consensus 36 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 107 (331)
......+++++..+...... .++..+.++..+|.++...|++ ++|+.+|++++.+ .|..+.++..+|.
T Consensus 18 ~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGH---DHPDVATMLNILALVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCS---SSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34456677777777665432 4467888999999999999998 9999999999987 3666889999999
Q ss_pred HHHHhCChhHHHHHHHHHHhc--------CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------C
Q 020060 108 CIWKKGDLPAAKNCFNLALSK--------GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------D 170 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~--------~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~ 170 (331)
++...|++++|+.+|++++.+ .|.. .++..+|.++..+| ++++|+.+++++++. .
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG--------KAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999988 3444 78899999999887 499999999999998 6
Q ss_pred CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-------hcCCChhHHhhHHHHHHHhhc------HHH
Q 020060 171 VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-------RMKSNPDLYFNCATVNKYLEN------YER 237 (331)
Q Consensus 171 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~la~~~~~~g~------~~~ 237 (331)
|....++..+|.++... |++++|+.++++++... ..+.....+..++..+...+. +.+
T Consensus 166 ~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQ---------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 77788999999999999 99999999999999741 112333444555544443322 223
Q ss_pred HHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 238 ALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 238 A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+..+++......|..... ..++.++...|++++|...+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333222222333333 5566666666666666666665554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=131.98 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=67.8
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC
Q 020060 93 KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 171 (331)
.++|+.+.++..+|..|+..|+|++|+.+|+++++++|.+ .++.++|.++..+|+ +++|+..++++++++|
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--------FQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--------HHHHHHHHHHHHHhhh
Confidence 3455555555555666666666666666666666555555 555555555555542 5556666666666566
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
+++.+|+.+|.++..+ |++++|+..|+++++.+ |+++.++.+++.+
T Consensus 79 ~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 124 (126)
T 4gco_A 79 KFIKGYIRKAACLVAM---------REWSKAQRAYEDALQVD--PSNEEAREGVRNC 124 (126)
T ss_dssp TCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHC--cCCHHHHHHHHHh
Confidence 5555666666666555 56666666666665533 5555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=158.78 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=179.2
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhCChhHHHHHHHHHHhc------CC
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA----DAWLCLGSCIWKKGDLPAAKNCFNLALSK------GP 130 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~ 130 (331)
+..+..++.+|..+...|+| ++|+.+|+++++..|+++ .++..+|.+|...|++++|+.+|++++++ .|
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDC-RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 46677788999999999998 999999999999999986 58999999999999999999999999987 33
Q ss_pred Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhhhhhcCCCChhh-----
Q 020060 131 NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTSFFVTGSWDHSK----- 198 (331)
Q Consensus 131 ~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----- 198 (331)
.. .++..+|.++..+| ++++|+.+++++++. .|....++..+|.++... |+
T Consensus 124 ~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~~~ 186 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMG--------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK---------GKHLGQR 186 (411)
T ss_dssp HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc---------Ccccccc
Confidence 33 78889999999887 499999999999987 556677999999999999 99
Q ss_pred ------------HHHHHHHHHHHHhchh----cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H-
Q 020060 199 ------------LLQSLKAYQNAEKDER----MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T- 255 (331)
Q Consensus 199 ------------~~~A~~~~~~al~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~- 255 (331)
+++|+.++++++.... .+....++.++|.++...|++++|+.+|++++.+.+.... .
T Consensus 187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (411)
T 4a1s_A 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266 (411)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999987421 1233457999999999999999999999999998775443 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 256 EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..++.++...|++++|+..+.++..+.+.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=168.38 Aligned_cols=155 Identities=9% Similarity=0.000 Sum_probs=143.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+....+++.+|.++...|++ ++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++ .++.+
T Consensus 428 ~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 428 DFSESVELPLMEVRALLDLGDV-AKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp CCTTCSHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred ccccchhHHHHHHHHHHhcCCH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3356678899999999999998 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++..+| ++++ +..|+++++++|+++.+|+++|.++... |++++|+..|+++++.+ |.
T Consensus 507 lg~~~~~~g--------~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~--P~ 566 (681)
T 2pzi_A 507 LAATAELAG--------NTDE-HKFYQTVWSTNDGVISAAFGLARARSAE---------GDRVGAVRTLDEVPPTS--RH 566 (681)
T ss_dssp HHHHHHHHT--------CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHTSCTTS--TT
T ss_pred HHHHHHHcC--------ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc---------CCHHHHHHHHHhhcccC--cc
Confidence 999999887 4999 9999999999999999999999999999 99999999999999965 99
Q ss_pred ChhHHhhHHHHHHHhhc
Q 020060 218 NPDLYFNCATVNKYLEN 234 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~ 234 (331)
++.+++++|.++...++
T Consensus 567 ~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHccCC
Confidence 99999999999977555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-19 Score=129.40 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=110.5
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
.|..+..+..+|..++..|+| ++|+.+|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|++ .+++.+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDY-PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 357788999999999999998 999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
|.++..+| ++++|+..|+++++++|+++.++..++.++
T Consensus 88 g~~~~~~~--------~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMR--------EWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999987 499999999999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=148.88 Aligned_cols=204 Identities=16% Similarity=0.161 Sum_probs=174.0
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC------Ch
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP------NK 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~ 132 (331)
....++..|..+...|++ ++|+.+|+++++..|++ ..++..+|.++...|++++|+.++++++.+.+ ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 355678899999999998 99999999999999998 47889999999999999999999999987732 22
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch------hHHHHHHHHHhhhhhcCCCChhh-------
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN------SWYNLGNACLTSFFVTGSWDHSK------- 198 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~------- 198 (331)
.++..+|.++...| ++++|+.+++++++..|.... ++..+|.++... |+
T Consensus 83 ~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~ 145 (338)
T 3ro2_A 83 AKASGNLGNTLKVLG--------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK---------GKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------HHTSSSSSC
T ss_pred HHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc---------Ccccccchh
Confidence 67888999999887 499999999999988665543 889999999999 99
Q ss_pred -------------HHHHHHHHHHHHhchh----cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H
Q 020060 199 -------------LLQSLKAYQNAEKDER----MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T 255 (331)
Q Consensus 199 -------------~~~A~~~~~~al~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~ 255 (331)
+++|+..+++++.... .+....++.++|.++...|++++|..++++++.+.+.... .
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 225 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999987421 1333457999999999999999999999999988654332 4
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..++.++...|++++|+..+.++..+.+.
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=147.53 Aligned_cols=165 Identities=12% Similarity=-0.020 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|.....+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...| ++++|+..+++++..+|+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--------~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN--------RSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHTTSCGGGCSHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC--------CHHHHHHHHHhCchhhcchH
Confidence 5555666666666666666666666666666666655 55666666666554 36666666666666666444
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC--
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL-- 252 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 252 (331)
..+...+..+... ++.++|+..+++++... |+++.+++++|.++...|++++|+..|.+++..+|++
T Consensus 186 ~~~~~~~~~l~~~---------~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 186 YQGLVAQIELLXQ---------AADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp HHHHHHHHHHHHH---------HTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHhh---------cccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 4444444445544 55555666666666533 6666666666666666666666666666666666655
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 253 NAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
..+ ..++.++..+|+.++++..|.++.
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 334 556666666666666665555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=160.53 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=134.4
Q ss_pred ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHH
Q 020060 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
.|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++ .++..+|.++..+| +
T Consensus 2 ~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~ 72 (568)
T 2vsy_A 2 TADG-PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ--------R 72 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT--------C
T ss_pred CccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------C
Confidence 4776 999999999999999999999999999999999999999999999999998 89999999999887 4
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh---
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL--- 232 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--- 232 (331)
+++|+.+++++++.+|+++.++..+|.++... |++++|+..|+++++.. |.++.++.++|.++..+
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDA---------GQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999 99999999999999955 99999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCcHH
Q 020060 233 ENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 233 g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|++++|...|++++..+|++...
T Consensus 142 g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp TTHHHHHHHHHHHHHHTCCCSCH
T ss_pred ccHHHHHHHHHHHHhcCCcccCh
Confidence 99999999999999999987654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=146.34 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=182.5
Q ss_pred chhhHHHHHhhhhhhccc--ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHh---CChhHHHHHHHHHHhcCCC
Q 020060 61 TQRATYEYLKGKILDVVP--EYRKDAEDHLSKAVKLNPSLADAWLCLGSCI----WKK---GDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~~~ 131 (331)
+....+|+.+|.++...+ ++ ++++.++.+++..+|++..+|+.++.++ ... +++++++.++.++++.+|.
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~-~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNL-YDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCH-HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHHHcccccH-HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 466778999999999999 87 9999999999999999999999999999 666 7899999999999999999
Q ss_pred h-HHHhhHHHHHHHhccCchhHHHHHH--HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh------HHHH
Q 020060 132 K-KILCQLSMLERSMAQGSENQAEIVE--ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK------LLQS 202 (331)
Q Consensus 132 ~-~~~~~l~~~~~~~g~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~A 202 (331)
+ .+|...+.++..+|. ++ ++++++.++++.+|.+..+|.+.+.++... +. ++++
T Consensus 143 ny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l---------~~~~~~~~~~eE 205 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK---------KHLATDNTIDEE 205 (306)
T ss_dssp CHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS---------GGGCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------cccchhhhHHHH
Confidence 9 999999999998874 66 999999999999999999999999999887 65 9999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH-HHHHHHHHHhcC---CCCcHH-HHHHHHHHHHHHHHHHHHhhhh
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER-ALSGFEASALKD---PSLNAT-EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---~~~~~~-~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
++++.+++..+ |.|..+|+.++.++...|+..+ ...++.+++.++ |.+..+ ..++.++...|+.++|++.+..
T Consensus 206 l~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999955 9999999999999999998666 445777777776 777777 9999999999999999999988
Q ss_pred hhh-HHHH
Q 020060 278 TKR-VASL 284 (331)
Q Consensus 278 a~~-l~~~ 284 (331)
+.. ++|+
T Consensus 284 l~~~~Dpi 291 (306)
T 3dra_A 284 LKSKYNPI 291 (306)
T ss_dssp HHHTTCGG
T ss_pred HHhccChH
Confidence 774 5554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=147.48 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=132.9
Q ss_pred cccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--------CCh-HHHhhH
Q 020060 76 VVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--------PNK-KILCQL 138 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~-~~~~~l 138 (331)
..|++ ++|+.+|++++++ .|..+.++..+|.++...|++++|+.+|++++++. |.. .++..+
T Consensus 13 ~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPR-GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCS-SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45665 6777777777763 36678899999999999999999999999999873 333 788899
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITL--------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
|.++...| ++++|+.++++++.. +|....++..+|.++... |++++|+.++++++
T Consensus 92 ~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 154 (283)
T 3edt_B 92 AVLYGKRG--------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ---------GKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHTTT--------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHH
T ss_pred HHHHHHhc--------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Confidence 99999887 499999999999987 467788999999999998 99999999999999
Q ss_pred hc------hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 211 KD------ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 211 ~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
.. ...|....++.++|.++..+|++++|+.+|++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 84 1135556779999999999999999999999999873
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=150.72 Aligned_cols=224 Identities=11% Similarity=0.027 Sum_probs=179.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS-------LADAWLCLGSCIWKK 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~ 112 (331)
..+.+|+.++..+. +++..+.+++.+|.++...|++ +.|+.++.+++.+.+. .+.++..+|.+|...
T Consensus 122 ~~~~~al~~~~~~~-----~~~~~a~~~~~lg~~y~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 122 GYYREAEKELPFVS-----DDIEKAEFHFKVAEAYYHMKQT-HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp HHHHHHHTTGGGCC-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCC-----ChHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence 33444444444443 4567889999999999999997 9999999999987442 356889999999999
Q ss_pred CChhHHHHHHHHHHhcCC---Ch----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-----CCCCCchhHHHH
Q 020060 113 GDLPAAKNCFNLALSKGP---NK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-----LDVKDGNSWYNL 180 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~---~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l 180 (331)
|++++|+.+|++++++.+ +. .++.++|.++..+| ++++|+.++++++. .+|..+.++..+
T Consensus 196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 999999999999998743 21 57888999999887 49999999999999 788888899999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc---CCChhHHhhHHHHHHHhhc---HHHHHHHHHHHHhcCCCCcH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM---KSNPDLYFNCATVNKYLEN---YERALSGFEASALKDPSLNA 254 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~ 254 (331)
|.++... |++++|+.++++++..... +.....+..++.++...++ +.+|+.++++. ...|....
T Consensus 268 a~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~ 337 (378)
T 3q15_A 268 SWTLCKA---------GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEA 337 (378)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHH
Confidence 9999999 9999999999999984321 2223446778888888888 88888888872 22222233
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~ 287 (331)
. ..+|.++...|++++|...+.++..+...+..
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4 88999999999999999999999988776544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-19 Score=134.41 Aligned_cols=115 Identities=11% Similarity=-0.015 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
..+++++.++|++ .+++.+|.++...| ++++|+..|++++.++|+++.+|+++|.++... |+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~---------g~ 85 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKG--------RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK---------EQ 85 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TC
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------cc
Confidence 4456666667766 66777777777665 377777777777777777777777777777777 77
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+++|+.+|+++++.+ |+++.+|+++|.++..+|++++|+.+|++++.+.|+.+
T Consensus 86 ~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777744 77777777777777777777777777777777777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=145.55 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=151.1
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHh-C
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKK-G 113 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g 113 (331)
.+.+++.+..... ++...+.++..+|.+|...|++ ++|+.+|++++.+.|.. +.++.++|.+|... |
T Consensus 59 ~~~~al~~~~~~~-----~~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 59 SFLKAADYQKKAG-----NEDEAGNTYVEAYKCFKSGGNS-VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp HHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444332 4456688999999999999998 99999999999987643 56899999999996 9
Q ss_pred ChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch-------hHHH
Q 020060 114 DLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN-------SWYN 179 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~ 179 (331)
++++|+.+|++++++.|.. .++.++|.++..+| ++++|+.+|++++++.|+++. ++.+
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 9999999999999998743 46788999999887 499999999999999988764 5788
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----HhhHHHHHH--HhhcHHHHHHHHHHHHhcCCCC
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----YFNCATVNK--YLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+|.++..+ |++++|+.+|++++... |..+.. +..++..+. ..+++++|+..|++++.++|..
T Consensus 205 lg~~~~~~---------g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 205 KGLCQLAA---------TDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHc---------CCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 99999999 99999999999999855 766543 445566554 4578999999999999998876
Q ss_pred cH
Q 020060 253 NA 254 (331)
Q Consensus 253 ~~ 254 (331)
..
T Consensus 274 ~~ 275 (292)
T 1qqe_A 274 IT 275 (292)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-17 Score=134.18 Aligned_cols=172 Identities=9% Similarity=-0.002 Sum_probs=145.3
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+.+++.+|..+...|++++|+..|+++++..|.+ .+++.+|.++...| ++++|+..|+++++.+|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--------DLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCC
Confidence 46789999999999999999999999999999876 68999999999887 4999999999999999998
Q ss_pred ch---hHHHHHHHHHhhh---------hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH-----------------hh
Q 020060 174 GN---SWYNLGNACLTSF---------FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY-----------------FN 224 (331)
Q Consensus 174 ~~---~~~~l~~~~~~~~---------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------------~~ 224 (331)
+. +++.+|.++.... ......+.|++++|+..|+++++.. |+++.++ ..
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 75 7899999987520 0000012389999999999999954 8887654 67
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
+|.++...|++++|+..|+++++..|+++. + ..++.++..+|+.++|++.+.++.
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 899999999999999999999999999863 4 888999999999999987776544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=152.67 Aligned_cols=196 Identities=13% Similarity=0.102 Sum_probs=157.7
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhc---CC---CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh------
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKL---NP---SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK------ 132 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 132 (331)
.+++.+|..+...|+| ++|+.+|++++.+ .+ ..+.++..+|.+|...|++++|+.++.+++++.+..
T Consensus 104 ~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 104 YFNFFRGMYELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 3566699999999998 9999999999997 23 356899999999999999999999999999885432
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG------NSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
.++..+|.++..+| ++++|+.++++++++.+... .++.++|.+|... |++++|+.
T Consensus 183 ~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------g~~~~A~~ 245 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLK--------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ---------SQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC---------CCHHHHHH
Confidence 57888999999887 49999999999998866543 4899999999999 99999999
Q ss_pred HHHHHHhch----hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC-----CcHH-HHHHHHHHHHHH---HHHH
Q 020060 205 AYQNAEKDE----RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS-----LNAT-EEVQMMVNLLDK---IENL 271 (331)
Q Consensus 205 ~~~~al~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~-~~l~~~~~~l~~---~~~a 271 (331)
+|++++... ..|..+.++.++|.++..+|++++|..++++++.+.+. .... ..++.++...++ +.+|
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 325 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999732 11555677999999999999999999999999998543 2222 445555555554 4455
Q ss_pred HHhhhhh
Q 020060 272 LKGHAKT 278 (331)
Q Consensus 272 ~~~~~~a 278 (331)
+..+.+.
T Consensus 326 l~~~~~~ 332 (383)
T 3ulq_A 326 FDFLESK 332 (383)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 5444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=145.51 Aligned_cols=174 Identities=21% Similarity=0.188 Sum_probs=152.7
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-- 129 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 129 (331)
.+....++..+|.++...|++ ++|+.++++++.. .|....++..+|.++...|++++|+.+|++++++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKY-KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 457788999999999999998 9999999999987 35667899999999999999999999999999874
Q ss_pred ------CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 130 ------PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------DVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 130 ------~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
|.. .++..+|.++...| ++++|+.+++++++. .|....++..+|.++...
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------- 208 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQG--------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ------- 208 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH-------
T ss_pred hcCCCChHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-------
Confidence 333 77888999999887 499999999999987 677778999999999999
Q ss_pred ChhhHHHHHHHHHHHHhch-----------------------------------------------hcCCChhHHhhHHH
Q 020060 195 DHSKLLQSLKAYQNAEKDE-----------------------------------------------RMKSNPDLYFNCAT 227 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~-----------------------------------------------~~~~~~~~~~~la~ 227 (331)
|++++|+.++++++... ..|..+.++..+|.
T Consensus 209 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 286 (311)
T 3nf1_A 209 --GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286 (311)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 99999999999999731 12455677999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 228 VNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
++..+|++++|..+|++++++.|+
T Consensus 287 ~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=141.70 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=151.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+.....++.+|..+...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+. ......+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNY-TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 45567788999999999997 999999999999999999999999999999999999999999999999977 4444555
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC-
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN- 218 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~- 218 (331)
..+...+ +.++|+..+++++..+|+++.+++.+|.++... |++++|+..|.++++.+ |++
T Consensus 193 ~~l~~~~--------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~---------g~~~~A~~~l~~~l~~~--p~~~ 253 (287)
T 3qou_A 193 IELLXQA--------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV---------GRNEEALELLFGHLRXD--LTAA 253 (287)
T ss_dssp HHHHHHH--------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTGG
T ss_pred HHHHhhc--------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhcc--cccc
Confidence 5565443 478899999999999999999999999999999 99999999999999955 887
Q ss_pred -hhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 219 -PDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 219 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
+.++.++|.++..+|+.++|...|++++.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 88999999999999999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=134.34 Aligned_cols=166 Identities=11% Similarity=-0.030 Sum_probs=142.3
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|...+.+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...| ++++|+..+++++..+| ++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--------~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETK--------QFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--------CHHHHHHHHTTCCGGGC-CH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--------CHHHHHHHHHHhhhccC-Ch
Confidence 4445678899999999999999999999999999999 99999999999887 49999999999999999 77
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC--
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL-- 252 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 252 (331)
..+..++.+.... .+...+|+..++++++.. |+++.+++++|.++...|++++|+..|+++++.+|+.
T Consensus 74 ~~~~~~~~~~~~~--------~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 74 SYKSLIAKLELHQ--------QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHHHHHHHHHHH--------HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred HHHHHHHHHHHHh--------hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 7666666553321 023345899999999955 9999999999999999999999999999999999986
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 253 NAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
... ..++.++..+|+.++|+..|.+++.
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 335 8999999999999999999987753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-17 Score=148.28 Aligned_cols=202 Identities=10% Similarity=0.031 Sum_probs=174.2
Q ss_pred hhhHHHHHhhhhhhc-------ccccHH-------HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 62 QRATYEYLKGKILDV-------VPEYRK-------DAEDHLSKAVK-LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~-------~~~~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
..+.+|+.+|..+.. .|++ + +|+..|+++++ ..|++..+|..+|.++...|++++|...|++++
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~-~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDM-NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccch-hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 457889999998875 7887 6 89999999997 899999999999999999999999999999999
Q ss_pred hcCCCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH-HhhhhhcCCCChhhHHHHH
Q 020060 127 SKGPNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC-LTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 127 ~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~A~ 203 (331)
++.|.+ .+|..++.++...| ++++|..+|+++++..|.....+...+.+. ... |++++|.
T Consensus 349 ~~~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~---------~~~~~A~ 411 (530)
T 2ooe_A 349 AIEDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS---------KDKSVAF 411 (530)
T ss_dssp HSSSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT---------CCHHHHH
T ss_pred CccccCchHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc---------CChhHHH
Confidence 999986 47888999888664 699999999999999888777776666553 345 8999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH----H-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA----T-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
..|+++++.. |+++.+|..++.++...|++++|...|++++...|.++. . ..........|+.+.+.+.+.++
T Consensus 412 ~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999965 999999999999999999999999999999998776654 3 44456667778888888888888
Q ss_pred hhHHH
Q 020060 279 KRVAS 283 (331)
Q Consensus 279 ~~l~~ 283 (331)
.+..+
T Consensus 490 ~~~~p 494 (530)
T 2ooe_A 490 FTAFR 494 (530)
T ss_dssp HHHTH
T ss_pred HHHCc
Confidence 77766
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=132.75 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
..+++++.++|+++.+++.+|.++...|++++|+.+|++++.++|++ .+|.++|.++..+| ++++|+.+|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g--------~~~~Ai~~~~ 94 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE--------QFQQAADLYA 94 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--------cHHHHHHHHH
Confidence 34566777788888888888888888888888888888888888887 77888888888776 4888888888
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 165 EAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 165 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
++++++|+++.+|+++|.+|..+ |++++|+.+|+++++.. |+.+
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~l---------g~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRL---------KAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCHH
Confidence 88888888888888888888887 88888888888888744 5543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=139.41 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=155.7
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+..++.+|..+...|+| ++|+.+|++++..+|+++.++.++|.+|...|++++|+..++++++++|++ .+++.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788999999999998 999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+..+| ++++|+..|+++++++|+++..+.......... .++......... ..+.++.+
T Consensus 82 ~~~~g--------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~i 139 (281)
T 2c2l_A 82 QLEME--------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------------AKKKRWNSIEER--RIHQESEL 139 (281)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------------HHHHHHHHHHHT--CCCCCCHH
T ss_pred HHHcC--------CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------------HHHHHHHHHHHH--HHhhhHHH
Confidence 99887 499999999999999998754443333322222 122222222223 34788888
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH-HHHHHHHHhhhhhhh
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL-DKIENLLKGHAKTKR 280 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l-~~~~~a~~~~~~a~~ 280 (331)
...++.++ .|++++|+..+++++..+|++... ..++.++... +.+.++...|.++..
T Consensus 140 ~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 140 HSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777765 799999999999999999988776 6666666665 666777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=149.83 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhh------------cccccHHHHHHHHHHHHhcCCCcHHHHHHH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILD------------VVPEYRKDAEDHLSKAVKLNPSLADAWLCL 105 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (331)
+...+++++..+..-....-.-++.. .+...|.... .++++ ++|+..+++++...|..+.++..+
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~-~~A~~~~~~a~~~~p~~a~~~~~~ 153 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSF-EKAKESWEMNSEEKLEQSTIVKER 153 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEE-ECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeec-ccccchhcCCHHHHHHHHHHHHHH
Confidence 35678888888876110000011221 3444554432 56787 889999999999999999999999
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCh----------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 106 GSCIWKKGDLPAAKNCFNLALSKGPNK----------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
|.+++..|++++|+.+|++++.+.|.+ .++.++|.++..+| ++++|+.++++++++
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--------AFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh
Confidence 999999999999999999999999987 34444444444443 244444444444444
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHH
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERA 238 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 238 (331)
+|+++.+++++|.+|..+ |++++|+..|+++++.. |.++.++.++|.++..+|++++|
T Consensus 226 ~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAV---------NDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 44444444444444422 44444444444444444444444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=145.21 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=146.3
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP------SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
...+++.+|..+...|+| ++|+.+|++++.+.+ ..+.++..+|.+|...|+++.|+.++.+++++.+..
T Consensus 100 ~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEY-VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 344678899999999998 999999999998742 346789999999999999999999999999875431
Q ss_pred ----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC------CchhHHHHHHHHHhhhhhcCCCChhhHHHH
Q 020060 133 ----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK------DGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 133 ----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A 202 (331)
.++..+|.++..+| ++++|+.++++++++.+. ...++.++|.+|... |++++|
T Consensus 179 ~~~~~~~~~lg~~y~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------~~~~~A 241 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFK--------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS---------GDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHH
T ss_pred hhHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---------CCHHHH
Confidence 56778999999887 499999999999986432 245788999999999 999999
Q ss_pred HHHHHHHHh-----chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 203 LKAYQNAEK-----DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 203 ~~~~~~al~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
+.+|++++. .. |..+.++.++|.++..+|++++|..++++++.+.+.
T Consensus 242 ~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 242 VEHFQKAAKVSREKVP--DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999998 43 666788999999999999999999999999998654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=133.85 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=175.9
Q ss_pred HHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccc----------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 44 LALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPE----------YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 44 ~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
+|+...+.+.. ..|....+|+.++.++...+. + ++++.++..++..+|.+..+|...+.++...+
T Consensus 48 eaL~~t~~~L~----~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l-~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 48 SVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALV-KAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHT----TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHH----HCchhHHHHHHHHHHHHHhcccccchhhhHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence 45555554443 334667889999998887765 5 78999999999999999999999999999999
Q ss_pred C--hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhh
Q 020060 114 D--LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 114 ~--~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 190 (331)
+ +++++.++.++++.+|.+ .+|...+.++..+|. .++++++++.++++.+|.+..+|++++.++....-.
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 4 899999999999999999 999999999998873 258999999999999999999999999998765211
Q ss_pred -----cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-----------hcHHHHHHHHHHHHhcCCCCcH
Q 020060 191 -----TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-----------ENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 191 -----~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+....+.++++++++.+++... |+|..+|+.+..++... +.+++++.++.+.+++.|++.-
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 11122367999999999999955 99999998776666555 6789999999999999999855
Q ss_pred H-HHHHHHHHH---HHHHHHHHHhhhhhhhHHHH
Q 020060 255 T-EEVQMMVNL---LDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 255 ~-~~l~~~~~~---l~~~~~a~~~~~~a~~l~~~ 284 (331)
. ..+..+... .+..++....+.+..+++|+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 4 333322222 23333444445554444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=135.42 Aligned_cols=186 Identities=11% Similarity=-0.009 Sum_probs=165.5
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--ChhHHHHHHHHHHhcCCCh-HHHhhHHHHH----H
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG--DLPAAKNCFNLALSKGPNK-KILCQLSMLE----R 143 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~-~~~~~l~~~~----~ 143 (331)
-......|.+.++|+.++.++|.++|++..+|+..|.++...| ++++++.++.+++..+|++ .+|...+.++ .
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 3344456666589999999999999999999999999999999 9999999999999999999 9999999999 5
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH--HHHHHHHHHHhchhcCCChhH
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL--QSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~ 221 (331)
.++. .+++++++.++.++++.+|++..+|.+.+.++... |.++ +++.++.+++..+ |.|..+
T Consensus 119 ~l~~-----~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l---------~~~~~~~EL~~~~~~i~~d--~~N~sA 182 (306)
T 3dra_A 119 LNNN-----DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF---------DLHNDAKELSFVDKVIDTD--LKNNSA 182 (306)
T ss_dssp HTTT-----CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCTTCHHHHHHHHHHHHHC--TTCHHH
T ss_pred hccc-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------cccChHHHHHHHHHHHHhC--CCCHHH
Confidence 4410 02488999999999999999999999999999988 8888 9999999999955 999999
Q ss_pred HhhHHHHHHHhhc------HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 222 YFNCATVNKYLEN------YERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 222 ~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
|.+.+.+....+. +++++.++.+++..+|++..+ ..++.++...|+..+++
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 9999999999988 999999999999999999999 88888888887754444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-17 Score=139.41 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=147.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.......+...|.++...|+| ++|+.+|.+++.+.+.. +.++.++|.+|...|++++|+.+|++++++.+..
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQL-EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 3445566677778999999998 99999999999986532 5689999999999999999999999999885432
Q ss_pred -------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 133 -------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++.++|.++.. | ++++|+.+|++++++.|.. ..++.++|.++..+ |++
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g--------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~ 171 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-L--------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ---------QKF 171 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCH
T ss_pred CCHHHHHHHHHHHHHHHHc-C--------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc---------CCH
Confidence 567778888876 6 5999999999999987654 56889999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCC------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 200 LQSLKAYQNAEKDERMKSN------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
++|+.+|++++... +.+ ...+.++|.++..+|++++|+.+|++++ ++|+...
T Consensus 172 ~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 172 DEAAASLQKEKSMY--KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHHHH--HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 99999999999854 433 2468899999999999999999999999 9997654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-19 Score=153.20 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=163.5
Q ss_pred hhhhhcccccHHHHHHHHHH----HHhcCCCcHHHHHHHHHHHH------------HhCChhHHHHHHHHHHhcCCCh-H
Q 020060 71 GKILDVVPEYRKDAEDHLSK----AVKLNPSLADAWLCLGSCIW------------KKGDLPAAKNCFNLALSKGPNK-K 133 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~----al~~~p~~~~~~~~lg~~~~------------~~g~~~~A~~~~~~al~~~~~~-~ 133 (331)
|.++...+.+ ++|+..+.. ++.+.|.. +|..+|.... ..+++++|+..|++++...|.. .
