Citrus Sinensis ID: 020080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVSL
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEHcEEccEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHcccccccHEEEEccccccccccccccHHccccccccccccccHHcccccccEEEEccccccccHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccEEHEcccccccccccccHHHHHHccccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
margewgyqglwrgkwccsykkttLIICFINIVIALYVLRSIYASIYVFSrndlkvvkytpdqIRNMEEsvrirsdnepMALVKLVNGLkqefsrdesvfELPRAVKLRMIDEILRRLqssdvkgnvSAQREAVESWRREKLEEAKQlsigrqginSTILQEEARMLVRVLESDWAALSEEIglwipteiihkehgdkpkgvededldedvlpgrppppechaelhtdydGVAIRWglthhrdsAADCCQACIEQAkrakpgqmkcniwvycpaetgchspdkyeHKYQECWLKYaekpklnfkdrysekyrnahpaaplvvpwvsgvvsl
Flexible Loop (DISEMBL)
margewgyqglwrgKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFsrndlkvvkytpdqirnmeesvrirsdnepMALVKLVNGlkqefsrdesvfelpraVKLRMIDEILRrlqssdvkgnvsAQREAVESWRREKLeeakqlsigrqginstiLQEEARMLVRVLESDWAALSEEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAkrakpgqmkCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRnahpaaplvvpwvsgvvsl
Low Complexity Region (SEG)
MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIHKEHGDKPKGvededldedvlPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVSL
Disordered region (IsUnstruct)
****EWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQI***************MALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRR**********************************RQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIH******************************AELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGV***
Disordered Region (DISOPRED)
***********WRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIY**************DQIRNMEESVRIRSDNEPMALVKLVNGLK******************RMIDEILRRL***************************************************VLESDWAALSEEIGLWIPTEI**************************PPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKP*****************AAPLVVPWVSGVVSL
Disordered Region (DISEMBL)
MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSS**************SWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVSL
Disordered Region (DISPRO)
****EWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIHKEH*********EDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVSL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
225458579	321	PREDICTED: uncharacterized protein LOC10	0.963	0.993	0.679	1e-128
255538360	321	conserved hypothetical protein [Ricinus	0.954	0.984	0.693	1e-127
224137454	321	predicted protein [Populus trichocarpa]	0.948	0.978	0.684	1e-126
449470184	327	PREDICTED: uncharacterized protein LOC10	0.981	0.993	0.652	1e-125
224063535	321	predicted protein [Populus trichocarpa]	0.948	0.978	0.678	1e-125
357437891	339	hypothetical protein MTR_1g019780 [Medic	0.984	0.961	0.621	1e-117
356510377	320	PREDICTED: uncharacterized protein LOC10	0.951	0.984	0.612	1e-115
356519192	320	PREDICTED: uncharacterized protein LOC10	0.951	0.984	0.628	1e-113
356552196	330	PREDICTED: uncharacterized protein LOC10	0.945	0.948	0.629	1e-113
356564196	336	PREDICTED: uncharacterized protein LOC10	0.987	0.973	0.597	1e-112

>gi|225458579|ref|XP_002284610.1| PREDICTED: uncharacterized protein LOC100248838 [Vitis vinifera] gi|302142335|emb|CBI19538.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/331 (67%), Positives = 267/331 (80%), Gaps = 12/331 (3%)

Query: 1   MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLK-VVKY 59
           MAR EWG+QG  RGKWC SYK+TTLIIC INI +ALYVL S+Y SIY+ S  D +  VKY
Sbjct: 1   MARIEWGFQG--RGKWC-SYKRTTLIICSINIAVALYVLHSLYNSIYISSNIDSQSAVKY 57

Query: 60  TPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQ 119
           TPDQIR MEES+RIR  +EP+ LVKLV  +++E SR+ S  ELP+ +K ++ DEIL+RL+
Sbjct: 58  TPDQIRKMEESIRIRRASEPVELVKLVKEVEKELSREASEVELPQPIKQKITDEILQRLK 117

Query: 120 SSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALS 179
           S D   NVS QREAVESWR+EK+EE K+       +NSTI  EEA MLVR LES+WA L 
Sbjct: 118 SLDHNSNVSVQREAVESWRKEKIEEVKK------SMNSTISPEEAGMLVRALESNWAVLF 171

Query: 180 EEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLT 239
           EEIGLW+PTE+I+KEH DKP+G  +E+ D+ ++PGRP PPECHAE+HTDYDG A+RWGLT
Sbjct: 172 EEIGLWMPTEVIYKEHDDKPEG--EEEFDDGIIPGRPVPPECHAEIHTDYDGAAVRWGLT 229

Query: 240 HHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKP 299
           HH+DSAADCCQAC +QA  AKPG+ KCNIWVYCP+ETGC SPD YEHK  ECWLKYAEKP
Sbjct: 230 HHKDSAADCCQACFDQANHAKPGEKKCNIWVYCPSETGCFSPDIYEHKNGECWLKYAEKP 289

Query: 300 KLNFKDRYSEKYRNAHPAAPLVVPWVSGVVS 330
           +LNFKD+YSE YRNAHP+APL VPWVSGV S
Sbjct: 290 RLNFKDKYSESYRNAHPSAPLFVPWVSGVAS 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538360|ref|XP_002510245.1| conserved hypothetical protein [Ricinus communis] gi|223550946|gb|EEF52432.1| conserved hypothetical protein [Ricinus communis]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/320 (69%), Positives = 266/320 (83%), Gaps = 4/320 (1%)

