Citrus Sinensis ID: 020091
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | 2.2.26 [Sep-21-2011] | |||||||
| Q94C27 | 351 | F-box protein At1g70590 O | yes | no | 0.990 | 0.934 | 0.594 | 1e-108 | |
| Q9ESM7 | 794 | Protein sel-1 homolog 1 O | N/A | no | 0.598 | 0.249 | 0.293 | 1e-12 | |
| Q9UBV2 | 794 | Protein sel-1 homolog 1 O | yes | no | 0.586 | 0.244 | 0.276 | 4e-12 | |
| Q80Z70 | 794 | Protein sel-1 homolog 1 O | yes | no | 0.598 | 0.249 | 0.288 | 1e-11 | |
| Q9Z2G6 | 790 | Protein sel-1 homolog 1 O | yes | no | 0.598 | 0.250 | 0.288 | 1e-11 | |
| Q9ZG88 | 974 | Localization factor PodJL | yes | no | 0.450 | 0.152 | 0.333 | 1e-11 | |
| B8GXA0 | 974 | Localization factor PodJL | yes | no | 0.450 | 0.152 | 0.333 | 1e-11 | |
| P77234 | 325 | Uncharacterized protein Y | N/A | no | 0.459 | 0.467 | 0.289 | 1e-08 | |
| Q3V172 | 688 | Protein sel-1 homolog 2 O | no | no | 0.583 | 0.280 | 0.255 | 3e-08 | |
| Q5TEA6 | 688 | Protein sel-1 homolog 2 O | no | no | 0.610 | 0.293 | 0.25 | 1e-07 |
| >sp|Q94C27|FB84_ARATH F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/348 (59%), Positives = 252/348 (72%), Gaps = 20/348 (5%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELT----ASARKARIKRRSRFSCSRSIKST 56
MKQRTWP RS GSRF++L F ++R ++ A+A+ R S S S S
Sbjct: 1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60
Query: 57 EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
E DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61 EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120
Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ--- 172
VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE +KE A++LYR+A+ LGD Q
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180
Query: 173 --------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224
P+N +EA+K L Q++ G+VRAQYQLALCLH GR V NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240
Query: 225 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 284
GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300
Query: 285 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 328
+YLELA R GE AA VK V+ QQLSAT + A+ ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ESM7|SE1L1_MESAU Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 20/218 (9%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446
Query: 169 PAAQPA-------------NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215
P Q N + A+K +A+ G V Q QL + G GV + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 216 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 275
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566
Query: 276 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 312
+G+ AVV YL LA + E A + IL Q AT
Sbjct: 567 KDGDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 603
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mesocricetus auratus (taxid: 10036) |
| >sp|Q9UBV2|SE1L1_HUMAN Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446
Query: 169 PAAQPA-------------NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215
P Q N + A+K +A+ G V Q QL + G GV + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 216 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 275
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566
Query: 276 TEGEMMKAVV-YLELATRAGETAADHVKNVILQ 307
+G+ AV+ YL LA + E A + ++ Q
Sbjct: 567 KDGDYNAAVIQYLLLAEQGYEVAQSNAAFILDQ 599
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May play a role in Notch signaling (By similarity). May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Homo sapiens (taxid: 9606) |
| >sp|Q80Z70|SE1L1_RAT Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 20/218 (9%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446
Query: 169 PAAQPA-------------NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215
P Q N + A+K +A+ G V Q QL + G GV + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 216 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 275
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566
Query: 276 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 312
+ + AVV YL LA + E A + IL Q AT
Sbjct: 567 KDDDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 603
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Z2G6|SE1L1_MOUSE Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 20/218 (9%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 442
Query: 169 PAAQPA-------------NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215
P Q N + A+K +A+ G V Q QL + G GV + ++A
Sbjct: 443 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 502
Query: 216 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 275
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 503 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 562
Query: 276 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 312
+ + AVV YL LA + E A + IL Q AT
Sbjct: 563 KDEDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 599
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mus musculus (taxid: 10090) |
| >sp|Q9ZG88|PODJ_CAUCR Localization factor PodJL OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=podJ PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 169 PAAQPANAEEA----------------VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFN 211
PAA P N +A V+LL +A+ G+ AQ+ L+ G+ GV +
Sbjct: 718 PAAPPTNEAKALFEDAVRKIESGDRSGVELLKRAANGGYPAAQFYLSKMYEGGKNGVKVD 777
Query: 212 LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL--- 268
+ EA RW RAA GG RAM+N +L Y GEG P + A W ++AAD G +Q
Sbjct: 778 MAEARRWSERAANGGDPRAMHNLALYYFKGEGGPRNSTTAASWFRKAADMGLVDSQFNLA 837
Query: 269 ---EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR---DRAML 319
E GLG+ +A + +A RAG++ A + QL+A ++ DR+ L
Sbjct: 838 QLYESGLGVSQ--NPAEAYKWYVIAGRAGDSTARGRATALRSQLTAEAQQTADRSAL 892
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PodJL provides the positional information for the localization of several polar organelles (pili, adhesive holdfast and chemotactic apparatus) by recruiting structural (CpaE) and regulatory (PleC) proteins to a specific cell pole. Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650) |
| >sp|B8GXA0|PODJ_CAUCN Localization factor PodJL OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=podJ PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 169 PAAQPANAEEA----------------VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFN 211
PAA P N +A V+LL +A+ G+ AQ+ L+ G+ GV +
Sbjct: 718 PAAPPTNEAKALFEDAVRKIESGDRSGVELLKRAANGGYPAAQFYLSKMYEGGKNGVKVD 777
Query: 212 LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL--- 268
+ EA RW RAA GG RAM+N +L Y GEG P + A W ++AAD G +Q
Sbjct: 778 MAEARRWSERAANGGDPRAMHNLALYYFKGEGGPRNSTTAASWFRKAADMGLVDSQFNLA 837
Query: 269 ---EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR---DRAML 319
E GLG+ +A + +A RAG++ A + QL+A ++ DR+ L
Sbjct: 838 QLYESGLGVSQ--NPAEAYKWYVIAGRAGDSTARGRATALRSQLTAEAQQTADRSAL 892
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PodJL provides the positional information for the localization of several polar organelles (pili, adhesive holdfast and chemotactic apparatus) by recruiting structural (CpaE) and regulatory (PleC) proteins to a specific cell pole. Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050) |
| >sp|P77234|YBEQ_ECOLI Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD--KKEAAISL--YRQAAVLGDPA 170
RG N +A+ + A G + A + G MY + K+ A++ Y+QAA+ G
Sbjct: 110 RGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSD 169
Query: 171 AQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217
AQ N A +++ G+ AQ+Q+A + G GVD + ++A
Sbjct: 170 AQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMY 229
Query: 218 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA 266
WYL+AA G V A N Y G+G+ ++ A +W +AA+C A
Sbjct: 230 WYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDATA 278
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|Q3V172|SE1L2_MOUSE Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 18/211 (8%)
Query: 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD------------------KKEAA 156
+G+ ++ KAL FLK A GS AM G MY+E + K A
Sbjct: 312 KGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNA 371
Query: 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216
I L+ + P N EA+K +A+ G AQ+QL + G GV + + A
Sbjct: 372 IGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAF 431
Query: 217 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 276
+++ A++ G A+Y + Y+ G G+ S R A + K + GH + +
Sbjct: 432 KYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYK 491
Query: 277 EGEMMKAVVYLELATRAGETAADHVKNVILQ 307
+G++ +++ L G A IL+
Sbjct: 492 DGDIDSSLIQYALLAEMGYEVAQSNSAFILE 522
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Mus musculus (taxid: 10090) |
| >sp|Q5TEA6|SE1L2_HUMAN Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 18/220 (8%)
Query: 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD------------------KKEAA 156
+G+ ++ KAL FLK A GS AM G MY E + K A
Sbjct: 312 KGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNA 371
Query: 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216
I L+ + P N EA+K +A+ G AQ+QL + G G+ + + A
Sbjct: 372 IGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAF 431
Query: 217 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 276
+++ A++ G A+Y + Y+ G G+ S R A + K + GH + +
Sbjct: 432 KYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYK 491
Query: 277 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 316
+G++ ++V L G A IL+ A ++
Sbjct: 492 DGDIDSSLVQYALLAEMGYEVAQSNSAFILESKKANILEK 531