T Consensus 72 g~~~~~~~~~-e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 72 GENLDLPYGL-ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp GGGGTCCHHH-HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred CCccccchHH-HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 4555556776 899999999 89999987 5555554432 5677889999999999888887 8
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---------------chhHHHHHHHHHhhhhhcCCCChhh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---------------GNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+..+|.++...| ++++|+..|++++.++|.+ ..+|.++|.++... |+
T Consensus 149 ~~~~~g~~~~~~g--------~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------g~ 211 (336)
T 1p5q_A 149 IVKERGTVYFKEG--------KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL---------QA 211 (336)
T ss_dssp HHHHHHHHHHHHT--------CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHHHHHCC--------CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc---------CC
Confidence 9999999999887 5999999999999999998 58999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH-Hhhh
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL-KGHA 276 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~-~~~~ 276 (331)
+++|+.+|+++++.. |.++.+++++|.++..+|++++|+.+|+++++++|++... ..++.++..++++.++. +.|.
T Consensus 212 ~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 212 FSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999965 9999999999999999999999999999999999999988 99999999999999985 4444
Q ss_pred hhh
Q 020060 277 KTK 279 (331)
Q Consensus 277 ~a~ 279 (331)
+..
T Consensus 290 ~~~ 292 (336)
T 1p5q_A 290 NMF 292 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=126.98 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=55.5
Q ss_pred HHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 122 FNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 122 ~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
|++++.++|++ ..++.+|.++...| ++++|+..|++++..+|+++.+|+.+|.++... |+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~ 72 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSG--------XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM---------GQYD 72 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH---------hhHH
Confidence 44444444444 44444444444443 244444444444444454555555555555544 5555
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+|+..|++++... |+++.+++++|.++..+|++++|+.+|++++.++|+++
T Consensus 73 ~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 73 LAIHSYSYGAVMD--IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5555555555432 55555555555555555555555555555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=125.01 Aligned_cols=122 Identities=10% Similarity=0.120 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHH
Q 020060 85 EDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHA 163 (331)
Q Consensus 85 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~ 163 (331)
-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.+ .+|+.+|.++..+| ++++|+.+|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~ 78 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--------QYDLAIHSY 78 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--------hHHHHHHHH
Confidence 345888999999999999999999999999999999999999999988 88999999999887 499999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 164 KEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 164 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
++++.++|+++.+++++|.++... |++++|+..|+++++.. |+++......
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~~~~ 129 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQX---------GELAEAESGLFLAQELI--ANXPEFXELS 129 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--TTCGGGHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHC--cCCCcchHHH
Confidence 999999999999999999999999 99999999999999855 8887664333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-16 Score=131.19 Aligned_cols=191 Identities=11% Similarity=0.107 Sum_probs=167.2
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD----------LPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
..|.+.++|+.++.+++.++|++..+|+..+.+....+. +++++.++..++..+|++ .+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 467776789999999999999999999999999988776 689999999999999999 999999999998
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh-HHHHHHHHHHHHhchhcCCChhHHh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK-LLQSLKAYQNAEKDERMKSNPDLYF 223 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 223 (331)
+|. ..+++++.++.++++.+|.+..+|.+.+.++... |. +++++.++.+++..+ |.|..+|.
T Consensus 121 l~~------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l---------~~~~~eel~~~~~~I~~~--p~N~SAW~ 183 (331)
T 3dss_A 121 LPE------PNWARELELCARFLEADERNFHCWDYRRFVAAQA---------AVAPAEELAFTDSLITRN--FSNYSSWH 183 (331)
T ss_dssp CSS------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHC--SCCHHHHH
T ss_pred cCc------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------CcCHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 872 1388999999999999999999999999999988 77 699999999999955 99999999
Q ss_pred hHHHHHHHh--------------hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH-----------HHHHHHHHhhhh
Q 020060 224 NCATVNKYL--------------ENYERALSGFEASALKDPSLNAT-EEVQMMVNLL-----------DKIENLLKGHAK 277 (331)
Q Consensus 224 ~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l-----------~~~~~a~~~~~~ 277 (331)
+++.++... +.+++++.++.+++..+|++..+ ..+.-++... +.++++++.+.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 999999988 77999999999999999999998 4444444333 667777777777
Q ss_pred hhhHHH
Q 020060 278 TKRVAS 283 (331)
Q Consensus 278 a~~l~~ 283 (331)
...+.|
T Consensus 264 lle~~p 269 (331)
T 3dss_A 264 LQELEP 269 (331)
T ss_dssp HHHHCT
T ss_pred HHhhCc
Confidence 776654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=115.05 Aligned_cols=133 Identities=24% Similarity=0.439 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
.+++.+|.++...|++++|+..++++++..|.+ ..+..+|.++...| ++++|+..+++++...|.++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------DYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHCCCchHHHH
Confidence 456677777777777777777777777777766 66666777777555 377777777777777777777777
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
.+|.++... |++++|+..+++++... |.++.++..+|.++...|++++|..+|++++..+|+
T Consensus 74 ~l~~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 74 NLGNAYYKQ---------GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHTT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHh---------cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777 78888888888877743 777777788888888888888888888888777775
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=121.10 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
.|++++.++|++..+++.+|.++...|++++|+..|++++..+|++ .+|+.+|.++..+| ++++|+.+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--------LYEQALQSYSY 77 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555 45555555555444 25555555555
Q ss_pred HhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 166 AITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 166 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
++.++|+++.+++.+|.++... |++++|+..|++++... |.++...
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~ 123 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQL---------GDLDGAESGFYSARALA--AAQPAHE 123 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HTCGGGH
T ss_pred HHhcCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCcchH
Confidence 5555555555555555555555 55555555555555533 4444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=136.68 Aligned_cols=214 Identities=8% Similarity=-0.026 Sum_probs=177.3
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHhCChhHHHHHHHHHHhcCCCh-HH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCL-------GSCIWKKGDLPAAKNCFNLALSKGPNK-KI 134 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 134 (331)
....++..|.-+ ..+++ ..|..+|.+++.++|+..++|.++ +.++...+...+++..+++.+.+.|.. .+
T Consensus 6 ~~~~~~~~~~~~-~~~d~-~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSE-ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHH-TTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHhcc-cCCCH-HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 344555666665 47886 999999999999999999999999 899999999999999999999999887 44
Q ss_pred Hhh---------------------HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 135 LCQ---------------------LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 135 ~~~---------------------l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
++. ++.++...| ++++|.+.|...+...|.+. .++.+|.++...
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g--------~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~------ 148 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQG--------NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA------ 148 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHT--------CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT------
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc------
Confidence 444 567777665 59999999999999999888 999999999999
Q ss_pred CChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC--CC-CcHH-HHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLENYERALSGFEASALKD--PS-LNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~-~~l~~~~~~l~~~ 268 (331)
+++++|+..|+.+.... .|. ...+++++|.++..+|++++|+.+|++++.-. |. .... ..++.++..+|+.
T Consensus 149 ---~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 149 ---ERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp ---TCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred ---CCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 99999999999887521 111 13579999999999999999999999998644 55 3345 9999999999999
Q ss_pred HHHHHhhhhhhhHHHHHhhccccccCCCcc
Q 020060 269 ENLLKGHAKTKRVASLASSLAVVKLSSSHK 298 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~~~~~~~~~~~~~~ 298 (331)
++|...+.++....|. ......-.+++|.
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAALKDPSYR 253 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHHhCCCCC
Confidence 9999999999988776 4444444455553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-17 Score=121.19 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
-..|++++.++|++ ..++.+|.++...| ++++|+..|++++..+|+++.+|..+|.++... |
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g 66 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAG--------KWDDAQKIFQALCMLDHYDARYFLGLGACRQSL---------G 66 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------T
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH---------h
Confidence 35678889999988 88999999999887 499999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~ 268 (331)
++++|+..|++++... |.++.+++++|.++..+|++++|+.+|++++.++|+++.. .....+...++.+
T Consensus 67 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 67 LYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp CHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999955 9999999999999999999999999999999999988765 4444444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=147.23 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=127.1
Q ss_pred hCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhh
Q 020060 112 KGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 112 ~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 190 (331)
.|++++|+.+|+++++.+|++ .++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--- 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG--------DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ--- 70 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT---
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---
Confidence 478999999999999999998 89999999999887 499999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH---H
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL---D 266 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l---~ 266 (331)
|++++|+..|+++++.. |.++.+++++|.++..+|++++|+.+|+++++++|++... ..++.++..+ |
T Consensus 71 ------g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 71 ------QRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp ------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT
T ss_pred ------CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999999955 9999999999999999999999999999999999999988 9999999999 9
Q ss_pred HHHHHHHhhhhhhhHHH
Q 020060 267 KIENLLKGHAKTKRVAS 283 (331)
Q Consensus 267 ~~~~a~~~~~~a~~l~~ 283 (331)
++++|...+.++.+..+
T Consensus 143 ~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp THHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhcCC
Confidence 99999999999887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=140.46 Aligned_cols=180 Identities=11% Similarity=0.100 Sum_probs=163.0
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD----------LPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
....|++.++|+..+.+++..+|++..+|+.++.++...|+ +++++.++.++++.+|++ .+|...+.++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556666889999999999999999999999999999998 999999999999999999 9999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh-hHHHHHHHHHHHHhchhcCCChhH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS-KLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
..+|. .+++++++++.++++.+|.+..+|.+.+.++... | .++++++++.++++.+ |.+..+
T Consensus 118 ~~l~~------~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l---------~~~~~~el~~~~~~I~~~--p~n~sa 180 (567)
T 1dce_A 118 SRLPE------PNWARELELCARFLEADERNFHCWDYRRFVAAQA---------AVAPAEELAFTDSLITRN--FSNYSS 180 (567)
T ss_dssp HTCSS------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------CCCHHHHHHHHHTTTTTT--CCCHHH
T ss_pred HHccc------ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHC--CCCccH
Confidence 98872 1379999999999999999999999999999988 8 8999999999999965 999999
Q ss_pred HhhHHHHHHHh--------------hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHH
Q 020060 222 YFNCATVNKYL--------------ENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIEN 270 (331)
Q Consensus 222 ~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~ 270 (331)
|+++|.++..+ +.+++|++++.+++.++|++..+ ..++-++...++.++
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999885 78999999999999999999998 777777766665444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=139.57 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCChh-------HHHHHHHHHHh-cCCCh-HHHhhHHHHHHHh
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWK-------KGDLP-------AAKNCFNLALS-KGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~-~~~~~l~~~~~~~ 145 (331)
..++..|++++..+|.++.+|..+|..+.. .|+++ +|+..|+++++ +.|++ ..|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 378899999999999999999999999986 79987 99999999997 78988 8999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDG-NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
| ++++|...|+++++..|.++ .+|..++.++... |++++|...|+++++.. |.+...+..
T Consensus 335 g--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~Al~~~--~~~~~~~~~ 395 (530)
T 2ooe_A 335 M--------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA---------EGIKSGRMIFKKAREDA--RTRHHVYVT 395 (530)
T ss_dssp T--------CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHTCT--TCCTHHHHH
T ss_pred C--------CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcc--CCchHHHHH
Confidence 7 49999999999999999885 6999999999888 99999999999999854 777777777
Q ss_pred HHHH-HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 225 CATV-NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 225 la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.+.+ +...|++++|..+|+++++..|+++.. ..++.++..+|+.++|...|.++...
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6666 346899999999999999999999888 99999999999999999998888754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=125.92 Aligned_cols=170 Identities=15% Similarity=0.072 Sum_probs=100.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC----ChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG----DLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
..+.+++.+|.++...+++ ++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++.+. .+ .+++
T Consensus 16 g~~~a~~~lg~~~~~~~~~-~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a~~ 89 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDY-QKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSGEI 89 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 3455666666666666665 6666666666654 456666666666666 5 666666666666443 23 5666
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV--KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
++|.++..-.. ..+++++|+.+|+++++..| .++.++++||.+|..- ....+++++|+.+|++++..
T Consensus 90 ~Lg~~y~~g~g----~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g-----~g~~~d~~~A~~~~~~A~~~-- 158 (212)
T 3rjv_A 90 VLARVLVNRQA----GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG-----VHGPEDDVKASEYFKGSSSL-- 158 (212)
T ss_dssp HHHHHHTCGGG----SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT-----SSSSCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCC----CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC-----CCCCCCHHHHHHHHHHHHHc--
Confidence 66666654000 01246666666666666665 3466666666666651 00015666666666666642
Q ss_pred cCCChhHHhhHHHHHHHh-h-----cHHHHHHHHHHHHhcC
Q 020060 215 MKSNPDLYFNCATVNKYL-E-----NYERALSGFEASALKD 249 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 249 (331)
+.++.+++++|.+|... | ++++|+.+|+++.+..
T Consensus 159 -~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 159 -SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp -SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 45566666666666543 2 6666666666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=111.92 Aligned_cols=131 Identities=27% Similarity=0.438 Sum_probs=123.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
.+++.+|.++...|++ ++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.+ ..+..+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4678899999999997 999999999999999999999999999999999999999999999999988 78889999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
..| ++++|+..+++++...|.++.++..+|.++... |++++|+..+++++...
T Consensus 81 ~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQG--------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ---------GDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHHS
T ss_pred Hhc--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---------ccHHHHHHHHHHHHccC
Confidence 887 499999999999999999999999999999988 99999999999999743
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=123.04 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQ 161 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~ 161 (331)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. +..+++.+|.++.. +. ...++++|+.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g----~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NP----QQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-ST----TSCCHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CC----CCCCHHHHHH
Confidence 5689999999986 789999999999999999999999999998763 23889999999987 41 1124999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHh----hhhhcCCCChhhHHHHHHHHHHHHhchhcC--CChhHHhhHHHHHHH----
Q 020060 162 HAKEAITLDVKDGNSWYNLGNACLT----SFFVTGSWDHSKLLQSLKAYQNAEKDERMK--SNPDLYFNCATVNKY---- 231 (331)
Q Consensus 162 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~---- 231 (331)
+|+++.+ +.++.++++||.+|.. . +++++|+.+|++++... + .++.+++++|.+|..
T Consensus 75 ~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~---------~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 75 LAEKAVE--AGSKSGEIVLARVLVNRQAGA---------TDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHTCGGGSS---------CCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHcCCCCc---------cCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCC
Confidence 9999975 5789999999999998 8 99999999999999965 7 469999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH-H-----HHHHHHHhhhhhhhHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLL-D-----KIENLLKGHAKTKRVA 282 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l-~-----~~~~a~~~~~~a~~l~ 282 (331)
.+++++|+.+|+++... |.++.+ ..++.++..- + ++.+|+..|.+|.+..
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 89999999999999998 666666 9999988654 3 7899999999888763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=122.46 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
.++.+|..+...|+| ++|+.+|++++ +| ++.+++.+|.+|...|++++|+.+|++++.++|++ .+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~-~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDW-KGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555555555554 55555555553 22 34555555555555555555555555555555554 455555555554
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
+| ++++|+..++++++..|.+.... +... | +. ..|..+.++++
T Consensus 84 ~~--------~~~~A~~~~~~al~~~~~~~~~~------~~~~---------~------------~~--~~~~~~~~~~~ 126 (213)
T 1hh8_A 84 TE--------KYDLAIKDLKEALIQLRGNQLID------YKIL---------G------------LQ--FKLFACEVLYN 126 (213)
T ss_dssp TT--------CHHHHHHHHHHHHHTTTTCSEEE------CGGG---------T------------BC--CEEEHHHHHHH
T ss_pred cc--------cHHHHHHHHHHHHHhCCCccHHH------HHHh---------c------------cc--cCccchHHHHH
Confidence 44 25555555555555554443221 0001 0 01 22445589999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+|.++..+|++++|..+|++++.++|++.
T Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 127 IAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999999999999864
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-15 Score=125.69 Aligned_cols=188 Identities=12% Similarity=0.005 Sum_probs=163.4
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
+....++..+..+....+. .++|+.++.+++.++|++..+|+.++.++...| .+++++.++.+++..+|++ .+|...
T Consensus 51 ~~y~~~~~~~r~~~~~~e~-se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEK-SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3444455555555555555 489999999999999999999999999999999 5999999999999999999 999999
Q ss_pred HHHHHHh-ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH--------HHHHHHHHH
Q 020060 139 SMLERSM-AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL--------QSLKAYQNA 209 (331)
Q Consensus 139 ~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~a 209 (331)
+.++..+ +. ++++++.++.++++.+|++..+|...+.++... |.++ +++++++++
T Consensus 130 ~wlL~~l~~~-------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l---------~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 130 LLLLDRISPQ-------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF---------STLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HHHHHHHCCS-------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH---------HHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------ccccccchhhHHHHHHHHHHH
Confidence 9999987 51 378999999999999999999999999999988 7777 999999999
Q ss_pred HhchhcCCChhHHhhHHHHHHHhhc-------HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 210 EKDERMKSNPDLYFNCATVNKYLEN-------YERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 210 l~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
++.+ |.|..+|.+++.++...+. +++++.++.+++.++|++..+ ..+..++...|+
T Consensus 194 I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 194 LRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9955 9999999999999999886 799999999999999999988 666666655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-15 Score=125.90 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=141.3
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
....+...+..+...|+| ++|+..+.++++..+... ..++.+|.++...|++++|+.+|++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 344566778889999998 999999999999887653 346779999999999999999999999865433
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc---CCCCCc----hhHHHHHHHHHhhhhhcCCCChhhHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT---LDVKDG----NSWYNLGNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~---~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~A 202 (331)
.++..+|.++...| ++++|+.+++++++ ..|++. .+++++|.+|... |++++|
T Consensus 153 ~~~~~~~~lg~~y~~~~--------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~A 215 (293)
T 2qfc_A 153 QNLYIENAIANIYAENG--------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEES 215 (293)
T ss_dssp HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT---------TCHHHH
T ss_pred HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH---------hhHHHH
Confidence 47888999999887 49999999999994 445432 5899999999999 999999
Q ss_pred HHHHHHHHhchhcCC----ChhHHhhHHHHHHHhhcHHHH-HHHHHHHHhcCC
Q 020060 203 LKAYQNAEKDERMKS----NPDLYFNCATVNKYLENYERA-LSGFEASALKDP 250 (331)
Q Consensus 203 ~~~~~~al~~~~~~~----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 250 (331)
+.++++++....... .+.+++++|.++..+|++++| ..+|++++.+..
T Consensus 216 l~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999997532122 257799999999999999999 888999997643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-15 Score=114.83 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=122.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
...+..++.+|.++...|++ ++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.++++.+|.+ .++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35678899999999999998 999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH--HHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA--CLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.++..+| ++++|+.+++++++.+|.++.++..++.+ +... |++++|+..+.++..
T Consensus 89 ~~~~~~~--------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALG--------KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ---------KAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHhc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHcccchHH
Confidence 9999887 49999999999999999999988665555 6666 999999999998875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=112.63 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=108.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..++.+|..+...|+| ++|+.+|.+++.++|+++.+|.++|.++...|++++|+.+|+++++++|++ .+++.+|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDW-PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4567899999999999998 999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCC------CCCchhHHHHHHHHHh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLD------VKDGNSWYNLGNACLT 186 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 186 (331)
++..+| ++++|+..++++++++ |.+..++..++.+...
T Consensus 81 ~~~~~~--------~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVK--------EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHh--------CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999887 4999999999999999 8888888888776643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-15 Score=119.79 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
.+++++|+..+.... .+ .+.+++.+|.++...|++ ++|+.+|++++..+|+++.++..+|.+|...|++++|
T Consensus 19 ~~~~~~A~~~~~~a~-----~~--~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ-----DP--HSRICFNIGCMYTILKNM-TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp TTCHHHHHHHHHTSS-----SC--CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hCCHHHHHHHHHHHc-----CC--ChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHH
Confidence 467788999998874 33 567899999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 119 KNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 119 ~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
+.+|+++++..|.+.... +..+| +...|..+.+++++|.++... |+
T Consensus 91 ~~~~~~al~~~~~~~~~~-----~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~---------g~ 136 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLID-----YKILG--------------------LQFKLFACEVLYNIAFMYAKK---------EE 136 (213)
T ss_dssp HHHHHHHHHTTTTCSEEE-----CGGGT--------------------BCCEEEHHHHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHHHhCCCccHHH-----HHHhc--------------------cccCccchHHHHHHHHHHHHc---------cC
Confidence 999999999999872110 11111 255677788999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
+++|+..|+++++.. |.+. .+..+.|+..+.+....
T Consensus 137 ~~~A~~~~~~al~~~--p~~~------------~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 137 WKKAEEQLALATSMK--SEPR------------HSKIDKAMECVWKQKLY 172 (213)
T ss_dssp HHHHHHHHHHHHTTC--CSGG------------GGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcC--cccc------------cchHHHHHHHHHhcccc
Confidence 999999999999855 7653 24566666666655443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6e-15 Score=113.69 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
+..+..+|.++...|++++|+.+|.++++..|.+ .++..+|.++...| ++++|+..++++++.+|.++.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELDKKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcccHHHH
Confidence 4556666677777777777777777776666665 56666666666554 36666666666666666666666
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH--HHHHhhcHHHHHHHHHHHHh
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT--VNKYLENYERALSGFEASAL 247 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~ 247 (331)
..+|.++... |++++|+.+|++++... |.++.++..++. .+...|++++|+..+.++..
T Consensus 85 ~~~a~~~~~~---------~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMAL---------GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---------ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666 66666666666666633 666655533333 35555666666666655543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-15 Score=126.09 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=137.7
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD------AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----- 132 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 132 (331)
...+...+..+...|+| ++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+..
T Consensus 75 ~~~l~~~i~~~~~~~~y-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHHHHHhhH-HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 34445567788899998 9999999999998776654 34468999999999999999999999875443
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.++.++|.++..+| ++++|+.+++++++. .+....+++++|.+|... |++++|+
T Consensus 154 ~~~~~~~lg~~y~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~A~ 216 (293)
T 3u3w_A 154 NLYIENAIANIYAENG--------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---------hHHHHHH
Confidence 26888999999887 499999999999952 233456889999999999 9999999
Q ss_pred HHHHHHHhchhcCC----ChhHHhhHHHHHHHhh-cHHHHHHHHHHHHhcC
Q 020060 204 KAYQNAEKDERMKS----NPDLYFNCATVNKYLE-NYERALSGFEASALKD 249 (331)
Q Consensus 204 ~~~~~al~~~~~~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 249 (331)
.++++++....... -+.+++++|.++..+| ++++|+.+|++|+.+.
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999998541121 2577999999999999 5799999999999753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-16 Score=120.00 Aligned_cols=131 Identities=12% Similarity=0.172 Sum_probs=96.1
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH-HHHhccC
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML-ERSMAQG 148 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~-~~~~g~~ 148 (331)
+..+...|++ ++|+..+++++..+|.++.+|..+|.+|...|++++|+.+|+++++++|++ .++..+|.+ +...|
T Consensus 17 ~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-- 93 (177)
T 2e2e_A 17 LHQFASQQNP-EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-- 93 (177)
T ss_dssp TCCCC------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--
T ss_pred hhhhhhccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--
Confidence 3445667887 888999999999999888899999999998888888888888888888877 677777777 55554
Q ss_pred chhHHHHH--HHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 149 SENQAEIV--EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 149 ~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
++ ++|+..++++++.+|+++.++..+|.++... |++++|+..|++++... |.++..
T Consensus 94 ------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~ 151 (177)
T 2e2e_A 94 ------QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ---------ANYAQAIELWQKVMDLN--SPRINR 151 (177)
T ss_dssp ------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTC--CTTSCH
T ss_pred ------CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhhC--CCCccH
Confidence 35 7777777777777777777777777777776 77777777777777643 665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-14 Score=132.96 Aligned_cols=196 Identities=14% Similarity=0.104 Sum_probs=87.3
Q ss_pred HHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHHhh
Q 020060 66 YEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKILCQ 137 (331)
Q Consensus 66 ~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 137 (331)
.++.+|.++.. .+++ ++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ...+++.
T Consensus 221 a~~~lg~~y~~g~g~~~~~-~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~ 296 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDY-TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYY 296 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHH
Confidence 44445555543 4454 5555555555443 234455555555554 455555555555554431 1144444
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++...... ..+++++|+..|+++++. .++.+++.+|.+|... + ..+++++|+.+|+++++ ..
T Consensus 297 Lg~~y~~~~~g---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~----g--~~~~~~~A~~~~~~a~~----~~ 361 (490)
T 2xm6_A 297 LAHLYDKGAEG---VAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRL----G--SEEEHKKAVEWFRKAAA----KG 361 (490)
T ss_dssp HHHHHHHCBTT---BCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHS----C--CHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHcCCCC---CcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC----C--CcccHHHHHHHHHHHHH----CC
Confidence 55444433000 001244555555544443 2334444455544442 0 00244455555555443 23
Q ss_pred ChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhhHH
Q 020060 218 NPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 218 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~l~ 282 (331)
++.+++++|.+|.. .+++++|+.+|+++.... ++.+ ..++.++.. .+++.+|...|.+|....
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 44445555555544 445555555555544432 2333 444444444 444444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=116.09 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=110.8
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..++.+|.++...|+| ++|+.+|++++.++|+++.+|..+|.+|...|++++|+.+|+++++++|++ .+++.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEY-SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4457788999999999999998 999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT 186 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 186 (331)
+|.++..+| ++++|+.+|+++++++|+++.+|...+.....
T Consensus 85 lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 85 LGLARFDMA--------DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHcc--------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999887 49999999999999999999988877776554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-14 Score=130.48 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=93.7
Q ss_pred hHHHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHH
Q 020060 64 ATYEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 135 (331)
+.+++.+|.+|.. .+++ ++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..+ ..++
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~ 258 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERND-AISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN-SIAQ 258 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-HHHH
Confidence 3444555555554 4554 5555555555543 234555555555554 4555555555555554321 1444
Q ss_pred hhHHHHHHH----hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 136 CQLSMLERS----MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 136 ~~l~~~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+.+|.++.. .+ ++++|+.+|+++.+. .++.+++.+|.+|...... ..+++++|+.+|+++++
T Consensus 259 ~~lg~~y~~g~~~~~--------d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g----~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 259 FRLGYILEQGLAGAK--------EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG----VAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHHHHHHTTTSSC--------CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT----BCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC--------CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC----CcCCHHHHHHHHHHHHh
Confidence 455555544 22 255555555555443 3444555555555432000 11355555555555554
Q ss_pred chhcCCChhHHhhHHHHHHHhh---cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhh
Q 020060 212 DERMKSNPDLYFNCATVNKYLE---NYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKR 280 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~ 280 (331)
..++.+++++|.+|...| ++++|+.+|+++.+. .++.. ..++.++.. .+++.+|+..+.++.+
T Consensus 325 ----~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 325 ----QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp ----TTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 344455555555555433 555555555555544 23333 555555544 4555555555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=117.28 Aligned_cols=128 Identities=11% Similarity=0.043 Sum_probs=115.3
Q ss_pred HHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHh
Q 020060 109 IWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA-CLT 186 (331)
Q Consensus 109 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~ 186 (331)
+...|++++|+..++++++.+|.+ .++..+|.++...| ++++|+.+|+++++.+|+++.++..+|.+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN--------DYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999998 89999999999887 49999999999999999999999999999 777
Q ss_pred hhhhcCCCChhhH--HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 187 SFFVTGSWDHSKL--LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 187 ~~~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
. |++ ++|+..+++++... |.++.+++++|.++...|++++|+.+|++++.++|++...
T Consensus 92 ~---------~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 92 A---------SQHMTAQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp T---------TTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred c---------CCcchHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 7 898 99999999999955 9999999999999999999999999999999999998654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=109.85 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
.+..+..+|..++..|++++|+.+|+++++++|++ .++.++|.++..+| ++++|+..++++++++|+++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--------SFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCCCcHHH
Confidence 34555666666666666666666666666666655 55555555555554 2555555555555555555555
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
|+.+|.++... |++++|+..|+++++
T Consensus 75 ~~~lg~~~~~~---------~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 75 YIRKATAQIAV---------KEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------hCHHHHHHHHHHHHH
Confidence 55555555555 555555555555555
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=143.87 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=159.2
Q ss_pred chhhHHHHHhhhhhhcccc----------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--ChhHHHHHHHHHHhc
Q 020060 61 TQRATYEYLKGKILDVVPE----------YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG--DLPAAKNCFNLALSK 128 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~ 128 (331)
+....+|+.++.++...|+ + ++++.++.+++..+|++..+|+.++.++...+ ++++++.++.++++.
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~-~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALV-KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 4567889999999999888 8 99999999999999999999999999999999 679999999999999
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc-----CCCChhhHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT-----GSWDHSKLLQS 202 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~A 202 (331)
+|.+ .+|...+.++..+|. .++++++++.++++.+|.+..+|++++.++..+.-.. +....+.++++
T Consensus 139 d~~N~~aW~~R~~~l~~l~~-------~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ee 211 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAV-------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCC-------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHH
Confidence 9999 999999999998872 4899999999999999999999999999988741110 01133789999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH------------HHHHHHHHHhcCCCC
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER------------ALSGFEASALKDPSL 252 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~~~~ 252 (331)
++++.+++... |++..+|++++.++...+++++ |+.+|.+++.++|..