Query: 13  RG-KWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLK-VVKYTPDQIRNMEES 70
           RG KW CSYK+TTL++C INIV+ALYVLRS+YAS+Y++S ++   V KYT DQI  MEES
Sbjct: 3   RGVKWGCSYKRTTLMVCSINIVVALYVLRSLYASLYIYSNHEFNNVAKYTLDQISKMEES 62

Query: 71  VRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQ 130
           +RIR   EP+ LV+LV  LK+E  RDE V ELP  VK R+ DE+L RL+S D   N+  Q
Sbjct: 63  IRIRKTKEPLQLVQLVKELKEELKRDEKVVELPVDVKQRITDELLLRLRSLDANANIKEQ 122

Query: 131 REAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEI 190
           REAVESWR+EKL+E KQL+ G  G+NSTILQ+EA MLVR LESDWA LSE +GLWIPTEI
Sbjct: 123 REAVESWRKEKLQEVKQLTYGAGGLNSTILQDEAAMLVRALESDWAVLSENMGLWIPTEI 182

Query: 191 IHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQ 250
           I++EH DKP+G E+ +  E++LPGRP PPECHAELHTDYDG A+RWGLTHH++SAADCCQ
Sbjct: 183 INEEHDDKPEGEEETE--EEILPGRPVPPECHAELHTDYDGAAVRWGLTHHKESAADCCQ 240

Query: 251 ACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEK 310
           AC++QAK AKPG+ KCNIWV+CP+ETGC+SPD Y+HK QECWLKYAE P+LNFKD+YSE 
Sbjct: 241 ACLDQAKHAKPGEKKCNIWVFCPSETGCYSPDIYQHKNQECWLKYAETPRLNFKDKYSES 300

Query: 311 YRNAHPAAPLVVPWVSGVVS 330
           YRN+HP APLVVPWVSGVVS
Sbjct: 301 YRNSHPNAPLVVPWVSGVVS 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137454|ref|XP_002327130.1| predicted protein [Populus trichocarpa] gi|222835445|gb|EEE73880.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 264/317 (83%), Gaps = 3/317 (0%)

Query: 15  KWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDL-KVVKYTPDQIRNMEESVRI 73
           KW CSYK++TLI+C INIV+ALYVLRS+YAS+Y++S +D  KVVKYTPDQ+R MEES+RI
Sbjct: 6   KWGCSYKRSTLIVCSINIVVALYVLRSLYASLYLYSNSDFNKVVKYTPDQVRKMEESIRI 65

Query: 74  RSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREA 133
           R   EP+ LVK+V  LK+EF+R E V  LP+ V  R+ DEIL+RL+S +   N+S QR+A
Sbjct: 66  RRAKEPLELVKIVKELKEEFNRGEMVAGLPKEVTGRITDEILQRLRSLNANANISEQRDA 125

Query: 134 VESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIHK 193
           +ESWR+EKL+E KQL  G  G+NS+IL++EA ML R LESDWA LSE IGLW+P EIIH+
Sbjct: 126 IESWRKEKLQEVKQLVHGTGGLNSSILKQEAGMLERALESDWAVLSENIGLWVPAEIIHQ 185

Query: 194 EHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACI 253
           EH DK     +ED +E+VLPGRP PPECHAELHTDYDG A+RWGL+HH++SAADCCQAC+
Sbjct: 186 EHNDK--PEGEEDPEEEVLPGRPLPPECHAELHTDYDGAAVRWGLSHHKESAADCCQACL 243

Query: 254 EQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRN 313
           +QAK AKPG+ KCN WVYCP+ETGC SPD Y+HK QECWLKYAEKPKLNFKD+YSE YR+
Sbjct: 244 DQAKYAKPGEKKCNTWVYCPSETGCFSPDIYQHKNQECWLKYAEKPKLNFKDKYSESYRD 303

Query: 314 AHPAAPLVVPWVSGVVS 330
           +HP APL+VPWVSGVVS
Sbjct: 304 SHPNAPLIVPWVSGVVS 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470184|ref|XP_004152798.1| PREDICTED: uncharacterized protein LOC101221262 [Cucumis sativus] gi|449496111|ref|XP_004160043.1| PREDICTED: uncharacterized protein LOC101226883 [Cucumis sativus]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/331 (65%), Positives = 265/331 (80%), Gaps = 6/331 (1%)

Query: 1   MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDL-KVVKY 59
           MAR EWGYQG  RGKW CSYKKTT+IIC INI++ALYV RS+YAS+Y++S ND   VVKY
Sbjct: 1   MARVEWGYQG--RGKWTCSYKKTTVIICSINIIVALYVFRSLYASLYLYSDNDSPSVVKY 58

Query: 60  TPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQ 119
           TPDQIR MEE VR+R  +EP+ L+KLV  LK EFS++++V ELP  +K ++ +EIL +L+
Sbjct: 59  TPDQIRKMEEFVRVRRASEPVELIKLVKELK-EFSQEQTVDELPLPLKQKITEEILLKLR 117

Query: 120 SSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALS 179
           S +   N + QREAVE WR+EKLEEA +L   +   NST+  E+A  LV+ LE+DW   S
Sbjct: 118 SLNGSSNSTQQREAVEIWRKEKLEEANKLITEQMLENSTLSFEDAGTLVKALEADWQVFS 177

Query: 180 EEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLT 239
           E IGLWIPTE++H EH DKP+GV++   D+++LPGRP PPEC+AELHTDYDG A+RWGLT
Sbjct: 178 EAIGLWIPTEVVHTEHDDKPEGVDE--FDDEILPGRPVPPECNAELHTDYDGAAVRWGLT 235

