Citrus Sinensis ID: 020087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV
ccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEEcEEEcccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHEEEEEHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHEHEHHHccccc
mgtqgpattdqnynhaTSEEQAAKQKAiddwlpitssrnaKWWYSAFHNVTAMVGAGVLSLPYAmaqlgwgpGVAILILSWIITLYTLWQMVEMhemvpgkrfdryhELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCkepckeikLSYFIMIFASVHFVLshlpnfnaiAGVSLAAAVMSLSYSTIAWSasvrkgvqpdvaygykaktaagTVFNFFSALGDVAFAYAGHNVVLEIQatipstpekpskgpmwrGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIllslekptwlIVMANFFVVVHVIGSYQV
mgtqgpattdqnynhATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIpstpekpskgpMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV
***************************IDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI**********PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGS***
****************************************KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP*******KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV
*************************KAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV
****************************DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHii
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHii
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MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query331 2.2.26 [Sep-21-2011]
Q9FKS8 446 Lysine histidine transpor yes no 0.957 0.710 0.849 1e-161
Q9LRB5 441 Lysine histidine transpor no no 0.963 0.723 0.790 1e-150
Q9C733 453 Lysine histidine transpor no no 0.975 0.713 0.763 1e-143
Q9SR44 441 Lysine histidine transpor no no 0.945 0.709 0.786 1e-143
O22719 451 Lysine histidine transpor no no 0.975 0.716 0.660 1e-128
Q9SS86 455 Lysine histidine transpor no no 0.948 0.690 0.676 1e-124
Q9C6M2 440 Lysine histidine transpor no no 0.936 0.704 0.620 1e-112
Q9C9J0 448 Lysine histidine transpor no no 0.972 0.718 0.592 1e-104
Q9SX98 519 Lysine histidine transpor no no 0.930 0.593 0.393 2e-62
Q84WE9 478 Lysine histidine transpor no no 0.882 0.610 0.333 3e-48
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  568 bits (1463), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/319 (84%), Positives = 296/319 (92%), Gaps = 2/319 (0%)

Query: 14  NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
           +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct: 9   DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query: 73  GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
           G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct: 69  GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
           GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query: 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
           AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct: 188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query: 253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
           IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct: 248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query: 313 LIVMANFFVVVHVIGSYQV 331
           LI  AN FVV+HVIGSYQ+
Sbjct: 308 LIATANIFVVIHVIGSYQI 326
Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
356558769 450 PREDICTED: lysine histidine transporter 0.996 0.733 0.839 1e-164
255537003 440 amino acid transporter, putative [Ricinu 0.954 0.718 0.870 1e-162
297805586 445 hypothetical protein ARALYDRAFT_916150 [ 0.957 0.712 0.855 1e-161
356574036 450 PREDICTED: lysine histidine transporter 0.996 0.733 0.815 1e-160
225452181 442 PREDICTED: lysine histidine transporter 0.972 0.728 0.836 1e-160
30693666 445 Lysine histidine transporter 1 [Arabidop 0.957 0.712 0.849 1e-160
30693663 446 Lysine histidine transporter 1 [Arabidop 0.957 0.710 0.849 1e-159
224055679 433 lysine/histidine transporter [Populus tr 0.927 0.709 0.886 1e-158
332713917 466 LHT-type plant amino acid transporter 1. 0.954 0.678 0.844 1e-158
449441618 2819 PREDICTED: uncharacterized protein LOC10 0.951 0.111 0.832 1e-157
>gi|356558769|ref|XP_003547675.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 278/331 (83%), Positives = 303/331 (91%), Gaps = 1/331 (0%)

Query: 1   MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLS 60
           MGTQ     D NY    +EE+  +QKAI+DWLPITSSRNAKWWYSAFHNVTAMVGAGVLS
Sbjct: 1   MGTQSQTPIDNNYLKNATEEELQRQKAINDWLPITSSRNAKWWYSAFHNVTAMVGAGVLS 60

Query: 61  LPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120
           LPYAM++LGWGPGV +LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ+AFGEKLGL
Sbjct: 61  LPYAMSELGWGPGVTVLILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQYAFGEKLGL 120

Query: 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180
           YIVVPQQL+VE+GV IVYMVTGGKSL K H+ +C + CK+IKL++FIMIFASVHFVLSHL
Sbjct: 121 YIVVPQQLVVEIGVNIVYMVTGGKSLQKFHDTVC-DSCKKIKLTFFIMIFASVHFVLSHL 179

Query: 181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDV 240
           PNFN+I+GVSLAAAVMSLSYSTIAW+AS  KGVQ +V YGYKAK+ +GTVFNFFSALGDV
Sbjct: 180 PNFNSISGVSLAAAVMSLSYSTIAWAASAHKGVQENVEYGYKAKSTSGTVFNFFSALGDV 239