T Consensus 212 l~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 212 LELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 99999999955 9999999999999999988766 566688888777763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=126.18 Aligned_cols=205 Identities=12% Similarity=-0.005 Sum_probs=163.2
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC----
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP---- 130 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 130 (331)
.....++..+|.++...|++ ++|+..+++++.+.|.. ..++..+|.++...|++++|+.++++++++.+
T Consensus 50 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 128 (373)
T 1hz4_A 50 YSRIVATSVLGEVLHCKGEL-TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL 128 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34566788999999999998 99999999999876543 34578899999999999999999999998752
Q ss_pred ----Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 131 ----NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD-----GNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 131 ----~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
.. ..+..+|.++...| ++++|..++++++...+.. ..++..+|.++... |+++
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~ 191 (373)
T 1hz4_A 129 EQLPMHEFLVRIRAQLLWAWA--------RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR---------GDLD 191 (373)
T ss_dssp TTSTHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH---------TCHH
T ss_pred ccCcHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc---------CCHH
Confidence 22 56777999999887 4999999999999887653 34678899999988 9999
Q ss_pred HHHHHHHHHHhchhcCCChhHHh-----hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH----H-HHHHHHHHHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYF-----NCATVNKYLENYERALSGFEASALKDPSLNA----T-EEVQMMVNLLDKIEN 270 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~-~~l~~~~~~l~~~~~ 270 (331)
+|...+++++.....+..+..+. .++.++...|++++|..++++++...|.... . ..++.++...|++++
T Consensus 192 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 271 (373)
T 1hz4_A 192 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271 (373)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 99999999987532233322222 3445688999999999999999987765321 2 677888888899999
Q ss_pred HHHhhhhhhhHHH
Q 020060 271 LLKGHAKTKRVAS 283 (331)
Q Consensus 271 a~~~~~~a~~l~~ 283 (331)
|...+.++..+.+
T Consensus 272 A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 272 AEIVLEELNENAR 284 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888776644
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-15 Score=117.70 Aligned_cols=175 Identities=14% Similarity=0.113 Sum_probs=136.8
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC------Ch-HHHhhHHHHHHHhcc
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP------NK-KILCQLSMLERSMAQ 147 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~-~~~~~l~~~~~~~g~ 147 (331)
+..|+| ++|...++......+..+.++..+|.++...|++++|+.++++++.+.. .. .++..+|.++...|
T Consensus 3 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g- 80 (203)
T 3gw4_A 3 FEAHDY-ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG- 80 (203)
T ss_dssp ----CH-HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred cccccH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-
Confidence 457887 9999966555554446789999999999999999999999999998532 22 67888999999887
Q ss_pred CchhHHHHHHHHHHHHHHHhcC---CC----CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh-
Q 020060 148 GSENQAEIVEESIQHAKEAITL---DV----KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP- 219 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~- 219 (331)
++++|+.++++++.+ .+ ....++.++|.++... |++++|+.++++++.......++
T Consensus 81 -------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 81 -------NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF---------GDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp -------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -------CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhccchH
Confidence 499999999999987 33 2345788999999999 99999999999999743223333
Q ss_pred ---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 020060 220 ---DLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDK 267 (331)
Q Consensus 220 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~ 267 (331)
.++.++|.++...|++++|..++++++.+..........+.++..++.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 195 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNG 195 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccc
Confidence 337899999999999999999999999987666555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=110.45 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=95.4
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--------
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------- 132 (331)
++.+..+..+|..++..|+| ++|+.+|+++++++|+++.+|.++|.+|...|++++|+..|+++++++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~-~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDF-EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 46677889999999999998 999999999999999999999999999999999999999999999998765
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
.++.++|.++..+| ++++|+.+|++++...|+ +....
T Consensus 84 ~~~~~lg~~~~~~~--------~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 84 KAMSRAGNAFQKQN--------DLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCcC-HHHHH
Confidence 36677888888776 599999999999998774 44433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-16 Score=141.23 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=105.2
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..++| ++|+..|..++...|..+.++..+|.+++..|+|++|+.+|++++++.|.+..+. ..
T Consensus 246 ~l~~~-~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------------~~ 307 (457)
T 1kt0_A 246 TLKSF-EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-----------------EK 307 (457)
T ss_dssp EEEEE-ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-----------------HH
T ss_pred hhhhc-ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-----------------hH
Confidence 56677 8899999999999999999999999999999999999999999999998861100 00
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
... +..+....+|+++|.+|..+ |++++|+.+|++++... |.++.+++++|.+|..+|++
T Consensus 308 ~~~---------~~~~~~~~~~~nla~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~ 367 (457)
T 1kt0_A 308 ESK---------ASESFLLAAFLNLAMCYLKL---------REYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEF 367 (457)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCH
Confidence 000 01112234556666666666 66666666666666633 66666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 236 ERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
++|+.+|+++++++|++... ..++.++..++++.++.
T Consensus 368 ~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 368 ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555 66666666666655554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=122.19 Aligned_cols=167 Identities=13% Similarity=0.034 Sum_probs=119.1
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccC
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~ 148 (331)
..+......|+| ++|.+.+.......+..+..+..+|.+++..|++++|+.+|.+++.+.|.+..+... . .
T Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~----~--- 79 (198)
T 2fbn_A 9 HHSSGRENLYFQ-GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-I----L--- 79 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-H----H---
T ss_pred chhhhhhhhhhc-cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-h----H---
Confidence 344455556666 666666665555555667777778888888888888888888888777665211110 0 0
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 149 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
......+ ...++.++|.++... |++++|+.++++++... |.++.+++++|.+
T Consensus 80 -----~~~~~~~------------~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 131 (198)
T 2fbn_A 80 -----LDKKKNI------------EISCNLNLATCYNKN---------KDYPKAIDHASKVLKID--KNNVKALYKLGVA 131 (198)
T ss_dssp -----HHHHHHH------------HHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred -----HHHHHHH------------HHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 0011111 146889999999999 99999999999999955 9999999999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
+..+|++++|+.+|++++.++|++... ..++.++..+++..++.
T Consensus 132 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 132 NMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888 89999999988887776
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=113.86 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=58.4
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..++.+|.++...| ++++|+.+|+++++++|+++.+|+++|.+|... |++++|+..|++++..
T Consensus 12 ~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 12 DKLKSEGNAAMARK--------EYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS---------GQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHh
Confidence 34445555555444 255555555555555555555555555555555 5566666666666553
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
. |.++.+|+++|.++..+|++++|+.+|++++.++|++..
T Consensus 75 ~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 D--PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 3 555555666666666666666666666666666665554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=127.10 Aligned_cols=213 Identities=10% Similarity=-0.037 Sum_probs=164.3
Q ss_pred chhhHHHHHhhhhhhccc-ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-C-ChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 61 TQRATYEYLKGKILDVVP-EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-G-DLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
+....+|+.++.++...+ .+ ++++.++.+++..+|++..+|..++.++... + ++++++.++.++++.+|.+ .+|.
T Consensus 85 P~~ytaWn~R~~iL~~l~~~l-~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 85 PAHYTVWQYRFSLLTSLNKSL-EDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred chhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 456788999999999999 57 9999999999999999999999999999998 8 9999999999999999999 9999
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
..+.++..+|.........+.++++++.++++.+|.+..+|++.+.++....... .....++++++++.+++... |
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~--~~~~~~~eELe~~~~aI~~~--P 239 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE--TSSRSLQDELIYILKSIHLI--P 239 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC--CCHHHHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHHhC--C
Confidence 9999999876311101112349999999999999999999999999998771000 01123799999999999955 9
Q ss_pred CChhHHhhHHHHHHHhhcH--------------------HHHHHHHHHHHhcC------CCCcHH-HHHHHHHHHHHHHH
Q 020060 217 SNPDLYFNCATVNKYLENY--------------------ERALSGFEASALKD------PSLNAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------~~~~~~-~~l~~~~~~l~~~~ 269 (331)
.|..+|+++..++...|+. ..-........... +....+ ..++.++...++..
T Consensus 240 ~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 319 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD 319 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH
Confidence 9999999999998887764 12222222222211 244455 88888888888777
Q ss_pred HHHHhhhhh
Q 020060 270 NLLKGHAKT 278 (331)
Q Consensus 270 ~a~~~~~~a 278 (331)
+|++.+...
T Consensus 320 ~a~~~~~~l 328 (349)
T 3q7a_A 320 DAAKVFEKL 328 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-16 Score=122.95 Aligned_cols=150 Identities=14% Similarity=-0.002 Sum_probs=117.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSM 140 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 140 (331)
...+..+..+|..++..|+| ++|+.+|.+++.+.|.++..... ........+ ...++.++|.
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~----~~~~~~~la~ 96 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWDDQ-------------ILLDKKKNI----EISCNLNLAT 96 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCCCH-------------HHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcccccchh-------------hHHHHHHHH----HHHHHHHHHH
Confidence 34677899999999999998 99999999999998876532111 000011111 0267888999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++..+| ++++|+.+++++++.+|.++.+++.+|.++... |++++|+..|++++... |.++.
T Consensus 97 ~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~ 157 (198)
T 2fbn_A 97 CYNKNK--------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYF---------GFLEEAKENLYKAASLN--PNNLD 157 (198)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHHhc--------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHC--CCcHH
Confidence 999887 499999999999999999999999999999999 99999999999999955 99999
Q ss_pred HHhhHHHHHHHhhcHHHHH-HHHHHHHh
Q 020060 221 LYFNCATVNKYLENYERAL-SGFEASAL 247 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~-~~~~~al~ 247 (331)
++..++.++..+++..++. ..|.+.+.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887 44554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-15 Score=108.11 Aligned_cols=120 Identities=17% Similarity=0.105 Sum_probs=113.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+.....++.+|.++...|++ ++|+.+|++++..+|.+..++..+|.++...|++++|+.+++++++..|.+ .++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDY-PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCS-HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 4567788999999999999998 999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+|.++..+| ++++|+.+++++++.+|.+..++..++.++...
T Consensus 90 la~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 90 KAAALEAMK--------DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999887 499999999999999999999999999998865
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=121.60 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=132.9
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|..+.++..+|..+...|++++|+.+|+++++.+|++ .++.++|.++..+| ++++|+..++++++++|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTSCTTCH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCCCCH
Confidence 5678899999999999999999999999999999988 89999999999887 49999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+++.+|.++... |++++|+..|+++++.. |+++..+........ ...++..+........|.+..
T Consensus 73 ~~~~~lg~~~~~~---------g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 138 (281)
T 2c2l_A 73 KAHFFLGQCQLEM---------ESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESE 138 (281)
T ss_dssp HHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCH
T ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999 99999999999999965 777655443333333 233334444445556777776
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
. ..++.++ .|++++|++.+.++.++
T Consensus 139 i~~~l~~l~--~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 139 LHSYLTRLI--AAERERELEECQRNHEG 164 (281)
T ss_dssp HHHHHHHHH--HHHHHHHHTTTSGGGTT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 6 6666654 78999999888777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.8e-15 Score=108.28 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.|..+.+++.+|.++...|++++|+.+|+++++..|.+ .++..+|.++...| ++++|+.+++++++.+|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--------EFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT--------CHHHHHHHHHHHHHHCTTC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCCc
Confidence 45667888888888888888888888888888888877 78888888888776 4888888888888888888
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.++..+|.++... |++++|+.+|++++... |.+..++..++.++..+|+
T Consensus 84 ~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAM---------KDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhcC
Confidence 88888888888888 88888888888888844 8888888888888877664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=106.89 Aligned_cols=120 Identities=22% Similarity=0.171 Sum_probs=113.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..++.+|..+...|++ ++|+.+|++++...|.++.++..+|.++...|++++|+.++.+++...|++ .++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 4456788899999999999998 999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+|.++...| ++++|+.+++++++.+|+++.++..+|.++...
T Consensus 86 ~~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 86 MGLALSSLN--------KHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 999999887 499999999999999999999999999999877
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=128.69 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=129.9
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC----
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---- 173 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---- 173 (331)
.|.+|...|++++|+.+|.+++++.+.. .++.++|.++..+| ++++|+.+|++++++.+..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ--------RMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHHHHHcCCHH
Confidence 4788999999999999999999886532 57788999999887 4999999999999875432
Q ss_pred --chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 174 --GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 174 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
..++.++|.+|. . |++++|+.+|++++.......+ ..++.++|.++..+|++++|+.+|++++.
T Consensus 114 ~~a~~~~~lg~~~~---------~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 114 TAAMALDRAGKLME---------P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHT---------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357788888884 3 8999999999999985422222 46689999999999999999999999999
Q ss_pred cCCCCcH------H-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 248 KDPSLNA------T-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 248 ~~~~~~~------~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.|.+.. . ..++.++..+|++.+|+..+.++. +.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 8765431 3 667777777899999999998887 544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=106.65 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=91.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
....++.+|..+...|++ ++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++++|++ .++..+|.+
T Consensus 16 ~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp GCSCHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344578899999999998 999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
+...| ++++|+..++++++.+|++..
T Consensus 95 ~~~~g--------~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 95 HTNEH--------NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHH--------HHHHHHHHHHHHHC-------
T ss_pred HHHcC--------CHHHHHHHHHHHHHhCcCCCC
Confidence 99775 699999999999999997653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=112.53 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=102.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC-------cHH-----HHHHHHHHHHHhCChhHHHHHHHHHHhc-
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS-------LAD-----AWLCLGSCIWKKGDLPAAKNCFNLALSK- 128 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~- 128 (331)
..+..+..+|..++..|+| ++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~-eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEY-DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3466788999999999998 9999999999999999 444 9999999999999999999999999999
Q ss_pred ------CCCh-HHH----hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 129 ------GPNK-KIL----CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 129 ------~~~~-~~~----~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
+|++ .+| +++|.++..+| ++++|+.+|+++++++|++..+...+..+-
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lg--------r~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLG--------RGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCC--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999 889 99999999997 499999999999999999887766555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=107.57 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
+|..+.++..+|.++...|++++|+.+|++++...|++ .++..+|.++...| ++++|+.++.+++..+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG--------NYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTC
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--------chHHHHHHHHHHHhcCccC
Confidence 45567788889999999999999999999999888877 78888888888776 4889999999998888888
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
+.++..+|.++... |++++|+.+|++++... |.++.++..+|.++..+|++
T Consensus 80 ~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSL---------NKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 88888999888888 88999999999988854 88888888888888888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=120.31 Aligned_cols=205 Identities=13% Similarity=0.010 Sum_probs=163.8
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN--------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.....++..+|.++...|++ ++|+.++++++.+. |....++..+|.++...|++++|..++++++...+..
T Consensus 90 ~~~~~~~~~la~~~~~~G~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFL-QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 34566688899999999998 99999999999874 3456778899999999999999999999999988753
Q ss_pred ------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHH-----HHHHHHHhhhhhcCCCChhhH
Q 020060 133 ------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWY-----NLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 ------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++..+|.++...| ++++|..++++++.+.+. .+..+. .++.++... |++
T Consensus 169 ~~~~~~~~~~~la~~~~~~g--------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~ 231 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARG--------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT---------GDK 231 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---------TCH
T ss_pred CcHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC---------CCH
Confidence 45777899998776 599999999999876332 222222 233446666 999
Q ss_pred HHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc------HH-HHHHHHHHHHHHH
Q 020060 200 LQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALKDPSLN------AT-EEVQMMVNLLDKI 268 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~-~~l~~~~~~l~~~ 268 (331)
++|...+++++... +.+ ...+..+|.++...|++++|...+++++...+... .. ..++.++...|+.
T Consensus 232 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 232 AAAANWLRHTAKPE--FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp HHHHHHHHHSCCCC--CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCCCC--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 99999999998743 432 22468899999999999999999999988755422 23 6778899999999
Q ss_pred HHHHHhhhhhhhHHHHH
Q 020060 269 ENLLKGHAKTKRVASLA 285 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~ 285 (331)
++|...+.++..+.+..
T Consensus 310 ~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 310 SDAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998876643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=121.34 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=141.7
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
+|.....+...+..+...|++++|+..+.++++..+.. ..++.+|.++...| ++++|+.++++++
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al 142 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--------CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHH
Confidence 34556677888999999999999999999999987754 23455777777665 4999999999999
Q ss_pred cCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc-hhcCCCh----hHHhhHHHHHHHhhcHH
Q 020060 168 TLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-ERMKSNP----DLYFNCATVNKYLENYE 236 (331)
Q Consensus 168 ~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~----~~~~~la~~~~~~g~~~ 236 (331)
...+.. ..+++++|.+|... |++++|+.+|++++.. ...+.+. .+++++|.+|..+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~---------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 876543 45889999999999 9999999999999953 1234433 57999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------cHH-HHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHh
Q 020060 237 RALSGFEASALKDPSL------NAT-EEVQMMVNLLDKIENL-LKGHAKTKRVASLAS 286 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~------~~~-~~l~~~~~~l~~~~~a-~~~~~~a~~l~~~~~ 286 (331)
+|+.+|++++.+.++. ... ..+|.++..+|++++| ...+.+|..+.....
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999875431 234 8899999999999999 677899887765543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-14 Score=127.55 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=145.4
Q ss_pred HHHHhhhhhhccc---ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----CChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 66 YEYLKGKILDVVP---EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----GDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 66 ~~~~~g~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+++.+|.+|...| ++ ++|+.+|+++....|..+..++.+|.+|... +++++|+.+|+++. |.+ .++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~-~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQ-AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHcCCcccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 7888999999888 86 8999999999999999888889999998766 78999999999987 666 88889
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++.... ..+++++|+.+|+++.+. .++.++++||.+|. . |.....++++|+.+|+++. ++
T Consensus 254 Lg~~~~~~~-----~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~----G~g~~~d~~~A~~~~~~Aa-----~g 316 (452)
T 3e4b_A 254 LAQLLYDFP-----ELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E----GKWVPADAKAAEAHFEKAV-----GR 316 (452)
T ss_dssp HHHHHHHSG-----GGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H----CSSSCCCHHHHHHHHHTTT-----TT
T ss_pred HHHHHHhCC-----CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c----CCCCCCCHHHHHHHHHHHh-----CC
Confidence 998844111 124689999999998864 47888999998887 3 0011138899999999886 77
Q ss_pred ChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhh
Q 020060 218 NPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTK 279 (331)
Q Consensus 218 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~ 279 (331)
++.+++++|.+|.. ..++++|+.+|+++.+. .++.+ ..++.++.. ..+..+|...|.+|.
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 88889999988876 34899999999998764 34555 777776642 234555665555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-14 Score=127.30 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=153.0
Q ss_pred hHHHHHhhhhhhccccc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC---ChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 64 ATYEYLKGKILDVVPEY---RKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG---DLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
+..++.+|.+|...+.+ .+.+..+++.+...+|. +++.+|.+|...| ++++|+.+|+++.+..|.. ..++
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~ 217 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVD 217 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44566667777666633 14455556555555554 9999999999999 9999999999999999887 6678
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
++|.++..... ..+++++|+.+|+++. |.++.+++++|.+|.... ..+++++|+.+|+++.. .
T Consensus 218 ~Lg~~y~~g~~----~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~------~~~d~~~A~~~~~~Aa~----~ 280 (452)
T 3e4b_A 218 SVARVLGDATL----GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFP------ELGDVEQMMKYLDNGRA----A 280 (452)
T ss_dssp HHHHHHTCGGG----SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSG------GGCCHHHHHHHHHHHHH----T
T ss_pred HHHHHHhCCCC----CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHH----C
Confidence 99999864310 1135899999999998 999999999999944110 12899999999999986 7
Q ss_pred CChhHHhhHHHHHHHhh-----cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhh
Q 020060 217 SNPDLYFNCATVNKYLE-----NYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKR 280 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~ 280 (331)
+++.+++++|.+|. .| ++++|+.+|+++. +.++.+ ..+|.++.. ..++.+|+..|.+|.+
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 79999999999998 66 9999999999999 888888 999988765 2378888888887765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-14 Score=105.25 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|..+..+..+|.++...|++++|+.+|++++..+|++ .++..+|.++..+| ++++|+..++++++++|+++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCchhH
Confidence 3444444444444444444444444444444444444 44444444444443 24444444444444444444
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.+|+.+|.++... |++++|+..|++++.
T Consensus 78 ~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 78 KAHFFLGQCQLEM---------ESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------hhHHHHHHHHHHHHH
Confidence 4444444444444 444444444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=106.34 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=91.9
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.++.++|.+++..| ++++|+.+|+++++++|+++.+|.++|.+|..+ |++++|+..|+++++.
T Consensus 9 ~a~~~lG~~~~~~~--------~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~---------~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 9 IAEKDLGNAAYKQK--------DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE---------KKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---------hhHHHHHHHHHHHHHh
Confidence 46778999999887 499999999999999999999999999999999 9999999999999985
Q ss_pred hhcCCCh-------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 213 ERMKSNP-------DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 213 ~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
. |.++ .++.++|.++..+|++++|+.+|++++...|+.
T Consensus 72 ~--~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 72 G--RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp H--HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred C--cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5 6553 468999999999999999999999999998874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=111.20 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=107.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------------------CCCcHHHHHHHHHHHHHhCChhHHHHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------------------NPSLADAWLCLGSCIWKKGDLPAAKNCF 122 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (331)
...+..+..+|..++..|+| ++|+.+|.+++.+ +|..+.++.++|.+|...|++++|+.++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35677899999999999998 9999999999999 7777899999999999999999999999
Q ss_pred HHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHhh
Q 020060 123 NLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG-NSWYNLGNACLTS 187 (331)
Q Consensus 123 ~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~ 187 (331)
.++++++|++ .+++.+|.++..+| ++++|+..|++++.++|+++ .+...++.+....
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g--------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAW--------KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHh--------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999997 49999999999999999998 6677777766554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=136.77 Aligned_cols=128 Identities=12% Similarity=0.070 Sum_probs=116.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..++.+|..+...|+| ++|+.+|+++++++|+++.++.++|.+|...|++++|+.+|+++++++|++ .+++++|.
T Consensus 4 ~~a~~~~~lg~~~~~~g~~-~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566678899999999998 999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH--HHhhhhhcCCCChhhHHHHHHHHH
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA--CLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
++..+| ++++|+..++++++++|+++.++..++.+ +... |++++|+..++
T Consensus 83 ~~~~~g--------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---------g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALG--------KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ---------KAFERAIAGDE 134 (477)
T ss_dssp HHHHHT--------CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH---------HHHCCC-----
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---------HHHHHHhcccc
Confidence 999887 49999999999999999999999999998 7777 99999999999
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-14 Score=100.34 Aligned_cols=113 Identities=19% Similarity=0.090 Sum_probs=106.4
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+..++.+|..+...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+++++++..|++ .++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 456788999999999998 999999999999999999999999999999999999999999999999998 889999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
+..+| ++++|...++++++.+|+++.++..++.+.
T Consensus 82 ~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLN--------RFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTT--------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHh--------hHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99887 499999999999999999999998888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-15 Score=124.84 Aligned_cols=189 Identities=13% Similarity=0.066 Sum_probs=155.9
Q ss_pred HHHHHHhcCCCCCCCCCcchhhHHHHHh-------hhhhhcccccHHHHHHHHHHHHhcCCCcHH---------------
Q 020060 43 DLALRLLGSVPPEQRKSPTQRATYEYLK-------GKILDVVPEYRKDAEDHLSKAVKLNPSLAD--------------- 100 (331)
Q Consensus 43 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------- 100 (331)
..|.+.|..... ..+..+..|..+ +.++...+++ .+++..+++.+.+.|....
T Consensus 23 ~~A~~~F~~a~~----~dP~~~Daw~g~~a~g~~~~~~L~~~~r~-~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 23 ARSLDLFTEITN----YDESACDAWIGRIRCGDTDRVTLFRAWYS-RRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHTTCCCHHHHHHHHHT-GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred HHHHHHHHHHHH----hChhhhHHHHhHHHccCCcHHHHHHHHHH-HHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 445555555443 345778899998 8899999996 8999999999998876543
Q ss_pred ------HHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-C
Q 020060 101 ------AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-D 173 (331)
Q Consensus 101 ------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~ 173 (331)
++..++.++...|+|++|...|..++...|.+...+.+|.++...+ ++++|+..|+.+....+. .
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~--------r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAE--------RWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTT--------CHHHHHHHHTTGGGCSCHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcC--------CHHHHHHHHHHhhccCCccc
Confidence 4445889999999999999999999998887778888999999776 599999999988775322 1
Q ss_pred -chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 174 -GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 174 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..+++.+|.++..+ |++++|+.+|++++.....|. .+++++++|.++..+|+.++|...|++++..+|+
T Consensus 170 ~~~a~~~LG~al~~L---------G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 170 AGAAGVAHGVAAANL---------ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 35899999999999 999999999999985321144 5678999999999999999999999999999998
Q ss_pred CcH
Q 020060 252 LNA 254 (331)
Q Consensus 252 ~~~ 254 (331)
..
T Consensus 241 -~~ 242 (282)
T 4f3v_A 241 -PK 242 (282)
T ss_dssp -HH
T ss_pred -HH
Confidence 54
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=104.35 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=88.3
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..++.+|.++...| ++++|+..++++++.+|+++.+|+.+|.++... |++++|+..|+++++.
T Consensus 18 ~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 18 ENPMEEGLSMLKLA--------NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN---------EKDGLAIIALNHARML 80 (121)
T ss_dssp SCHHHHHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHh
Confidence 45677888888776 499999999999999999999999999999998 9999999999999995
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+ |+++.+++++|.++...|++++|+.+|+++++++|++.
T Consensus 81 ~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 81 D--PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp C--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 5 99999999999999999999999999999999999864
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=108.12 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC-------h-H-----HHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-------K-K-----ILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------~-~-----~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
.+..+..+|..++..|+|++|+.+|+++++++|+ + . +|.++|.++..+| ++++|+.++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--------r~~eAl~~~~ 81 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--------SFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--------CHHHHHHHHH
Confidence 3567899999999999999999999999999998 4 2 8999999999997 4999999999
Q ss_pred HHhcC-------CCCCchhH----HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 165 EAITL-------DVKDGNSW----YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 165 ~al~~-------~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
+++++ +|+++.+| +++|.++..+ |++++|+.+|++++++. |++......+..+-.
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l---------gr~eEAl~~y~kAlel~--p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGL---------GRGAEAMPEFKKVVEMI--EERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HHCCSCCTTHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC---------CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence 99988 88888888 8888888888 88888888888888855 777766655554433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-14 Score=105.26 Aligned_cols=117 Identities=21% Similarity=0.116 Sum_probs=106.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+..+..++.+|.++...|+| ++|+.+|.+++..+|+++.++..+|.++...|++++|+.+|+++++++|++ .+++.+|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcH-HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678899999999999998 999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVK-----DGNSWYNLGNACLT 186 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 186 (331)
.++..+| ++++|+..++++++++|+ +..++..+..+...
T Consensus 85 ~~~~~~~--------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 85 QCQLEME--------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHTT--------CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHh--------hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 9999887 499999999999999988 56666666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=126.67 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=115.0
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---------------ADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
+..+..+..+|..++..|+| ++|+.+|++++.++|.+ ..+|.++|.||...|++++|+.+|+++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKY-MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35577899999999999998 99999999999999998 689999999999999999999999999
Q ss_pred HhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 126 LSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 126 l~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
++++|++ .+++++|.++..+| ++++|+..|+++++++|++..++..++.++... +++++|..
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g--------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~---------~~~~~a~~ 406 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMN--------EFESAKGDFEKVLEVNPQNKAARLQISMCQKKA---------KEHNERDR 406 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTC----CHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 9999999 99999999999987 499999999999999999999999999999998 88887765
Q ss_pred H
Q 020060 205 A 205 (331)
Q Consensus 205 ~ 205 (331)
.
T Consensus 407 ~ 407 (457)
T 1kt0_A 407 R 407 (457)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=100.42 Aligned_cols=113 Identities=29% Similarity=0.399 Sum_probs=58.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...++.+|.++...|++ ++|+.+|.+++...|.+..++..+|.++...|++++|+.+|++++...|.+ ..+..+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44455555555555554 555555555555555555555555555555555555555555555555544 4444455555
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
...| ++++|+..++++++.+|.++.++..++.++.
T Consensus 88 ~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQG--------DYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhc--------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5443 2555555555555555555555555544443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=100.54 Aligned_cols=101 Identities=25% Similarity=0.353 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+....+++.+|.++...|++ ++|+.++++++...|.++.++..+|.++...|++++|+
T Consensus 23 ~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (125)
T 1na0_A 23 GDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 97 (125)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH
Confidence 556677777777654 2334566788888888888887 88888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
.+|+++++.+|++ .++..++.++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 98 EYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888877 7777777776644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=117.67 Aligned_cols=170 Identities=10% Similarity=-0.005 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H------HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K------ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~------~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+...+..+...|++++|...+++++...+.. . .+..+|.++...| ++++|+.++++++...+..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--------CHHHHHHHHHHHHHHhccc
Confidence 34456788899999999999999999977655 1 2224677776554 4999999999999975544
Q ss_pred ch------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-----hcCCChhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 174 GN------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-----RMKSNPDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 174 ~~------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
.. ++.++|.+|... |++++|+.+|+++++.. ..+....+++++|.+|..+|++++|+.++
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33 689999999999 99999999999999521 11223456999999999999999999999
Q ss_pred HHHHhcCCCC------cHH-HHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHhh
Q 020060 243 EASALKDPSL------NAT-EEVQMMVNLLDK-IENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 243 ~~al~~~~~~------~~~-~~l~~~~~~l~~-~~~a~~~~~~a~~l~~~~~~ 287 (331)
++++.+.+.. ... ..+|.++..+|+ +++|++.+.+|..+......
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999876543 334 889999999994 69999999999988776544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=108.55 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
.+..+..+|..++..|+|++|+.+|.+++.+.+..... .... +.+ ....+|.+..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~----------~~~~-----~~~--------~~~~~~~~~~~~ 66 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR----------EKPG-----EPE--------WVELDRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT----------SCTT-----SHH--------HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc----------CCCC-----HHH--------HHHHHHHHHHHH
Confidence 36788999999999999999999999999873221000 0000 000 012346667788
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc-HH-
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN-AT- 255 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~- 255 (331)
.++|.++..+ |++++|+..+++++..+ |.++.+|+.+|.++..+|++++|+.+|++++.++|++. ..
T Consensus 67 ~nla~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 67 ANMSQCYLNI---------GDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp HHHHHHHHHH---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHhc---------CcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888888888 88999999999998855 88888899999999999999999999999999998887 43
Q ss_pred HHHHHHHHHHHHHHHH
Q 020060 256 EEVQMMVNLLDKIENL 271 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a 271 (331)
..++.+...+.+..+.
T Consensus 136 ~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 136 REMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665554433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-13 Score=112.69 Aligned_cols=188 Identities=10% Similarity=0.024 Sum_probs=149.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC-----hHHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP--SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-----KKILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~ 136 (331)
...++.+|.++...|++ ++|+..+.+++..+| +..+++..++.++...|+.+.|.+.+++..+.+|+ +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 100 PYELYLLATAQAILGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 34457899999999997 999999999999997 88999999999999999999999999999999993 56666
Q ss_pred hHHHH--HHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 137 QLSML--ERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 137 ~l~~~--~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.++.. ....|. +++.+|..+|+++.+..|+ .+..+++ ++..+ |++++|...++.+++.