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| 225470583 | 335 | PREDICTED: F-box protein At1g70590 [Viti | 0.966 | 0.955 | 0.690 | 1e-128 | |
| 255574005 | 329 | conserved hypothetical protein [Ricinus | 0.957 | 0.963 | 0.685 | 1e-126 | |
| 224110896 | 334 | predicted protein [Populus trichocarpa] | 0.966 | 0.958 | 0.683 | 1e-124 | |
| 224102439 | 317 | predicted protein [Populus trichocarpa] | 0.921 | 0.962 | 0.634 | 1e-115 | |
| 449450432 | 368 | PREDICTED: F-box protein At1g70590-like | 1.0 | 0.899 | 0.600 | 1e-114 | |
| 297838865 | 345 | F-box family protein [Arabidopsis lyrata | 0.993 | 0.953 | 0.629 | 1e-111 | |
| 356497357 | 327 | PREDICTED: F-box protein At1g70590-like | 0.945 | 0.957 | 0.616 | 1e-107 | |
| 18409624 | 351 | F-box protein [Arabidopsis thaliana] gi| | 0.990 | 0.934 | 0.594 | 1e-106 | |
| 356501969 | 327 | PREDICTED: F-box protein At1g70590-like | 0.815 | 0.825 | 0.678 | 1e-103 | |
| 147779938 | 943 | hypothetical protein VITISV_023688 [Viti | 0.703 | 0.247 | 0.655 | 7e-97 |
| >gi|225470583|ref|XP_002273705.1| PREDICTED: F-box protein At1g70590 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/346 (69%), Positives = 270/346 (78%), Gaps = 26/346 (7%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSI---KSTE 57
MKQRTWP +S GSRFTAL+ + S +K + RS+ S +I S E
Sbjct: 1 MKQRTWPVKSEGSRFTALRL-----------YSGSGKKEETRLRSKRYSSITIPFRSSRE 49
Query: 58 GHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG- 116
DF+ LP D+L KIAA+FTLP L+ ASLVC+SW D+LRPLREAM+LL+WGKRFKHG G
Sbjct: 50 ETDFSKLPDDILQKIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGG 109
Query: 117 VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ---- 172
VR N+ KALDSFLKGAARGSTLAMVDAGL+YWEM KKE +I+LYR+AA LGDP AQ
Sbjct: 110 VRPNIQKALDSFLKGAARGSTLAMVDAGLIYWEMGKKEESIALYRKAAELGDPTAQCNLG 169
Query: 173 -------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225
P EEA K LY +S AG+VRAQYQLALCLHRGRG+D NL EAARWYL+AAEG
Sbjct: 170 ISYLHSEPPKREEAAKWLYLSSNAGYVRAQYQLALCLHRGRGMDRNLPEAARWYLKAAEG 229
Query: 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVV 285
GYVRAMYN SLCYS+GEGL SHRQAR+WMKRAAD GH KAQ EHGLGLF+EGEMMKAVV
Sbjct: 230 GYVRAMYNVSLCYSYGEGLVHSHRQARRWMKRAADRGHSKAQFEHGLGLFSEGEMMKAVV 289
Query: 286 YLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331
YLELATRAGETAA HVKNVILQQLS TSRDRAML+ D+WRA+P+ H
Sbjct: 290 YLELATRAGETAAAHVKNVILQQLSVTSRDRAMLLADNWRALPTSH 335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574005|ref|XP_002527920.1| conserved hypothetical protein [Ricinus communis] gi|223532695|gb|EEF34477.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/343 (68%), Positives = 262/343 (76%), Gaps = 26/343 (7%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MKQRTWP RS GS+F +L P T +++ I +S S S +G D
Sbjct: 1 MKQRTWPSRSDGSKFKSLPLPYT-----------ISKREIIPSKSVISFS---VPKDGRD 46
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRK 119
F++LPFD+L KIAASFTLP L+ ASLVC+SW D LRPLREAMV L+WGKRFKHGRG VR
Sbjct: 47 FSTLPFDILIKIAASFTLPNLQTASLVCRSWRDGLRPLREAMVFLKWGKRFKHGRGGVRP 106
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ------- 172
NL KALDSFLKG A GS LAMVDAGL+YWEM K+ AI+LY +AA LGDPA Q
Sbjct: 107 NLQKALDSFLKGVALGSPLAMVDAGLVYWEMGFKDKAIALYLKAAELGDPAGQCNLGIYY 166
Query: 173 ----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 228
P +EA+K L QAS AGHVRAQYQLALCLH+GRGVD NLQEAA+WYL+AA GGYV
Sbjct: 167 VQVEPPKPKEAIKWLLQASNAGHVRAQYQLALCLHQGRGVDHNLQEAAKWYLKAAAGGYV 226
Query: 229 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 288
RAMYN +LCYS GEGL S+RQARKWMKRAAD GH KAQ EHGLGLF+EGEMMKAVVYLE
Sbjct: 227 RAMYNVALCYSVGEGLAQSYRQARKWMKRAADRGHSKAQFEHGLGLFSEGEMMKAVVYLE 286
Query: 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331
LATRAGETAA HVKNVILQQLS TSRDR ML+ DSWRA+PS H
Sbjct: 287 LATRAGETAAAHVKNVILQQLSTTSRDRVMLLADSWRALPSSH 329
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110896|ref|XP_002315673.1| predicted protein [Populus trichocarpa] gi|222864713|gb|EEF01844.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/341 (68%), Positives = 267/341 (78%), Gaps = 21/341 (6%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MKQ TWP RS GSRF +L PI + + S K+ K S SR I+S++G D
Sbjct: 1 MKQSTWPGRSDGSRFKSL--PI------KHQFHQSEFKSTSKFWSASLASRQIRSSDG-D 51
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRK 119
F+ LPFD+L KIAASFTLP L+AASLVCKSW++ LRPLREAM+ L+WGKRFKHGRG VR
Sbjct: 52 FSKLPFDILTKIAASFTLPNLQAASLVCKSWSEGLRPLREAMLFLKWGKRFKHGRGGVRP 111
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ------- 172
NL KAL+SFLKGAARGSTLAMVDAGL+YWE+ K+ AI+LY +AA LGD + Q
Sbjct: 112 NLSKALESFLKGAARGSTLAMVDAGLLYWEIGDKDKAIALYEKAAKLGDRSGQCNLGLAY 171
Query: 173 ----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 228
P+ +EAVK L+QAS +GHVRAQYQ ALCLH+G GV+ NLQEAARWYL+AAEGGYV
Sbjct: 172 LQAEPSKRKEAVKWLFQASKSGHVRAQYQFALCLHQGSGVNCNLQEAARWYLKAAEGGYV 231
Query: 229 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 288
RAMYN +LCYS GEGL SHR ARKWMKRAAD GH KAQ EHGLGLF+EGE +KAVVYLE
Sbjct: 232 RAMYNVALCYSVGEGLAQSHRLARKWMKRAADRGHSKAQFEHGLGLFSEGEQLKAVVYLE 291
Query: 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329
LATRAGETAA HVKNVILQQLSATSRDR M + D+WRA+PS
Sbjct: 292 LATRAGETAAAHVKNVILQQLSATSRDRVMNLADNWRALPS 332
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102439|ref|XP_002312677.1| predicted protein [Populus trichocarpa] gi|222852497|gb|EEE90044.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/342 (63%), Positives = 258/342 (75%), Gaps = 37/342 (10%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MKQ+TWP R R + +F ++ + + R ++S++G D
Sbjct: 1 MKQKTWPGRQY--RQSTFKFWLSSEAD----------------------FRQLRSSDG-D 35
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRK 119
F++LP D+L KIAASFTLP L+ ASLVCKSW++ LRPLREA++ L+WGKRFKHGR GVR
Sbjct: 36 FSTLPSDILTKIAASFTLPHLQTASLVCKSWSEGLRPLREALLFLKWGKRFKHGRGGVRP 95
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ------- 172
NLDKALDSFLKGA RGSTLAMVDAGL+YWE+ KK+ AI+LY++AAVLGDP+ Q
Sbjct: 96 NLDKALDSFLKGAVRGSTLAMVDAGLLYWEIGKKDKAIALYKKAAVLGDPSGQCNLGLSY 155
Query: 173 ----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 228
P+ +EAVK L+QAS +GHVRAQYQLALCLH+G G D +L EAARWYL+AAEGGYV
Sbjct: 156 LQAEPSKRKEAVKWLFQASKSGHVRAQYQLALCLHQGCGFDRHLHEAARWYLKAAEGGYV 215
Query: 229 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 288
RAMY +LCYS GEGL SHRQARKWMKRAAD GH AQ EHGLGLF+EGE +KAVVYLE
Sbjct: 216 RAMYRVALCYSVGEGLAQSHRQARKWMKRAADRGHSNAQYEHGLGLFSEGEKLKAVVYLE 275
Query: 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330
LAT AGETAA HVKNVILQQL ATSRD M + ++WRA+PSL
Sbjct: 276 LATHAGETAAVHVKNVILQQLPATSRDHVMNLANNWRALPSL 317
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450432|ref|XP_004142966.1| PREDICTED: F-box protein At1g70590-like isoform 1 [Cucumis sativus] gi|449500305|ref|XP_004161061.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At1g70590-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/368 (60%), Positives = 257/368 (69%), Gaps = 37/368 (10%)
Query: 1 MKQRTWPDRSTGSRFTALQFP------ITEKDNRRPELTA---SARKARIKRRSRFSCSR 51
M QRTWPDRS S F++ D+ L A S + + F+ +
Sbjct: 1 MWQRTWPDRSDASPFSSFSLSKLKAKSAIHMDDHHHNLDAYHTSRHTLSTSKSTNFTPTV 60
Query: 52 SI----------------KSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDAL 95
S HDF++LP+DVL KIAASF LP LRAAS VCK+W DA
Sbjct: 61 HPSPSTSSSSQTPFWVRPSSLPSHDFSALPYDVLIKIAASFNLPNLRAASFVCKAWFDAF 120
Query: 96 RPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKE 154
RPLREAM+ LRWGKRFKHGRG VR N DKAL+SFLKGAARGSTLAMVDAGL+YWEM K
Sbjct: 121 RPLREAMLFLRWGKRFKHGRGGVRPNSDKALNSFLKGAARGSTLAMVDAGLLYWEMGNKN 180
Query: 155 AAISLYRQAAVLGDPAAQ-----------PANAEEAVKLLYQASIAGHVRAQYQLALCLH 203
AI+LY++AA LGDP+A+ P N EAVK L QAS+ G++RAQYQLALCL
Sbjct: 181 DAIALYQKAADLGDPSAKCNLGISFLHAKPPNPTEAVKWLRQASVVGNIRAQYQLALCLQ 240
Query: 204 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263
+G GVD N+QEAARW+++AAEGGYVRAMYN SLCYS GEGL +H+QA+KWMKRAAD GH
Sbjct: 241 QGHGVDRNVQEAARWFIKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGH 300
Query: 264 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 323
KAQ EHGL LF+E +MMKAVVYLELATR+GE AA HVKNVILQQLS +SRDR M V D+
Sbjct: 301 CKAQFEHGLHLFSERDMMKAVVYLELATRSGERAAGHVKNVILQQLSQSSRDRVMSVADN 360
Query: 324 WRAMPSLH 331
WR +PS H
Sbjct: 361 WRPLPSSH 368
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838865|ref|XP_002887314.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297333155|gb|EFH63573.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/343 (62%), Positives = 257/343 (74%), Gaps = 14/343 (4%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASAR-KARIKRRSRFSCSRSIKSTE-G 58
MKQRTWP RS GSRFT+L F ++ +R ++ R A+ SR S S S S E G
Sbjct: 1 MKQRTWPCRSEGSRFTSLSFLKPQEKEKRTRFSSINRATAKSSTSSRSSSSSSPLSNEIG 60
Query: 59 HDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-V 117
DF+ LPFD+L KIAA F+ P L+AAS VCKSW DAL+PLRE+M+LLRWGK+FKHGRG V
Sbjct: 61 GDFSMLPFDILMKIAAPFSHPNLQAASSVCKSWRDALKPLRESMLLLRWGKKFKHGRGGV 120
Query: 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ----- 172
R NLDKALDSFLKGAARGSTLAMVDAGL+YWE +KE A+SLYR+AA LGD Q
Sbjct: 121 RANLDKALDSFLKGAARGSTLAMVDAGLVYWETGEKEKAMSLYRRAAELGDAVGQCNLGI 180
Query: 173 ------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226
P+N +EA+K L Q++ G+VRAQYQLALCLH+GR V NL EA++WYL+AAEGG
Sbjct: 181 CYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHQGRVVKTNLLEASKWYLKAAEGG 240
Query: 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVY 286
YVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EG M+K+V+Y