Query: 240 HHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKP 299
           HH++SAADCCQAC++ AKRA+PG  KCNIWVYCP+ETGCHSPD YEHK+ ECWLKYAE P
Sbjct: 236 HHKESAADCCQACLDHAKRAQPGDRKCNIWVYCPSETGCHSPDIYEHKHMECWLKYAENP 295

Query: 300 KLNFKDRYSEKYRNAHPAAPLVVPWVSGVVS 330
           KLNFK  Y + YRN+HP AP VVPWVSGVVS
Sbjct: 296 KLNFKTNYPQSYRNSHPTAPFVVPWVSGVVS 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063535|ref|XP_002301192.1| predicted protein [Populus trichocarpa] gi|222842918|gb|EEE80465.1| predicted protein [Populus trichocarpa]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/317 (67%), Positives = 262/317 (82%), Gaps = 3/317 (0%)

Query: 15  KWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDL-KVVKYTPDQIRNMEESVRI 73
           KW CSYK+TTL +C INI IALYVLRS+YAS+Y++S ND  +VVKYTPDQIR MEES+RI
Sbjct: 6   KWGCSYKRTTLFVCSINIFIALYVLRSLYASLYLYSNNDFNRVVKYTPDQIRKMEESIRI 65

Query: 74  RSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREA 133
           R   EP+ LVK+V  LK+EF+R+E+V ELP+ VK ++ DEIL RL+S +   N+S QR A
Sbjct: 66  RRAKEPLELVKIVKELKEEFNREETVIELPKEVKNKITDEILERLRSLNANANISEQRNA 125

Query: 134 VESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEIIHK 193
           VE WR+EKL+E K L+   +G+ S+IL+EEA +LVR LES WA LSE IGLW+P E+IH+
Sbjct: 126 VEKWRKEKLQEVKLLARETEGLTSSILKEEAGILVRALESYWAVLSENIGLWVPAEVIHQ 185

Query: 194 EHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACI 253
           EH DK     +E+ +E+VLPGRP PPECHAELHTDYDG A+RWGL+HH++SAADCCQAC+
Sbjct: 186 EHDDK--PEGEEEPEEEVLPGRPLPPECHAELHTDYDGAAVRWGLSHHKESAADCCQACL 243

Query: 254 EQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEKYRN 313
           +QAK AKPG+ KCN WVYCP+ETGC SPD Y+HK QECWLKYAEKPKLNFKDRYSE YR+
Sbjct: 244 DQAKYAKPGEKKCNTWVYCPSETGCFSPDIYQHKNQECWLKYAEKPKLNFKDRYSESYRD 303

Query: 314 AHPAAPLVVPWVSGVVS 330
           +HP APL+VPWVSGVVS
Sbjct: 304 SHPNAPLIVPWVSGVVS 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437891|ref|XP_003589221.1| hypothetical protein MTR_1g019780 [Medicago truncatula] gi|355478269|gb|AES59472.1| hypothetical protein MTR_1g019780 [Medicago truncatula]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/341 (62%), Positives = 262/341 (76%), Gaps = 15/341 (4%)

Query: 1   MARGEWGYQGLWRG--KWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRN-DLKVV 57
           MAR EWG Q   RG  KW CSYKK T+++C  NI IALY LRS+YAS+Y++S +    +V
Sbjct: 2   MARSEWGIQLQSRGGGKWVCSYKKITILVCLFNIAIALYCLRSLYASLYIYSGSVSRNIV 61

Query: 58  KYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRR 117
            Y PDQIR MEES RIR+  +P+ L+KLV  L+ EFS   +  ELP+ +K ++IDE+L+R
Sbjct: 62  VYKPDQIRKMEESNRIRTSYKPVKLMKLVKELEGEFSIQNTEVELPQHLKQKIIDEVLQR 121

Query: 118 LQSSDVKGN-------VSAQREAVESWRREKLEEAKQLSIGRQGI-NSTILQEEARMLVR 169
           L S + + N       ++ +R+AVE+WR+EKLEE K +S G  GI NSTI  EEA MLV+
Sbjct: 122 LVSLNSRSNNGSHSQGIAMERDAVENWRKEKLEEVKLVSAG--GISNSTISHEEAGMLVK 179

Query: 170 VLESDWAALSEEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDY 229
            LESDWA L+EEIGLWIP E+++ EH DKP GVED  L+E+VLPGR  PPEC  ELHTDY
Sbjct: 180 ALESDWAVLAEEIGLWIPVEVVNVEHNDKPDGVED--LEEEVLPGRALPPECKPELHTDY 237

Query: 230 DGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQ 289
           DG A+RWGLTHH+DSAADCCQAC++ AKRAK G+ KCNIWVYCP+E GCHSPD Y+HK+ 
Sbjct: 238 DGSAVRWGLTHHKDSAADCCQACLDHAKRAKEGEKKCNIWVYCPSEFGCHSPDIYQHKHM 297

Query: 290 ECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVS 330
           ECWLKYAEKPKLNFKDRY E YRN+ P+AP++VPW SGVV+
Sbjct: 298 ECWLKYAEKPKLNFKDRYPEWYRNSRPSAPVIVPWASGVVA 338

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510377|ref|XP_003523915.1| PREDICTED: uncharacterized protein LOC100793928 [Glycine max]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 253/320 (79%), Gaps = 5/320 (1%)