T Consensus 179 ~Laea~v~l~~g~------~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~---------g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 179 NLAESYIKFATNK------ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ---------RNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHTC------STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH---------TCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhCC------ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc---------CCHHHHHHHHHHHHHh
Confidence 66655 443331 2699999999999988886 2333333 78888 9999999999977763
Q ss_pred h--------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 020060 213 E--------RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 213 ~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
. ..|++++++.|+..+...+|+ +|.+++.++.+.+|+++....+. .....++++...|
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~---~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ---EIDAKFDELVRKY 306 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH---HHHHHHHHHHHHh
Confidence 1 038899999999999999998 99999999999999998643222 2334444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-15 Score=136.28 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
.+.++..+|.++...|++++|+.+|+++++++|++ .++.++|.++..+| ++++|+..++++++++|+++.+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCCCCHHH
Confidence 34567778899999999999999999999999998 89999999999887 4999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH--HHHhhcHHHHHHHHH-----------
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV--NKYLENYERALSGFE----------- 243 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~----------- 243 (331)
++++|.+|..+ |++++|+..|+++++.. |+++.++.+++.+ +...|++++|+..++
T Consensus 77 ~~~lg~~~~~~---------g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 145 (477)
T 1wao_1 77 YYRRAASNMAL---------GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 145 (477)
T ss_dssp HHHHHHHHHHH---------TCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence 99999999999 99999999999999955 9999999999999 889999999999999
Q ss_pred HHHhcCCCCcH
Q 020060 244 ASALKDPSLNA 254 (331)
Q Consensus 244 ~al~~~~~~~~ 254 (331)
+++.++|+...
T Consensus 146 ~al~~~~~~~~ 156 (477)
T 1wao_1 146 ESMTIEDEYSG 156 (477)
T ss_dssp SSCCCCTTCCS
T ss_pred hhccccccccc
Confidence 88888876543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=104.34 Aligned_cols=92 Identities=13% Similarity=0.185 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH----------HHHHHHHHHHHhchhcCCChhH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL----------LQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+.+.+++|++.++++++++|+++.+|+++|.++... +++ ++|+..|+++++++ |+++.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l---------~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A 82 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL---------SQFHSISDAKQMIQEAITKFEEALLID--PKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------HHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh---------cccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHH
Confidence 556799999999999999999999999999999988 664 69999999999966 999999
Q ss_pred HhhHHHHHHHhh-----------cHHHHHHHHHHHHhcCCCCcH
Q 020060 222 YFNCATVNKYLE-----------NYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 222 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~ 254 (331)
|+++|.+|..+| ++++|+.+|++|++++|++..
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 999999999885 899999999999999999853
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=123.05 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=92.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHHHHHhCChhHHHHHHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-----------------DAWLCLGSCIWKKGDLPAAKNCFNL 124 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (331)
..+..++.+|..++..|+| ++|+.+|++++.+.|.+. .++.++|.+|...|++++|+.+|++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKL-EEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCC-HHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4577899999999999999 999999999999999876 4899999999999999999999999
Q ss_pred HHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 125 ALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 125 al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
+++++|++ .+++++|.++..+| ++++|+..|+++++++|+++.++..++.+.... .+..+++.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g--------~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~--------~~~~~~a~ 319 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELG--------QMDSARDDFRKAQKYAPDDKAIRRELRALAEQE--------KALYQKQK 319 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTT--------CHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 99999998 99999999999987 499999999999999999999999999885433 16778888
Q ss_pred HHHHHHHhchhcCCCh
Q 020060 204 KAYQNAEKDERMKSNP 219 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~ 219 (331)
..|.+++... |.++
T Consensus 320 ~~~~~~l~~~--p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGK--DEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHhhCCC--CCCC
Confidence 8999888744 6554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=97.07 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
+..++.+|.++...|++++|+.+|++++...|.+ .++..+|.++...| ++++|+..++++++.+|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--------DYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHhCcccHHHH
Confidence 4556666666666666666666666666666655 55666666666554 36666666666666666666666
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
..+|.++... |++++|+..+++++... |.++.++..++.+
T Consensus 76 ~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 115 (118)
T 1elw_A 76 SRKAAALEFL---------NRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHH---------hhHHHHHHHHHHHHHcC--CCCHHHHHHHHHh
Confidence 6666666665 66666666666666533 6666655555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-13 Score=129.02 Aligned_cols=206 Identities=10% Similarity=0.032 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+++|.+..+++. ...+|+.+|.++...|++ ++|+.+|.++ +++..|..+|.++.+.|++++|+
T Consensus 1090 ~nldrAiE~Aervn---------~p~vWsqLAKAql~~G~~-kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred hhHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCH-HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666543 367899999999999998 9999999886 88999999999999999999999
Q ss_pred HHHHHHHhcCCCh----------------------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC
Q 020060 120 NCFNLALSKGPNK----------------------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 120 ~~~~~al~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 171 (331)
++|..+.+..++. ..+..+|..+...| ++++|..+|.++
T Consensus 1155 eyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg--------~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK--------MYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHhh-----
Confidence 9999988766442 12334555555443 588999998875
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-----------------------cCCChhHHhhHHHH
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-----------------------MKSNPDLYFNCATV 228 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~la~~ 228 (331)
..|..++.++..+ |++++|++.++++..... ...+++.+..++..
T Consensus 1222 ---~ny~rLA~tLvkL---------ge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHL---------GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 1289 (1630)
T ss_pred ---hHHHHHHHHHHHh---------CCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence 4788999999998 999999999998864220 01255567788889
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH--HHHHHHHHHHHhhhhhhhHHHHH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNAT-EEVQMMV--NLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~--~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
|...|.|++|+.++++++.++|.+... ..++.++ ...++..+.++.|.....+.+++
T Consensus 1290 Ye~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 999999999999999999999888776 5555444 55677777788888777665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=125.89 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
.+..+..+..+|.+++..|++++|+.+|++++.+.|.+..+... +++.++...+. .
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~---------------~~~~~~~~~l~---------~ 230 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY---------------GKYQDMALAVK---------N 230 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCC---------------HHHHHHHHHHH---------T
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhc---------------ccHHHHHHHHH---------H
Confidence 34457889999999999999999999999999999986421111 11233322221 1
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+|+++|.++..+ |++++|+.+|++++... |.++.+|+++|.++..+|++++|+.+|++++.++|++..
T Consensus 231 ~~~~nla~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 231 PCHLNIAACLIKL---------KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHHHHHHHHTT---------TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 2455555555555 55555555555555533 555555555555555555555555555555555555555
Q ss_pred H-HHHHHHHH-HHHHHHHHHHhhhhhhh
Q 020060 255 T-EEVQMMVN-LLDKIENLLKGHAKTKR 280 (331)
Q Consensus 255 ~-~~l~~~~~-~l~~~~~a~~~~~~a~~ 280 (331)
. ..++.+.. ..+...++.+.|.++..
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4 44444422 22333333344444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-13 Score=101.06 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=108.4
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
.+..+..++.+|..+...|+| ++|+.+|++++..+|++ ..++..+|.++...|++++|+.+++++++..|++ .++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDY-GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCH-HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 346678899999999999998 99999999999999998 8999999999999999999999999999999988 899
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
+.+|.++..+| ++++|+.+++++++.+|++..++..++.+..
T Consensus 103 ~~~a~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLG--------RLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHT--------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999887 4999999999999999999999888877654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=103.69 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh----------hHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDL----------PAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
..+.| ++|+..++++++++|+++++|.++|.++...+++ ++|+..|+++++++|++ .+|+++|.++..
T Consensus 14 r~~~f-eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLF-EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34566 9999999999999999999999999999999876 49999999999999999 999999999998
Q ss_pred hccC---chhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 145 MAQG---SENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 145 ~g~~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
+|.. .....+++++|+.+|++|++++|++...+..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7511 00123579999999999999999986544443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-13 Score=117.78 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=115.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHh----------------cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVK----------------LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
..+..+..+|..+...|+| ++|+.+|+++++ .+|..+.++.++|.+|...|++++|+.+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~-~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNW-EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3456788999999999998 999999999999 77888999999999999999999999999999
Q ss_pred HhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 126 LSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 126 l~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
++++|++ .+++.+|.++..+| ++++|+..|+++++++|++..++..++.++... ++++++..
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g--------~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~---------~~~~~a~k 362 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLK--------EYDQALADLKKAQEIAPEDKAIQAELLKVKQKI---------KAQKDKEK 362 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 9999998 99999999999887 499999999999999999999999999999988 88877654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-13 Score=99.35 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=88.7
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
..|..+..++.+|.++...|++++|+.+|+++++..|++ .++..+|.++...| ++++|+..++++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE--------DYDKAETEASKAIEK 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHhh
Confidence 456778888888998888899999999998888888874 56667777777665 377777777777777
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHH
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN 229 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 229 (331)
+|+++.+++.+|.++... |++++|+.+|++++... |.++.++..++.+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKL---------GRLDQAVLDLQRCVSLE--PKNKVFQEALRNIS 143 (148)
T ss_dssp TSCCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Confidence 777777777777777777 77777777777777744 77777666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-13 Score=115.70 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+..+..+|..+...|++++|+.+|++++++.+... +.....+....+|.+..+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~ 277 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------------AAAEDADGAKLQPVALSCVL 277 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------------HHSCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-------------------------cccChHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998644321 01113334455666777888
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
++|.++..+ |++++|+.+++++++.. |.++.+++++|.++..+|++++|+.+|+++++++|++... ..
T Consensus 278 nla~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 278 NIGACKLKM---------SDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHT---------TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhc---------cCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888888877 88888888888888754 8888888888888888888888888888888888887776 77
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020060 258 VQMMVNLLDKIENLLKG 274 (331)
Q Consensus 258 l~~~~~~l~~~~~a~~~ 274 (331)
++.++..+++..++.+.
T Consensus 347 l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888777777777643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=97.81 Aligned_cols=117 Identities=17% Similarity=0.280 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--- 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--- 173 (331)
.+.+++.+|.++...|++++|+.+|.+++...|.+ .++..+|.++...| ++++|+.++++++...|.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHhhccccchh
Confidence 34556666666666666666666666666666665 56666666666554 3666666666666665554
Q ss_pred ----chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 174 ----GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 174 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.++..+|.++... |++++|+.+|++++... | ++..+..++.+....++
T Consensus 75 ~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKE---------EKYKDAIHFYNKSLAEH--R-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhC--C-CHHHHHHHHHHHHHHHH
Confidence 66778888888888 88888888888888743 6 67777777777665543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=95.62 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=98.2
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
+|++ ..+..+|.++...| ++++|+.+++++++.+|.++.++..+|.++... |++++|+..|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~ 64 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAG--------NYTESIDLFEKAIQLDPEESKYWLMKGKALYNL---------ERYEEAVDCYN 64 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSC--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---------TCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc---------cCHHHHHHHHH
Confidence 5666 78899999999887 499999999999999999999999999999999 99999999999
Q ss_pred HHHhchhcCC--ChhHHhhHHHHHHHh-hcHHHHHHHHHHHHhcCCCCc
Q 020060 208 NAEKDERMKS--NPDLYFNCATVNKYL-ENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 208 ~al~~~~~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 253 (331)
++++.. |. ++.++.++|.++... |++++|+.++++++...|.+.
T Consensus 65 ~a~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 65 YVINVI--EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTS--CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhC--cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999955 88 999999999999999 999999999999999999764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=100.43 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK- 172 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~- 172 (331)
++..+|.++...|++++|+.++++++++.+.. .++..+|.++...| ++++|+.++++++...+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--------EFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444433221 23444444444443 245555555554443322
Q ss_pred -----CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC----ChhHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 173 -----DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS----NPDLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 173 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
...++..+|.++... |++++|+.++++++....... .+.++.++|.++...|++++|..+++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLL---------QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 145778899999988 999999999999997432222 24568999999999999999999999
Q ss_pred HHHhcCCCC
Q 020060 244 ASALKDPSL 252 (331)
Q Consensus 244 ~al~~~~~~ 252 (331)
+++.+....
T Consensus 154 ~a~~~~~~~ 162 (164)
T 3ro3_A 154 KHLEISREV 162 (164)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999876543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=96.62 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA---DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQL 138 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l 138 (331)
.++.+|..+...|+| ++|+..|++++..+|+++ .+++.+|.++...|++++|+.+|++++...|++ .+++.+
T Consensus 4 ~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 467899999999998 999999999999999988 899999999999999999999999999999986 568899
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
|.++..+| ++++|+..+++++...|+++.+...+..+-
T Consensus 83 a~~~~~~g--------~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEG--------KNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcC--------CHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999887 499999999999999999887766555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-13 Score=105.05 Aligned_cols=137 Identities=12% Similarity=0.188 Sum_probs=116.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc---C
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK------LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK---G 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~ 129 (331)
.+...+.++..+|.++...|++ ++|+.++++++. ..|..+.++..+|.++...|++++|+.++++++.+ .
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRF-DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 3346788999999999999998 999999999999 44556789999999999999999999999999988 3
Q ss_pred CC---h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhh
Q 020060 130 PN---K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 130 ~~---~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
++ . .++..+|.++..+| ++++|+.++++++...+.. ..++..+|.++... |+
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~ 162 (203)
T 3gw4_A 100 PEDPLAASANAYEVATVALHFG--------DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE---------KN 162 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TC
T ss_pred CccHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC---------cC
Confidence 32 2 56888999999887 4999999999999764322 23468899999998 99
Q ss_pred HHHHHHHHHHHHhch
Q 020060 199 LLQSLKAYQNAEKDE 213 (331)
Q Consensus 199 ~~~A~~~~~~al~~~ 213 (331)
+++|+.++++++...
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999854
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=95.59 Aligned_cols=104 Identities=18% Similarity=0.282 Sum_probs=97.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC--h-HHHhhH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN--K-KILCQL 138 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~-~~~~~l 138 (331)
..+.+++.+|.++...|++ ++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. + .++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNY-TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3456788999999999998 99999999999999999999999999999999999999999999999999 7 899999
Q ss_pred HHHHHHh-ccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 139 SMLERSM-AQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 139 ~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|.++..+ |+ +++|++++++++...|.++
T Consensus 83 ~~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGK--------EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSC--------SHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCC--------HHHHHHHHHHHhhcccCCC
Confidence 9999988 84 9999999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=95.60 Aligned_cols=103 Identities=10% Similarity=0.050 Sum_probs=95.0
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
.++.+|.++...| ++++|+..++++++.+|+++ .+++.+|.++... |++++|+..|++++
T Consensus 4 ~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 4 TAYNVAFDALKNG--------KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT---------RNFQLAEAQFRDLV 66 (129)
T ss_dssp CHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh---------ccHHHHHHHHHHHH
Confidence 4677888888776 59999999999999999998 7999999999999 99999999999999
Q ss_pred hchhcCCC---hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 211 KDERMKSN---PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 211 ~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
... |++ +.+++.+|.++..+|++++|+.+|++++...|++...
T Consensus 67 ~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 67 SRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 954 888 8889999999999999999999999999999998765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=94.67 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=101.2
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..+..+|.++...| ++++|+.++++++..+|.++.++..+|.++... |++++|+.++++++..
T Consensus 5 ~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 5 LKEKELGNDAYKKK--------DFDTALKHYDKAKELDPTNMTYITNQAAVYFEK---------GDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhh
Confidence 56788999999876 499999999999999999999999999999999 9999999999999985
Q ss_pred hhcCCC-------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 213 ERMKSN-------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 213 ~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
. |.+ +.+++++|.++...|++++|..+|++++...|+ ... ..++.+...+++
T Consensus 68 ~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 68 G--RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE 127 (131)
T ss_dssp H--HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred c--cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 5 665 788999999999999999999999999999995 444 666666655544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=99.23 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 154 EIVEESIQHAKEAITL---DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
|++++|+.+|+++++. +|+++.++..+|.++... |++++|+.+|+++++.. |+++.+++++|.++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL---------GEYRKAEAVLANGVKQF--PNHQALRVFYAMVLY 72 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 5799999999999999 699999999999999999 99999999999999955 999999999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 231 YLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+|++++|+.+|++++...|+++..
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999998753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=99.78 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=82.9
Q ss_pred cccccHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh
Q 020060 76 VVPEYRKDAEDHLSKAVKL---NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN 151 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~ 151 (331)
..|++ ++|+.+|++++++ +|+++.++..+|.+|...|++++|+.+|+++++.+|++ .+++.+|.++..+|
T Consensus 2 ~~g~~-~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----- 75 (117)
T 3k9i_A 2 VLGLE-AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG----- 75 (117)
T ss_dssp ------CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----
T ss_pred CCCcH-HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-----
Confidence 35787 8999999999999 68889999999999999999999999999999999999 89999999999887
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
++++|+..+++++...|+++....
T Consensus 76 ---~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 76 ---RYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp ---CHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCCCcHHHHH
Confidence 499999999999999999876543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=100.18 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=116.5
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++...+.++..+|.++...|++ ++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNF-RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999998 99999999999986543 3588999999999999999999999999875432
Q ss_pred -------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC------CchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 133 -------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK------DGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++..+|.++...| ++++|+.++++++...+. ...++..+|.++... |++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~ 145 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQ--------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL---------GNH 145 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCH
T ss_pred CCcHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc---------cCH
Confidence 56788999999887 499999999999976432 245788999999999 999
Q ss_pred HHHHHHHHHHHhc
Q 020060 200 LQSLKAYQNAEKD 212 (331)
Q Consensus 200 ~~A~~~~~~al~~ 212 (331)
++|+.+++++++.
T Consensus 146 ~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 146 DQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=116.07 Aligned_cols=200 Identities=11% Similarity=0.043 Sum_probs=152.5
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-----------------DAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
.....|..+...|+| ++|++.|.++++..|... .++..+|.+|...|++++|+.++.+++..
T Consensus 6 ~~l~~a~~l~~~~~y-~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQY-NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHHHTCH-HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345677888889998 999999999999887642 46889999999999999999999999887
Q ss_pred CCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC------CCchhHHHHHHHHHhhhhhcCCCC
Q 020060 129 GPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV------KDGNSWYNLGNACLTSFFVTGSWD 195 (331)
Q Consensus 129 ~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~ 195 (331)
.+.. .+...++.++...| ++++|+.++++++...+ ....++..+|.++...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------- 148 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPD--------SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK-------- 148 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCS--------CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH--------
T ss_pred HHHccchHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc--------
Confidence 6543 23344566655555 48899999998887533 2356788999999999
Q ss_pred hhhHHHHHHHHHHHHhchhc----CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH--------HHHHHHHH
Q 020060 196 HSKLLQSLKAYQNAEKDERM----KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT--------EEVQMMVN 263 (331)
Q Consensus 196 ~~~~~~A~~~~~~al~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~l~~~~~ 263 (331)
|++++|+..+++++..... +....++..+|.+|..+|++++|..++++++.+.+..... ...+.++.
T Consensus 149 -g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 149 -KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp -TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred -cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999873211 2234679999999999999999999999999875443221 44455555
Q ss_pred HHHHHHHHHHhhhhhhhHHH
Q 020060 264 LLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 264 ~l~~~~~a~~~~~~a~~l~~ 283 (331)
..+++.+|.+.|.++.+...
T Consensus 228 ~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp SSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhh
Confidence 55667777777766665433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-13 Score=116.79 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
.+|..+|..+...|+|++|..+|.++ ..|..++.++..+|+ +++|++.++++ +++.+|..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~--------yq~AVea~~KA-----~~~~~Wk~ 182 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGE--------YQAAVDGARKA-----NSTRTWKE 182 (449)
T ss_dssp --------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTC--------HHHHHHHHHHH-----TCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhcc--------HHHHHHHHHHc-----CCchhHHH
Confidence 36666666666666666666666655 345666777776653 77777777766 35667777
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHH
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEV 258 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l 258 (331)
.+.++... |+++.|..+.... -.+|+-...+..+|.+.|++++|+.++++++.+++.+... ..+
T Consensus 183 v~~aCv~~---------~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel 247 (449)
T 1b89_A 183 VCFACVDG---------KEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 247 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHc---------CcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 77777766 7777775554432 2344445568889999999999999999999999998887 666
Q ss_pred HHHH--HHHHHHHHHHHhhhhhhhHHHHHhhccc
Q 020060 259 QMMV--NLLDKIENLLKGHAKTKRVASLASSLAV 290 (331)
Q Consensus 259 ~~~~--~~l~~~~~a~~~~~~a~~l~~~~~~~~~ 290 (331)
+.++ ...++..+.++.|.....+.++++.-..
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~ 281 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 281 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6554 5678999999999999998887665443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-13 Score=118.90 Aligned_cols=184 Identities=10% Similarity=-0.004 Sum_probs=52.5
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERS 144 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 144 (331)
.+|..+|.++...|++ ++|++.|.++ .++.++..++.++...|++++|+.+++.+.+..++......++.++.+
T Consensus 33 ~vWs~La~A~l~~g~~-~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 3677777777777776 7777777653 345567777777777777777777777776543332333344444444
Q ss_pred hccCchh--------------------HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 145 MAQGSEN--------------------QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 145 ~g~~~~~--------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
+|..... ..|++++|..+|.++ ..|..+|.++..+ |++++|++
T Consensus 107 lg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~L---------g~yq~AVe 169 (449)
T 1b89_A 107 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL---------GEYQAAVD 169 (449)
T ss_dssp --CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTT---------TCHHHHHH
T ss_pred hCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHh---------ccHHHHHH
Confidence 4320000 112355555555433 2445555555555 55555555
Q ss_pred HHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 205 AYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 205 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.++++ .++..|.....++...|+++.|..+... +..+|++ ...+...+...|+++++++.+.+++.+
T Consensus 170 a~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 170 GARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 55544 2344555555555555555555443332 1122221 134556677777777777777777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=89.16 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER 237 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 237 (331)
+|+..|+++++.+|+++.+|+.+|.++... |++++|+..|++++... |.++.+++++|.++..+|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH---------EQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 578899999999999999999999999999 99999999999999955 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHH---HHHHHHHHHHHH
Q 020060 238 ALSGFEASALKDPSLNAT---EEVQMMVNLLDK 267 (331)
Q Consensus 238 A~~~~~~al~~~~~~~~~---~~l~~~~~~l~~ 267 (331)
|..+|++++.+.|..... ..+...+..+++
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 72 ARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999998865432 444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=102.95 Aligned_cols=164 Identities=10% Similarity=-0.018 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC--Ch-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP--NK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
|+..+++.+...+....++..+|.++...|++++|+.++.+++..+| .+ .++..++.++..+| +.+.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~--------r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN--------NVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT--------CHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC--------CHHHHH
Confidence 56677777766656677788999999999999999999999999987 55 88888999999887 599999
Q ss_pred HHHHHHhcCCCC----CchhHHHHHHH--HHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC--ChhHHhhHHHHHHHh
Q 020060 161 QHAKEAITLDVK----DGNSWYNLGNA--CLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS--NPDLYFNCATVNKYL 232 (331)
Q Consensus 161 ~~~~~al~~~p~----~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~la~~~~~~ 232 (331)
+.+++..+.+|+ +..+...++.. .+.. | .+++.+|...|+++.... |+ .+..+++ ++..+
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~----g---~~~~q~A~~~f~El~~~~--p~~~~~~lLln---~~~~~ 224 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT----N---KETATSNFYYYEELSQTF--PTWKTQLGLLN---LHLQQ 224 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH----T---CSTTTHHHHHHHHHHTTS--CSHHHHHHHHH---HHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHh----C---CccHHHHHHHHHHHHHhC--CCcccHHHHHH---HHHHc
Confidence 999999888883 23344555544 5444 0 038999999999987632 54 2344455 89999
Q ss_pred hcHHHHHHHHHHHHhc----------CCCCcHH-HHHHHHHHHHHH
Q 020060 233 ENYERALSGFEASALK----------DPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 233 g~~~~A~~~~~~al~~----------~~~~~~~-~~l~~~~~~l~~ 267 (331)
|++++|...++..++. +|+++.. .++..+...+|+
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 9999999999988877 4777776 577767777775
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-10 Score=113.00 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=115.6
Q ss_pred CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 97 SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
+.+.+|+.+|.++...|++++|+.+|.++ .+...+..++.++..+| ++++|++++..+.+..++ +.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lG--------kyEEAIeyL~mArk~~~e-~~I 1169 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSG--------NWEELVKYLQMARKKARE-SYV 1169 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhccc-ccc
Confidence 56888999999999999999999999876 22277888899888776 499999999988887743 333
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATE 256 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 256 (331)
...+|.+|..+ +++++ ++.| +. ..+...+..+|..+...|+|++|..+|.++ ....
T Consensus 1170 dt~LafaYAKl---------~rlee-le~f---I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~ 1225 (1630)
T 1xi4_A 1170 ETELIFALAKT---------NRLAE-LEEF---IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFG 1225 (1630)
T ss_pred cHHHHHHHHhh---------cCHHH-HHHH---Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHH
Confidence 44588888877 77763 4444 22 334456778999999999999999999986 1237
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 257 EVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.++.++..+|++++|++.+.+|.....
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~n~~a 1252 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKANSTRT 1252 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCHHH
Confidence 888899999999999998888877655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=82.47 Aligned_cols=87 Identities=28% Similarity=0.427 Sum_probs=79.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+++..+..++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++++|++ .++..
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3456778899999999999998 999999999999999999999999999999999999999999999999998 88888
Q ss_pred HHHHHHHhc
Q 020060 138 LSMLERSMA 146 (331)
Q Consensus 138 l~~~~~~~g 146 (331)
+|.++..+|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 998887543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-10 Score=83.41 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHH
Q 020060 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQ 161 (331)
Q Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~ 161 (331)
.|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++ .+++.+|.++..+| ++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG--------DRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC--------CHHHHHH
Confidence 58899999999999999999999999999999999999999999999998 88999999999887 4999999
Q ss_pred HHHHHhcCCCCCc
Q 020060 162 HAKEAITLDVKDG 174 (331)
Q Consensus 162 ~~~~al~~~p~~~ 174 (331)
.|++++++.|...
T Consensus 75 ~~~~al~~~~~~~ 87 (115)
T 2kat_A 75 AWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHhccccc
Confidence 9999999887543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=102.50 Aligned_cols=200 Identities=9% Similarity=-0.004 Sum_probs=155.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-----------
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAE-DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----------- 129 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 129 (331)
....+|+..+..+...|+. ++|. ..|.+++...|.....|...+......|+++.|...|++++...
T Consensus 341 ~~~~lW~~ya~~~~~~~~~-~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTD-STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3467899999998888986 8897 99999999999999999999999999999999999999999752
Q ss_pred CC-----------h-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 130 PN-----------K-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-DVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 130 ~~-----------~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|. . .+|...+....+.| ..+.|..+|.+|++. .+....+|...+.+-... +
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~--------~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~----~---- 483 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQ--------GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI----S---- 483 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT----T----
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh----C----
Confidence 43 2 45777777766554 489999999999987 444566777666655544 1
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l~~~~~a~ 272 (331)
++++.|...|+++++.. |.++..|...+......|+.+.|...|++++...|+... . ..........|..+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999955 999999999999999999999999999999999885222 2 33334444445444444
Q ss_pred Hhhhhhhh
Q 020060 273 KGHAKTKR 280 (331)
Q Consensus 273 ~~~~~a~~ 280 (331)
+...++.+
T Consensus 562 ~v~~R~~~ 569 (679)
T 4e6h_A 562 TLEKRFFE 569 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=87.99 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=45.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+..++.+|.++...|+| ++|+.+|++++.++|+++.++.++|.++...|++++|+.+|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLY-REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 44566666666666665 666666666666666666666666666666666666666666666666665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=86.45 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
++..|..+|.++... |++++|+..|++++... |.++.+++++|.++..+|++++|+.+|++++.++|++
T Consensus 3 ~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ---------GLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 456889999999988 99999999999999955 9999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 020060 253 NATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 253 ~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
........++..++.....++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhH
Confidence 44333444444555544444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=102.44 Aligned_cols=168 Identities=10% Similarity=0.015 Sum_probs=136.8
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
...++..+|.+|...|++ ++|++++.+++...+... .+...+|.++...|++++|+.++++++...+..
T Consensus 54 ~~~al~~l~~~y~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAK-DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHTCH-HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 345688999999999998 999999999998765532 356678889889999999999999998764322
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
..+..+|.++...| ++.+|..++++++.. .+....++..+|.+|... |++++|.
T Consensus 133 ~~~~~~~~la~~~~~~g--------~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~ 195 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKK--------QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL---------RNLAKSK 195 (434)
T ss_dssp SHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHcc--------ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh---------CcHHHHH
Confidence 57788999999887 499999999998764 233456889999999999 9999999
Q ss_pred HHHHHHHhchh-cCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 204 KAYQNAEKDER-MKSN----PDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 204 ~~~~~al~~~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
..+++++.... .+.. ...+..+|.++...|++.+|..+|.+++..
T Consensus 196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 196 ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999997431 1222 244788899999999999999999999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-11 Score=82.80 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=67.6
Q ss_pred CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 169 LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 169 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.+|+++.+|+.+|.++... |++++|+..|+++++.. |.++.+|+++|.++..+|++++|+..|++++.+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH---------DNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4789999999999999999 99999999999999955 999999999999999999999999999999999
Q ss_pred CCCCcH
Q 020060 249 DPSLNA 254 (331)
Q Consensus 249 ~~~~~~ 254 (331)
.|....
T Consensus 71 ~~~~~~ 76 (100)
T 3ma5_A 71 AREEGT 76 (100)
T ss_dssp HHHHSC
T ss_pred hhcCCc
Confidence 776544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=81.08 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=71.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhh
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQ 137 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 137 (331)
+..+.+++.+|.++...|+| ++|+.+|+++++++|+++.+|+.+|.+|...|++++|+..|++++++.|.. .....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNA-SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 45678899999999999998 999999999999999999999999999999999999999999999987765 33344
Q ss_pred HHHHHHH
Q 020060 138 LSMLERS 144 (331)
Q Consensus 138 l~~~~~~ 144 (331)
+...+..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=77.90 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
.++.+++.+|.++... |++++|+.+|++++... |.++.+++++|.++...|++++|+.+|++++.++|+
T Consensus 7 ~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ---------GDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567899999999998 99999999999999955 999999999999999999999999999999999999
Q ss_pred CcHH-HHHHHHHHHH
Q 020060 252 LNAT-EEVQMMVNLL 265 (331)
Q Consensus 252 ~~~~-~~l~~~~~~l 265 (331)
+... ..++.++..+
T Consensus 76 ~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQ 90 (91)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 9887 8888777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=80.45 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=79.5
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD-AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+.+|..+...|++ ++|+..|+++++.+|+++. +++.+|.+|...|++++|+.+|+++++++|++ .++..