Sbjct: 241 YVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGAMLKSVLY 300
Query: 287 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329
LELA R GE+AA H+K VI QQLSATSR + +WR +P+
Sbjct: 301 LELAERGGESAATHIKEVIHQQLSATSRGHVINQASNWRPLPA 343
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497357|ref|XP_003517527.1| PREDICTED: F-box protein At1g70590-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/342 (61%), Positives = 250/342 (73%), Gaps = 29/342 (8%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MK RTWP F++L + + R E +A AR R+ R + G +
Sbjct: 1 MKHRTWP-----RAFSSLPY------SNRSEFSA-ARSTRLCARPPPPSPPGV----GGE 44
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRK 119
F+SLP+DVL KIAASF P LRAASLVC++W +ALRPLREAMVLLRWGKRFKHGR GVR
Sbjct: 45 FSSLPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMVLLRWGKRFKHGRRGVRP 104
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ------- 172
N+DKALDSF K A RGS LAMVDAGL+YWE +K A+ LY +AA LG+P+AQ
Sbjct: 105 NVDKALDSFTKAAVRGSALAMVDAGLIYWERGEKPKAMELYLKAAELGNPSAQCNLGLSY 164
Query: 173 ----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGGY 227
P N E+AVK L +AS+ G+VRAQYQLALCLHR G V NL+EAA+WY++AAEGGY
Sbjct: 165 LQAEPPNTEKAVKWLRKASVCGNVRAQYQLALCLHRSGGRVRSNLKEAAKWYMKAAEGGY 224
Query: 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYL 287
VRAMYN SLC+SFGEGL +H+ ARKWMKRAAD GH KAQ EHGL LF+EG+MMKAVVYL
Sbjct: 225 VRAMYNISLCFSFGEGLASNHQLARKWMKRAADRGHSKAQFEHGLALFSEGDMMKAVVYL 284
Query: 288 ELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329
ELATRAGE A HVKN +L +LS+ SRD AM + +SWRA+PS
Sbjct: 285 ELATRAGEKGAAHVKNAVLHRLSSVSRDHAMHLANSWRALPS 326
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18409624|ref|NP_564992.1| F-box protein [Arabidopsis thaliana] gi|75165183|sp|Q94C27.1|FB84_ARATH RecName: Full=F-box protein At1g70590 gi|14335050|gb|AAK59789.1| At1g70590/F5A18_23 [Arabidopsis thaliana] gi|27363348|gb|AAO11593.1| At1g70590/F5A18_23 [Arabidopsis thaliana] gi|332196965|gb|AEE35086.1| F-box protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/348 (59%), Positives = 252/348 (72%), Gaps = 20/348 (5%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELT----ASARKARIKRRSRFSCSRSIKST 56
MKQRTWP RS GSRF++L F ++R ++ A+A+ R S S S S
Sbjct: 1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60
Query: 57 EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
E DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61 EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120
Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ--- 172
VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE +KE A++LYR+A+ LGD Q
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180
Query: 173 --------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224
P+N +EA+K L Q++ G+VRAQYQLALCLH GR V NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240
Query: 225 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 284
GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300
Query: 285 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 328
+YLELA R GE AA VK V+ QQLSAT + A+ ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501969|ref|XP_003519795.1| PREDICTED: F-box protein At1g70590-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/283 (67%), Positives = 225/283 (79%), Gaps = 13/283 (4%)
Query: 60 DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHG-RGVR 118
DF++LP+DVL KIAASF P LRAASLVC++W +ALRPLREAM LL WGKRFKHG RGV
Sbjct: 44 DFSALPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMALLLWGKRFKHGHRGVG 103
Query: 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ------ 172
N D+ALDSF+K AARGS LAMVDAGL+YWE +K A+ Y +AA LG+P+AQ
Sbjct: 104 PNPDRALDSFIKAAARGSALAMVDAGLIYWERGEKPKAMEFYHKAAELGNPSAQCNLGLS 163
Query: 173 -----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGG 226
P N E AVK L++AS+ G+VRAQYQLALCLHRG G V NL+EAA+WY++AAEGG
Sbjct: 164 YLQAEPPNTELAVKWLHKASVCGNVRAQYQLALCLHRGGGRVRSNLKEAAKWYMKAAEGG 223
Query: 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVY 286
YVRAMYN SLC+SFGEGL +H+ ARKWMKRAAD GH KAQ EHGL LF+EG+MMKAVVY
Sbjct: 224 YVRAMYNISLCFSFGEGLTRNHQLARKWMKRAADRGHSKAQFEHGLALFSEGDMMKAVVY 283
Query: 287 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329
LELATRAGE A HVKN +L +LS+ SRD AM + +SWRA+PS
Sbjct: 284 LELATRAGEKGAAHVKNAVLHRLSSASRDHAMHLANSWRALPS 326
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147779938|emb|CAN62303.1| hypothetical protein VITISV_023688 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 188/287 (65%), Positives = 207/287 (72%), Gaps = 54/287 (18%)
Query: 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFL 129
KIAA+FTLP L+ ASLVC+SW D+LRPLREAM+LL+WGKRFKHG G VR N+ KALDSFL
Sbjct: 46 KIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGGVRPNIQKALDSFL 105
Query: 130 KGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ-----------PANAEE 178
KGAARGSTLAMVDAGL+YWEM KKE +++LYR+AA LGDP AQ P EE
Sbjct: 106 KGAARGSTLAMVDAGLIYWEMGKKEESVALYRKAAELGDPTAQCNLGISYLHSEPPKREE 165
Query: 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA----------------------- 215
A K LY +S AG+VRAQYQLALCLHRGRG+D NL EA
Sbjct: 166 AAKWLYLSSNAGYVRAQYQLALCLHRGRGMDRNLPEAPTIVKGFREWEYEMWGDNHCTKP 225
Query: 216 -------------------ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 256
ARWYL+AAEGGYVRAMYN SLCYS+GEGL SHRQAR+WMK
Sbjct: 226 CSPFVDAIHLVLYLSSPRQARWYLKAAEGGYVRAMYNVSLCYSYGEGLVHSHRQARRWMK 285
Query: 257 RAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303
RAAD GH KAQ EHGLGLF+EGEMMKAVVYLELATRAGETAA HVKN
Sbjct: 286 RAADRGHSKAQFEHGLGLFSEGEMMKAVVYLELATRAGETAAAHVKN 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| TAIR|locus:2026774 | 351 | AT1G70590 "AT1G70590" [Arabido | 0.990 | 0.934 | 0.586 | 6.4e-99 | |
| UNIPROTKB|Q748V7 | 245 | GSU2894 "SEL1 repeat-containin | 0.271 | 0.367 | 0.455 | 3.2e-17 | |
| TIGR_CMR|GSU_2894 | 245 | GSU_2894 "conserved hypothetic | 0.271 | 0.367 | 0.455 | 3.2e-17 | |
| UNIPROTKB|Q481Z1 | 235 | CPS_2411 "Conserved domain pro | 0.344 | 0.485 | 0.350 | 1.1e-13 | |
| TIGR_CMR|CPS_2411 | 235 | CPS_2411 "conserved domain pro | 0.344 | 0.485 | 0.350 | 1.1e-13 | |
| UNIPROTKB|Q0C4E8 | 1238 | HNE_0666 "Putative localizatio | 0.456 | 0.121 | 0.335 | 6.3e-13 | |
| UNIPROTKB|Q74B15 | 252 | GSU2447 "TPR-related repeat pr | 0.338 | 0.444 | 0.339 | 4.7e-10 | |
| TIGR_CMR|GSU_2447 | 252 | GSU_2447 "conserved hypothetic | 0.338 | 0.444 | 0.339 | 4.7e-10 | |
| UNIPROTKB|Q60BR0 | 202 | MCA0405 "Putative uncharacteri | 0.468 | 0.767 | 0.267 | 8.9e-09 | |
| UNIPROTKB|E1C6X2 | 791 | SEL1L "Uncharacterized protein | 0.477 | 0.199 | 0.283 | 5.2e-08 |
| TAIR|locus:2026774 AT1G70590 "AT1G70590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 204/348 (58%), Positives = 247/348 (70%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----T 56
MKQRTWP RS GSRF++L F ++R ++ S S S S
Sbjct: 1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60
Query: 57 EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
E DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61 EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120
Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ--- 172
VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE +KE A++LYR+A+ LGD Q
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180
Query: 173 --------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224
P+N +EA+K L Q++ G+VRAQYQLALCLH GR V NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240
Query: 225 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 284
GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300
Query: 285 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 328
+YLELA R GE AA VK V+ QQLSAT + A+ ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348
|
|
| UNIPROTKB|Q748V7 GSU2894 "SEL1 repeat-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 239
VK L QA+ G++RAQY++A GR + ++ EAA+WYLRAAE G+ RA Y +L +
Sbjct: 150 VKWLQQAAKMGNIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFL 209
Query: 240 FGEGLPLSHRQARKWMKRAADCGHGKAQLE 269
GEG+ +A KW+++AA+ GH KAQ++
Sbjct: 210 KGEGVRQDRAEAVKWLRKAAEGGHTKAQMD 239
|
|
| TIGR_CMR|GSU_2894 GSU_2894 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 239
VK L QA+ G++RAQY++A GR + ++ EAA+WYLRAAE G+ RA Y +L +
Sbjct: 150 VKWLQQAAKMGNIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFL 209
Query: 240 FGEGLPLSHRQARKWMKRAADCGHGKAQLE 269
GEG+ +A KW+++AA+ GH KAQ++
Sbjct: 210 KGEGVRQDRAEAVKWLRKAAEGGHTKAQMD 239
|
|
| UNIPROTKB|Q481Z1 CPS_2411 "Conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 41/117 (35%), Positives = 67/117 (57%)
Query: 167 GDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226
G AQ N +A++ +A+ G+ R+QY LAL + G+GV + ++A +WY +AAE G
Sbjct: 99 GRGVAQDYN--QAIEWHTKAAEQGNPRSQYHLALIYYNGKGVTQDYKQALKWYSKAAEDG 156
Query: 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKA 283
Y+ + Y G+G+ ++QA W +AA+ G KAQ GL L+ +G+ + A
Sbjct: 157 NAGVQYSLGVMYENGQGVAQDYKQAFDWYSKAAEQGDAKAQYNLGL-LYADGKGITA 212
|
|
| TIGR_CMR|CPS_2411 CPS_2411 "conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 41/117 (35%), Positives = 67/117 (57%)
Query: 167 GDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226
G AQ N +A++ +A+ G+ R+QY LAL + G+GV + ++A +WY +AAE G
Sbjct: 99 GRGVAQDYN--QAIEWHTKAAEQGNPRSQYHLALIYYNGKGVTQDYKQALKWYSKAAEDG 156
Query: 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKA 283
Y+ + Y G+G+ ++QA W +AA+ G KAQ GL L+ +G+ + A
Sbjct: 157 NAGVQYSLGVMYENGQGVAQDYKQAFDWYSKAAEQGDAKAQYNLGL-LYADGKGITA 212
|
|