Query: 241 AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE 300
           AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN VE
Sbjct: 240 AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNTVE 299

Query: 301 DNILLSLEKPTWLIVMANFFVVVHVIGSYQV 331
           DNIL+SLEKP WLI MAN FVV+HVIGSYQ+
Sbjct: 300 DNILISLEKPKWLIAMANMFVVIHVIGSYQI 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537003|ref|XP_002509568.1| amino acid transporter, putative [Ricinus communis] gi|223549467|gb|EEF50955.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225452181|ref|XP_002265308.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|296090261|emb|CBI40080.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224055679|ref|XP_002298599.1| lysine/histidine transporter [Populus trichocarpa] gi|222845857|gb|EEE83404.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|332713917|gb|AEE98384.1| LHT-type plant amino acid transporter 1.2 [Lotus japonicus] Back     alignment and taxonomy information
>gi|449441618|ref|XP_004138579.1| PREDICTED: uncharacterized protein LOC101220661 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
TAIR|locus:2154815 446 LHT1 "lysine histidine transpo 0.957 0.710 0.849 8.8e-150
UNIPROTKB|Q85V22 441 ht "Histidine amino acid trans 0.939 0.705 0.820 1.9e-140
TAIR|locus:2024071 441 LHT2 "lysine histidine transpo 0.963 0.723 0.790 3.5e-139
TAIR|locus:2008154 453 AT1G48640 [Arabidopsis thalian 0.975 0.713 0.763 4.6e-137
TAIR|locus:2008605 441 AT1G67640 "AT1G67640" [Arabido 0.945 0.709 0.786 7.4e-137
TAIR|locus:2008435 451 AT1G61270 [Arabidopsis thalian 0.975 0.716 0.660 9.8e-119
TAIR|locus:2031215 440 AT1G25530 [Arabidopsis thalian 0.945 0.711 0.617 1.1e-105
TAIR|locus:2013056 448 AT1G71680 [Arabidopsis thalian 0.972 0.718 0.596 1.1e-101
TAIR|locus:2015383 519 AT1G47670 [Arabidopsis thalian 0.915 0.583 0.396 1.5e-60
TAIR|locus:2132816 478 LHT7 "LYS/HIS transporter 7" [ 0.815 0.564 0.351 3.7e-48
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1462 (519.7 bits), Expect = 8.8e-150, P = 8.8e-150
 Identities = 271/319 (84%), Positives = 296/319 (92%)

Query:    14 NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
             +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct:     9 DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query:    73 GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
             G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct:    69 GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query:   133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
             GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct:   129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query:   193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
             AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct:   188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query:   253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
             IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct:   248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query:   313 LIVMANFFVVVHVIGSYQV 331
             LI  AN FVV+HVIGSYQ+
Sbjct:   308 LIATANIFVVIHVIGSYQI 326
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS;RCA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP
GO:0016020 "membrane" evidence=ISS
GO:0043090 "amino acid import" evidence=RCA;IMP
GO:0080167 "response to karrikin" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKS8LHT1_ARATHNo assigned EC number0.84950.95770.7107yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
pfam01490 406 pfam01490, Aa_trans, Transmembrane amino acid tran 4e-91
COG0814 415 COG0814, SdaC, Amino acid permeases [Amino acid tr 8e-13
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 3e-05
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 4e-05
PLN03074 473 PLN03074, PLN03074, auxin influx permease; Provisi 0.003
PRK15132 403 PRK15132, PRK15132, tyrosine transporter TyrP; Pro 0.003
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  277 bits (711), Expect = 4e-91
 Identities = 112/297 (37%), Positives = 164/297 (55%), Gaps = 10/297 (3%)

Query: 38  RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM 97
                W + F+ + A++GAGVLSLPYA  QLGW PG+ +L++  +I+LYTL  +V+  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 98  VP---GKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC 154
           V    GKR   Y +LG   FG K G  +++   L+   GVCI Y++  G +L  + +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 155 KEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ 214
                 I L YFI+IF  +   LS +PN +A++ +SL AAV SL Y  I   +    GV 
Sbjct: 120 DT--CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVL 176

Query: 215 PDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274
                G         +   F A+G + FA+ GH V+L IQ T+ S P K     M + ++
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK--FKAMTKVLL 233

Query: 275 VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQV 331
            A I+V + Y  V L+GY  FGN V+ NILL+L K  WLI +AN  +V+H++ SY +
Sbjct: 234 TAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPL 290