Query: 13  RGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRN-DLKVVKYTPDQIRNMEESV 71
           RGKW CSYKKTTL++CF NI +ALY L S+Y+S+Y++S N    V  Y+PDQIR ME S+
Sbjct: 3   RGKWVCSYKKTTLLVCFFNIAVALYALHSLYSSLYIYSGNVSRNVALYSPDQIRKMELSI 62

Query: 72  RIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDV-KGNVSAQ 130
           +IR + +P+ L+K V  L+ EFS +    ELPR +K  +IDEIL+RL+S +  + +++ +
Sbjct: 63  QIRGEFKPVELIKWVKALEGEFSSETVAVELPRHLKQNIIDEILQRLRSLNFSRTDIAKE 122

Query: 131 REAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEI 190
           RE VESWR+EKLEE K  ++ +   NSTI  EEA MLVR LES+WA L EEIGLWIP ++
Sbjct: 123 REVVESWRKEKLEEVKS-ALVKGTSNSTIPHEEAGMLVRALESNWAVLCEEIGLWIPAQV 181

Query: 191 IHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQ 250
            ++EH DKP+G E+   ++++LPGRP  PECHAELHTDYDG A+RWGLT H+DSAADCCQ
Sbjct: 182 SNEEHDDKPEGAEE--FEDEILPGRPVSPECHAELHTDYDGAAVRWGLTFHKDSAADCCQ 239

Query: 251 ACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEK 310
           AC++ AK AK G+ KCNIWVYCP+E GCHSPD Y+HK+QECWLKYAEKP+LNFKD+Y E 
Sbjct: 240 ACLDHAKHAKEGEKKCNIWVYCPSEFGCHSPDIYQHKHQECWLKYAEKPRLNFKDKYPES 299

Query: 311 YRNAHPAAPLVVPWVSGVVS 330
           YRN+HP+AP++VPWVSGV+S
Sbjct: 300 YRNSHPSAPVIVPWVSGVIS 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519192|ref|XP_003528257.1| PREDICTED: uncharacterized protein LOC100789577 [Glycine max]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/320 (62%), Positives = 254/320 (79%), Gaps = 5/320 (1%)

Query: 13  RGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRN-DLKVVKYTPDQIRNMEESV 71
           RGKW CSYKKTTL++CF NI +ALYVLRS+YAS+Y++S N       Y+PDQIR MEES+
Sbjct: 3   RGKWVCSYKKTTLLVCFFNIAVALYVLRSLYASLYIYSGNVSRNAALYSPDQIRKMEESI 62

Query: 72  RIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQS-SDVKGNVSAQ 130
           +IR + +P+ L+K V  L+ EFS +    +LP  +K  +IDEIL+RL+S +  + +++ +
Sbjct: 63  QIRWEFKPVELIKWVKALEAEFSSETEAVKLPWHLKQNIIDEILQRLRSLNSSRTDIAME 122

Query: 131 REAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWIPTEI 190
           RE VESWR+EKLEE K  ++ +   NSTI  EEA MLVR LESDWA L EEIGLWIP ++
Sbjct: 123 REVVESWRKEKLEEVKS-ALVKGTSNSTIPHEEAGMLVRALESDWAVLCEEIGLWIPAQV 181

Query: 191 IHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQ 250
            +KEH DKP+G E+ +  E+VLPGRP  PECHAELHTDYDG A+RWGLT H+DSAADCCQ
Sbjct: 182 SNKEHDDKPEGAEEFE--EEVLPGRPVSPECHAELHTDYDGAAVRWGLTFHKDSAADCCQ 239

Query: 251 ACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDRYSEK 310
           AC++ AK AK G+ KCNIWVYCP+E GCHSPD Y+HK+QECWLKYAEKP+LNFKD+Y E 
Sbjct: 240 ACLDHAKHAKEGEKKCNIWVYCPSEFGCHSPDIYQHKHQECWLKYAEKPRLNFKDKYPES 299

Query: 311 YRNAHPAAPLVVPWVSGVVS 330
           YRN+HP+AP++VPWVSGV+S
Sbjct: 300 YRNSHPSAPVIVPWVSGVIS 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552196|ref|XP_003544455.1| PREDICTED: uncharacterized protein LOC100778720 [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/324 (62%), Positives = 254/324 (78%), Gaps = 11/324 (3%)

Query: 15  KWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLK-VVKYTPDQIRNMEESVRI 73
           K  CSYKK TL+IC  NIV+ALY LRS+YAS++++S +  + +V Y PDQIR MEES RI
Sbjct: 9   KSICSYKKITLLICLFNIVVALYSLRSLYASLHIYSGSVARNIVVYRPDQIRKMEESNRI 68

Query: 74  RSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQS-SDVKGNVS---- 128
           R   +P+ L+KLV   + EFS +  V ELPR +K ++IDE+L+RL S +    N+S    
Sbjct: 69  RKAYKPVELMKLVKEFEGEFSGETVVVELPRHLKQKIIDEVLQRLGSLNGSSKNISHSQV 128

Query: 129 --AQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIGLWI 186
              +REA+E+WR+EKLEE K L++ R   NSTI  EEA MLVR LESDWA LSEEIGLWI
Sbjct: 129 MAKEREAIENWRKEKLEEVK-LAVVRGTSNSTIPHEEAGMLVRALESDWAVLSEEIGLWI 187

Query: 187 PTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSAA 246
           P E+ ++EH DKP+G  +  ++E+VLPGRP PPEC+ ELHTDYDG A+RWGLTHH+DSAA
Sbjct: 188 PIEVANEEHNDKPEGASE--IEEEVLPGRPLPPECNPELHTDYDGTAVRWGLTHHKDSAA 245