T Consensus 4 ~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 5678899999998 9999999999999999999 99999999999999999999999999999998 55432
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
+.+.+++..|++++..+|+++
T Consensus 75 --------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --------HHHHHHHHHHCCTTHHHHCCS
T ss_pred --------HHHHHHHHHHHHHhccCcccc
Confidence 137888999988888777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-09 Score=98.55 Aligned_cols=181 Identities=11% Similarity=0.015 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH-HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK-NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEES 159 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A 159 (331)
+.....|++++...|..+..|+..+..+...|+.++|. ..|.+++...|.+ ..|..++......| +++.|
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~--------~~e~a 397 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT--------KIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence 34668899999999999999999999999999999997 9999999999988 66778888888776 48899
Q ss_pred HHHHHHHhcCC-----------CC-----------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 160 IQHAKEAITLD-----------VK-----------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 160 ~~~~~~al~~~-----------p~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
..+|++++... |. .+.+|...+.+.... |..+.|...|.+|++.. .+.
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~---------~~l~~AR~vf~~A~~~~-~~~ 467 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI---------QGLAASRKIFGKCRRLK-KLV 467 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHHTG-GGS
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhc-CCC
Confidence 99999988742 42 345788888888877 89999999999999841 245
Q ss_pred ChhHHhhHHHHHHHhhc-HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 218 NPDLYFNCATVNKYLEN-YERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
...+|...|.+....++ ++.|...|+++++..|+++.. ...+......|+.+.|...|.+|..
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67778888887777654 999999999999999998887 6778888888888888877777664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-09 Score=79.99 Aligned_cols=129 Identities=15% Similarity=0.011 Sum_probs=99.5
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHH
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVE 157 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 157 (331)
+++ ++|+.+|+++.+.....+ . +|.+|...+..++|+.+|+++.+.. +..+++++|.++..-. . ..++++
T Consensus 9 ~d~-~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g-~~~a~~~Lg~~y~~G~-g---~~~d~~ 78 (138)
T 1klx_A 9 KDL-KKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGK-Y---VKKDLR 78 (138)
T ss_dssp HHH-HHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCS-S---SCCCHH
T ss_pred cCH-HHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHcCC-C---CCccHH
Confidence 565 899999999998874444 4 9999999999999999999998872 2388999999988610 0 013599
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
+|+.+|+++.+. .++.++++||.+|..- ..-.+++++|+.+|+++.+ ..++.+..+++.
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G-----~g~~~d~~~A~~~~~~Aa~----~g~~~A~~~l~~ 137 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYAG-----KGVVKNEKQAVKTFEKACR----LGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHT-----SSSCCCHHHHHHHHHHHHH----TTCHHHHHHC--
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHCC-----CCCCcCHHHHHHHHHHHHH----CCCHHHHHHHhh
Confidence 999999999886 6789999999999871 0011899999999999987 456666666553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=80.13 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=95.2
Q ss_pred CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcC
Q 020060 113 GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTG 192 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 192 (331)
+++++|+.+|+++.+..... +. +|.++...+ .+++|+.+|+++.+. .++.++++||.+|..-
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-a~--lg~~y~~g~--------~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G----- 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-GC--LSLVSNSQI--------NKQKLFQYLSKACEL--NSGNGCRFLGDFYENG----- 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-HH--HHHHTCTTS--------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHcCCCHh-hh--HHHHHHcCC--------CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC-----
Confidence 46899999999999887443 33 888877554 377799999999886 6789999999999871
Q ss_pred CCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCC
Q 020060 193 SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDP 250 (331)
Q Consensus 193 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 250 (331)
....+++++|+.+|+++.+ ..++.+++++|.+|.. .+++++|+.+|+++.+...
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~----~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACG----LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCccHHHHHHHHHHHHc----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 0012899999999999987 5789999999999999 8999999999999988743
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-08 Score=86.89 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhcc---CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc
Q 020060 116 PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQ---GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~---~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 191 (331)
.+|+.+|+++++++|+. .++..++.++..... ...........+... ..++..+|.++.++..++..+...
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~---- 290 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVK---- 290 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhC----
Confidence 45555566666666555 444444444432110 000011112333331 134567799999999999988888
Q ss_pred CCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|++++|+..+++++.++ | +...|..+|.++...|++++|...|.+|+.++|..+.
T Consensus 291 -----gd~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 -----GKTDESYQAINTGIDLE--M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp -----TCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred -----CCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999965 5 4677889999999999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-09 Score=73.27 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh-HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD-LYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+..|.++... |++++|+..|+++++.. |.++. +++++|.++..+|++++|+.+|++++.++|++...
T Consensus 3 ~~~~a~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQ---------GDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHH---------TCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 35678888888 99999999999999955 99999 99999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 256 EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.. .+.+.+++..|.++..+.+
T Consensus 72 ~~-------~~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 72 QA-------RKMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HH-------HHHHHHHHHHHCCTTHHHH
T ss_pred HH-------HHHHHHHHHHHHHHhccCc
Confidence 21 1677778888888776655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=87.19 Aligned_cols=157 Identities=6% Similarity=-0.100 Sum_probs=113.7
Q ss_pred HHhcCCCh-H--HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 125 ALSKGPNK-K--ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 125 al~~~~~~-~--~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
+....|.+ . -++..|..+...+ ....+.+|+.+|+++++++|+++.+|-.++.+|... ...+.+.......
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~-----~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHG-----DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-HSQHPLDEKQLAA 259 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHC-----SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCCCHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hccCCCchhhHHH
Confidence 33445555 2 2334455554443 224589999999999999999999999999998844 2222222223322
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.-..+..+......|.++.++..+|..+...|++++|+.++++++.++|+......+|.++...|++++|+..|.+|.++
T Consensus 260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22333333333345889999999999999999999999999999999986332388899999999999999999999999
Q ss_pred HHHHhh
Q 020060 282 ASLASS 287 (331)
Q Consensus 282 ~~~~~~ 287 (331)
.|....
T Consensus 340 ~P~~~t 345 (372)
T 3ly7_A 340 RPGANT 345 (372)
T ss_dssp SCSHHH
T ss_pred CCCcCh
Confidence 876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.9e-09 Score=93.68 Aligned_cols=125 Identities=6% Similarity=-0.089 Sum_probs=103.8
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhc-----CCC---cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-----CCh---
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKL-----NPS---LADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-----PNK--- 132 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~--- 132 (331)
..+..+...|+| ++|+..+++++++ .|+ ...++.++|.+|..+|+|++|+.++++++++. |++
T Consensus 314 e~a~~~~~qg~~-~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLY-HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHTTTCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 344557789998 9999999999985 344 46788999999999999999999999999763 444
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-----CCCCch---hHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-----DVKDGN---SWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
..+.++|.++..+| ++++|+..+++|+++ .|++|. ....++.++..+ +.+++|.
T Consensus 393 a~~l~nLa~~~~~~G--------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~---------~~~~~ae 455 (490)
T 3n71_A 393 GMAVMRAGLTNWHAG--------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL---------RMFRQNE 455 (490)
T ss_dssp HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 67889999999887 499999999999873 566654 557888899888 9999999
Q ss_pred HHHHHHHh
Q 020060 204 KAYQNAEK 211 (331)
Q Consensus 204 ~~~~~al~ 211 (331)
..|.++.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=91.06 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=104.5
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcC-----CCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-----
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALSKG-----PNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----- 169 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----- 169 (331)
..+..+..+|+|++|+..+++++++. |++ ..+.++|.+|..+| +|++|+.++++++++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g--------~~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ--------AYEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHHc
Confidence 34455778999999999999999763 444 67888999999887 499999999999874
Q ss_pred CCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc---hhcCCChhH---HhhHHHHHHHhhcHHHHHH
Q 020060 170 DVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD---ERMKSNPDL---YFNCATVNKYLENYERALS 240 (331)
Q Consensus 170 ~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~---~~~la~~~~~~g~~~~A~~ 240 (331)
.|++ ...+++||.+|... |++++|+..|++++.. ...|++|.+ ..+++.++..++.+.+|..
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~---------G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHA---------GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45789999999999 9999999999999962 123666644 7889999999999999999
Q ss_pred HHHHHHhc
Q 020060 241 GFEASALK 248 (331)
Q Consensus 241 ~~~~al~~ 248 (331)
.|.++.+-
T Consensus 457 ~~~~~~~~ 464 (490)
T 3n71_A 457 MYHKMREA 464 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-08 Score=74.16 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHh
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYL 232 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~ 232 (331)
.....+.+.|.+.+..+|.+.++.+++|+++... ...++.++++..++.+++.. .| .+.+++|++|..++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S------~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRS------KYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHc
Confidence 3477788888888888899999999999999986 12248899999999999832 14 5688999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCcHHH
Q 020060 233 ENYERALSGFEASALKDPSLNATE 256 (331)
Q Consensus 233 g~~~~A~~~~~~al~~~~~~~~~~ 256 (331)
|+|++|..+++++++++|++..+.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999998663
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.4e-08 Score=67.30 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=63.8
Q ss_pred chhhHHHHHhhhhhhcccc---cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 61 TQRATYEYLKGKILDVVPE---YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+..+.++..+|.+++..++ . ++|..+++++++++|+++.++..+|..++..|+|++|+.+|+++++.+|..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~-~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMT-DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4557788888988875544 5 899999999999999999999999999999999999999999999999984
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.2e-08 Score=65.66 Aligned_cols=78 Identities=6% Similarity=-0.125 Sum_probs=67.7
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
+|+++..+..+|.++... + +....++|...++++++.+ |+++.+++.+|..++..|+|++|+.+|++++..+
T Consensus 2 ~p~~~~~~~~~a~al~~~----~--~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYL----H--KQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHT----T--TTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHh----c--CCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 688999999999999755 0 0123699999999999955 9999999999999999999999999999999999
Q ss_pred CCCcHH
Q 020060 250 PSLNAT 255 (331)
Q Consensus 250 ~~~~~~ 255 (331)
|..+..
T Consensus 74 p~~~~~ 79 (93)
T 3bee_A 74 DPNLDR 79 (93)
T ss_dssp CTTCCH
T ss_pred CCCccH
Confidence 995543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.4e-07 Score=74.11 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC-hhHHhhHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN-PDLYFNCATV 228 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~ 228 (331)
......+|...++++++++|+ ++.+|..+|.+|...+-..+ |+.++|..+|++++.++ |+. ...++.+|..
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g----Gd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~ 248 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG----GGMEKAHTAFEHLTRYC--SAHDPDHHITYADA 248 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT----CCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC----CCHHHHHHHHHHHHHhC--CCCCchHHHHHHHH
Confidence 335688999999999999999 67899999999998643334 99999999999999966 975 9999999999
Q ss_pred HHH-hhcHHHHHHHHHHHHhcCCCC
Q 020060 229 NKY-LENYERALSGFEASALKDPSL 252 (331)
Q Consensus 229 ~~~-~g~~~~A~~~~~~al~~~~~~ 252 (331)
+.. .|++++|..++++++..+|..
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 988 599999999999999988874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-07 Score=64.41 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=66.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
+.-++.+|..++..++| ..|+..|++|++.. +..+.++..+|.++...|+++.|+.++++++++.|++ .++
T Consensus 5 a~dc~~lG~~~~~~~~y-~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccch-HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45678999999999999 99999999999863 3468899999999999999999999999999999999 666
Q ss_pred hhHH
Q 020060 136 CQLS 139 (331)
Q Consensus 136 ~~l~ 139 (331)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6666
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=64.87 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=66.2
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-----cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-----MKSNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
++.-.+.+|..++.. |+|..|+.+|+.+++... .+..+.++.++|.++..+|+++.|+.++++++.
T Consensus 4 sa~dc~~lG~~~~~~---------~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTE---------ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc---------cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345678999999999 999999999999998421 123467799999999999999999999999999
Q ss_pred cCCCCcHH-HHHH
Q 020060 248 KDPSLNAT-EEVQ 259 (331)
Q Consensus 248 ~~~~~~~~-~~l~ 259 (331)
++|++... .+++
T Consensus 75 l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 75 LDPEHQRANGNLK 87 (104)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCHHHHhhHH
Confidence 99999876 5554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.6e-07 Score=66.86 Aligned_cols=92 Identities=9% Similarity=0.104 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC---ChhHHHHHHHHHHhcC-CCh--HHHhhHHHHHHHhccCchhHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG---DLPAAKNCFNLALSKG-PNK--KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~--~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..+...|.+.+..+|.+.++.+++|+++.+.+ +.++++..++.+++.+ |.. ++++++|..+.++|+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~-------- 86 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------- 86 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC--------
Confidence 56677777777777888888888888888877 5668888888888887 633 788888888887764
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLG 181 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~ 181 (331)
|++|..+++++++.+|++..+.....
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 88888888888888888876654443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-07 Score=82.81 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcC-----CCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc---hhcCCChhH--
Q 020060 155 IVEESIQHAKEAITL-----DVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD---ERMKSNPDL-- 221 (331)
Q Consensus 155 ~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~-- 221 (331)
++++|+..+++++++ .|+++ .++.+||.+|..+ |+|++|+.++++++.. ...|++|++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~---------g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM---------QDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 589999999999873 45554 5688999999998 9999999999999962 123666655
Q ss_pred -HhhHHHHHHHhhcHHHHHHHHHHHHhc-----CCCCcHH
Q 020060 222 -YFNCATVNKYLENYERALSGFEASALK-----DPSLNAT 255 (331)
Q Consensus 222 -~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 255 (331)
++++|.+|..+|++++|..+|++|+.+ .|+++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 899999999999999999999999985 6777754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-05 Score=71.06 Aligned_cols=151 Identities=6% Similarity=-0.090 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH------HHh------cc-
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE------RSM------AQ- 147 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~------~~~------g~- 147 (331)
+.....|++++...|..+..|...+..+...|+.+.|...|++++.. |.+ ..+...+... ..+ +.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 44678999999999999999999999999999999999999999999 987 4444333220 000 00
Q ss_pred ------C-------------chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh-hHHHHHHHHH
Q 020060 148 ------G-------------SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS-KLLQSLKAYQ 207 (331)
Q Consensus 148 ------~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~ 207 (331)
. .....+..+.|...|.++ ...+.....|...+.+-... + +.+.|...|+
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~---------~~d~~~ar~ife 344 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA---------TGSRATPYNIFS 344 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH---------HCCSHHHHHHHH
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH---------CCChHHHHHHHH
Confidence 0 000123456677777777 32222333444444444333 3 4677777777
Q ss_pred HHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 208 NAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 208 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
.+++. .|+++..+...+......|+.+.|...|+++
T Consensus 345 ~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 345 SGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77763 3666766666666667777777777777776
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.9e-07 Score=79.02 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhcC-----CCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc---hhcCCChhH-
Q 020060 154 EIVEESIQHAKEAITL-----DVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD---ERMKSNPDL- 221 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~- 221 (331)
+++++|+..+++++++ .|+++ .++.++|.+|..+ |+|++|+.++++++.. ...|.+|..
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~---------g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL---------GLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3599999999999975 34554 5788999999988 9999999999999962 123666655
Q ss_pred --HhhHHHHHHHhhcHHHHHHHHHHHHhc-----CCCCcHH
Q 020060 222 --YFNCATVNKYLENYERALSGFEASALK-----DPSLNAT 255 (331)
Q Consensus 222 --~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 255 (331)
++++|.+|..+|++++|..+|++|+.+ .|+++..
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 899999999999999999999999985 6787764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.1e-06 Score=68.40 Aligned_cols=191 Identities=9% Similarity=-0.005 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--------------CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhcc
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKK--------------GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQ 147 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~ 147 (331)
.-.+..++-.+..+|++.......|..|..= ..++....-+.++.++.....-|...+.+...-|
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~- 127 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPG- 127 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence 4466777788889999987777766665432 1233333445555443322211111121111111
Q ss_pred CchhHHHHHHHHHH-----HHHH-HhcCCCCCchhHHHHHHHHHhhhhh-cCC-CChhhHHHHHHHHHHHHhchhcCC--
Q 020060 148 GSENQAEIVEESIQ-----HAKE-AITLDVKDGNSWYNLGNACLTSFFV-TGS-WDHSKLLQSLKAYQNAEKDERMKS-- 217 (331)
Q Consensus 148 ~~~~~~~~~~~A~~-----~~~~-al~~~p~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~A~~~~~~al~~~~~~~-- 217 (331)
+.+++. -+.. .-+.+|++++.++-.|.+.....-. .+. ...+....|...++++++++ |.
T Consensus 128 --------~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~ 197 (301)
T 3u64_A 128 --------FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQ 197 (301)
T ss_dssp --------HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHH
T ss_pred --------HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcc
Confidence 222221 1222 3346788888888888877654332 122 24478899999999999966 88
Q ss_pred ChhHHhhHHHHHHHh-----hcHHHHHHHHHHHHhcCCCC-cHH-HHHHHHHHH-HHHHHHHHHhhhhhhhHHH
Q 020060 218 NPDLYFNCATVNKYL-----ENYERALSGFEASALKDPSL-NAT-EEVQMMVNL-LDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 218 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~-~~l~~~~~~-l~~~~~a~~~~~~a~~l~~ 283 (331)
+..+|..+|.+|... |+.++|..+|+++++++|+. ... ..++..+.. .++.+++...+.+++...+
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 777999999999995 99999999999999999975 777 888988877 4889999988888876443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-06 Score=76.41 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHH
Q 020060 36 SKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGS 107 (331)
Q Consensus 36 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 107 (331)
.+....+++++.+...+... ..+..+.++.++|.+|..+|+| ++|+.++++++.+ +|+.+..+.++|.
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~---~Hp~~a~~~~nLa~~y~~~g~~-~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFED---SNVYMLHMMYQAMGVCLYMQDW-EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCT---TSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccCh---hchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34556677788887777644 7788899999999999999998 9999999999975 3445678999999
Q ss_pred HHHHhCChhHHHHHHHHHHhcC
Q 020060 108 CIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+|..+|++++|+.+|++|+++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHH
Confidence 9999999999999999998763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.9e-06 Score=73.40 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIW 110 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~ 110 (331)
...+++++.+...+... ..+..+.++.++|.+|..+|+| ++|+.++++++.+ +|..+..++++|.+|.
T Consensus 307 ~~~~~~~L~~~~~~lg~---~h~~~~~~~~~L~~~y~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 307 LAMCQAIISSNSERLPD---INIYQLKVLDCAMDACINLGLL-EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHTCSSCCCCT---TSHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcCCc---cchHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 34445555555555433 6778899999999999999998 9999999999975 3444668899999999
Q ss_pred HhCChhHHHHHHHHHHhc-----CCCh----HHHhhHHHHHHH
Q 020060 111 KKGDLPAAKNCFNLALSK-----GPNK----KILCQLSMLERS 144 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al~~-----~~~~----~~~~~l~~~~~~ 144 (331)
.+|++++|+.+|++++++ .|++ ..+.+++.+...
T Consensus 383 ~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 383 HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999876 3554 344445555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00034 Score=63.36 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH------hh-
Q 020060 116 PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL------TS- 187 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------~~- 187 (331)
+.....|++++...|.. ..|...+..+...| +.+.|..++++|+.. |.+...|...+.... ..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~--------~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG--------QKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHH
Confidence 34567999999999988 88999988888766 489999999999999 998777765544310 00
Q ss_pred ----------------------hhhcCC--CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh-cHHHHHHHH
Q 020060 188 ----------------------FFVTGS--WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE-NYERALSGF 242 (331)
Q Consensus 188 ----------------------~~~~~~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~ 242 (331)
+..... ...+..+.|...|.++ +. .+....+|...|.+....+ +++.|...|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000000 0025678888999999 42 2345667777777777777 599999999
Q ss_pred HHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 243 EASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 243 ~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
+.+++..|+.+.. .........+|+.+.+.
T Consensus 344 e~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 344 SSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999987754 44455555555544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.28 E-value=8.4e-06 Score=58.30 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHhh
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYLE 233 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g 233 (331)
....+...|.+....++....+.+++|+++... ....+..+++..++..++.. .| ...+.++.+|..++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S------~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT------RYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 466777777777777778889999999999876 13356667999999988732 13 45677999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNATEEVQ 259 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~~~l~ 259 (331)
+|.+|..+++..+++.|++..+..+-
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999874443
|
| >2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.8e-06 Score=61.86 Aligned_cols=75 Identities=31% Similarity=0.535 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHH--HhhhhhhhHHHHHhhcccccc--------------CCCccccccchhhccCCcCceEEeEEe
Q 020060 257 EVQMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL--------------SSSHKRATVDLLSEGLNKAVAVVGKVL 320 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~--~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (331)
....++..+.+..+++ +...+++|+.++++++....+ ...++..++..|++|+|++..++++++
T Consensus 5 ~~~~ll~~L~kl~~lv~~KGklK~KRL~~~~ssL~~~~lgp~~~g~~~~~~g~~~~l~~~~l~~L~~G~N~g~vv~gKVv 84 (166)
T 2xvs_A 5 REQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVILGKVV 84 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTCCGGGGGGGTTSCEECTTSCEECCEECCGGGCCSEECTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhcchhhcCcccCcccccccCCcceeeeeeHHHcccccCCCcEEEEEEE
Confidence 3556778888999998 899999999999999999886 335678899999999999999999999
Q ss_pred EeeecCCCCCC
Q 020060 321 FFVKHENVTPL 331 (331)
Q Consensus 321 ~~~~~~~~~~~ 331 (331)
++++++..+|+
T Consensus 85 ~~i~~e~~vP~ 95 (166)
T 2xvs_A 85 FSLTTEEKVPF 95 (166)
T ss_dssp EEECCTTCCSE
T ss_pred EEecCCCCCce
Confidence 99999999995
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=52.54 Aligned_cols=92 Identities=8% Similarity=0.057 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH---HHHHHHHHHhcC-CCh--HHHhhHHHHHHHhccCchhHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA---AKNCFNLALSKG-PNK--KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-~~~--~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..+...|.+.+..++...++.+++|+++....+... ++..++..+... |.. ..++.+|..++++|+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-------- 89 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------- 89 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh--------
Confidence 445566666666666667777777777777666555 777777777665 423 677777777777763
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLG 181 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~ 181 (331)
|.+|..+++..++..|++..+.....
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77777777777777777766654433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0019 Score=58.57 Aligned_cols=161 Identities=9% Similarity=-0.052 Sum_probs=124.5
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHhC---------ChhHHHHHHHHHHhc--CCChHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKL--NPSLADAWLCLGSCIWKKG---------DLPAAKNCFNLALSK--GPNKKI 134 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~--~~~~~~ 134 (331)
...=..+...|+. ++|+..|++.... .| +..+|..+-.++...+ ..+.|...|.+.... .|+...
T Consensus 30 ~~~id~c~k~G~~-~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 30 KQKLDMCSKKGDV-LEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHTTTSCCH-HHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3333567788996 9999999998775 34 4556666655655443 368899999987655 466677
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD-VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+..+-..+...| ++++|..++++..+.. +-+..+|..+-..|... |+.++|...|+...+..
T Consensus 108 yn~lI~~~~~~g--------~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~---------g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 108 FTNGARLAVAKD--------DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK---------GDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC---------CCHHHHHHHHHHHHhcC
Confidence 778888888776 5999999999987753 23567888888888888 99999999999988753
Q ss_pred hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 214 RMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 214 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
..-+...|..+-..+.+.|+.++|...|++....
T Consensus 171 -~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 171 -VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 2335567889999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00062 Score=61.73 Aligned_cols=169 Identities=9% Similarity=-0.031 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC--CChHHHhhHHHHHHHhccCc-hhHHHHHHHHHHHHHHHhcCC-CCCchh
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKG--PNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLD-VKDGNS 176 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~~~-p~~~~~ 176 (331)
.+..+-..+.+.|+.++|+..|++..+.. |+...+..+-.++...+... ....+.+++|.+.|.+..... +-+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 35555677889999999999999988654 55555555544444332211 112346899999999887653 235678
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc--CCCCcH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK--DPSLNA 254 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 254 (331)
|..+-..|... |++++|...|++..+... .-+...|..+-..|.+.|+.++|...|+..... .|+...
T Consensus 108 yn~lI~~~~~~---------g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 108 FTNGARLAVAK---------DDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHHH---------TCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhc---------CCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 88899999988 999999999999887432 336677888999999999999999999998875 455444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 255 TEEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 255 ~~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
...+-..+...|+.++|.+.+.+-+
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4777788889999999987766543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00059 Score=48.92 Aligned_cols=80 Identities=11% Similarity=0.045 Sum_probs=66.8
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
-.+.+.+++|+++... ....+..+++..++..++.. | ...+.++.+|..++++|+|.+|..+.+..+++.|
T Consensus 38 vs~qt~F~yAw~Lv~S------~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKS------TDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHS------SCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3567889999998876 13367789999999999843 6 4568899999999999999999999999999999
Q ss_pred CCcHHHHHH
Q 020060 251 SLNATEEVQ 259 (331)
Q Consensus 251 ~~~~~~~l~ 259 (331)
++..+..+-
T Consensus 110 ~N~QA~~Lk 118 (134)
T 3o48_A 110 NNKQVGALK 118 (134)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999874443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00086 Score=48.71 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 171 VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 171 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
.-.+.+.+++++++... ....+..+++..++..++.. | ...+.++.+|..++++|+|.+|..+.+..+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S------~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS------TDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHS------SSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45778899999999876 13467789999999999843 6 456789999999999999999999999999999
Q ss_pred CCCcHHHHHH
Q 020060 250 PSLNATEEVQ 259 (331)
Q Consensus 250 ~~~~~~~~l~ 259 (331)
|++.++..+-
T Consensus 108 P~n~QA~~Lk 117 (144)
T 1y8m_A 108 RNNKQVGALK 117 (144)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 9998764443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00074 Score=49.46 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=84.4
Q ss_pred hcCCCcHHHHHHHHHHHHHhCCh------hHHHHHHHHHHhcCCCh--H-------HHhhHHHHHHHhccCchhHHHHHH
Q 020060 93 KLNPSLADAWLCLGSCIWKKGDL------PAAKNCFNLALSKGPNK--K-------ILCQLSMLERSMAQGSENQAEIVE 157 (331)
Q Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~~~~--~-------~~~~l~~~~~~~g~~~~~~~~~~~ 157 (331)
-+.|++++.|..........|+. +.-++.|++|+..-|-. . .|...+.. . ..++.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~--------ei~D~d 77 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-K--------AIQEPD 77 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-H--------HHHCGG
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-H--------HhcCHH
Confidence 45799999999999999999999 89999999999887654 2 23333322 2 225688
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+|...|+.++.+....+.+|...|..-.+. |+...|...+.+++... |....
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq---------gnl~kARkILg~AiG~~--~k~~~ 129 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQ---------GNVKKSKQLLQKAVERG--AVPLE 129 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTT--CBCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHhccC--CCcHH
Confidence 999999999888777788888888888887 99999999999999855 65544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0065 Score=43.53 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=59.7
Q ss_pred HHHHHhhhhhhccccc--HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 65 TYEYLKGKILDVVPEY--RKDAEDHLSKAVKLNPS-LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~--~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.+-+..|.++....+- ..+++..+...++.+|. .-+.++.+|..+++.|+|+.|..+.+.++++.|++ .+......
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4455555555544321 26899999999998884 47899999999999999999999999999999999 55444433
Q ss_pred H
Q 020060 141 L 141 (331)
Q Consensus 141 ~ 141 (331)
+
T Consensus 121 I 121 (134)
T 3o48_A 121 V 121 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0059 Score=44.73 Aligned_cols=113 Identities=10% Similarity=-0.017 Sum_probs=85.7
Q ss_pred cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC--------chhHHHHHHHHHhhhhhcCCCChhh
Q 020060 128 KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--------GNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 128 ~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
+.|.+ +.|.......-..|+...+ +-.++-...|++|+..-|.. ...|...+.. ... ++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d--~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei---------~D 75 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSD--ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI---------QE 75 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCH--HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH---------HC
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchh--hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh---------cC
Confidence 46666 7888877777766765544 44678888999998765532 2344445533 344 89
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.++|...|+.+++. ....+.+|...|..-.++|+...|.+.+.+|+.+.|....
T Consensus 76 ~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 76 PDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp GGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 99999999999985 3666888999999999999999999999999999998653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0028 Score=47.42 Aligned_cols=82 Identities=9% Similarity=0.126 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCCCch---------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-cCC-------
Q 020060 155 IVEESIQHAKEAITLDVKDGN---------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-MKS------- 217 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~------- 217 (331)
.|+.|+-....++....+++. ++..+|.+++.. ++|..|...|++++.... .+.
T Consensus 35 LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~---------~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 35 LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD---------KEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHCC---------
T ss_pred hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc---------cHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 488888888887765443333 678899999988 999999999999986321 011
Q ss_pred ---------------ChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 218 ---------------NPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 218 ---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
+.++.+.++.||..+|++.+|+..++..
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1256788999999999999999887653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.017 Score=41.91 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=58.1
Q ss_pred hHHHHHhhhhhhccccc--HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 64 ATYEYLKGKILDVVPEY--RKDAEDHLSKAVKLNPS-LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~--~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
..+.+..+.++....+- ..+++..++..+...|. .-+.++.+|..+++.|+|++|..+.+..++..|++ .+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 44555666666554431 36899999999998884 56899999999999999999999999999999998 443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0059 Score=45.64 Aligned_cols=109 Identities=10% Similarity=0.014 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC---CCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKG---PNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
+++.-.......|.|+.|+.....++.+. |+. .++..+|.+++..+ +|..|...|+++++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~--------eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK--------EYRNAVSKYTMALQQK 93 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHH
Confidence 44555666778888999988888876554 221 46788999999776 4999999999986531
Q ss_pred ---CCC----------------------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 171 ---VKD----------------------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 171 ---p~~----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
++. .++.+.++.||..+ +++.+|+..++.+- .....+.+...|
T Consensus 94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l---------~~~~~Ai~~Le~Ip---~k~Rt~kvnm~L 161 (167)
T 3ffl_A 94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL---------KQDKDAIAILDGIP---SRQRTPKINMLL 161 (167)
T ss_dssp HCC--------------------CCCCHHHHHHHHHHHHHHT---------TCHHHHHHHHHTSC---GGGCCHHHHHHH
T ss_pred HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH---------CCHHHHHHHHhcCC---chhcCHHHHHHH
Confidence 111 15778899999999 99999999988653 225677777777
Q ss_pred HHHH
Q 020060 226 ATVN 229 (331)
Q Consensus 226 a~~~ 229 (331)
|..|
T Consensus 162 akLy 165 (167)
T 3ffl_A 162 ANLY 165 (167)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.033 Score=48.43 Aligned_cols=163 Identities=9% Similarity=0.045 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---h---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN---K---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+.+.+|..|...|++++-..++.......+. . .....+-..+..... ..+.-++.+.++++...+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~ 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA-------GTGIEVQLCKDCIEWAKQE 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC-------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777666666655333221 1 111222222222211 1222233333333322222
Q ss_pred chhH------HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 174 GNSW------YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 174 ~~~~------~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
-..| ..+|..|+.. |+|.+|...+.+..+.....++. +++.....+|..++++.++..++.