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|185086 PRK15132, PRK15132, tyrosine transporter TyrP; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 331
PTZ00206 467 amino acid transporter; Provisional 100.0
KOG1303 437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304 449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490 409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074 473 auxin influx permease; Provisional 100.0
KOG1305 411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303 524 consensus Vesicular inhibitory amino acid transpor 99.97
COG0814 415 SdaC Amino acid permeases [Amino acid transport an 99.97
PRK10483 414 tryptophan permease; Provisional 99.87
PF03222 394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.86
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.86
PRK09664 415 tryptophan permease TnaB; Provisional 99.85
PRK15132 403 tyrosine transporter TyrP; Provisional 99.82
PRK13629 443 threonine/serine transporter TdcC; Provisional 99.74
TIGR00814397 stp serine transporter. The HAAAP family includes 99.73
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 99.68
PRK10655 438 potE putrescine transporter; Provisional 99.67
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.64
PRK10249 458 phenylalanine transporter; Provisional 99.61
PRK10644 445 arginine:agmatin antiporter; Provisional 99.61
TIGR00909 429 2A0306 amino acid transporter. 99.61
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.61
PRK11387 471 S-methylmethionine transporter; Provisional 99.61
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.6
PRK15049 499 L-asparagine permease; Provisional 99.6
PRK11021 410 putative transporter; Provisional 99.59
TIGR00930 953 2a30 K-Cl cotransporter. 99.58
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 99.58
PRK10836 489 lysine transporter; Provisional 99.57
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.56
PRK10238 456 aromatic amino acid transporter; Provisional 99.55
TIGR00911 501 2A0308 L-type amino acid transporter. 99.55
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 99.54
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.54
PRK10580 457 proY putative proline-specific permease; Provision 99.52
PRK10746 461 putative transport protein YifK; Provisional 99.52
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.52
TIGR00913 478 2A0310 amino acid permease (yeast). 99.5
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 99.5
PRK11357 445 frlA putative fructoselysine transporter; Provisio 99.49
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.43
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.42
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.42
PF03845320 Spore_permease: Spore germination protein; InterPr 99.36
PF13520 426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.33
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 99.31
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.3
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 99.21
TIGR00907 482 2A0304 amino acid permease (GABA permease). 99.16
PRK15238 496 inner membrane transporter YjeM; Provisional 99.12
KOG3832319 consensus Predicted amino acid transporter [Genera 99.07
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.98
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.75
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.51
TIGR00800 442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.42
COG3949349 Uncharacterized membrane protein [Function unknown 98.05
PRK11375 484 allantoin permease; Provisional 97.96
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 97.88
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.8
PRK09442 483 panF sodium/panthothenate symporter; Provisional 97.78
PRK12488 549 acetate permease; Provisional 97.72
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.7
TIGR00813 407 sss transporter, SSS family. have different number 97.6
PRK09395 551 actP acetate permease; Provisional 97.59
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 97.57
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.49
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.46
TIGR02358 386 thia_cytX probable hydroxymethylpyrimidine transpo 97.41
COG1457 442 CodB Purine-cytosine permease and related proteins 97.38
PRK11017 404 codB cytosine permease; Provisional 97.34
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.25
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.19
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.18
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 97.16
PF02133 440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.1
PRK15015 701 carbon starvation protein A; Provisional 97.06
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 97.05
PRK10484 523 putative transporter; Provisional 96.81
PRK15419 502 proline:sodium symporter PutP; Provisional 96.71
PF00474 406 SSF: Sodium:solute symporter family; InterPro: IPR 96.65
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.49
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 95.82
COG4147 529 DhlC Predicted symporter [General function predict 95.57
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.8
KOG2466 572 consensus Uridine permease/thiamine transporter/al 94.6
PF05525 427 Branch_AA_trans: Branched-chain amino acid transpo 94.25
PF01235 416 Na_Ala_symp: Sodium:alanine symporter family; Inte 94.12
PF01566358 Nramp: Natural resistance-associated macrophage pr 93.71
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 93.7
PRK00701 439 manganese transport protein MntH; Reviewed 93.44
PHA02764399 hypothetical protein; Provisional 93.38
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.11
COG1914 416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 92.84
PRK15433 439 branched-chain amino acid transport system 2 carri 90.35
COG0733 439 Na+-dependent transporters of the SNF family [Gene 89.17
PRK15433439 branched-chain amino acid transport system 2 carri 84.86
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 81.25
PRK09950 506 putative transporter; Provisional 80.32
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.6e-43  Score=328.11  Aligned_cols=285  Identities=19%  Similarity=0.241  Sum_probs=235.1

Q ss_pred             CCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHhCccc
Q 020087           39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL  118 (331)
Q Consensus        39 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~  118 (331)
                      +.|..++++|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.++.++ ++  ..+|+|++++++|| +
T Consensus        59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~-~  134 (467)
T PTZ00206         59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP-W  134 (467)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-H
Confidence            55779999999999999999999999999999999999999999999999999998874 33  35999999999998 5