Query: 247 DCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKPKLNFKDR 306
           DCCQAC++QAKRAK G+ KCNIWVYCP++ GCHSPD Y+HK+QECWLKYAEKPKLNFKDR
Sbjct: 246 DCCQACLDQAKRAKEGENKCNIWVYCPSQFGCHSPDIYQHKHQECWLKYAEKPKLNFKDR 305

Query: 307 YSEKYRNAHPAAPLVVPWVSGVVS 330
           Y E YRN+H +AP++VPW SGVVS
Sbjct: 306 YPEWYRNSHLSAPVIVPWASGVVS 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564196|ref|XP_003550342.1| PREDICTED: uncharacterized protein LOC100816724 [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/338 (59%), Positives = 255/338 (75%), Gaps = 11/338 (3%)

Query: 1   MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLK-VVKY 59
           MAR EW  Q   R    CSYKK TL+ICF+NIV+ALY LRS+YAS+ ++S +  + +V Y
Sbjct: 1   MAREEWRLQLHQRANSICSYKKITLLICFLNIVVALYSLRSLYASLSIYSGSVARNIVVY 60

Query: 60  TPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQ 119
            PDQIR MEES RIR   +P+ L+KLV   + EFSR+  V ELPR +K ++ DE+ +RL 
Sbjct: 61  RPDQIRKMEESNRIRKAYKPVELMKLVKEFEGEFSRENVVVELPRHLKQKISDEVSQRLG 120

Query: 120 SSDVKGN-------VSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLE 172
           S +           ++ +REA+E+WR+EKLEE K L++ R   NSTI  EEA MLVR LE
Sbjct: 121 SLNESSKNIFHPQVMAKEREAIENWRKEKLEEVK-LAVVRGTSNSTIPHEEAGMLVRALE 179

Query: 173 SDWAALSEEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDYDGV 232
           SDW  LSEEIGLWIP ++ ++EH DKP+   +  ++E+VLPGRP  PEC+ ELHTDYDG 
Sbjct: 180 SDWDVLSEEIGLWIPIQVANEEHNDKPESTTE--IEEEVLPGRPLQPECNPELHTDYDGT 237

Query: 233 AIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECW 292
           A+RWGLTHH+DSAADCCQAC++QAK AK G+ KCNIWVYCP++ GCHSPD Y+HK++ECW
Sbjct: 238 AVRWGLTHHKDSAADCCQACLDQAKHAKEGENKCNIWVYCPSQFGCHSPDIYQHKHRECW 297

Query: 293 LKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVS 330
           LKYAEK KLNFKDRY E YRN+HP+AP++VPW SGVVS
Sbjct: 298 LKYAEKSKLNFKDRYPEWYRNSHPSAPVIVPWASGVVS 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2119191	328	AT4G33380 [Arabidopsis thalian	0.984	0.993	0.604	1.3e-107
TAIR|locus:4010713411	152	AT1G04555 "AT1G04555" [Arabido	0.416	0.907	0.258	2e-09

TAIR|locus:2119191 AT4G33380 [Arabidopsis thaliana (taxid:3702)]

 Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
 Identities = 200/331 (60%), Positives = 247/331 (74%)

Query:     1 MARGEWGYQGLWRGKWCCSYKKTTLIICFINIVIALYVLRSIYAS-IYVFSRNDLKVVKY 59
             MARG   + G   G    S+K+ TL++CF NI+IAL+VLR +YAS ++++S ND  VVKY
Sbjct:     1 MARGGGEWTGGIAGTGVLSFKRITLLVCFFNILIALFVLRFLYASSLHIYSNND-NVVKY 59

Query:    60 TPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQ 119
             T D+IR MEES+RIR   EP  +++LV  LK E S  ES  EL   VK +++DEIL+RL+
Sbjct:    60 TADEIRKMEESIRIRRSKEPTLILQLVKKLKHEVSTAESSTELSPNVKHKLVDEILQRLK 119

Query:   120 SSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALS 179
             S + K NV+  RE VE+WR EKLEEAK+L  G+ G+NST++ EEA MLVR LE +W  LS
Sbjct:   120 SFEDKSNVTQLREVVETWRNEKLEEAKELIQGQNGVNSTLIVEEAGMLVRALELEWDVLS 179

Query:   180 EEIGLWIPTEIIHKEHGDKPKGXXXXXXXXXXXPGRPPPPECHAELHTDYDGVAIRWGLT 239
             EEIG W+P E+ + EH DKP+G            GRP P  C+AELHTDY G A+RWGLT
Sbjct:   180 EEIGFWLPAEVTNVEHDDKPEGEEEPEEILA---GRPVPAVCNAELHTDYGGAAVRWGLT 236

Query:   240 HHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAEKP 299
             HH++SAADCCQAC++QAKRAKPG+ +CNIWVYCP+E GC SPD YEHK+QECWLKYAEKP
Sbjct:   237 HHKESAADCCQACLDQAKRAKPGETRCNIWVYCPSEFGCFSPDIYEHKHQECWLKYAEKP 296

Query:   300 KLNFKDRYSEKYRNAHPAAPLVVPWVSGVVS 330
             K NFKDRYSE YRN HP AP +VPWVSGVV+
Sbjct:   297 KQNFKDRYSETYRNNHPKAPSIVPWVSGVVT 327

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:4010713411 AT1G04555 "AT1G04555" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 37/143 (25%), Positives = 76/143 (53%)