| UNIPROTKB|Q0C4E8 HNE_0666 "Putative localization factor protein PodJ" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 54/161 (33%), Positives = 88/161 (54%)
Query: 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSL 236
+ A+ LL +A++ G AQY L +G GVD ++ +A +AAE G+V AMY+ +L
Sbjct: 1000 DSAIPLLRRAALKGAAPAQYDLGKLYEQGIGVDQDMIQARSLISKAAEAGHVGAMYDLAL 1059
Query: 237 CYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-LFTEG-----EMMKAVVYLELA 290
+ GEG L A +W ++AAD HG ++ LG +F EG ++ +A+ + ELA
Sbjct: 1060 FMAEGEGGELDDLGAVEWFRKAAD--HGFLDAQYNLGVMFAEGIGAEQDLAEALYWFELA 1117
Query: 291 TRAGETAAD-HVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330
+R G++ A V+++ + T R+ M D W PS+
Sbjct: 1118 SRQGDSGATLEVRSLSSRLPPETVRE-VMETADLWSETPSI 1157
|
|
| UNIPROTKB|Q74B15 GSU2447 "TPR-related repeat protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 156 AISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215
A + +R A + D + P EA + + A+ GHVRAQY L H G GV + A
Sbjct: 47 AKAAFRLALMHLDGSGAPRKPTEAARYMKMAAERGHVRAQYYLGTFYHEGTGVKRDTSAA 106
Query: 216 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 267
ARW +AA GG A Y + G+G+P+ +A +W+ +A+ G+ A+
Sbjct: 107 ARWIGKAAAGGDAEAQYAYGMVLLSGDGVPVDKVRAIEWLGKASRQGNEGAR 158
|
|
| TIGR_CMR|GSU_2447 GSU_2447 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 156 AISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215
A + +R A + D + P EA + + A+ GHVRAQY L H G GV + A
Sbjct: 47 AKAAFRLALMHLDGSGAPRKPTEAARYMKMAAERGHVRAQYYLGTFYHEGTGVKRDTSAA 106
Query: 216 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 267
ARW +AA GG A Y + G+G+P+ +A +W+ +A+ G+ A+
Sbjct: 107 ARWIGKAAAGGDAEAQYAYGMVLLSGDGVPVDKVRAIEWLGKASRQGNEGAR 158
|
|
| UNIPROTKB|Q60BR0 MCA0405 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 144 (55.7 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 43/161 (26%), Positives = 72/161 (44%)
Query: 170 AAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR 229
A + + A++ QA+ G AQ L +G GV+ + A RWY +AAE G
Sbjct: 3 AVERGDYPAALREFKQAAERGESAAQVNLGNLYMKGLGVEQDYAAAERWYRQAAEHGDPM 62
Query: 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGE-----MMKAV 284
+ Y +G G+ + +A +W +AA+ G A G ++ EGE +KA
Sbjct: 63 GQSKLGILYYYGLGVDKNTDEAARWFVKAAEQGEPGAAAVLG-SMYAEGEGVIRDNVKAY 121
Query: 285 VYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325
+ LA G+T A + ++ +++ A+ V WR
Sbjct: 122 YWYTLAADGGQTDALQARATLVDEMTPGEIAEALQRVGEWR 162
|
|
| UNIPROTKB|E1C6X2 SEL1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 49/173 (28%), Positives = 82/173 (47%)
Query: 154 EAAISLYRQAAVLGDPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLAL 200
E A+ +++AA +G+P Q P N E A+K +A+ G V Q QL
Sbjct: 430 ETALQYFKKAADMGNPVGQSGLGMAYLYGRGVPVNYELALKYFQKAAEQGWVDGQLQLGS 489
Query: 201 CLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260
+ G GV + ++A +++ A++GG++ A YN + ++ G G+ S A + K +
Sbjct: 490 MYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHATGTGVMRSCHTAVELFKNVCE 549
Query: 261 CGHGKAQLEHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 312
G +L + +G+ AVV YL LA + E A + IL Q A+
Sbjct: 550 RGRWSERLMTAYNSYKDGDSNSAVVQYLLLAEQGYEVAQSNAA-FILDQKEAS 601
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94C27 | FB84_ARATH | No assigned EC number | 0.5948 | 0.9909 | 0.9344 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 331 | |||
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 9e-22 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-18 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 2e-14 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-08 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 2e-06 | |
| pfam08238 | 38 | pfam08238, Sel1, Sel1 repeat | 2e-05 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 8e-05 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 7e-04 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 0.002 | |
| pfam08238 | 38 | pfam08238, Sel1, Sel1 repeat | 0.003 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 0.004 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 9e-22
Identities = 57/202 (28%), Positives = 82/202 (40%), Gaps = 24/202 (11%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY----WEMDKKEAAISLYRQAAVLGDP 169
G + KAL S+ K A G A+ G MY K A YR AA G
Sbjct: 50 GSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA 109
Query: 170 AAQ-------------PANAEEAVKLLYQASIAGH---VRAQYQLALCLHRG---RGVDF 210
A P + +A+K +A+ G+ A Y+L L G V +
Sbjct: 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169
Query: 211 NLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEH 270
+ ++A Y +AAE G A Y G G+P ++A +W K+AA+ G G A
Sbjct: 170 DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNL 229
Query: 271 GLGLFTEGEMMKAVVYLELATR 292
GL ++ GE +K +L A
Sbjct: 230 GL-MYLNGEGVKKAAFLTAAKE 250
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 1e-18
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK----KEAAISLYRQA 163
G+ + G+GV ++ KA D + AA G A+ + GLMY A+ Y +A
Sbjct: 80 GQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKA 139
Query: 164 AVLGDPAAQ-------------------PANAEEAVKLLYQASIAGHVRAQYQLALCLHR 204
A LG+ A + ++A+ L +A+ G+ AQ L +
Sbjct: 140 AKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEK 199
Query: 205 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSH----------RQARKW 254
G GV +L++A RWY +AAE G A YN L Y GEG+ + +QA +W
Sbjct: 200 GLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEW 259
Query: 255 MKRAADCGHGKAQ 267
+++A + G A
Sbjct: 260 LQKACELGFDNAC 272
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 2e-14
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Query: 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213
A + A + G +A P + +A+K +A+ G A L G+GV +
Sbjct: 35 LMAAVALKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKT 94
Query: 214 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL-EHGL 272
+AA WY AA G A++N L Y+ G G+PL +A K+ ++AA G+ +A L + L
Sbjct: 95 KAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL 154
Query: 273 GL-FTEGEMMKAVVYLELATRAGETAADH 300
GL + G AV Y + A
Sbjct: 155 GLAYLSGLQALAVAYDDKKALYLYRKAAE 183
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 1e-08
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 4/140 (2%)
Query: 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222
+ AA+ KLL + + AL G + +A + Y +A
Sbjct: 8 SGKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEKA 67
Query: 223 AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL----GLFTEG 278
AE G A+ Y G+G+ +A W + AA G +A GL G
Sbjct: 68 AELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPL 127
Query: 279 EMMKAVVYLELATRAGETAA 298
+++KA+ Y E A + G A
Sbjct: 128 DLVKALKYYEKAAKLGNVEA 147
|
Length = 292 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227
AQY L G GV +L++A +Y +AAE G
Sbjct: 1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 192 VRAQYQLA--LCLHRGRGVDFNLQEAARWYLRAAEGGY 227
AQY L G GV + ++A WY +AAE G
Sbjct: 1 AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38
|
This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 8e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263
A YN Y +G G+P +A ++ K+AA+ G+
Sbjct: 1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
LP D+L +I + L SLV K W +
Sbjct: 3 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
LP ++L +I + L V + W +
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLID 33
|
Length = 41 |
| >gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (80), Expect = 0.003
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 228 VRAMYN--TSLCYSFGEGLPLSHRQARKWMKRAADCGH 263
A YN Y G G+P + +A +W ++AA+ G+
Sbjct: 1 AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38
|
This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDA 94
+ LP ++L +I + L +LVC+ W +
Sbjct: 1 LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34
|
This is an F-box-like family. Length = 47 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.9 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.85 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.76 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.73 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.71 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.7 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.7 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.66 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.62 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.6 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.59 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.59 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.58 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.53 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.52 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.37 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.35 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.32 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.3 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.27 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.27 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.23 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.2 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.2 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.17 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.11 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.08 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.06 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.05 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.04 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.03 