T Consensus 93 ~r~flr~~l~~kL~~l~~~~---------~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDT---------ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2333 2689999988 99999999999988743223333 447788889999999999999999
Q ss_pred HHHhcCC---CCcH---H--HHHHHHHH-HHHHHHHHHHhhhhh
Q 020060 244 ASALKDP---SLNA---T--EEVQMMVN-LLDKIENLLKGHAKT 278 (331)
Q Consensus 244 ~al~~~~---~~~~---~--~~l~~~~~-~l~~~~~a~~~~~~a 278 (331)
++..... .++. . ..-|..+. ..+++..|...|.++
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 9987542 2222 1 44444555 566666666555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.02 Score=53.99 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=78.2
Q ss_pred hCC-hhHHHHHHHHHHhcCCChHHHhhHHHHHH--HhccCchhHHHHHHHHHHHHHHHhc--------CCCCCc------
Q 020060 112 KGD-LPAAKNCFNLALSKGPNKKILCQLSMLER--SMAQGSENQAEIVEESIQHAKEAIT--------LDVKDG------ 174 (331)
Q Consensus 112 ~g~-~~~A~~~~~~al~~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~A~~~~~~al~--------~~p~~~------ 174 (331)
.+. ++.|+..+++..+.+|....++..+.+.. ..+. +--+|+..+.++++ ..+.+.
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~-------~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIET-------KELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGG-------GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 444 57789999999888887755444433322 1111 12345555555442 222221
Q ss_pred ----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 175 ----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 175 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
..+..-+..+... |+++-|+.+.++++.. .|.+-..|+.|+.+|..+|+|+.|+-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K---------~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNR---------GDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhcc---------CcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1223334445555 9999999999999994 4999999999999999999999999877665
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.067 Score=48.05 Aligned_cols=77 Identities=17% Similarity=0.043 Sum_probs=65.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
++..+|.+......+ ..|..+|.+|+.+.|+....+..||.+....|+.-+|+-+|.+++...... .+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~-~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQT-SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 556678887777886 899999999999999999999999999999999999999999998765333 66666666554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.087 Score=47.34 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+..||.+.... ..+..|..+|.+|.... |.+...|+.+|.+....|+.-+|+-+|.+++....-.+.+
T Consensus 154 ~l~~LGDL~RY~---------~~~~~A~~~Y~~A~~~~--P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 154 CLVHLGDIARYR---------NQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHcccHHHHH---------HHHHHHHHHHHHHHHhC--CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhH
Confidence 445677777766 77899999999999955 9999999999999999999999999999999876666665
Q ss_pred -HHHHHHHHH
Q 020060 256 -EEVQMMVNL 264 (331)
Q Consensus 256 -~~l~~~~~~ 264 (331)
.++..++..
T Consensus 223 ~~nL~~~f~~ 232 (497)
T 1ya0_A 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 777666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.092 Score=49.58 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=80.9
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HhCChhHHHHHHHHHHhc--------CCCh-----------H
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIW---KKGDLPAAKNCFNLALSK--------GPNK-----------K 133 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--------~~~~-----------~ 133 (331)
..+++.+.|+..+++....+|.... ++..+.+.. ...+--+|+....++++- .+.+ .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455337799999999999886543 333333222 123345677777777642 1221 1
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+..-+..+... ++++-|+++.++|+...|..-..|..|+.+|..+ |+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K--------~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l---------~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNR--------GDYELALGVSNTSTELALDSFESWYNLARCHIKK---------EEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh---------ccHHHHHHHHhcC
Confidence 222234444433 4699999999999999999999999999999999 9999999888766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.18 Score=38.30 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
|+++.|.+..+.. ++...|..||...+.. |+++-|..+|.++-
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~---------gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQ---------GNASLAEMIYQTQH 61 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHc---------CChHHHHHHHHHhC
Confidence 3588888887765 5678999999999988 99999999999864
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.16 Score=41.20 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=55.2
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.+...|+. ++|++.....++.+|.++.....+...++-.|+++.|...++.+.+++|..
T Consensus 6 ~ll~~g~L-~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQL-QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCH-HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCH-HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35567885 999999999999999999999999999999999999999999999999997
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.52 E-value=1.1 Score=33.86 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=64.4
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHH
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
...|++ +.|.+..++. ++...|..+|......|+++-|..+|.++-. +..+..+|...|+
T Consensus 16 L~lg~l-~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~------- 75 (177)
T 3mkq_B 16 LEYGNL-DAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGD------- 75 (177)
T ss_dssp HHTTCH-HHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTC-------
T ss_pred HhcCCH-HHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCC-------
Confidence 456886 8899887665 6688999999999999999999999998621 2233344444442
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+.-.+..+.+.... -++....+++.+ |+++++++.|.+.
T Consensus 76 -~e~L~kla~iA~~~g-----~~n~af~~~l~l---------Gdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 -VNKLSKMQNIAQTRE-----DFGSMLLNTFYN---------NSTKERSSIFAEG 115 (177)
T ss_dssp -HHHHHHHHHHHHHTT-----CHHHHHHHHHHH---------TCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHCc-----cHHHHHHHHHHc---------CCHHHHHHHHHHC
Confidence 333333333333222 123334445555 8888888887654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.46 E-value=1.1 Score=33.55 Aligned_cols=39 Identities=8% Similarity=-0.031 Sum_probs=31.5
Q ss_pred CCChhH-HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 216 KSNPDL-YFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 216 ~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|.+.+. +..+|.++...|+.++|+.+|..+...+|-.+.
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 555554 677899999999999999999999988775443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.37 E-value=1.2 Score=33.44 Aligned_cols=171 Identities=19% Similarity=0.112 Sum_probs=105.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH--hcC-------------
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL--SKG------------- 129 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~------------- 129 (331)
+.-..++..++-.|+| ..++-++.+ -+...+.+..+.||...++|..|+.+++..+ +++
T Consensus 34 eY~lL~~I~LyyngEY-~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEY-TRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp CTHHHHHHHHHHTTCH-HHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred HHHhhhhhhhhhcchH-hHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 3445677788888998 777776633 3567788889999999999999999999998 322
Q ss_pred --CCh-H-HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh-hhh---cCCCChh----
Q 020060 130 --PNK-K-ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS-FFV---TGSWDHS---- 197 (331)
Q Consensus 130 --~~~-~-~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~---~~~~~~~---- 197 (331)
|.+ + .+..+|.++...| +.++|+.++......+|-.+.+-+.+ |... +.. +.-..+|
T Consensus 108 vd~~DkEfFy~l~a~lltq~g--------~r~EaI~y~~~Sf~~~~lf~~vEnli---yeN~vp~~~d~~~i~~~~~~~i 176 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSG--------YREEGIGHYVRSFGKSFLFSPVENLL---LENKVPQKRDKENVRQTGRRGI 176 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCCCHHHHHHHH---HTTCCCCCC-----------CH
T ss_pred eccchHHHHHHHHHHHHHHhc--------CHHHhhhHhhhhcCCccccchHHHHH---hhcCCCcccchHHHHhhhhccc
Confidence 223 2 4455899999887 48999999999988776443332111 1100 000 0000000
Q ss_pred --hHHHHHHHHHHHH-----h--chhcCCChhH-HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 198 --KLLQSLKAYQNAE-----K--DERMKSNPDL-YFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 198 --~~~~A~~~~~~al-----~--~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+-.....+...+ + .+..|+-... -.+.+..++.+|-.++...+|....+.+|..
T Consensus 177 ~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 177 EEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred hhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 1111111111111 1 0112333333 3456777888999999999999999888864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.02 E-value=0.75 Score=43.79 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 182 (331)
..+...+...|.++.|+...+ +....+.+ ...+| ++++|.+..+ ..+++..|..+|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-------~~~~~f~~---~l~~~--------~~~~A~~~~~-----~~~~~~~W~~la~ 689 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-------DQDQKFEL---ALKVG--------QLTLARDLLT-----DESAEMKWRALGD 689 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-------CHHHHHHH---HHHHT--------CHHHHHHHHT-----TCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC-------Ccchheeh---hhhcC--------CHHHHHHHHH-----hhCcHhHHHHHHH
Confidence 555666677777777765442 22222222 23333 5888888754 2356788999999
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
.+... ++++.|..+|.++-. +.....+.+.+..++......|++..|...|.+
T Consensus 690 ~al~~---------~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 690 ASLQR---------FNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHHHT---------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHc---------CCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 99988 999999999987632 111244555556666666666666666655543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.54 Score=41.48 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=74.5
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC---Ch---
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP---SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP---NK--- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~--- 132 (331)
....++..+|..|...|++ +.|.++|.++..... .-.+.+.....++...+++..+..++.++-.... +.
T Consensus 129 e~~~~~~~la~~~~~~Gd~-~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDK-DNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCC-TTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 3455778899999999998 999999999887533 3467888899999999999999999999965532 22
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
......|.++... ++|.+|...|.+++...
T Consensus 208 ~~lk~~~gl~~l~~--------r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAV--------RNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGT--------SCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh--------ChHHHHHHHHHHHhccC
Confidence 1222234444433 35999999998887644
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.89 E-value=2.9 Score=36.21 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=105.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHH-----HHHHHHHHHH-hCChhHHHHHHHHHHhcCCCh-H--
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADA-----WLCLGSCIWK-KGDLPAAKNCFNLALSKGPNK-K-- 133 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~-~-- 133 (331)
...+.+.+|..|...|++ ++-.+++......-+..+.+ -..+-..+.. .+..+.-+.....+++-..+. .
T Consensus 18 ~e~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKA-KELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHHTCH-HHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999986 77777776655443333222 2222233322 233344444444444322222 1
Q ss_pred ----HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--C----chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 134 ----ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--D----GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 134 ----~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.-..+|..+...| +|.+|.+.+.+..+.-.. + .+++..-..+|... +++.++.
T Consensus 97 lr~~l~~kL~~l~~~~~--------~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~---------~n~~k~k 159 (394)
T 3txn_A 97 LRQSLEARLIALYFDTA--------LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL---------SNLPKAR 159 (394)
T ss_dssp HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh---------ccHHHHH
Confidence 2236888888776 499998888887763211 1 23445556667766 8999999
Q ss_pred HHHHHHHhchhc-CCChhH----HhhHHHHHH-HhhcHHHHHHHHHHHHhcCCC
Q 020060 204 KAYQNAEKDERM-KSNPDL----YFNCATVNK-YLENYERALSGFEASALKDPS 251 (331)
Q Consensus 204 ~~~~~al~~~~~-~~~~~~----~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 251 (331)
..+.++...... +.+|.. ...-|..+. ..++|..|..+|-.++.-...
T Consensus 160 ~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 160 AALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 999988763222 244433 566788888 899999999999998764433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.23 Score=43.82 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhh
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLE 233 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g 233 (331)
.+++.+..+.+-......-..++..+|..|... |+++.|.+.|.++......+. -.+.+.....++...+
T Consensus 112 ~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~---------Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~ 182 (429)
T 4b4t_R 112 ELNEKIQKLEEDDEGELEQAQAWINLGEYYAQI---------GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN 182 (429)
T ss_dssp HHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHH---------CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Confidence 355555554432223344556888999999998 999999999999887442222 2366888888899999
Q ss_pred cHHHHHHHHHHHHhcC
Q 020060 234 NYERALSGFEASALKD 249 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~ 249 (331)
++..+..++.++....
T Consensus 183 d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 183 DQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhh
Confidence 9999999999987653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=1.4 Score=38.23 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=64.0
Q ss_pred HHhCChhHHHHHHHHHHhcCCCh-----------------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNK-----------------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~-----------------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
...|+.+.|...+.+++.+.... .+...++..+...| ++.+++..+..+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g--------~~~~a~~~l~~~ 197 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG--------RASAVIAELEAL 197 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 34566777777777777664221 12223344444444 599999999999
Q ss_pred hcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 167 ITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 167 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+..+|-+-.+|..+..++... |+..+|+..|++.-+
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~---------Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLS---------DRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Confidence 999999999999999999998 999999999998765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.91 Score=43.22 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=26.2
Q ss_pred HHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 109 IWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 109 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
....|+++.|.+..+. -.+...|..+|..+...| +++.|..+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~--------~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRF--------NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcC--------CHHHHHHHHHHc
Confidence 3456666666665322 122256666666666554 366666666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.52 Score=40.92 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=37.9
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
.++..+...|++ .+|+..+..++..+|-+-.+|..+-.++...|+..+|+..|+++
T Consensus 176 ~~~~~~l~~g~~-~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRA-SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566665 66777777777777777777777777777777777777776665
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.12 Score=46.33 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=13.5
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
++.+|.++...++|.+|..++..|+...|
T Consensus 273 ~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 273 FFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.67 E-value=2.2 Score=34.59 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|++++|+......++.+ |.|......+-..+.-.|+++.|.+-++.+.+++|+....
T Consensus 11 g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 11 GQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp TCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred CCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 89999999999999955 9999999999999999999999999999999999997764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.49 E-value=3.5 Score=41.26 Aligned_cols=100 Identities=12% Similarity=-0.070 Sum_probs=67.2
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCh-----------------------HHHhhHHHHHHHhcc
Q 020060 92 VKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-PNK-----------------------KILCQLSMLERSMAQ 147 (331)
Q Consensus 92 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-----------------------~~~~~l~~~~~~~g~ 147 (331)
+...|.++...+.+|.++...|++++|..+|+++-.-- .+. ..+..+..++...+
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~- 913 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES- 913 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS-
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC-
Confidence 34467777778999999999999999999999884211 110 12233444444333
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCch-----hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGN-----SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
.++.++++.+.|++..+.+.. .|.++-..+... |+|++|...+..
T Consensus 914 -------~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l---------~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 914 -------AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA---------GKFDAAHVALMV 963 (1139)
T ss_dssp -------CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH---------CCSGGGGHHHHH
T ss_pred -------CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh---------CCHHHHHHHHHh
Confidence 478888888888875543322 566666777777 888888776643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.25 E-value=9.1 Score=33.76 Aligned_cols=100 Identities=16% Similarity=-0.050 Sum_probs=74.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHhCChhHHHHHHHHHHh----cCC
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPS--LADAWLCLGSCIWKKGDLPAAKNCFNLALS----KGP 130 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~ 130 (331)
..++++...++.++...|++ .+|...+.....- .+. -.+.+.....+|...+++..|...++++.. ..+
T Consensus 134 ~erarl~~~La~i~e~~g~~-~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKI-DEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 35788888999999999998 9999999887532 111 256778888999999999999999998742 222
Q ss_pred Ch----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 131 NK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 131 ~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.. ..+...|.++..-+ +|.+|..+|.+++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~--------~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKR--------EYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHhc
Confidence 22 34445666666444 599999999988764
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.90 E-value=10 Score=34.02 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=59.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 131 (331)
+....+.++..+=+.|...+.| ++|..+..++. .|.. ...++.+|.++...++|.+|..++..|+...|.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y-~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEV-DSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCS-TTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred CcchhHHHHHHHHHHHHccCcH-HHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 5567788888899999999998 99999999985 3321 456788999999999999999999999998775
Q ss_pred h
Q 020060 132 K 132 (331)
Q Consensus 132 ~ 132 (331)
+
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.65 E-value=7.4 Score=38.21 Aligned_cols=98 Identities=8% Similarity=-0.120 Sum_probs=64.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CChHHHhh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--PNKKILCQ 137 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 137 (331)
...+..+=..|...|+. ++|...|.+.... ..-+...|..+-..|.+.|+.++|...|++..+.. |+...+..
T Consensus 127 ~~TynaLIdglcK~G~l-eeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQL-PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 33455666677777885 8888888654322 22346677778888888888888888888876543 55555655
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
+-..+.+.|. ..++|.+++++....
T Consensus 206 LI~glcK~G~-------~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQ-------DAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-------cHHHHHHHHHHHHHc
Confidence 6556665542 246777888777653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.76 E-value=9.5 Score=37.46 Aligned_cols=98 Identities=3% Similarity=-0.175 Sum_probs=74.7
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC----CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+..+-..+.+.| +.++|...|.+..+. ..-+..+|+.|-..|... |++++|.+.|++.
T Consensus 129 TynaLIdglcK~G--------~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~---------G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 129 RLLAFFKCCLLTD--------QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ---------GAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHHT--------CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHH---------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--------CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhC---------CCHHHHHHHHHHH
Confidence 4555667777665 599999999765432 233667899999999888 9999999999999
Q ss_pred HhchhcCCChhHHhhHHHHHHHhhc-HHHHHHHHHHHHhcC
Q 020060 210 EKDERMKSNPDLYFNCATVNKYLEN-YERALSGFEASALKD 249 (331)
Q Consensus 210 l~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 249 (331)
......| |...|..+-.++.+.|+ .++|...|++.....
T Consensus 192 ~~~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 192 KDAGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHTTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8754333 55667888888888887 478889999887754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.65 E-value=17 Score=36.46 Aligned_cols=92 Identities=14% Similarity=0.000 Sum_probs=67.4
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcC-----------------------CCcHHHHHHHHHHHHHhCChhHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLN-----------------------PSLADAWLCLGSCIWKKGDLPAAKNCF 122 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (331)
..|.+|.++...|++ ++|..+|+++..-- ...+..|..+..++...+.++.++.+-
T Consensus 844 ~~yl~g~~~L~~ge~-~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEA-VKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 458899999999998 99999999874211 112345667778888999999999999
Q ss_pred HHHHhcCCCh------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 123 NLALSKGPNK------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 123 ~~al~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
+.|++..+.+ ..|.++-.....+| +|++|...+...
T Consensus 923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~--------~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 923 LLADASKETDDEDLSIAITHETLKTACAAG--------KFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHC--------CSGGGGHHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhhC--------CHHHHHHHHHhC
Confidence 9999876543 24556666666666 477777766443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.44 E-value=17 Score=30.32 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=59.6
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh--
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK-- 211 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-- 211 (331)
....+..++.........+..-..+|++.-.+.=...-.++..+..+|..|... |++.+|..+|-..-.
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e---------~~~~~A~~H~i~~~~~s 164 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG---------DFVYEAERYFMLGTHDS 164 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT---------TCHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc---------CCHHHHHHHHHhCCCcc
Confidence 333444444433322222333345555554443222335788999999999988 899999887742210
Q ss_pred ------------ch---hcCCChhHHhhHHH-HHHHhhcHHHHHHHHHHHHh
Q 020060 212 ------------DE---RMKSNPDLYFNCAT-VNKYLENYERALSGFEASAL 247 (331)
Q Consensus 212 ------------~~---~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~ 247 (331)
.. ..|...+.+...+. .|...|+...|...|....+
T Consensus 165 ~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 165 MIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 00 11223344555554 45688999998888776543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.43 E-value=21 Score=31.44 Aligned_cols=190 Identities=7% Similarity=-0.038 Sum_probs=109.4
Q ss_pred cccHHHHHHHHHHHHhc---C---CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH-HhccCc
Q 020060 78 PEYRKDAEDHLSKAVKL---N---PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER-SMAQGS 149 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~---~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~-~~g~~~ 149 (331)
|++ ++|++.+...-+. . +....+...+..++...|+++...+++.-........ .+...+..... .+....
T Consensus 30 ~~~-~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDC-NSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHH-HHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCH-HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 565 7787766443332 2 3356788888999999999998888776554433222 22222221111 110000
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCC-------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC----
Q 020060 150 ENQAEIVEESIQHAKEAITLDVK-------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN---- 218 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 218 (331)
..+.+.-+......-..... .......|+.++... |++.+|...+...........+
T Consensus 109 ---~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~---------g~~~eA~~iL~~l~~Et~~~~~~~~k 176 (445)
T 4b4t_P 109 ---SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEE---------GKIDEAADILCELQVETYGSMEMSEK 176 (445)
T ss_dssp ---TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred ---chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 00011111111111111111 123446789999988 9999999999988753211222
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHh---cCCCCcH----H-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASAL---KDPSLNA----T-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~----~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
.+.+.....++...+++.+|...+.++.. -.+.++. . ...+.++...+++.+|.+.|.++..
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 25578888899999999999999999753 2233332 1 5555666666777777766666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 331 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-11 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-05 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-04 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 2e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 7e-11
Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 30/196 (15%)
Query: 79 EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQL 138
A H KAV L+P+ DA++ LG+ + + A + +
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL------RALSLSPNH 236
Query: 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA--------------- 183
+++ ++A Q I + +I + AI L +++ NL NA
Sbjct: 237 AVVHGNLACVYYEQGLI-DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 184 ---CLTSFFVTGSWDHSKLLQSLKAYQNAEKD-----ERMKSNPDLYFNCATVNKYLENY 235
L + + + + + A + E + N A+V +
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 236 ERALSGFEASALKDPS 251
+ AL ++ + P+
Sbjct: 356 QEALMHYKEAIRISPT 371
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 8e-10
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILC-QLSM 140
A D +A++L P DA+ L + + +KG + A++C+N AL P L+
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200
++R +EE+++ ++A+ + + + NL + KL
Sbjct: 314 IKREQGN--------IEEAVRLYRKALEVFPEFAAAHSNLASVL---------QQQGKLQ 356
Query: 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234
++L Y+ A + + D Y N K +++
Sbjct: 357 EALMHYKEAIRIS--PTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 1e-05
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+ AE H + + P L L S ++ L + + LA+ + P
Sbjct: 16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 1/155 (0%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141
+A AV+ +P +AW LG+ + A + L P+ + +
Sbjct: 36 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 95
Query: 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201
+ EI+ + +++ L + + S L+
Sbjct: 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE-GAGGAGLGPSKRILGSLLSDSLFLE 154
Query: 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236
+ + A + + +PD+ + Y+
Sbjct: 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.6 bits (97), Expect = 6e-05
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 1/103 (0%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-KKILCQLSM 140
+ A + L +A+K +P A + GD A ++ P QL
Sbjct: 13 QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH 72
Query: 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
L ++ + + E +T + N +
Sbjct: 73 LVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY 115
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 21/195 (10%), Positives = 47/195 (24%), Gaps = 44/195 (22%)
Query: 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN----KKILCQL- 138
+ +L +A L + D+ L + L ++ + L KK+ L
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDLW 61
Query: 139 -----SMLERSMAQGSENQAEIV------------------EESIQHAKEAITLDVKDGN 175
+ + Q + +Q +D+
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121
Query: 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235
LG + +K ++ + + +Y
Sbjct: 122 KSSQLGIISN---------KQTHTSAIVKPQSSSCS----YICQHCLVHLGDIARYRNQT 168
Query: 236 ERALSGFEASALKDP 250
+A S + +A P
Sbjct: 169 SQAESYYRHAAQLVP 183
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (89), Expect = 2e-04
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 55 EQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKG 113
E + T ++ + Y G I + L+ K S + L +K G
Sbjct: 28 EGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG 87
Query: 114 DLPAAKNCFNLALSKGP-NKKILCQLSMLERSMAQ 147
+ AK + NK++ SM+E + +
Sbjct: 88 EYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK 122
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (90), Expect = 3e-04
Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 33/235 (14%)
Query: 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD 100
+ ++ L + + + + +RA Y +G + D + A + S+A+ + P + +
Sbjct: 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL-ARNDFSQALAIRPDMPE 72
Query: 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESI 160
+ LG + + G+ AA F+ + L + + +
Sbjct: 73 VFNYLGIYLTQAGNFDAAYEAFD-------SVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125
Query: 161 QHAKEAITLDVKDGNSWYNLGNA------------------------CLTSFFVTGSWDH 196
D D L A + +
Sbjct: 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185
Query: 197 SKLLQSLKAYQNAEKDERMKSN-PDLYFNCATVNKYLENYERALSGFEASALKDP 250
S+ + +A + + + + F L + + A + F+ + +
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 0.002
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
+ + + L L++ LG GDL +A F LA++ +
Sbjct: 188 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.59 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.57 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.55 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.54 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.54 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.52 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.49 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.25 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.17 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.04 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.03 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.79 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.58 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.41 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.27 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.5 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 82.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.84 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-25 Score=191.93 Aligned_cols=231 Identities=11% Similarity=0.037 Sum_probs=160.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..++.+.. ..|..+.+|+.+|.++...|++ ++|+.+|.++++++|+++.+|..+|.+|...|++++|+
T Consensus 33 g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 107 (323)
T d1fcha_ 33 GDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 107 (323)
T ss_dssp TCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 344555555555443 2233444555555555555554 55555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCCh-HHHhhHH--HHHHHhccC-----chhHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHhhhh
Q 020060 120 NCFNLALSKGPNK-KILCQLS--MLERSMAQG-----SENQAEIVEESIQHAKEAITLDVKD--GNSWYNLGNACLTSFF 189 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~--~~~~~~g~~-----~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 189 (331)
..+.+++...|.. ..+.... .....++.. .....+.+.+|...+.+++..+|+. +.++..+|.++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-- 185 (323)
T d1fcha_ 108 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS-- 185 (323)
T ss_dssp HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT--
T ss_pred cchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH--
Confidence 5555555555543 1100000 000000000 0003356888999999999988875 46788899999998
Q ss_pred hcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHH
Q 020060 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~ 268 (331)
|++++|+..|++++... |+++.+|.++|.++..+|++++|+.+|+++++++|++..+ ..+|.++..+|++
T Consensus 186 -------~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 186 -------GEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp -------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred -------HHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence 99999999999999955 9999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHhhhhhhhHHHHHh
Q 020060 269 ENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~~ 286 (331)
++|+..|.+|+++.+...
T Consensus 257 ~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 257 REAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCcCh
Confidence 999999999999877543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.1e-23 Score=182.80 Aligned_cols=202 Identities=21% Similarity=0.238 Sum_probs=191.2
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..+..+|..+...|++ ++|+..+.+++..+|+++.++..+|.++...|++++|+..|+++....|.. ..+..+|.
T Consensus 167 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEI-WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHhhcccccccCcH-HHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHH
Confidence 4467888999999999997 999999999999999999999999999999999999999999999999988 88889999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++++|+..|+++++.+|+++.+|..+|.++... |++++|+..+++++... |.++.
T Consensus 246 ~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~ 306 (388)
T d1w3ba_ 246 VYYEQG--------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEK---------GSVAEAEDCYNTALRLC--PTHAD 306 (388)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH---------SCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHhhhccC--Cccch
Confidence 999887 499999999999999999999999999999999 99999999999999954 99999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.+..+|.++...|++++|+.+|+++++++|++... ..+|.++..+|++++|++.|.++.++.|
T Consensus 307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999988 9999999999999999999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.5e-23 Score=178.70 Aligned_cols=193 Identities=14% Similarity=0.119 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHH---------------H
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAW---------------L 103 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------------~ 103 (331)
.+++++|+..+.+... ..+.....+..+|.++...|++ ++|+..+.+++...|.....+ .
T Consensus 66 ~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (323)
T d1fcha_ 66 NEQELLAISALRRCLE----LKPDNQTALMALAVSFTNESLQ-RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 140 (323)
T ss_dssp TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred cCChHHHHHHHHhhhc----cccccccccccccccccccccc-cccccchhhHHHhccchHHHHHhhhhhhhhcccccch
Confidence 3677788888877553 2345678899999999999997 999999999999998753321 1
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
.....+...+.+.+|+..|.++++++|+. .++..+|.++...| ++++|+.++++++..+|+++.+|..+
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~l 212 (323)
T d1fcha_ 141 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--------EYDKAVDCFTAALSVRPNDYLLWNKL 212 (323)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH--------HHhhhhcccccccccccccccchhhh
Confidence 12223455677899999999999999886 67888999999887 49999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|.++... |++++|+.+|+++++.. |+++.+++++|.++..+|++++|+.+|+++++++|++...
T Consensus 213 g~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 213 GATLANG---------NQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred hhccccc---------ccchhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence 9999999 99999999999999955 9999999999999999999999999999999999987764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.1e-23 Score=182.82 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=175.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
....++..+|.++...|++ ++|+..+.+++...|..+..+..+|.++...|++++|+.+|+++++++|++ .++..+|.
T Consensus 201 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T d1w3ba_ 201 NFLDAYINLGNVLKEARIF-DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred ccHHHHHHHhhhhhccccH-HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567889999999999998 999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++++|+..++.++...|.++..+..+|.++... |++++|+..|+++++.. |+++.
T Consensus 280 ~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~ 340 (388)
T d1w3ba_ 280 ALKEKG--------SVAEAEDCYNTALRLCPTHADSLNNLANIKREQ---------GNIEEAVRLYRKALEVF--PEFAA 340 (388)
T ss_dssp HHHHHS--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---------TCHHHHHHHHHHHTTSC--TTCHH
T ss_pred HHHHcC--------CHHHHHHHHHhhhccCCccchhhhHHHHHHHHC---------CCHHHHHHHHHHHHHhC--CCCHH
Confidence 999887 499999999999999999999999999999988 99999999999999955 99999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
+++++|.++..+|++++|+.+|+++++++|+++.+ .++|.++..+|
T Consensus 341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999988 89998887665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.5e-23 Score=178.22 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=167.9
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.+....++..+|.++...+.+ ++|+.++.++++++|++..+|..+|.++...| ++++|+.+++++++.+|++ .+|..
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~-~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~ 117 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456778888899999999998 99999999999999999999999999999876 5899999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++..+| ++++|+.++.++++++|++..+|.++|.++... |++++|+.+|+++++.+ |.
T Consensus 118 ~~~~~~~l~--------~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~---------~~~~~Al~~~~~al~~~--p~ 178 (315)
T d2h6fa1 118 RRVLVEWLR--------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEF---------KLWDNELQYVDQLLKED--VR 178 (315)
T ss_dssp HHHHHHHHT--------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCCTTHHHHHHHHHHHC--TT
T ss_pred HhHHHHhhc--------cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHC--Cc
Confidence 999999887 499999999999999999999999999999999 99999999999999955 99
Q ss_pred ChhHHhhHHHHHHHhhc------HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 218 NPDLYFNCATVNKYLEN------YERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
+..+|+++|.++...+. +++|+..+.+++.++|++... ..++.++..