Query:    12 WRGKWCCSYKKTTLIICFINIVIALYVLRSIYASIYVFSRNDLKVVKYTPDQIRNMEESV 71
             WR ++  S+K  T+ +  IN++I L++L+  + S    S +     +    Q+R ++E+ 
Sbjct:     5 WRMRF--SFKNATIALTVINVLIFLFLLQGFFTSSSSPSSSSSSR-RLISAQLRYIKEAE 61

Query:    72 RIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQR 131
              +R   +P+ L++ V  ++QE S  +   E  + VK     ++ +RL+      + S+ +
Sbjct:    62 ELRLKMQPLELIRRVREIEQEASAGQET-EQQKDVKQTTAVDLSKRLKDFRALNDASSLK 120

Query:   132 EAVESWRREKLEEAKQLSIGRQG 154
              A+E WR+ K+E A+Q  + + G
Sbjct:   121 -ALEEWRKRKMERARQRDLEKTG 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      331       320   0.00084  116 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  263 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.22u 0.10s 27.32t   Elapsed:  00:00:01
  Total cpu time:  27.22u 0.10s 27.32t   Elapsed:  00:00:01
  Start:  Sat May 11 00:24:17 2013   End:  Sat May 11 00:24:18 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014795001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (326 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036134001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (295 aa)							•		0.436

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
pfam14295	48	pfam14295, PAN_4, PAN domain	2e-06

>gnl|CDD|222657 pfam14295, PAN_4, PAN domain

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 20/68 (29%)

Query: 227 TDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEH 286
           TDY G  +R G     DS   CC AC   +         C  W Y               
Sbjct: 1   TDYPGGDLRSG-PVSVDSPEACCAACAADS--------GCRAWTYVDPA----------- 40

Query: 287 KYQECWLK 294
               CWLK
Sbjct: 41  SGGTCWLK 48

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PF14295	51	PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.	98.32
cd01100	73	APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d	95.26
smart00223	79	APPLE APPLE domain. Four-fold repeat in plasma kal	94.51

>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A

Probab=98.32  E-value=2.4e-07  Score=64.64  Aligned_cols=51  Identities=33%  Similarity=0.682  Sum_probs=18.7

Q ss_pred             cccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccc
Q 020080          227 TDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK  294 (331)
Q Consensus       227 tdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK  294 (331)
                      |||.|..+... .....|+++|+++|.+        ..+|+.|+|.+.  ++.+      ..+.||||
T Consensus         1 ~d~~G~dl~~~-~~~~~s~~~C~~~C~~--------~~~C~~~~~~~~--~~~~------~~~~C~LK   51 (51)
T PF14295_consen    1 TDYPGGDLRSF-PVTASSPEECQAACAA--------DPGCQAFTFNPP--GCPS------SSGRCYLK   51 (51)
T ss_dssp             ------------------HHHHHHHHHT--------STT--EEEEETT--EE----------------
T ss_pred             Ccccccccccc-cccCCCHHHHHHHccC--------CCCCCEEEEECC--Cccc------ccccccCC
Confidence            68899988776 3488999999999997        468999999996  2322      46899998

>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins

Probab=95.26  E-value=0.019  Score=43.78  Aligned_cols=56  Identities=30%  Similarity=0.622  Sum_probs=42.9

Q ss_pred             CCcccccc-ccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccccc
Q 020080          218 PPECHAEL-HTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYA  296 (331)
Q Consensus       218 ~~~C~~e~-htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~  296 (331)
                      +..|+... +++|.|.-+.   .....++++|+++|..+        ..|..|.|=.             ..+.||||..
T Consensus         2 ~~~C~~~~~~~~~~g~d~~---~~~~~s~~~Cq~~C~~~--------~~C~afT~~~-------------~~~~C~lk~~   57 (73)
T cd01100           2 PSSCFRQGSNVDFRGGDLS---TVFASSAEQCQAACTAD--------PGCLAFTYNT-------------KSKKCFLKSS   57 (73)
T ss_pred             CcccccccCCCccccCCcc---eeecCCHHHHHHHcCCC--------CCceEEEEEC-------------CCCeEEcccC
Confidence            45677765 9999996553   23478999999999984        6899999943             2479999987


Q ss_pred             C
Q 020080          297 E  297 (331)
Q Consensus       297 ~  297 (331)
                      .
T Consensus        58 ~   58 (73)
T cd01100          58 E   58 (73)
T ss_pred             C
Confidence            4

PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

>smart00223 APPLE APPLE domain

Probab=94.51  E-value=0.055  Score=43.08  Aligned_cols=53  Identities=25%  Similarity=0.446  Sum_probs=42.3

Q ss_pred             cccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccccc
Q 020080          223 AELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYA  296 (331)
Q Consensus       223 ~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~  296 (331)
                      +..++||.|.-+.   .-...++.+|+..|..+        ..|-.|.|=......          ..||||..
T Consensus         5 ~~~~~df~G~Dl~---~~~~~~~~~Cq~~Ct~~--------~~C~~FTf~~~~~~~----------~~C~LK~s   57 (79)
T smart00223        5 IYKNVDFRGSDIN---TVYVPSAQVCQKRCTSH--------PRCLFFTFSTNEPPE----------EKCLLKDS   57 (79)
T ss_pred             hccCccccCceee---eeecCCHHHHHHhhcCC--------CCccEEEeeCCCCCC----------CEeEeCcC
Confidence            3578999988663   44679999999999975        589999999986432          17999987

Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 46/320 (14%), Positives = 99/320 (30%), Gaps = 89/320 (27%)