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.98 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.93 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.93 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.91 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.9 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.84 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.83 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.79 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.76 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.7 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.7 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.69 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.57 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.57 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.45 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.41 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.4 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.4 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.37 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.32 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.32 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.31 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.31 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.3 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.26 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.18 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 98.16 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 98.14 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.14 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.12 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.08 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 98.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.02 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 98.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.0 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.0 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.96 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.9 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.85 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.83 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.74 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.73 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.65 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.6 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.45 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.39 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.35 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.34 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.3 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.28 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.26 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.09 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.09 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.97 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.94 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.86 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.71 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.58 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.55 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.42 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.26 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.26 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.17 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.96 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.83 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.52 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 95.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.43 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.41 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.31 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.93 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.9 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.72 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.59 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.37 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.28 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.14 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 93.84 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.84 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.82 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.61 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.53 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.11 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.06 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.94 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.89 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 92.87 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.63 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.67 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.63 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.44 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.2 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.61 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.44 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.28 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.91 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 89.73 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 89.34 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 89.16 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 88.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.62 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 88.58 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 88.48 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 88.27 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 87.95 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 87.86 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 87.75 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.13 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 86.72 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 86.28 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 85.7 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.61 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 85.05 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 84.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 84.56 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 84.42 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.74 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 83.35 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 82.54 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.49 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 82.25 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 82.08 | |
| cd02681 | 76 | MIT_calpain7_1 MIT: domain contained within Microt | 81.92 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.73 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 81.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 81.23 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.94 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 80.44 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.39 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 80.28 |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=182.76 Aligned_cols=207 Identities=28% Similarity=0.370 Sum_probs=185.7
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~ 155 (331)
...+++..+ ..+...++..+++.+++.+|.+|..|.||.+|..+|+.||+++++.|++.++++||.+|..+.
T Consensus 52 ~~~~~~~~a----~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~---- 123 (292)
T COG0790 52 AYPPDYAKA----LKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGR---- 123 (292)
T ss_pred cccccHHHH----HHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCC----
Confidence 345666677 566667777788999999999999999999999999999999999999999999999998873
Q ss_pred HHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHH---HHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHCCCHH
Q 020091 156 AISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRA---QYQLALCLHRG---RGVDFNLQEAARWYLRAAEGGYVR 229 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a---~~~lg~~y~~G---~g~~~d~~~A~~~~~~A~~~~~~~ 229 (331)
++.+|+.+|..||++|++.|++.+ ++.||.+|..| .++..+...|+.+|.+|++.++..
T Consensus 124 ---------------gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~ 188 (292)
T COG0790 124 ---------------GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPD 188 (292)
T ss_pred ---------------CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHH
Confidence 256688999999999999999999 99999999999 788888889999999999999999
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------------CHHHHHHHHHHHHHcC
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEG---------------EMMKAVVYLELATRAG 294 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~---------------~~~~A~~~~~~A~~~~ 294 (331)
+++.||.+|..|.|+++|..+|+.||.+|++.|+..+++.++ +++..| +...|..++.+++..+
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999 566544 8999999999999999
Q ss_pred CHHHHHHHHHHH
Q 020091 295 ETAADHVKNVIL 306 (331)
Q Consensus 295 ~~~a~~~l~~~~ 306 (331)
...++..+..+.