T Consensus 179 n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~ 232 (315)
T d2h6fa1 179 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 99999999999887665 789999999999999999887 666666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=7.3e-22 Score=162.80 Aligned_cols=203 Identities=14% Similarity=0.050 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
.+..+....+.+..... .++..+.+++.+|.+|...|+| ++|+..|++++.++|+++.+|+.+|.+|...|++++
T Consensus 15 ~e~al~~~~e~l~~~~~----~~~~~a~~~~~~G~~y~~~g~~-~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 15 QEVILARMEQILASRAL----TDDERAQLLYERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHH
Confidence 33444444455554432 5667899999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc-----
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT----- 191 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~----- 191 (331)
|+.+|+++++++|++ .++.++|.++..+| ++++|+..++++++.+|++...+..++.++.......
T Consensus 90 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTYNYAHLNRGIALYYGG--------RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVL 161 (259)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hhhhhhHHHHHHhhhhhhHHHHHHHHHHHh--------hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999 89999999999887 4999999999999999998887776666555440000
Q ss_pred ---------------------C-CCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 192 ---------------------G-SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 192 ---------------------~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
+ ....+.++.+...+...+.. .|....+++++|.++..+|++++|+.+|++++..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 162 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 0 00011222222222222221 24555678899999999999999999999999999
Q ss_pred CCCcHH
Q 020060 250 PSLNAT 255 (331)
Q Consensus 250 ~~~~~~ 255 (331)
|++...
T Consensus 240 p~~~~~ 245 (259)
T d1xnfa_ 240 VHNFVE 245 (259)
T ss_dssp CTTCHH
T ss_pred CCCHHH
Confidence 987644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.2e-22 Score=168.15 Aligned_cols=223 Identities=10% Similarity=0.064 Sum_probs=182.8
Q ss_pred HHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccc-ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 43 DLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVP-EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 43 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
++|+..++.+.. ..|....+|+.+|.++...| ++ ++|+.++++++..+|++..+|..+|.++...|++++|+.+
T Consensus 60 ~~Al~~~~~ai~----lnP~~~~a~~~r~~~l~~l~~~~-~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 60 ERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDL-HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHH----HCCCChHHHHHHHHHHHHhCcCH-HHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence 555555555543 33567789999999999877 57 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 122 FNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 122 ~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
+.++++++|++ .+|.++|.++..+| ++++|+.+++++++++|.+..+|+++|.++... ......+.++
T Consensus 135 ~~kal~~dp~n~~a~~~~~~~~~~~~--------~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~---~~~~~~~~~~ 203 (315)
T d2h6fa1 135 IADILNQDAKNYHAWQHRQWVIQEFK--------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT---TGYNDRAVLE 203 (315)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHT--------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCSCSHHHHH
T ss_pred HhhhhhhhhcchHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc---cccchhhhhH
Confidence 99999999999 99999999999887 499999999999999999999999999998765 1112336789
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHH--HHHHHHHHhh
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT---EEVQMMVNLL--DKIENLLKGH 275 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~l~~~~~~l--~~~~~a~~~~ 275 (331)
+|+..+.++++.. |.+..+|+++|.++...| ..++...+.+++.+.|+.... ..++.++... +..+.+.+.+
T Consensus 204 ~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 280 (315)
T d2h6fa1 204 REVQYTLEMIKLV--PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 280 (315)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HhHHHHHHHHHhC--CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999965 999999999999876654 588999999999998876543 4555555433 3334455666
Q ss_pred hhhhhHHHH
Q 020060 276 AKTKRVASL 284 (331)
Q Consensus 276 ~~a~~l~~~ 284 (331)
.++..+...
T Consensus 281 ~ka~~l~~~ 289 (315)
T d2h6fa1 281 NKALELCEI 289 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 676665443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.7e-18 Score=142.35 Aligned_cols=187 Identities=11% Similarity=0.003 Sum_probs=149.3
Q ss_pred hcccccHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCc
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNP----SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGS 149 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~ 149 (331)
....++ +.|+..+.+++...+ ..+.+++.+|.+|...|++++|+.+|+++++++|++ .++..+|.++..+|
T Consensus 10 ~~~~~~-e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g--- 85 (259)
T d1xnfa_ 10 QPTLQQ-EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--- 85 (259)
T ss_dssp CCCHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT---
T ss_pred cccHHH-HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH---
Confidence 344564 778888888887533 456799999999999999999999999999999999 99999999999887
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHH
Q 020060 150 ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN 229 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 229 (331)
++++|+..|+++++++|+++.++.++|.++... |++++|+..|+++++.. |.+......++.++
T Consensus 86 -----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 86 -----NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG---------GRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAE 149 (259)
T ss_dssp -----CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred -----HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH---------hhHHHHHHHHHHHHhhc--cccHHHHHHHHHHH
Confidence 499999999999999999999999999999999 99999999999999955 98888887788777
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCC------------------------------------cHH-HHHHHHHHHHHHHHHHH
Q 020060 230 KYLENYERALSGFEASALKDPSL------------------------------------NAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 230 ~~~g~~~~A~~~~~~al~~~~~~------------------------------------~~~-~~l~~~~~~l~~~~~a~ 272 (331)
...+....+...........+.. ... ..+|.++..+|++++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 229 (259)
T d1xnfa_ 150 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 229 (259)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHH
Confidence 77766555544444443333221 122 34566666677777777
Q ss_pred HhhhhhhhH
Q 020060 273 KGHAKTKRV 281 (331)
Q Consensus 273 ~~~~~a~~l 281 (331)
+.|.+|...
T Consensus 230 ~~~~~al~~ 238 (259)
T d1xnfa_ 230 ALFKLAVAN 238 (259)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHc
Confidence 777666543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=6.6e-19 Score=150.59 Aligned_cols=210 Identities=10% Similarity=-0.036 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccc--ccHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHhCCh
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVP--EYRKDAEDHLSKAVKLNPSLADAW-LCLGSCIWKKGDL 115 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~ 115 (331)
...+++++..++.+.. ..+....+|+.+|.++...+ ++ ++|+..+.+++..+|....++ ..+|.++...+.+
T Consensus 86 ~~~~~~al~~~~~~l~----~~pk~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 86 AALVKAELGFLESCLR----VNPKSYGTWHHRCWLLSRLPEPNW-ARELELCARFLEADERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTCSSCCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHH----hCCCcHHHHHHhhHHHHHhccccH-HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc
Confidence 3456667777666543 33456678888888877765 46 899999999999999998886 5678999999999
Q ss_pred hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh----------------------HHHHHHHHHHHHHHHhcCCCC
Q 020060 116 PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN----------------------QAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~----------------------~~~~~~~A~~~~~~al~~~p~ 172 (331)
++|+.+++++++++|++ .+|..+|.++..+|..... ..+..+++...+.+++...|.
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~ 240 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcc
Confidence 99999999999999999 9999999999999865322 122345677778888888999
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+...+..+|.++... +++.+|+..+.+++..+ |.+..++..+|.++..+|++++|+.+|+++++++|..
T Consensus 241 ~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 241 PLFRCELSVEKSTVL---------QSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp CSSSCCCCHHHHHHH---------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred hhhHHHHHHHHHHHH---------hhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 999999999999988 99999999999999855 9999999999999999999999999999999999987
Q ss_pred cHH-HHHHHHHHH
Q 020060 253 NAT-EEVQMMVNL 264 (331)
Q Consensus 253 ~~~-~~l~~~~~~ 264 (331)
... ..++..+..
T Consensus 310 ~~y~~~L~~~~~~ 322 (334)
T d1dcea1 310 AAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 766 666655553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=9.2e-19 Score=149.68 Aligned_cols=203 Identities=10% Similarity=-0.037 Sum_probs=168.5
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--hhHHHHHHHHHHhcCCCh-HHH-hhHHHHHHHhc
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD--LPAAKNCFNLALSKGPNK-KIL-CQLSMLERSMA 146 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~-~~~-~~l~~~~~~~g 146 (331)
+..+...|++ .+|+.++++++..+|++..+|..+|.++...++ +++|+..+.++++.+|.+ .++ ...|.++...+
T Consensus 80 ~~~~~~~~~~-~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
T d1dcea1 80 KSPEESAALV-KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 158 (334)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHH-HHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc
Confidence 3344455666 899999999999999999999999999988765 899999999999999988 554 56778887776
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC---------------------ChhhHHHHHHH
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW---------------------DHSKLLQSLKA 205 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~---------------------~~~~~~~A~~~ 205 (331)
.+++|+..++++++.+|++..+|+++|.++..+.-..... ..+..+++...
T Consensus 159 --------~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~ 230 (334)
T d1dcea1 159 --------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (334)
T ss_dssp --------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred --------ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHH
Confidence 4999999999999999999999999999998761000000 00122345556
Q ss_pred HHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 206 YQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 206 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
|.+++... |.++..+..+|.++...|++.+|+..+.+++..+|++... ..+|.++..+|++++|++.+.++.+++|.
T Consensus 231 ~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 231 YHRWLLGR--AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHSC--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhC--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 66666644 7888888999999999999999999999999999999888 99999999999999999999999998774
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4e-17 Score=117.08 Aligned_cols=111 Identities=20% Similarity=0.087 Sum_probs=105.0
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
.-+...|..++..|+| ++|+.+|.++++.+|+++.+|..+|.+|...|++++|+..|.++++++|++ .+|+++|.++.
T Consensus 4 ~~l~~~g~~~~~~g~~-~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 4 NELKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 3456789999999998 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
.+| ++++|+..|+++++.+|+++.++..++.+.
T Consensus 83 ~~~--------~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 83 FLN--------RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HTT--------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred Hcc--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 997 499999999999999999999999988764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.5e-17 Score=122.11 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=116.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..+...|..++..|+| ++|+.+|+++++++|+++.+|.++|.++...|++++|+.+|+++++++|++ .++..+|.
T Consensus 8 ~~a~~l~~~gn~~~~~~~y-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~ 86 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence 4567788899999999998 999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
++..+| ++++|+.++++++.++|+++.++..++.+.... ..+.+++|+.....
T Consensus 87 ~~~~~g--------~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~-------~~~~~~~a~~~~~~ 139 (159)
T d1a17a_ 87 SNMALG--------KFRAALRDYETVVKVKPHDKDAKMKYQECNKIV-------KQKAFERAIAGDEH 139 (159)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHcC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------HHHHHHHHHhCcHH
Confidence 999997 499999999999999999999998888776543 11566777654433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.6e-17 Score=139.06 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=154.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
..+..|...|.+|...++| ++|+++|.+++.+. +..+.++.++|.+|...|++++|+.+|++++++.+..
T Consensus 35 ~Aa~~y~~aa~~y~~~~~~-~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~ 113 (290)
T d1qqea_ 35 EAADLCVQAATIYRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence 4466788899999999998 99999999999973 2346789999999999999999999999999886544
Q ss_pred ----HHHhhHHHHHHH-hccCchhHHHHHHHHHHHHHHHhcCCCC------CchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 133 ----KILCQLSMLERS-MAQGSENQAEIVEESIQHAKEAITLDVK------DGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 133 ----~~~~~l~~~~~~-~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
.++..+|.++.. +| ++++|+.++++++++.+. ...++..+|.++... |+|++
T Consensus 114 ~~~~~~~~~l~~~~~~~~~--------~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~---------g~y~~ 176 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLH--------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD---------GQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHH
T ss_pred hhHHHHHHHHHHhHhhHHH--------HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc---------ChHHH
Confidence 456667777643 45 599999999999886443 245688999999999 99999
Q ss_pred HHHHHHHHHhchhcCCCh-------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH------HHHHHHHHH--HH
Q 020060 202 SLKAYQNAEKDERMKSNP-------DLYFNCATVNKYLENYERALSGFEASALKDPSLNAT------EEVQMMVNL--LD 266 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~l~~~~~~--l~ 266 (331)
|+..|++++... +.++ ..+.+.|.++...|++..|...++++..++|..... ..+..++.. .+
T Consensus 177 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 177 ASDIYSKLIKSS--MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHTT--SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhC--ccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 999999999854 4443 346788999999999999999999999999876543 112222211 23
Q ss_pred HHHHHHHhhhhhhhHHHH
Q 020060 267 KIENLLKGHAKTKRVASL 284 (331)
Q Consensus 267 ~~~~a~~~~~~a~~l~~~ 284 (331)
++.++++.|.++.++++.
T Consensus 255 ~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 255 QLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp THHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHhhcCHH
Confidence 477888888777766553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.6e-16 Score=122.30 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=94.4
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
++..|..+...|+| ++|++.|.+ +.|.++.+|+++|.+|..+|++++|+.+|+++++++|++ .+++++|.++..+
T Consensus 8 l~~~g~~~~~~~d~-~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 8 LWNEGVLAADKKDW-KGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 34556666666666 666666654 244456666666666666666666666666666666666 6666666666666
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNS-WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
| ++++|+..|++++...+.+... +..+|. . .......++++
T Consensus 84 g--------~~~~A~~~~~kAl~~~~~n~~~~~~~~~~----------------------------~--~~~~~~e~~~n 125 (192)
T d1hh8a_ 84 E--------KYDLAIKDLKEALIQLRGNQLIDYKILGL----------------------------Q--FKLFACEVLYN 125 (192)
T ss_dssp T--------CHHHHHHHHHHHHHTTTTCSEEECGGGTB----------------------------C--CEEEHHHHHHH
T ss_pred c--------cHHHHHHHHHHHHHhCccCchHHHHHhhh----------------------------h--cccchHHHHHH
Confidence 5 3666666666666655544321 000000 0 01223467899
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+|.++..+|++++|...|.+++.+.|+.
T Consensus 126 ~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 126 IAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999984
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.6e-16 Score=120.40 Aligned_cols=155 Identities=12% Similarity=0.133 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
.++++.|++.+.. -.+..+.+|+++|.++..+|+| ++|+.+|+++++++|+++.+|+++|.+|..+|++++|
T Consensus 18 ~~d~~~Al~~~~~-------i~~~~~~~~~nlG~~~~~~g~~-~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 18 KKDWKGALDAFSA-------VQDPHSRICFNIGCMYTILKNM-TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp TTCHHHHHHHHHT-------SSSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 3567888888864 2334567899999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChH--HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 119 KNCFNLALSKGPNKK--ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 119 ~~~~~~al~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
+..|++++...+.+. .+..++.. .......+++++|.++..+
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~---------------------------~~~~~~e~~~n~a~~~~~~--------- 133 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQ---------------------------FKLFACEVLYNIAFMYAKK--------- 133 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBC---------------------------CEEEHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHhCccCchHHHHHhhhh---------------------------cccchHHHHHHHHHHHHHC---------
Confidence 999999998877662 12222211 1112245778999999999
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|++++|+..+.++++.. |.. ..+..+.|+..+.+.....|.
T Consensus 134 ~~~~~A~~~l~~A~~~~--~~~------------~~~~~~~Al~~~~~~~~~~~~ 174 (192)
T d1hh8a_ 134 EEWKKAEEQLALATSMK--SEP------------RHSKIDKAMECVWKQKLYEPV 174 (192)
T ss_dssp TCHHHHHHHHHHHHTTC--CSG------------GGGHHHHHHHHHHTTCCCCCC
T ss_pred CCHHHHHHHHHHHHhcC--CCc------------chHHHHHHHHHHHhhhhCCcc
Confidence 99999999999999854 543 234456777777666655554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.1e-16 Score=111.21 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
+++|+.+|.++++.+|+++.+|..+|.++..+ |++++|+..|.++++.. |.++.+|+++|.++..+|++
T Consensus 19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---------GDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCCcchhhhhccccccccc---------ccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCH
Confidence 55555555555555555555555555555555 55555555555555533 55555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCcHH-HHHHH
Q 020060 236 ERALSGFEASALKDPSLNAT-EEVQM 260 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~~-~~l~~ 260 (331)
++|+..|+++++++|+++.. ..++.
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55555555555555555544 44433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-15 Score=115.87 Aligned_cols=89 Identities=21% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
|++|+.+|+++++++|+++.+|.++|.++..+ |++++|+..|+++++.+ |.++.+|.++|.++..+|++
T Consensus 26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---------ECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhhccccchhhhhhhhhhHHHHHhc---------cccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCH
Confidence 55555555555555555555555555555555 55555555555555533 55555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCcHH
Q 020060 236 ERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~~ 255 (331)
++|+.+|++++.++|++...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~ 114 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDA 114 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH
Confidence 55555555555555555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=7.7e-16 Score=121.21 Aligned_cols=115 Identities=20% Similarity=0.122 Sum_probs=101.1
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
+..+...|..++..|+| ++|+.+|.+++.++|.++.+|.++|.+|...|++++|+.+|.++++++|++ .+|+++|.++
T Consensus 4 a~~l~~~Gn~~~~~g~~-~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34567889999999998 999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
..+| ++++|+..|+++++++|++...+...+..+...
T Consensus 83 ~~l~--------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 83 LEME--------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHTT--------CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHCC--------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 9887 499999999999999887766665555544444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=1.5e-15 Score=119.49 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
.+..+...|..++..|+|++|+.+|+++++++|.+ .+|.++|.++..+| ++++|+.+|+++++++|+++.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~--------~~~~Ai~~~~~al~l~p~~~~a 74 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELDGQSVKA 74 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTSCTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh--------hhhhhhHHHHHHHHhCCCcHHH
Confidence 46678899999999999999999999999999999 89999999999987 4999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 241 (331)
|+++|.+|..+ |++++|+..|++++... |.+...+...+..+...+....+...
T Consensus 75 ~~~lg~~~~~l---------~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~l~~~~~~~~~~~ 128 (201)
T d2c2la1 75 HFFLGQCQLEM---------ESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSI 128 (201)
T ss_dssp HHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---------CCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999 99999999999999855 77666666666666655555544333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.8e-15 Score=105.29 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE 233 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 233 (331)
+++++|.+.|++++.++|.++.+++++|.++... ...+++++|+..|++++..+..|..+.+++++|.+|..+|
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s------~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g 86 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT------RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999753 0227888999999999985412333568999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
++++|+.+|+++++++|++..+ ..++.+...+.
T Consensus 87 ~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 87 EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999987 55555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.7e-14 Score=121.38 Aligned_cols=217 Identities=12% Similarity=-0.002 Sum_probs=151.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.+.....++..+|.++...|++ ++|+..|++++.+.+. ...++..++.++...|++..|...+.+++.+.+..
T Consensus 46 ~~~~~~~a~~~lg~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 124 (366)
T d1hz4a_ 46 WFYSRIVATSVLGEVLHCKGEL-TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 3345567788899999999997 9999999999886432 24567788888888888888888888887653211
Q ss_pred ---------HHHhhHHHHHHHhccCchh-------------------------------HHHHHHHHHHHHHHHhcCCCC
Q 020060 133 ---------KILCQLSMLERSMAQGSEN-------------------------------QAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 133 ---------~~~~~l~~~~~~~g~~~~~-------------------------------~~~~~~~A~~~~~~al~~~p~ 172 (331)
..+..+|.++...|..... ..+.+.++...+.++....+.
T Consensus 125 ~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 204 (366)
T d1hz4a_ 125 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 204 (366)
T ss_dssp TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3445577777766541100 111233333333333332111
Q ss_pred -------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHH
Q 020060 173 -------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 173 -------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~ 241 (331)
...++..++.++... |++++|...+++++... +.+ ...+.++|.++...|++++|..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 273 (366)
T d1hz4a_ 205 GKYHSDWISNANKVRVIYWQMT---------GDKAAAANWLRHTAKPE--FANNHFLQGQWRNIARAQILLGEFEPAEIV 273 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHSCCCC--CTTCGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccCchHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122345566666666 89999999999998743 433 24477899999999999999999
Q ss_pred HHHHHhcC------CCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 020060 242 FEASALKD------PSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 242 ~~~al~~~------~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~ 287 (331)
+++++... |..... ..+|.++...|++++|++.+.+|.++.+....
T Consensus 274 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~ 326 (366)
T d1hz4a_ 274 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 326 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCc
Confidence 99998642 333334 88899999999999999999999988765433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=1.6e-14 Score=110.50 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
.+...|..++..|+|.+|+..|.++++..+.. .+...........|....++.++
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~nl 83 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-------------------------RAAAEDADGAKLQPVALSCVLNI 83 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------------HHHSCHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-------------------------hhhhhhHHHHHhChhhHHHHHHH
Confidence 35667888999999999999999988643322 11122223344566677888999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQ 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~ 259 (331)
|.++..+ |++++|+..|+++++.+ |.++.+|+++|.++..+|++++|+..|+++++++|++... ..+.
T Consensus 84 a~~~~~~---------~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 84 GACKLKM---------SDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhh---------cccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999 99999999999999965 9999999999999999999999999999999999999877 7777
Q ss_pred HHHHHHHHHHHHH
Q 020060 260 MMVNLLDKIENLL 272 (331)
Q Consensus 260 ~~~~~l~~~~~a~ 272 (331)
.+...+....+..
T Consensus 153 ~~~~~l~~~~~~~ 165 (169)
T d1ihga1 153 KVKQKIKAQKDKE 165 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.7e-14 Score=106.29 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
+..+...|..++..|+|++|+.+|++++...|.. .......... ..+. ..++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~ 65 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA------------------QALR---------LASH 65 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH------------------HHHH---------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhh------------------chhH---------HHHH
Confidence 4566788999999999999999999999888765 2111111111 0110 1256
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-H
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-E 256 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~ 256 (331)
.++|.+|... |++++|+..+++++..+ |.++.+++++|.++..+|++++|+.+|+++++++|+++.. .
T Consensus 66 ~nla~~y~k~---------~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~ 134 (170)
T d1p5qa1 66 LNLAMCHLKL---------QAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 134 (170)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHhh---------hhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7899999988 99999999999999955 9999999999999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHHHHHH
Q 020060 257 EVQMMVNLLDKIENLL 272 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~ 272 (331)
.++.+...++...+..
T Consensus 135 ~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 135 QLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7887777766665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.56 E-value=2e-14 Score=101.85 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=89.9
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
....++.+|..+...|++ ++|+.+|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++ .++..+|.+
T Consensus 15 ~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 15 YHENPMEEGLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 93 (112)
T ss_dssp GCSCHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhh-HHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence 344567899999999998 999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
+...| ++++|++++++.+
T Consensus 94 y~~~g--------~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEH--------NANAALASLRAWL 111 (112)
T ss_dssp HHHHH--------HHHHHHHHHHHHH
T ss_pred HHHCC--------CHHHHHHHHHHHh
Confidence 99776 6999999999875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.1e-14 Score=108.16 Aligned_cols=116 Identities=19% Similarity=0.102 Sum_probs=105.8
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---------------ADAWLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
.+..+...|..++..|+| ++|+.+|.+++...|.. ..++.++|.||...|++++|+.++++++.
T Consensus 12 ~a~~l~~~G~~~~~~~~~-~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKY-KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence 356677899999999998 99999999999987653 35678899999999999999999999999
Q ss_pred cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 128 KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 128 ~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
++|++ .+++.+|.++..+|. +++|+.+|+++++++|+++.+...++.+....
T Consensus 91 ~~p~~~~a~~~~g~~~~~~g~--------~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 91 LDSNNEKGLSRRGEAHLAVND--------FELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999 999999999999984 99999999999999999999999999988766
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.56 E-value=9.5e-15 Score=108.53 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=99.2
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----------CChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----------GDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+..+...+.| ++|+..|+++++++|+++.+++++|.++... +.+++|+..|+++++++|++ .+++++|
T Consensus 4 ~~~~~r~~~f-e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG 82 (145)
T d1zu2a1 4 ETEFDRILLF-EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 82 (145)
T ss_dssp CCSHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHccH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence 3445667788 9999999999999999999999999999854 45689999999999999999 9999999
Q ss_pred HHHHHhccCc---hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 140 MLERSMAQGS---ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 140 ~~~~~~g~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
.++..+|... ....+.+++|+++|+++++++|++..++..|+.+....
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 9999887421 22346799999999999999999999998888876544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.55 E-value=6e-14 Score=104.11 Aligned_cols=119 Identities=9% Similarity=0.081 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC-CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS-WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
+.+.|++|+..|+++++++|+++.+++++|.++.......+. -..+.+++|+..|+++++++ |+++.+|+++|.+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHHH
Confidence 345799999999999999999999999999999854100000 01156789999999999966 999999999999998
Q ss_pred Hhhc-----------HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 231 YLEN-----------YERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 231 ~~g~-----------~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
.+|+ +.+|..+|++++.++|++... ..++.+....+.+.++.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 799999999999999999876 77777766666665554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=2e-12 Score=108.43 Aligned_cols=183 Identities=9% Similarity=0.008 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHHHHHhccCchhHHHHHHH
Q 020060 82 KDAEDHLSKAVKL-NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSMLERSMAQGSENQAEIVEE 158 (331)
Q Consensus 82 ~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~ 158 (331)
++|...|++++.. .|.....|...+.+....|+++.|...|+++++..|.+ .+|..++......| +++.
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~--------~~~~ 152 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE--------GIKS 152 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH--------CHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC--------ChHH
Confidence 7899999999975 78889999999999999999999999999999999977 56788888888665 5999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHh-hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH
Q 020060 159 SIQHAKEAITLDVKDGNSWYNLGNACLT-SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER 237 (331)
Q Consensus 159 A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 237 (331)
|..+|.++++..|.+...|...+..... . |+.+.|...|++++... |.++..|...+..+...|++++
T Consensus 153 ar~i~~~al~~~~~~~~~~~~~a~~e~~~~---------~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~ 221 (308)
T d2onda1 153 GRMIFKKAREDARTRHHVYVTAALMEYYCS---------KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTS---------CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHH
Confidence 9999999999999999999988876443 3 78999999999999955 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcH----H-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 238 ALSGFEASALKDPSLNA----T-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 238 A~~~~~~al~~~~~~~~----~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|...|++++...|.++. . ..........|+...+.+.+.++.++.+
T Consensus 222 aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999998876543 2 4444555666777777777666655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.54 E-value=7.6e-14 Score=104.66 Aligned_cols=117 Identities=19% Similarity=0.128 Sum_probs=104.5
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----------------ADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
..+..+...|..++..|+| .+|+..|.+++...|.. ..++.++|.||..+|++++|+.++.++
T Consensus 15 ~~a~~~~~~G~~~f~~~~y-~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a 93 (153)
T d2fbna1 15 QSAFDIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 93 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence 4456677899999999998 99999999999876532 246788999999999999999999999
Q ss_pred HhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 126 LSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 126 l~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
++++|.+ .+++.+|.++..+| ++++|+.+|+++++++|+++.++..++.+...+
T Consensus 94 l~~~p~~~ka~~~~g~~~~~lg--------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 94 LKIDKNNVKALYKLGVANMYFG--------FLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHhHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999 99999999999997 499999999999999999999999988877654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.6e-16 Score=138.70 Aligned_cols=194 Identities=9% Similarity=0.010 Sum_probs=101.0
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHH-h
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KIL-C 136 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~-~ 136 (331)
++.+..++.+|.++...+++ ++| |++++..+|+.+.++...+.+. ...|..++..+++..+..... ... .
T Consensus 17 p~~a~a~~~la~~~~~~~~l-~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~ 90 (497)
T d1ya0a1 17 ADMTDSKLGPAEVWTSRQAL-QDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQAN 90 (497)
T ss_dssp GGGTCSSSCSSSSHHHHHHH-HHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHH
T ss_pred CCCHHHHhhHHHHHHHHchH-HHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCccHHHHHHH
Confidence 34455556666666666665 544 5666666665554433322221 112445556666555443222 111 1
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
.++.+.. ..+.|+.|+..+.+++.++|.+...+.++|.++... |++++|+..+.+++...
T Consensus 91 ~~~~l~~--------a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 91 LSLFLEA--------ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ---------THTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHHHHHH--------HHHHHHHHHHHHTC----------------------------------------CCHHHHHH---
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhC---------CCHHHHHHHHHHHhCCC---
Confidence 1222222 224678888888888888888888888888888777 88888888888777632
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
...++.++|.++...|++++|+.+|++|+.++|+++.. ..+|.++...|+..+|+..|.+|+.+
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 34567788888888888888888888888888888877 88888888888888888888777753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.5e-14 Score=102.64 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=97.5
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh---CChhHHHHHHHHHHhcCCCh---HHHhhHHHHH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK---GDLPAAKNCFNLALSKGPNK---KILCQLSMLE 142 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~ 142 (331)
.++..+...+++ ++|.+.|++++.++|.++.+++++|.++... +++++|+..|++++..+|.+ .+++++|.++
T Consensus 4 ~l~n~~~~~~~l-~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDL-LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 456677788997 9999999999999999999999999999864 45668999999999998876 5899999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
..+|+ +++|+.+|+++++++|++..+...++.+....
T Consensus 83 ~~~g~--------~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 83 YRLKE--------YEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhh--------hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 99984 99999999999999999999998888776544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.53 E-value=6.1e-14 Score=99.26 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
..++.+|.++...|++++|+.+|++++..+|++ .+|..+|.++..+| ++++|+.+++++++++|+++.+|.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~al~~~p~~~~a~~ 88 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--------KDGLAIIALNHARMLDPKDIAVHA 88 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhh--------hHHHhhcccccccccccccccchH
Confidence 346789999999999999999999999999999 99999999999887 499999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
.+|.+|... |++++|++++++.+
T Consensus 89 ~la~~y~~~---------g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 89 ALAVSHTNE---------HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHC---------CCHHHHHHHHHHHh
Confidence 999999999 99999999999876
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.52 E-value=9.6e-14 Score=105.99 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=103.1
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhc----------------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKL----------------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
..+...|..++..|+| .+|+..|.+++.. .|....++.++|.+|...|++++|+..|.+++++
T Consensus 28 ~~~~~~~~~~~~~~~y-~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNW-EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence 3456778899999998 9999999999864 3556778899999999999999999999999999
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+|++ .+|+.+|.++..+|+ +++|+..|+++++++|++..++..++.+....