Query: 35  ALYVLRSIYAS--IYVFSRNDL--KVVKYTPDQ----IRNMEESVRIRSDNEPMALVKLV 86
            L VL ++  +     F   +L  K++  T  +      +   +  I  D+  M L    
Sbjct: 246 CLLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-- 300

Query: 87  NGLKQEFSR--DESVFELPRAVK------LRMIDEILRRLQSSDVKGNVSAQREAVESWR 138
           + +K    +  D    +LPR V       L +I E +R   ++             ++W+
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT------------WDNWK 348

Query: 139 R---EKLEEAKQLSIG-------RQGINS-TILQEEARMLVRVLESDWAALSEEIGLWIP 187
               +KL    + S+        R+  +  ++    A +   +L   W  + +       
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS----DV 404

Query: 188 TEIIHKEHGDKPKGVEDEDLDEDV--LPGRPPPPECHAELHTDYDGVAIRWGLTHHRDSA 245
             +++K H      + ++   E    +P        + EL    +          HR   
Sbjct: 405 MVVVNKLHK---YSLVEKQPKESTISIPS------IYLELKVKLENEY-----ALHR--- 447

Query: 246 ADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKY-------QECWLKYAEK 298
                + ++     K          +   +      D+Y + +        E   +    
Sbjct: 448 -----SIVDHYNIPK---------TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 299 PKLNFKDRYSE-KYRNAHPA 317
             +    R+ E K R+   A
Sbjct: 494 RMVFLDFRFLEQKIRHDSTA 513

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
2yil_A	138	Microneme antigen L2; sugar binding protein, apple	94.15
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	93.68
4a5v_A	161	MIC4, micronemal protein 4; adhesion; NMR {Toxopla	93.46
2yil_A	138	Microneme antigen L2; sugar binding protein, apple	93.24
4a5v_A	161	MIC4, micronemal protein 4; adhesion; NMR {Toxopla	92.76
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	92.12

>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*

Probab=94.15  E-value=0.017  Score=49.37  Aligned_cols=65  Identities=14%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             ccccCCCCCCCC-ccccccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCC
Q 020080          208 DEDVLPGRPPPP-ECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEH  286 (331)
Q Consensus       208 ~~~~~~g~p~~~-~C~~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~  286 (331)
                      ..+++.|...++ .| .+.+.||.|..+.- ......|+.+|.++|.+        +.+|..|.|=.             
T Consensus        68 ~~g~vSGpk~C~~~C-~~~~vdy~G~d~~~-~~~s~~~a~~CQ~~C~~--------~~~C~~fTf~~-------------  124 (138)
T 2yil_A           68 YTGDMTGPRSCEHNC-SDACWMDGNNPLAV-WDYSGQPPALCWAACMG--------TPGCDLYTFQG-------------  124 (138)
T ss_dssp             CTTEEEEESCTTCCC-CSSEETTCCCCSEE-EECTTCCTHHHHHHHHT--------STTCCEEECGG-------------
T ss_pred             cCCceecCCcCcccH-HhcCCCccCccccc-cccccCCHHHHHHHhCC--------CCCCcEEEEeC-------------
Confidence            457777744333 66 78999999987754 33444689999999997        46899999854             


Q ss_pred             CCccccccccC
Q 020080          287 KYQECWLKYAE  297 (331)
Q Consensus       287 ~~geCWLK~~~  297 (331)
                        +.||||..+
T Consensus       125 --~tC~lk~~d  133 (138)
T 2yil_A          125 --MTCKLYSQT  133 (138)
T ss_dssp             --GEEEEECCC
T ss_pred             --CeeEEECCc
Confidence              489999764

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=93.68  E-value=0.06  Score=54.63  Aligned_cols=65  Identities=20%  Similarity=0.476  Sum_probs=48.0

Q ss_pred             CCCccc--cccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccc
Q 020080          217 PPPECH--AELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK  294 (331)
Q Consensus       217 ~~~~C~--~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK  294 (331)
                      .++.|+  .+.++||.|.-+.   .....|+++||..|.++        .+|-.|.|=+...-  +    ....+.||||
T Consensus       106 ~~~~C~~~~~~~~d~~G~d~~---~~~~~s~~~C~~~C~~~--------~~C~~fTy~~~~~~--~----~~~~~~C~LK  168 (625)
T 2f83_A          106 QISACNKDIYVDLDMKGINYN---SSVAKSAQECQERCTDD--------VHCHFFTYATRQFP--S----LEHRNICLLK  168 (625)
T ss_dssp             CCCCCCCCCEEEEEEECEEEE---EEECSCHHHHHHHHHTS--------SSCSEEEEECSSCS--C----SSSTTEEEEE
T ss_pred             ChhcCchhhccccceecceee---eEeeCCHHHHHHhccCC--------CCCcEEEecCCccc--C----CCCCceeEec
Confidence            455786  4589999997654   25678999999999984        68999999775421  1    1245789999


Q ss_pred             ccCC
Q 020080          295 YAEK  298 (331)
Q Consensus       295 ~~~~  298 (331)
                      ....
T Consensus       169 ~s~~  172 (625)
T 2f83_A          169 HTQT  172 (625)
T ss_dssp             ECSS
T ss_pred             cCcC
Confidence            9754