T Consensus 268 ~~~~~~~~~~~~ 279 (292)
T COG0790 268 FDNACEALRALK 279 (292)
T ss_pred ChhHHHHHHHHH
Confidence 988887766433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=189.11 Aligned_cols=237 Identities=19% Similarity=0.130 Sum_probs=145.7
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~ 155 (331)
.|.+.+|...|.+.++..+ .-+.++.+||-++.. .|+...|+++|++|+..+ .++|++|||++|.+.+.+++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp--~fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQP--CFAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHHhhCC--ceeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 4666666666666555544 346666667766666 667777777777776664 66677777777766666667
Q ss_pred HHHHHHHHHHcCCCCC---------------------------------------------CccCHHHHHHHHHHHHHC-
Q 020091 156 AISLYRQAAVLGDPAA---------------------------------------------QPANAEEAVKLLYQASIA- 189 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~---------------------------------------------~~~~~~~A~~~~~~a~~~- 189 (331)
|+..|++|+.+.+..+ ..++..+|+.+|.+++..
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 7766666666655444 345555555555555443
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH
Q 020091 190 -GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG 264 (331)
Q Consensus 190 -~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~ 264 (331)
.++++++|||.+|.+ .+.+++|..+|++|++- +.+.+..+||.+|.+ .| ++++|+.+|+.|+... ..
T Consensus 351 p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qg---nl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QG---NLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred CccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cc---cHHHHHHHHHHHHhcCchHH
Confidence 455555555555554 44555555555555543 445555566666533 22 6666666666666653 35
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++.++|..|..+|+.+.|++.|.+|+..++ .+|..||+.++. ..+++.+|+.-+++.+.+-|+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k--DsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK--DSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh--ccCCcHHHHHHHHHHHccCCC
Confidence 6666777777667777777777777766654 445555555543 566777777777776666553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=186.80 Aligned_cols=247 Identities=20% Similarity=0.090 Sum_probs=211.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+..+..+|+...|...|...++..|+ ...+...+|.+... .|+.++|...|.+|++.. .+.++.+||-
T Consensus 153 ~inla~al~~~~~~~~a~~~~~~alqlnP~--l~ca~s~lgnLlka----~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 153 YINLAAALVTQGDLELAVQCFFEALQLNPD--LYCARSDLGNLLKA----EGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred HhhHHHHHHhcCCCcccHHHHHHHHhcCcc--hhhhhcchhHHHHh----hcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 355566677889999999999999988765 56778889999998 899999999999999874 8889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
.+...|+...|++.|++|+.+++... ....++.|+.+|.+|+.. +++.++.|||-+|.+ +++.
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye----qG~l 302 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE----QGLL 302 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec----cccH
Confidence 99999999999999999999988776 678899999999999865 788999999998887 7889
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 213 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
+-|+..|++|++. ..+.|+.+||..+.. .| +..+|..+|.+|... .+++++++||.+|.++|.+++|..+|+
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G---~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKD-KG---SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHh-cc---chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999999875 678899999999844 44 889999999999877 678999999999999999999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 289 LATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 289 ~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+|++.. -..++.||+.++.+ ++++++|...+++.++..|.
T Consensus 379 ~al~v~p~~aaa~nNLa~i~kq--qgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLASIYKQ--QGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHhhChhhhhhhhhHHHHHHh--cccHHHHHHHHHHHHhcCch
Confidence 998874 46677888888864 56778888888888877764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-22 Score=189.69 Aligned_cols=237 Identities=27% Similarity=0.315 Sum_probs=209.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCC-----CHHH
Q 020091 89 KSWNDALRPLREAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAA-------RGSTLAMVDAGLMYWEMD-----KKEA 155 (331)
Q Consensus 89 ~~~~~~~~~~~~~~a~~~LG~~y~~g-~g~~~~~~~A~~~~~~A~~-------~~~~~a~~~lg~~~~~~~-----~~~~ 155 (331)
.++++.+++.++..+++.+|.+|..| .|+.+|.++|+.||+.|+. +|++.+++.||.+|.++. |.+.
T Consensus 232 ~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~ 311 (552)
T KOG1550|consen 232 FKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEK 311 (552)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHH
Confidence 78899999999999999999999999 7999999999999999998 899999999999999973 7899
Q ss_pred HHHHHHHHHHcCCCCC-----------C-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 156 AISLYRQAAVLGDPAA-----------Q-PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~-----------~-~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
|+.+|.++++.+++.+ . .+|..+|..||..|++.|+..|+++++.||..|.|++.|..+|+.||++|+
T Consensus 312 A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 312 ALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999998 3 478999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHhcCCC---------------------------------------ccccHHHHHHHHHHHHHcCCH
Q 020091 224 EGGYVRAMYNTSLCYSFGEG---------------------------------------LPLSHRQARKWMKRAADCGHG 264 (331)
Q Consensus 224 ~~~~~~a~~~lg~~y~~g~g---------------------------------------~~~~~~~A~~~~~~a~~~~~~ 264 (331)
+.|.+.|++.++.++..|.+ +..+...+...+.++...|+.
T Consensus 392 ~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 471 (552)
T KOG1550|consen 392 EKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNA 471 (552)
T ss_pred HccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCH
Confidence 99999999999988866632 223556777777777778888
Q ss_pred HHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhc-HHHHHHHHHhhhc
Q 020091 265 KAQLEHGLGLFTE----GEMMKAVVYLELATRAGETAADHVKNVILQQLSATS-RDRAMLVVDSWRA 326 (331)
Q Consensus 265 ~a~~~Lg~~~~~~----~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~-~~~a~~~~~~~~~ 326 (331)
.+...||.+|+.- .+++.|..+|.+|.+.+ ..+.++++.++++...-+ +..|+..+++..+
T Consensus 472 ~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 472 DAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 9999999988764 48999999999999999 999999999998765443 5566666666544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=158.91 Aligned_cols=186 Identities=27% Similarity=0.317 Sum_probs=165.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHH
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLY 184 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~ 184 (331)
...+.....+.....++..|..+|.+++..+++.++..++.+|..+ ..+.+|..+|+.||+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g-------------------~gv~~~~~~A~~~~~ 101 (292)
T COG0790 41 LKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAG-------------------KGVSRDKTKAADWYR 101 (292)
T ss_pred HhhcccccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhc-------------------cCccccHHHHHHHHH
Confidence 3334444444456899999999999999999999999999999886 336777888889999
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHhcC---CCccccHHHHHHHHHHH
Q 020091 185 QASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA---MYNTSLCYSFG---EGLPLSHRQARKWMKRA 258 (331)
Q Consensus 185 ~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a---~~~lg~~y~~g---~g~~~~~~~A~~~~~~a 258 (331)
.+++.|++.++++||.+|..|.|+.+|..+|..||++|++.|+..+ ++.+|.+|..| .++..+..+|+.||.++
T Consensus 102 ~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 102 CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999 99999999999 78888889999999999
Q ss_pred HHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 020091 259 ADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL 309 (331)
Q Consensus 259 ~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l 309 (331)
+..+++.+++.||.+|.. ..|+++|+.||.+|++.|+..++++++.++...
T Consensus 182 a~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g 236 (292)
T COG0790 182 AELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNG 236 (292)
T ss_pred HHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 999999999999998866 449999999999999999999999999555433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=173.87 Aligned_cols=228 Identities=25% Similarity=0.302 Sum_probs=198.9
Q ss_pred HHHhHHHHHH-HHHHhCCCCCHHHHHHHH------HHHhcCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 020091 81 LRAASLVCKS-WNDALRPLREAMVLLRWG------KRFKHGRGVRKN----LDKALDSFLKGAARGSTLAMVDAGLMYWE 149 (331)
Q Consensus 81 ~~~a~~~~~~-~~~~~~~~~~~~a~~~LG------~~y~~g~g~~~~----~~~A~~~~~~A~~~~~~~a~~~lg~~~~~ 149 (331)
+......... .+...+......+.+.+| .++..|.|...+ ...|+.||+.+++.|+..+++.+|.||..