T Consensus 107 ~p~~~~a~~~~g~~~~~l~~--------~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 107 DPSNTKALYRRAQGWQGLKE--------YDQALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhHHHHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999 999999999999974 99999999999999999999999999888766
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.9e-14 Score=104.58 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=89.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+..+..+|..++..|+| ++|+.+|.++++++|+++.++.++|.+|..+|+|++|+..++++++++|.+ ..+..+|.+
T Consensus 3 ~a~~~k~~G~~~~~~~~y-~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDF-DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 355677899999999998 999999999999999999999999999999999999999999999999877 444555555
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+..+|..... .+++++|+.+|++++..+|+
T Consensus 82 ~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 82 YARIGNSYFK-EEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHhcCCC
Confidence 5444432221 23599999999999987764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.8e-13 Score=99.30 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
..+..+|..++..|+|++|+.+|.++++++|++ .++.++|.++..+| ++++|+..++++++++|+++..|.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l~~~~~~~~~ 76 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCRELCEKAIEVGRENREDYR 76 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC--------chHHHHHHHHHHHHhCcccHHHHH
Confidence 345566666666666666666666666666666 56666666666555 366666666666666666655554
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+|.+| ..+|.++..++++++|+.+|++++..+++.
T Consensus 77 ~~a~~~--------------------------------------~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 77 QIAKAY--------------------------------------ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHH--------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHH--------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 444433 345566666677777777777777776653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1.1e-13 Score=115.27 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHH-h
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWK-K 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~-~ 112 (331)
..+.+|+.+..... +++..+.++..+|.+|...|++ ++|+.+|++++.+.+.. ..++..+|.+|.. .
T Consensus 58 ~~y~kA~~~~~~~~-----~~~~~a~~~~~~g~~y~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 131 (290)
T d1qqea_ 58 DSFLKAADYQKKAG-----NEDEAGNTYVEAYKCFKSGGNS-VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL 131 (290)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHH
Confidence 45555666655544 4566788999999999999997 99999999999986544 5688899998865 6
Q ss_pred CChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch-------hHH
Q 020060 113 GDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN-------SWY 178 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~ 178 (331)
|++++|+.+|++++++.+.. .++.++|.++..+| ++++|+..|++++...|..+. .+.
T Consensus 132 ~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g--------~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC--------hHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 99999999999999875332 56788999999887 499999999999998877653 456
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----HhhHHHHHHH--hhcHHHHHHHHHHHHhcCC
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----YFNCATVNKY--LENYERALSGFEASALKDP 250 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~~la~~~~~--~g~~~~A~~~~~~al~~~~ 250 (331)
..|.++... |+++.|...++++++.. |..+.. ...+..++.. .+.+.+|+..|.++.+++|
T Consensus 204 ~~~~~~l~~---------~d~~~A~~~~~~~~~~~--~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 204 KKGLCQLAA---------TDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHT---------TCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHh---------ccHHHHHHHHHHHHHhC--CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 788888888 99999999999999854 554432 3445445443 3569999999988777764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.51 E-value=3.7e-13 Score=102.54 Aligned_cols=116 Identities=18% Similarity=0.146 Sum_probs=104.7
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---------------LADAWLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
.+..+...|..++..|+| .+|+.+|.+++...|. ...++.++|.||...|++++|+.++++++.
T Consensus 14 ~a~~~~e~G~~~~~~~~~-~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKY-VQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 456778899999999998 9999999999986433 234678899999999999999999999999
Q ss_pred cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 128 KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 128 ~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
++|++ .+++.+|.++..+| ++++|+..|.+++.++|+++.++..++.+....
T Consensus 93 l~p~~~~a~~~~~~~~~~l~--------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 93 LDSANEKGLYRRGEAQLLMN--------EFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999 99999999999997 499999999999999999999999999988766
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.8e-15 Score=135.85 Aligned_cols=166 Identities=11% Similarity=-0.018 Sum_probs=111.0
Q ss_pred ccHHHHHHHHHHHHhcCC--CcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHH
Q 020060 79 EYRKDAEDHLSKAVKLNP--SLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 79 ~~~~~A~~~~~~al~~~p--~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
.| ..+++.+++..+... +.. .....++.++...+.|+.|+..+.+++.++|.+ ..+.++|.++...|
T Consensus 64 ~y-~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~-------- 134 (497)
T d1ya0a1 64 AF-KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQT-------- 134 (497)
T ss_dssp HT-HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HH-HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCC--------
Confidence 35 678888888886543 222 223345666777888999999999999998888 78888999888665
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
++++|+..+.+++..+| ..++.++|.++... |++++|+.+|.+++... |+++..|+++|.++...|+
T Consensus 135 ~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~---------~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~ 201 (497)
T d1ya0a1 135 HTSAIVKPQSSSCSYIC--QHCLVHLGDIARYR---------NQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGD 201 (497)
T ss_dssp --------CCHHHHHHH--HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCC
Confidence 58899999988887665 36788999999988 99999999999999955 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 235 YERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
+.+|+.+|.+++..+|.++.+ .+++.++....
T Consensus 202 ~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 202 HLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998888 88888776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=2.7e-13 Score=115.00 Aligned_cols=205 Identities=13% Similarity=-0.011 Sum_probs=157.8
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
+..+.+...+|.++...|++ ++|+.++++++...|.+ ..++..+|.+|...|++++|+..|++++++.+..
T Consensus 9 ~~~ae~~~lrA~~~~~~g~~-~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 87 (366)
T d1hz4a_ 9 TMHAEFNALRAQVAINDGNP-DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 87 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence 45567788899999999998 99999999999999876 4578899999999999999999999999875432
Q ss_pred ----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--------CchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 133 ----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--------DGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 133 ----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
..+..++.++...| ++..|...+.+++...+. ....+..+|.++... |+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~ 150 (366)
T d1hz4a_ 88 HYALWSLIQQSEILFAQG--------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW---------ARLD 150 (366)
T ss_dssp HHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT---------TCHH
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh---------cchh
Confidence 45667888888776 488999999888764322 224566788888877 7888
Q ss_pred HHHHHHHHHHhchhc--------------------------------------------CCChhHHhhHHHHHHHhhcHH
Q 020060 201 QSLKAYQNAEKDERM--------------------------------------------KSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 201 ~A~~~~~~al~~~~~--------------------------------------------~~~~~~~~~la~~~~~~g~~~ 236 (331)
.|...+.+++..... +....++..+|.++...|+++
T Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T d1hz4a_ 151 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 230 (366)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHH
Confidence 888777776652100 001123566777788888999
Q ss_pred HHHHHHHHHHhcCCCCcH----H-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 237 RALSGFEASALKDPSLNA----T-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~~~----~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+|..++++++...|.+.. . ..++.++...|++++|...+.++..+..
T Consensus 231 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 282 (366)
T d1hz4a_ 231 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 282 (366)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999998888776543 2 5678889999999999988888875543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.49 E-value=2.9e-13 Score=101.41 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+..+...|..++..|+|.+|+..|.+++...+............ ....+ ...++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-------------~~~~~------------~~~~~~ 71 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-------------KKKNI------------EISCNL 71 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-------------HHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-------------hhhhH------------HHHHHh
Confidence 44567789999999999999999999998876552111100000 00111 113678
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
++|.+|..+ |++++|+..+++++..+ |.+..+|+++|.++..+|++++|+.+|+++++++|++... ..
T Consensus 72 Nla~~~~~l---------~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~ 140 (153)
T d2fbna1 72 NLATCYNKN---------KDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHh---------cccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 899999999 99999999999999955 9999999999999999999999999999999999999987 77
Q ss_pred HHHHHHHHHHH
Q 020060 258 VQMMVNLLDKI 268 (331)
Q Consensus 258 l~~~~~~l~~~ 268 (331)
+..+...+++.
T Consensus 141 l~~~~~kl~~~ 151 (153)
T d2fbna1 141 YELCVNKLKEA 151 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.49 E-value=6e-13 Score=101.32 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+..+...|..++..|+|.+|+.+|.+++...+....... ........+ ...++.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~-----------------~~~~~~~~~---------~~~~~~ 68 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE-----------------KESKASESF---------LLAAFL 68 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-----------------HHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch-----------------hhhhhcchh---------HHHHHH
Confidence 566788999999999999999999999987654310000 001111111 123567
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
++|.+|..+ |++++|+..++++++.+ |.+..+++++|.++..+|++++|+..|.+++.++|++... ..
T Consensus 69 Nla~~~~~l---------~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~ 137 (168)
T d1kt1a1 69 NLAMCYLKL---------REYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 137 (168)
T ss_dssp HHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred hHHHHHHHh---------hhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888998888 89999999999999855 9999999999999999999999999999999999988887 77
Q ss_pred HHHHHHHHHHHHHHH
Q 020060 258 VQMMVNLLDKIENLL 272 (331)
Q Consensus 258 l~~~~~~l~~~~~a~ 272 (331)
++.+...++...+..
T Consensus 138 l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 138 IFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 777777776665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=1.1e-12 Score=110.02 Aligned_cols=193 Identities=5% Similarity=-0.036 Sum_probs=160.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A 118 (331)
...+++..+++..... .++....+|...+......|++ +.|...|.+++...|.+. .+|...+......|+++.|
T Consensus 78 ~~~~~a~~i~~ral~~---~~p~~~~l~~~ya~~~~~~~~~-~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 78 LFSDEAANIYERAIST---LLKKNMLLYFAYADYEESRMKY-EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHTT---TTTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred cchHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHH
Confidence 3445666666554321 2345567888899999999997 999999999999999764 5799999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
...|.++++..|.. ..+...+....... ++.+.|..+|++++..+|.++..|...+..+... |
T Consensus 154 r~i~~~al~~~~~~~~~~~~~a~~e~~~~-------~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~---------g 217 (308)
T d2onda1 154 RMIFKKAREDARTRHHVYVTAALMEYYCS-------KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL---------N 217 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHTS-------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhc-------cCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc---------C
Confidence 99999999999988 77777776654432 2489999999999999999999999999999988 9
Q ss_pred hHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+++.|...|+++++.. |.++ .+|..........|+.+.+...++++.+..|+...
T Consensus 218 ~~~~aR~~fe~ai~~~--~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 218 EDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CHHHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred ChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 9999999999999854 5544 36777788778889999999999999999987653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.29 E-value=8.1e-11 Score=96.06 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=142.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHHhhHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKILCQLS 139 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~l~ 139 (331)
+..++.+|..+...+++ ++|+.+|+++.+. +++.+++.||.+|.. ..++..|..++..+...... .+...+|
T Consensus 2 p~~~~~lG~~~~~~~d~-~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDF-TQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-NGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-chhhccc
Confidence 45788999999999998 9999999999775 578899999999987 67889999999988765522 4555566
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCC----------------------------------CCCchhHHHHHHHHH
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLD----------------------------------VKDGNSWYNLGNACL 185 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~l~~~~~ 185 (331)
.++....... .+.+.|...++++.... +.+...+..||.++.
T Consensus 78 ~~~~~~~~~~----~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 78 NLYYSGQGVS----QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHTSSSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccc----hhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhc
Confidence 6554321110 12444444444444322 234456667777766
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQM 260 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~ 260 (331)
.. .....+...+..+++.+.+ +.++.+++++|.++.. ..++++|+.+|+++.+.. ++.+ ..+|.
T Consensus 154 ~~-----~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~ 222 (265)
T d1ouva_ 154 AG-----RGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGA 222 (265)
T ss_dssp HT-----SSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred cC-----CCcccccccchhhhhcccc----ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHH
Confidence 42 1123567778888888875 7789999999999987 678999999999998874 4556 88888
Q ss_pred HHHH----HHHHHHHHHhhhhhhhH
Q 020060 261 MVNL----LDKIENLLKGHAKTKRV 281 (331)
Q Consensus 261 ~~~~----l~~~~~a~~~~~~a~~l 281 (331)
++.. ..+..+|++.|.+|...
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHC
Confidence 8764 23677788888888765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.3e-11 Score=84.03 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=72.1
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS-------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
+.-++.+|.+++..|+| .+|+.+|++|+++.|. .+.++.++|.++...|++++|+.+|+++++++|++ .++
T Consensus 5 addc~~lG~~~~~~g~y-~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 45578999999999999 9999999999988543 37899999999999999999999999999999999 888
Q ss_pred hhHHHHHHHh
Q 020060 136 CQLSMLERSM 145 (331)
Q Consensus 136 ~~l~~~~~~~ 145 (331)
.+++.+...+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888766544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.9e-11 Score=81.16 Aligned_cols=82 Identities=10% Similarity=0.079 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC-------hhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN-------PDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
++-++.+|.++... |+|.+|+.+|+++++.. |.+ ..++.++|.++..+|++++|+.+|++++
T Consensus 5 addc~~lG~~~~~~---------g~y~~A~~~~~~Al~~~--~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 5 AEDSFELGKVAYTE---------ADYYHTELWMEQALRQL--DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH--hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence 45678999999999 99999999999999843 332 4679999999999999999999999999
Q ss_pred hcCCCCcHH-HHHHHHHHHHH
Q 020060 247 LKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 247 ~~~~~~~~~-~~l~~~~~~l~ 266 (331)
+++|+++.+ .+++.+...++
T Consensus 74 ~l~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 74 ELDPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHhC
Confidence 999999987 77776655543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.17 E-value=3.6e-11 Score=90.05 Aligned_cols=99 Identities=10% Similarity=-0.027 Sum_probs=80.4
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc------------hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG------------NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
|..++..| +|++|+..|++++++.|+.+ .+|.++|.+|..+ |++++|+..+
T Consensus 16 g~~~~~~g--------~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l---------g~~~~A~~~~ 78 (156)
T d2hr2a1 16 AQRQLVAG--------EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL---------RSFDEALHSA 78 (156)
T ss_dssp HHHHHHHT--------CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHH
T ss_pred HHHHHHcC--------CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc---------CccchhhHhh
Confidence 55555554 59999999999999887654 4688999999999 9999999999
Q ss_pred HHHHhchh-----cC----CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 207 QNAEKDER-----MK----SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 207 ~~al~~~~-----~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
++++.... .+ ....+++++|.+|..+|++++|+.+|++++++.|....
T Consensus 79 ~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 79 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred hhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 99997431 01 12345899999999999999999999999998775443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.13 E-value=1.2e-10 Score=87.06 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=76.4
Q ss_pred HHHHHH--HHHHHHhCChhHHHHHHHHHHhcCCCh-------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 100 DAWLCL--GSCIWKKGDLPAAKNCFNLALSKGPNK-------------KILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 100 ~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
.++..+ |..++..|+|++|+..|++++++.|+. .++.++|.++..+|. +++|+..++
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--------~~~A~~~~~ 79 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSAD 79 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--------cchhhHhhh
Confidence 344444 777778888888888888888776542 367789999998874 888998888
Q ss_pred HHhcCCCC-----------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 165 EAITLDVK-----------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 165 ~al~~~p~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+++.+.|. ...+++++|.+|..+ |++++|+..|++++.+.
T Consensus 80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~l---------g~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGL---------GRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhHHHHhhhHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence 88876442 233678999999999 99999999999999854
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.04 E-value=2.7e-10 Score=92.51 Aligned_cols=132 Identities=17% Similarity=0.018 Sum_probs=104.6
Q ss_pred hhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCch
Q 020060 72 KILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSE 150 (331)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~ 150 (331)
...+..|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+. ..+..++.++...+
T Consensus 4 ~~aL~~G~l-~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~---- 78 (264)
T d1zbpa1 4 KNALSEGQL-QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ---- 78 (264)
T ss_dssp HHHTTTTCH-HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----
T ss_pred HHHHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc----
Confidence 455678997 999999999999999999999999999999999999999999999999998 77777887776443
Q ss_pred hHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHh
Q 020060 151 NQAEIVEESIQHAKEAIT-LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYF 223 (331)
Q Consensus 151 ~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (331)
..+++......... ..|.....+...+.++... |++++|...+.++.... |..+..+.
T Consensus 79 ----~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~---------gd~~~A~~~~~~a~e~~--p~~~~~~~ 137 (264)
T d1zbpa1 79 ----ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS---------QDYEQVSELALQIEELR--QEKGFLAN 137 (264)
T ss_dssp ----HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--CCCCEEET
T ss_pred ----ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHhcC--CCCCcccc
Confidence 34444443333222 2344455666778888877 99999999999999854 77766544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.03 E-value=3.2e-10 Score=92.05 Aligned_cols=130 Identities=10% Similarity=-0.047 Sum_probs=107.4
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
.-.+..|++++|+..|+++++.+|++ ..+..++.++...| ++++|+..++++++++|++...+..++.++.
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G--------~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG--------DFERADEQLMQSIKLFPEYLPGASQLRHLVK 75 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34567899999999999999999999 89999999999887 4999999999999999999999999999888
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.. +..+++...+.+.... ..|.....+...+.++...|++++|...+.++.+..|..+.
T Consensus 76 a~---------~~~~~a~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 76 AA---------QARKDFAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HH---------HHHHHHTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred hc---------cccHHHHHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 77 7776665554443321 12444455778889999999999999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.91 E-value=7.9e-09 Score=83.90 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=131.3
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----h
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----K 112 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~ 112 (331)
++++|++.+++... ...+.+++.+|.+|.. ..++ ..|..++..+... .++.+...+|.++.. .
T Consensus 17 d~~~A~~~~~kAa~------~g~~~A~~~Lg~~y~~G~~~~~d~-~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~ 87 (265)
T d1ouva_ 17 DFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNL-KKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVS 87 (265)
T ss_dssp CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcchhH-HHHHHhhcccccc--cccchhhccccccccccccc
Confidence 44666666665432 1345678889998886 5676 8899999887765 467778888887765 4
Q ss_pred CChhHHHHHHHHHHhcCCCh-----------------------------------HHHhhHHHHHHHhccCchhHHHHHH
Q 020060 113 GDLPAAKNCFNLALSKGPNK-----------------------------------KILCQLSMLERSMAQGSENQAEIVE 157 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~-----------------------------------~~~~~l~~~~~~~g~~~~~~~~~~~ 157 (331)
.+.+.|...++++....+.. ..+..+|.++..... ...+..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~----~~~~~~ 163 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG----TPKDLK 163 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS----SCCCHH
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC----cccccc
Confidence 67788888888887654432 122233333332110 112345
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hh
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LE 233 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g 233 (331)
.+...++.+.+ +.++.+++++|.+|... .....++++|+.+|+++.+ .+++.+++++|.+|.. ..
T Consensus 164 ~~~~~~~~a~~--~g~~~A~~~lg~~y~~g-----~~~~~d~~~A~~~~~~aa~----~g~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 164 KALASYDKACD--LKDSPGCFNAGNMYHHG-----EGATKNFKEALARYSKACE----LENGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHT-----CSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSSC
T ss_pred cchhhhhcccc--ccccccccchhhhcccC-----cccccchhhhhhhHhhhhc----ccCHHHHHHHHHHHHcCCCCcc
Confidence 66666676664 45788999999998863 1122689999999999987 5689999999999986 44
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q 020060 234 NYERALSGFEASALKDPSL 252 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~ 252 (331)
++.+|..+|++|....+..
T Consensus 233 n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp CSTTHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHCcCHH
Confidence 8999999999998877653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.87 E-value=6.7e-09 Score=79.00 Aligned_cols=117 Identities=10% Similarity=-0.044 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
.+.+...|......|++++|+..|.+++.+.+.. ......+... ..++ ..+.+....++
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~-------------~~~r-------~~l~~~~~~a~ 70 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV-------------EPFA-------TALVEDKVLAH 70 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTH-------------HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHH-------------HHHH-------HHHHHHHHHHH
Confidence 4566777777788888888888888888777655 1111111000 0011 11122334567
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
..++.++... |++++|+..+++++..+ |.+..+|..++.++..+|++.+|+..|+++.
T Consensus 71 ~~la~~~~~~---------g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 71 TAKAEAEIAC---------GRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---------CCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7888888888 88888888888888854 8888888888888888888888888888873
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.79 E-value=4.4e-08 Score=74.32 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=86.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----------------------HHHHHHHHHHHHHhCChhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----------------------ADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~ 119 (331)
.....+...|......|++ ++|+..|.+++.+.++. ..++..++.++...|++++|+
T Consensus 9 ~~f~~~~~~g~~~~~~g~~-e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRF-EQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 5567788899999999997 99999999999987643 257889999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
.+++++++.+|.+ .+|..++.++..+|. +.+|+..|+++.
T Consensus 88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr--------~~eAl~~y~~~~ 128 (179)
T d2ff4a2 88 AELEALTFEHPYREPLWTQLITAYYLSDR--------QSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHH
Confidence 9999999999999 899999999999984 889999988873
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=5.8e-07 Score=62.30 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh-hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP-DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
..+.++.|+++... ....+..+|+..++.+++.+ |.+. +.++++|..|+++|+|++|..+++++++++|++
T Consensus 35 ~qt~F~YAw~Lv~S------~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKS------TDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHS------SCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHcC------CcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 67889999998854 13378899999999999844 7664 789999999999999999999999999999999
Q ss_pred cHHH
Q 020060 253 NATE 256 (331)
Q Consensus 253 ~~~~ 256 (331)
..+.
T Consensus 107 ~qA~ 110 (124)
T d2pqrb1 107 KQVG 110 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=4.1e-07 Score=65.30 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 114 DLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
|+++|+.+|+++.+.... .+.+.++.... .+.++|+..++++.+. .++.+.+.||.+|..- .
T Consensus 8 d~~~A~~~~~kaa~~g~~-~a~~~l~~~~~----------~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g-----~ 69 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-FGCLSLVSNSQ----------INKQKLFQYLSKACEL--NSGNGCRFLGDFYENG-----K 69 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-THHHHHHTCTT----------SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC-----S
T ss_pred CHHHHHHHHHHHHHCCCh-hhhhhhccccc----------cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhc-----c
Confidence 566677777776655422 33333332111 2478899999998875 5788899999988752 1
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCC
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDP 250 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 250 (331)
....++++|+.+|+++.+ ..++.+.+++|.+|.. ..++.+|..+|+++.+...
T Consensus 70 ~~~~d~~~A~~~~~~aa~----~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 70 YVKKDLRKAAQYYSKACG----LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHhhhhc----cCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 123678999999999986 6788999999999887 4689999999999887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.5e-06 Score=60.12 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=62.4
Q ss_pred hHHHHHhhhhhhcc---cccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 64 ATYEYLKGKILDVV---PEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 64 ~~~~~~~g~~~~~~---~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
....+..|.++... .+. ++|+.+++++++.+|... ++++.+|..|+..|+|++|..++++++++.|++ .+....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~-~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDE-RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHH-HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 44555666666543 454 789999999999998764 899999999999999999999999999999999 555444
Q ss_pred HHHH
Q 020060 139 SMLE 142 (331)
Q Consensus 139 ~~~~ 142 (331)
..+.
T Consensus 114 ~~Ie 117 (124)
T d2pqrb1 114 SMVE 117 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=3.4e-06 Score=60.30 Aligned_cols=110 Identities=9% Similarity=-0.012 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH-
Q 020060 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY- 231 (331)
Q Consensus 153 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~- 231 (331)
.+++++|+.+|+++.+.. ++.+++.|+.. ...++++|+.+|+++.+ .+++.+.+.+|.+|..
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~-----------~~~~~~~a~~~~~~aa~----~g~~~a~~~Lg~~y~~g 68 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVSN-----------SQINKQKLFQYLSKACE----LNSGNGCRFLGDFYENG 68 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHTC-----------TTSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhccc-----------cccCHHHHHHHHhhhhc----ccchhhhhhHHHhhhhc
Confidence 467999999999998864 56677777642 22788999999999987 7899999999999986
Q ss_pred ---hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhhH
Q 020060 232 ---LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKRV 281 (331)
Q Consensus 232 ---~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~l 281 (331)
..++.+|+.+|+++.+. .++.+ ..++.++.. ..+..+|++.|.+|.++
T Consensus 69 ~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 69 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 56799999999999875 45565 888887755 34577777777777653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=1.4 Score=36.73 Aligned_cols=97 Identities=4% Similarity=-0.157 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA-T-EEVQMMVNLLDKIENLLKG 274 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~ 274 (331)
+..+.+......... ...+......++......+++..+...+...- ..+.... . .++|..+..+|+...|...
T Consensus 266 ~~~~~a~~~~~~~~~---~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~-~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 266 DVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLP-MEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-TTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CchHHHHHHHHhhcc---cccchHHHHHHHHHHHHcCChHHHHHHHHhcC-cccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 445566666655543 13333332223334556688888888876542 2333323 3 9999999999999999988
Q ss_pred hhhhhhHHHHHhhccccccCCCc
Q 020060 275 HAKTKRVASLASSLAVVKLSSSH 297 (331)
Q Consensus 275 ~~~a~~l~~~~~~~~~~~~~~~~ 297 (331)
|..+..-....+.+....+...+
T Consensus 342 ~~~~a~~~~fYG~LAa~~Lg~~~ 364 (450)
T d1qsaa1 342 LHQLMQQRGFYPMVAAQRIGEEY 364 (450)
T ss_dssp HHHHHTSCSHHHHHHHHHTTCCC
T ss_pred HHHHhcCCChHHHHHHHHcCCCC
Confidence 88877644555555555554443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=1.5 Score=36.58 Aligned_cols=187 Identities=7% Similarity=-0.103 Sum_probs=112.0
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQL 138 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l 138 (331)
.........++..+...+.. +.+...+........+.......++. ....+++..+...+.... ..+.. ...+-+
T Consensus 249 ~~~~~~~~~~a~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~-~~~~~~~r~~YW~ 325 (450)
T d1qsaa1 249 DQIQELRDIVAWRLMGNDVT-DEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLP-MEAKEKDEWRYWQ 325 (450)
T ss_dssp HHHHHHHHHHHHTSCSTTCC-HHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSC-TTGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCch-HHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcC-cccccHHHHHHHH
Confidence 33444444455555566665 77888777776665555444444444 456789999888887542 23333 566779
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
|..+..+|+ .++|...|..+... + ..|..|+.-.+...+... .. .+. ..+..
T Consensus 326 gRa~~~~G~--------~~~A~~~~~~~a~~-~---~fYG~LAa~~Lg~~~~~~---~~-----------~~~--~~~~~ 377 (450)
T d1qsaa1 326 ADLLLERGR--------EAEAKEILHQLMQQ-R---GFYPMVAAQRIGEEYELK---ID-----------KAP--QNVDS 377 (450)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHHHTS-C---SHHHHHHHHHTTCCCCCC---CC-----------CCC--SCCCC
T ss_pred HHHHHHcCC--------hhhHHHHHHHHhcC-C---ChHHHHHHHHcCCCCCCC---cC-----------CCC--ccHHH
Confidence 999998874 88899999988752 2 255555544442211000 00 000 00111
Q ss_pred h---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 219 P---DLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 219 ~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
. ..-...+..+...|+...|...+..++... +......++.+....|.++.++....++.
T Consensus 378 ~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0 112455677788899999988888776532 22223777888888888888886655554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.73 E-value=9.7 Score=30.12 Aligned_cols=146 Identities=17% Similarity=0.141 Sum_probs=83.1
Q ss_pred hhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchh
Q 020060 72 KILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSEN 151 (331)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~ 151 (331)
.++...++| +.|.+.+.++ +....|..+........+..-|.-+ . +...........+...+...|
T Consensus 48 ~~~v~l~~~-~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~--~~~~~~~d~l~~~v~~ye~~~----- 113 (336)
T d1b89a_ 48 STLVHLGEY-QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-G--LHIVVHADELEELINYYQDRG----- 113 (336)
T ss_dssp HHHHTTTCH-HHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-T--TTTTTCHHHHHHHHHHHHHTT-----
T ss_pred HHHHhhccH-HHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-H--HHhhcCHHHHHHHHHHHHHcC-----
Confidence 344556665 6666666554 4566777777776666555433111 1 111111122223444444443
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH-Hhch-----hcCCChhHHhhH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA-EKDE-----RMKSNPDLYFNC 225 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~-----~~~~~~~~~~~l 225 (331)
.+++.+.+++.++...+.+...+..++.+|... +.++-++.+... ...+ ........|-.+
T Consensus 114 ---~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~----------~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~el 180 (336)
T d1b89a_ 114 ---YFEELITMLEAALGLERAHMGMFTELAILYSKF----------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 180 (336)
T ss_dssp ---CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT----------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred ---ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh----------ChHHHHHHHHhccccCCHHHHHHHHHHcCChHHH
Confidence 588999999999988888888888898888765 233444444332 1100 001122335677
Q ss_pred HHHHHHhhcHHHHHHHHHH
Q 020060 226 ATVNKYLENYERALSGFEA 244 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~ 244 (331)
..+|.+.|++++|+..+-.
T Consensus 181 v~Ly~~~~~~~~A~~~~i~ 199 (336)
T d1b89a_ 181 VFLYDKYEEYDNAIITMMN 199 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 7888889999988765433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.84 E-value=7.1 Score=30.94 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=84.2
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccC
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~ 148 (331)
..|..+...|.| +.|..+|.. .+ -+..+..++...+++..|..++.++ .....|..+...+.....
T Consensus 19 ~i~~~c~~~~ly-e~A~~lY~~----~~----d~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~~e- 84 (336)
T d1b89a_ 19 QVGDRCYDEKMY-DAAKLLYNN----VS----NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKE- 84 (336)
T ss_dssp ----------CT-TTHHHHHHH----TT----CHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHCCCH-HHHHHHHHh----CC----CHHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhCcH-
Confidence 578888899998 889988864 22 2445667888999999999988876 122677777776665432
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 149 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
..-+ ......+ ..++.-...+...|... |.+++.+.+++.++... +.+...+..++.+
T Consensus 85 -------~~la-~i~~~~~---~~~~d~l~~~v~~ye~~---------~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~l 142 (336)
T d1b89a_ 85 -------FRLA-QMCGLHI---VVHADELEELINYYQDR---------GYFEELITMLEAALGLE--RAHMGMFTELAIL 142 (336)
T ss_dssp -------HHHH-HHTTTTT---TTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTTST--TCCHHHHHHHHHH
T ss_pred -------HHHH-HHHHHHh---hcCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHcCC--ccchHHHHHHHHH
Confidence 2211 1111111 12344444566666666 99999999999998744 7788888999998
Q ss_pred HHHhhcHHHHHHHHHH
Q 020060 229 NKYLENYERALSGFEA 244 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~ 244 (331)
|.+.+ .++-..+++.
T Consensus 143 yak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 143 YSKFK-PQKMREHLEL 157 (336)
T ss_dssp HHTTC-HHHHHHHHHH
T ss_pred HHHhC-hHHHHHHHHh
Confidence 87654 4454555444
|