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCC--CC-CccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 020087          119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP--CK-EIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV  195 (331)
Q Consensus       119 g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~--~~-~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~~  195 (331)
                      +++++++.+.+.++|+|++|+++.+|.+..+++.....+  .. ..++..+.++..++++|++++|++++++++|.++..
T Consensus       135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~  214 (467)
T PTZ00206        135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS  214 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence            679999999999999999999999999998886432110  00 112334455667789999999999999999999998


Q ss_pred             HHHHHHHhhheeeeeecCCCccc---cccc---cccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccc
Q 020087          196 MSLSYSTIAWSASVRKGVQPDVA---YGYK---AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM  269 (331)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~  269 (331)
                      +.+..++.+++....++..++.+   .+.+   .........+++.++++++|||.||.+++++++||    |||+++++
T Consensus       215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~  290 (467)
T PTZ00206        215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKF  290 (467)
T ss_pred             HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHH
Confidence            77766666555554443322111   1110   00111223468899999999999999999999999    88888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhhCC-CCChHHHHHHHHHHHHHhheeecC
Q 020087          270 WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQV  331 (331)
Q Consensus       270 ~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~i~v~~syPl  331 (331)
                      .+++..++.+++++|.++|++||++||+++++++++|+ |.++....++++++++.++.+|||
T Consensus       291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL  353 (467)
T PTZ00206        291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYAL  353 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999999999999999 566788999999999999999996

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.72
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 99.59
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.39
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.55
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.9
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 95.76
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 87.03
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.72  E-value=2.1e-16  Score=147.58  Aligned_cols=248  Identities=17%  Similarity=0.117  Sum_probs=167.7

Q ss_pred             cccCCCcHHHHHHHHHhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccHHHHHHHHh
Q 020087           35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF  114 (331)
Q Consensus        35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~i~~i~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~  114 (331)
                      +++|+.+.++.+...+++++|+|++.+|....+.|. .+++.+++.+++.......+.|...+.|+.+  ...+..++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence            356789999999999999999999999998888886 4888889999999999999999988888754  6777779999


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCCCccchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 020087          115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA  194 (331)
Q Consensus       115 G~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~~pl~~~~~~~~l~~~s~~~~  194 (331)
                      ||++| ++..+..++.......++....++++...++...    ..+....+.+ ..++++.....+..+...+++.+..
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCV-VVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHH
Confidence            99888 8888888887777777777777777765544321    0011111111 1111222223346666666665555


Q ss_pred             HHHHHHHHhhheeeeeecCCCccccccccccccchHhHHHHHHHHHHhHhccccchhhhhhhCCCCCCCCCCccchhHHH
Q 020087          195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV  274 (331)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~  274 (331)
                      ...+..++.+++..+...........+. .....++.++..++...+|+|.|++......+|+    |||+| +.+|++.
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~  229 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATI  229 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHH
Confidence            5444333333222222211111111111 1112246688999999999999999999999999    99976 6999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCC
Q 020087          275 VAYIVVALCYFPVALIGYWMFGN  297 (331)
Q Consensus       275 ~~~~~~~~~y~~~~~~gy~~fg~  297 (331)
                      .+..+++++|++..+......+.
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCH
Confidence            99999999999988776666553
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 82.06
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.06  E-value=15  Score=31.82  Aligned_cols=108  Identities=17%  Similarity=0.176  Sum_probs=59.1

Q ss_pred             cHHHHHHHHHhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHH----HHHHHHhhhhcCCcccccHHHHHHHHhC
Q 020087           41 KWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYT----LWQMVEMHEMVPGKRFDRYHELGQHAFG  115 (331)
Q Consensus        41 s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~i~~i~~~~~~~~t----~~~l~~~~~~~~~~~~~~y~~l~~~~~G  115 (331)
                      |..+-++..++..+|.| +--.||-..+-|-..-++..++..++....    =..+.+..+ ...  ...+..+.....+
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~g~--i~~~~~i~~~~~~   82 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-AQG--HGTTPAIFYLLWR   82 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTT--CCSHHHHHHHHSC
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCc--ccHHHHHHHHhcc
Confidence            55788889999999999 457999976555333333333333333333    233333322 111  3467777666655


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 020087          116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL  152 (331)
Q Consensus       116 ~~~g~~~~~~~~~i~~~g~~~~y~i~~~~~l~~l~~~  152 (331)
                      .+.. ..+.+...+..+..++-|.+..+-.+..+...
T Consensus        83 ~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          83 NRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             SHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333 33444455555556666666655555444443