T Consensus 177 v~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~ 256 (552)
T KOG1550|consen 177 VRRSEEKALSKHYNKAASSTSSDATFSLGPNAQRLQLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLA 256 (552)
T ss_pred ccchhhHhhhhhhhhccCccccccccCCCcchhhhhccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhh
Confidence 4333333344 667777777777777777 788888887777 68899999999999999999999999999
Q ss_pred C-----CCHHHHHHHHHHHHH-------cCCCCC-------------Ccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 150 M-----DKKEAAISLYRQAAV-------LGDPAA-------------QPA-NAEEAVKLLYQASIAGHVRAQYQLALCLH 203 (331)
Q Consensus 150 ~-----~~~~~A~~~~~~a~~-------~~~~~~-------------~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 203 (331)
+ +|.+.|+.||+.++. .+.+.+ ... |+++|+.+|.++++.|++++++.||.+|.
T Consensus 257 G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 257 GTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYE 336 (552)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 8 699999999999988 664444 445 99999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCHHH
Q 020091 204 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT-EGEMMK 282 (331)
Q Consensus 204 ~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-~~~~~~ 282 (331)
.|. ..+|+.+|.+||..|+..|+..|++.++.||..|.|++++...|+.||+++++.|++.+++.++.++.. .+.+..
T Consensus 337 ~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 337 TGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred cCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccH
Confidence 986 458999999999999999999999999999999999999999999999999999999999999887755 389999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 020091 283 AVVYLELATRAGETAADHVKNVILQQL 309 (331)
Q Consensus 283 A~~~~~~A~~~~~~~a~~~l~~~~~~l 309 (331)
+...+...++.++..++.+...+....
T Consensus 416 ~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 416 ALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 999999999999998888888877665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=162.69 Aligned_cols=246 Identities=10% Similarity=-0.040 Sum_probs=190.7
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY 147 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (331)
......+..|++.+|+..|.+.++..+ ++..++++|.+|.. .+++++|++.+.+|++.+ ++.+++.+|.+|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344567888999999999988887655 47889999999999 899999999999999875 889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCC--------------------------------------------------------
Q 020091 148 WEMDKKEAAISLYRQAAVLGDPAA-------------------------------------------------------- 171 (331)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~~~~~-------------------------------------------------------- 171 (331)
...|++++|+..|..+...++...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999987765543211000
Q ss_pred ---------------------CccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 172 ---------------------QPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 172 ---------------------~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
..+++++|+.+|+++++.+ .+.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIEL 360 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence 1146888999999988643 56678889998876 78899999999999875
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHH
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHV 301 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 301 (331)
++..++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+++..|++++|+.+|+++++.++......
T Consensus 361 ~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLE----LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred CCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 567788888888865 34888888888888776 4678888888888888888888888888888765443333
Q ss_pred HHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 302 KNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 302 l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.........++.++|...+++.++..|.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 33444445566777888888887766654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-17 Score=160.67 Aligned_cols=243 Identities=15% Similarity=0.013 Sum_probs=154.1
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (331)
..+..|++++|...+.++.+..|+ ++.++..+|.++.. .+++++|+..|++++.. +++.++..+|.++...|
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~----~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLK----SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 344567777777777777766554 56677777777777 67777777777777765 36667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCC---------------------------------------------CccCHHHHHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA---------------------------------------------QPANAEEAVKLLYQA 186 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~---------------------------------------------~~~~~~~A~~~~~~a 186 (331)
++++|+..|++++...+... ..+++++|+..|+++
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777666654433222 234555555555555
Q ss_pred HHC--CCHHHHHHHHHHHhcCCCCCCCHHH----HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 020091 187 SIA--GHVRAQYQLALCLHRGRGVDFNLQE----AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 258 (331)
Q Consensus 187 ~~~--~~~~a~~~lg~~y~~G~g~~~d~~~----A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 258 (331)
+.. +++.++++||.+|.. .+++++ |+.+|+++++. +++.++..+|.++.. .+++++|+.+|+++
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~a 310 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQS 310 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 443 456666667766654 444543 67777777654 556667777777754 33777777777777
Q ss_pred HHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 259 ADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 259 ~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
... .++.++.+||.++...|++++|+..|+++++.++..+...+.........++.++|...++++++..|.
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 665 445666777777777777777777777777665544333322222334556667777777777666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=157.49 Aligned_cols=240 Identities=13% Similarity=0.029 Sum_probs=182.7
Q ss_pred CchHHHhHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 020091 78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (331)
.+.+.+|...+...++... ....+.+++.+|.++.. .+++++|+.+|++++... ++.+++.+|.++...|+++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 3567788777776665431 23467788899999988 899999999999998764 6788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+|+..|+++++.++... ..+++++|+.+|+++++. ++..++.++|.++.. .+++++|+..|++
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~ 458 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 99999999998876655 678899999999998765 578888899998876 7889999999999
Q ss_pred HHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HH------HHHHHHHHH-hccCCHHHHHHHHHHH
Q 020091 222 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK------AQLEHGLGL-FTEGEMMKAVVYLELA 290 (331)
Q Consensus 222 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~------a~~~Lg~~~-~~~~~~~~A~~~~~~A 290 (331)
++.. .++.+++.+|.+|.. .+++++|+..|++|+.... .. .....+..+ ...|++++|+.+|+++
T Consensus 459 al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 459 CKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8765 668888899999865 4489999999999887632 11 122333333 3368999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 291 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 291 ~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+..++.........+...+..++.++|+..+++..+..+
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 887654444444444455667778888888888765544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-16 Score=155.62 Aligned_cols=251 Identities=13% Similarity=-0.013 Sum_probs=191.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
++.-+..++..|++.+|..++...+...++ ++.+++.||.+... .+++++|+..|++++.. +++.++..+|.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 444556678999999999999888887765 78999999999988 89999999999999887 48999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCC------
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGR------ 206 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~------ 206 (331)
++...|++++|+..|++++...+... ..+++++|+..+++++. ++++.++..++..+..|.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999877665 78899999999987654 355555554433222111
Q ss_pred ------------------------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHH----HHHHHHH
Q 020091 207 ------------------------GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHR----QARKWMK 256 (331)
Q Consensus 207 ------------------------g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~----~A~~~~~ 256 (331)
-..+++++|+..|+++++. +++.+++++|.+|... | +++ +|..+|+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~-G---~~~eA~~~A~~~~~ 274 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS-G---RSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C---CchhhHHHHHHHHH
Confidence 0045666677777776654 5677778888888652 2 444 4788888
Q ss_pred HHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 257 RAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 257 ~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++.. ++..++..+|.++...|++++|+.+|+++++..+ ..+..+++.++ ...++.++|...++++.+..|.
T Consensus 275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l--~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 275 HALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL--RQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHhCcc
Confidence 88776 5567888888888888888888888888887754 44444554444 4466778888888888777665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-16 Score=143.93 Aligned_cols=244 Identities=15% Similarity=0.020 Sum_probs=156.9
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC------HHHHHHHHH
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGL 145 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~ 145 (331)
+...+..|++++|...+.+..+..+ .++.+++.+|.+|.. .+++++|+..+++++.... ..++..||.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3444566777777777776666543 356777778877777 7788888888777776532 245677777
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHhcCCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGH-------VRAQYQLALCLHRGRG 207 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~G~g 207 (331)
+|...|++++|+.+|.++.+..+... ..+++++|+.+++++++.+. ...+..+|.++..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 192 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA--- 192 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh---
Confidence 77777788888888877776544322 56777777777777665421 1234456666654
Q ss_pred CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHH
Q 020091 208 VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+++++|+.+|+++++. ++..+++.+|.+|.. .+++++|..+|+++...+. ..++..|+.+|...|++++
T Consensus 193 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 193 -RGDLDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred -CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 56777777777777654 456667777777755 3377777777777766532 2345667777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 283 AVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 283 A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
|+.+++++.+..+..... ...+......++.++|...+++..+..|+
T Consensus 268 A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 268 GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 777777776654322211 22333334455666777777766665554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-15 Score=152.34 Aligned_cols=239 Identities=20% Similarity=0.142 Sum_probs=161.5
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C-------------
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S------------- 136 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~------------- 136 (331)
+......|++++|...+....+..+ .++.+++.+|.+|.. .+++++|+.+|+++.... +
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQP--DSALALLLLADAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3334556777777776666665543 356677777777777 677777777777776542 3
Q ss_pred ---------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHH
Q 020091 137 ---------------------TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQ 185 (331)
Q Consensus 137 ---------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~ 185 (331)
+..+..+|.++...|++++|+.+|++++...+... ..+++++|+..+++
T Consensus 682 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555666666666666666666666544333 45667777777777
Q ss_pred HHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 186 ASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 186 a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++ ++++.+++.+|.+|.. .+++++|+.+|+++++. +++.++.++|++|.. .++ .+|+.+++++...