>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}

Probab=93.46  E-value=0.11  Score=44.69  Aligned_cols=67  Identities=22%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             ccccCCCCC-CCCccccccccccCcc-ccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccC
Q 020080          208 DEDVLPGRP-PPPECHAELHTDYDGV-AIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYE  285 (331)
Q Consensus       208 ~~~~~~g~p-~~~~C~~e~htdy~G~-aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~  285 (331)
                      ..+++-|.. -++.|+. .++||.|. -|.  ......++.+|+++|.+        ..+|..|.|=.            
T Consensus        70 ~~g~iSG~k~C~~~C~~-~~vD~~G~~dl~--~~~~~~s~~~Cq~~C~~--------~~~C~~fTy~~------------  126 (161)
T 4a5v_A           70 LTGGKTASRSCDRSCFE-QHVSYEGAPDVM--TAMVTSQSADCQAACAA--------DPSCEIFTYNE------------  126 (161)
T ss_dssp             CTTEEEEESCCCCTTCE-ESEEECSSCBSS--CCCBCSCHHHHHHHHHH--------CTTCCEEEEET------------
T ss_pred             cCCceeCCCcCCcchhh-CCCcccCchhcc--ccccCCCHHHHHHHccc--------CCCCCEEEeeC------------
Confidence            345555621 2236766 89999998 442  23567899999999998        46899999973            


Q ss_pred             CCCccccccccCC
Q 020080          286 HKYQECWLKYAEK  298 (331)
Q Consensus       286 ~~~geCWLK~~~~  298 (331)
                       ..+.||||....
T Consensus       127 -~~~~C~LK~~~~  138 (161)
T 4a5v_A          127 -HDQKCTFKGRGF  138 (161)
T ss_dssp             -TTTEEEEECTTT
T ss_pred             -CCCeeEeCCCCC
Confidence             357999998864

>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*

Probab=93.24  E-value=0.055  Score=46.15  Aligned_cols=51  Identities=25%  Similarity=0.402  Sum_probs=37.0

Q ss_pred             ccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCccccccccC
Q 020080          226 HTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAE  297 (331)
Q Consensus       226 htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~~  297 (331)
                      |...+|..+.--..-.+.|+++|.+.|+++        .+|..|.|=.+             -+.||||...
T Consensus        12 h~~n~G~~~~~i~~~~v~Sa~~Cq~~C~~~--------~~C~~FTf~~~-------------~k~C~LK~~~   62 (138)
T 2yil_A           12 HDKNIGSRTEQLSVVHVASAQDCMKECQAL--------PTCSHFTYNKN-------------SKKCHLKAGA   62 (138)
T ss_dssp             SSSCEEECSCEEEEEECSSHHHHHHHHHHS--------TTCCEEEEETT-------------TCEEEEECSC
T ss_pred             ccCccCcchhcccccCCCCHHHHHHHccCC--------CCCCEEEEECC-------------CCEEEeccCc
Confidence            444555544322355679999999999985        58999999554             2689999753

>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}

Probab=92.76  E-value=0.15  Score=43.89  Aligned_cols=56  Identities=18%  Similarity=0.305  Sum_probs=44.9

Q ss_pred             CccccccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCccccccccC
Q 020080          219 PECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAE  297 (331)
Q Consensus       219 ~~C~~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~~  297 (331)
                      -.|--..|..|.|-.|  +......|+.+||..|..+        .+|..|+|=..             .+.||||...
T Consensus         9 ~~c~~~~n~~~~g~~i--~~~~~~~s~~~Cq~~C~~~--------p~C~~fTf~~~-------------~~~C~LK~s~   64 (161)
T 4a5v_A            9 LSCVHSDNKGSRAPTI--GEPVPDVSLEQCAAQCKAV--------DGCTHFTYNDD-------------SKMCHVKEGK   64 (161)
T ss_dssp             CSSCCCSSEEECSCBC--SCCBTTCCHHHHHHHHHHS--------TTCSEEEEETT-------------TCCEEEECSS
T ss_pred             eeEEcCCCccccCCCe--eeeecCCCHHHHHHHCcCC--------CCCcEEEEECC-------------CCEEEEeCCC
Confidence            4677777888887776  3566889999999999995        58999999743             3689999765

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=92.12  E-value=0.12  Score=52.51  Aligned_cols=65  Identities=22%  Similarity=0.376  Sum_probs=45.4

Q ss_pred             CCCcccc--ccccccCccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCcccccc
Q 020080          217 PPPECHA--ELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK  294 (331)
Q Consensus       217 ~~~~C~~--e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK  294 (331)
                      +..+|..  .+++||.|..+.   .-...+|++||..|..+        .+|..|.|=....+=..     .+..-||||
T Consensus        16 ~~~~c~~~~~~~~d~~G~d~~---~v~~~~~~~C~~~C~~~--------~~C~~ft~~~~~~~~~~-----~~~~~C~LK   79 (625)
T 2f83_A           16 VSGECVTQLLKDTCFEGGDIT---TVFTPSAKYCQVVCTYH--------PRCLLFTFTAESPSEDP-----TRWFTCVLK   79 (625)
T ss_dssp             ----CCCSCEEEEEECSCEEE---EEECSSHHHHHHHHHHS--------SSCCEEEEECCCTTSCS-----TTTTEEEEE
T ss_pred             hccchhhhhcccccccCCcee---EEecCCHHHHHHhccCC--------CCeeEEEEeCCCCCccc-----cccceEEec
Confidence            4556754  589999999876   33356899999999995        58999999987532111     134679999


Q ss_pred             ccC
Q 020080          295 YAE  297 (331)
Q Consensus       295 ~~~  297 (331)
                      -..
T Consensus        80 ~~~   82 (625)
T 2f83_A           80 DSV   82 (625)
T ss_dssp             CCG
T ss_pred             ccc
Confidence            754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00