T Consensus 762 ~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE----LKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCc-HHHHHHHHHHHhh
Confidence 654 3567777788887775 67788888888887765 566777788888755 225 6688888888765
Q ss_pred --CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 262 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 262 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
+++..+..+|.++...|++++|+.+|+++++.++.+.......+......++.++|.+++++++
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5566777888888888888888888888887765444444444444556677778888877764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-15 Score=151.82 Aligned_cols=236 Identities=14% Similarity=-0.047 Sum_probs=194.2
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A 156 (331)
.++..+|+..+.+.....++ ......+|.++.. .+++++|+.+|+++.... ...+++.+|.++...|+.++|
T Consensus 489 ~~~~~eAi~a~~~Al~~~Pd---~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA 561 (987)
T PRK09782 489 DTLPGVALYAWLQAEQRQPD---AWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAAR 561 (987)
T ss_pred hCCcHHHHHHHHHHHHhCCc---hHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHH
Confidence 36777888877777777654 3345666777777 799999999999987653 556788999999999999999
Q ss_pred HHHHHHHHHcCCCCC--------C---ccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 157 ISLYRQAAVLGDPAA--------Q---PANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~--------~---~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+.+|++++...+... . .+++++|+.+|+++++.. ++.+++++|.++.. .+++++|+.+|+++++
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 999999999875554 2 389999999999998742 48899999999987 8899999999999987
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 300 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 300 (331)
. +++.++.++|.++.. .+++++|+..|+++++. +++.++++||.++...|++++|+.+|++|++..+..+..
T Consensus 638 l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 638 LEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 5 788999999999966 44999999999999887 678999999999999999999999999999998877666
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
..........+.+++++++.+++--...
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6666655666777778887666643333
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=154.18 Aligned_cols=251 Identities=16% Similarity=0.061 Sum_probs=145.8
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD 142 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 142 (331)
+...+..+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|..+|+++++.+ +..+...
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN--DAEARFLLGKIYLA----LGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 345677778888999999999999998887665 78999999999999 899999999999998764 3333444
Q ss_pred -----------------------------------HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCH
Q 020091 143 -----------------------------------AGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANA 176 (331)
Q Consensus 143 -----------------------------------lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~ 176 (331)
+|.++...|++++|+.+|+++++..+... ..+++
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 175 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH
Confidence 44444445555555555555554443332 34455
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHH
Q 020091 177 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 252 (331)
Q Consensus 177 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 252 (331)
++|+.+++++++. .++.+++.+|.++.. .+++++|+.+|+++++. ++..++..++.++.. .+++++|.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~----~g~~~~A~ 247 (899)
T TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLS----LGNIELALAAYRKAIALRPNNPAVLLALATILIE----AGEFEEAE 247 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Confidence 5555555554432 344555555555543 44555555555555443 344455555555543 22555555
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 253 KWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 253 ~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
..+.++... .++.+.+..|.+++..|++++|+..|+++++.++......+.........++.++|...+++..+..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 326 (899)
T TIGR02917 248 KHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326 (899)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555555443 23344455555555555555555555555554432221112222223334555566666666555444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-16 Score=143.50 Aligned_cols=236 Identities=17% Similarity=0.105 Sum_probs=194.6
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----------------------
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------------------- 134 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------------------- 134 (331)
.=+.++|...+..+.....+ -...+..+|..|+. ..+|++|...|+.+=+.
T Consensus 332 ~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence 34556787777765555544 44889999999999 99999999999987321
Q ss_pred -------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC-
Q 020091 135 -------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA- 189 (331)
Q Consensus 135 -------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~- 189 (331)
..|++|+-+|+||.-+++++.|+++|++|+.+++..+ ....+++|..+|++|+..
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 4789999999999999999999999999999988766 788899999999999865
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH
Q 020091 190 -GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG 264 (331)
Q Consensus 190 -~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~ 264 (331)
.+-.|||-||.+|.. ++.++.|.-+|++|++.+ +...+..+|.+|.+ .+..++|+.+|++|+..+ ++
T Consensus 486 ~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred chhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCc
Confidence 588999999999987 788999999999999875 45567889999976 569999999999999874 67
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
-..+.-|.+++..+++++|+..++..-+. +.....++++.++..+...+. |+.-+.=..++.|
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~--Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL--ALLHFSWALDLDP 622 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH--HHHhhHHHhcCCC
Confidence 78899999999999999999999988765 556678888888888877754 4444444444444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-15 Score=155.67 Aligned_cols=56 Identities=18% Similarity=0.073 Sum_probs=35.2
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~ 134 (331)
..++..|++++|+..+.+.++..++ ++.+++.||.+|.. .+++++|+.+|+++++.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQ----QGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 3345566666666666666655442 56666667776666 66666776666666653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-15 Score=155.06 Aligned_cols=239 Identities=15% Similarity=0.065 Sum_probs=155.7
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHh---
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYW--- 148 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~--- 148 (331)
..+..|++.+|...+.+.++..+ .++.+++.||.+|.. .+++++|+.+|+++++.. +..++..|+.+|.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDN--TDSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 45678899999999988888765 478899999999999 899999999999998763 6666666666553
Q ss_pred ---------------------------------------cCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHH
Q 020091 149 ---------------------------------------EMDKKEAAISLYRQAAVLGDPAA-----------QPANAEE 178 (331)
Q Consensus 149 ---------------------------------------~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~ 178 (331)
..|++++|+.+|++++...+... ..+++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34566666666666666655443 4566666
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---------------------------------
Q 020091 179 AVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--------------------------------- 223 (331)
Q Consensus 179 A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~--------------------------------- 223 (331)
|+..|+++++ ++++.+.+.+|.++.. .++.++|+.++++..
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 6666666554 3455555555554433 344444444443311
Q ss_pred ---------HCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 224 ---------EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 224 ---------~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
...++.....+|.+|.. .+++++|+..|++++.. +++++++.++.+|...|++++|+..|+++.+
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~----~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQ----RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 11234455566666644 34777777777777665 4567777777777777777777777777766
Q ss_pred cC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 293 AG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 293 ~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
.. +......++.++ ...++.++|...+++++...
T Consensus 666 ~~p~~~~~~~~la~~~--~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 666 TANDSLNTQRRVALAW--AALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred cCCCChHHHHHHHHHH--HhCCCHHHHHHHHHHHhhhC
Confidence 53 344444444444 34566677777777766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=136.05 Aligned_cols=247 Identities=13% Similarity=0.029 Sum_probs=172.9
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKR-FKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~-y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
+.++.+++..|++..|+++++-+.++......+.+ .+|..+ |.+| -+|+.+|.+|-..|+..+ ++.++.+-|+
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa-~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAA-NNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHh-hhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 77888999999999999988877766554434444 445544 4444 589999999999998876 8999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHH--HHHCCCHHHHHHHHHHHhcCCCCCCCH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQ--ASIAGHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~--a~~~~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
+-+..||+++|.++|+.|+..+.... ..++.++|+.+|.+ ++-.++++.++.++.+|+. ..|.
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~----led~ 574 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDP 574 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCH
Confidence 99999999999999999987644332 78999999999988 5667999999999999986 8899
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 213 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
.+|++||.++... .++..+..||.+|-+ +.|..+|+.++-.+-.- -+.+...+||.+|.+..-.++|+.||+
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999764 788888888888844 22555555555444433 233444455555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 289 ~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
+|+-+.+....-.+-....-...++.++|..+++..-+.
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 555444433333333333333444444554444444333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-15 Score=125.71 Aligned_cols=197 Identities=18% Similarity=0.168 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.+|.. .+++++|+.+|+++++.. ++.++..+|.++...|++++|+.+|+++++..+
T Consensus 30 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------- 96 (234)
T TIGR02521 30 AAKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--------- 96 (234)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------
Confidence 46778888999988 899999999999988764 778888999999999999999999998888765
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. .....+..+|.+|.. .+++++|..
T Consensus 97 ------------~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 156 (234)
T TIGR02521 97 ------------NNGDVLNNYGTFLCQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEK 156 (234)
T ss_pred ------------CCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHH
Confidence 467788889988876 78899999999999864 345678888888865 448999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+|.++... ++..++..+|.++...|++++|..+++++.+..+................++.+++..+.+.+....|
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99998876 45678888999999999999999999998876433333333333334456677778777777665443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-16 Score=121.87 Aligned_cols=163 Identities=22% Similarity=0.284 Sum_probs=139.9
Q ss_pred chHHHhHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 020091 79 PQLRAASLVCKSWNDALRP-LREAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~-~~~~~a~~~LG~~y~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (331)
.+++.|..+ ++.-.+ .+++.++|.+|..++.|. |..++...|+++|+.|++.+++.++.++|.+++.+.-
T Consensus 49 knF~~A~kv----~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~---- 120 (248)
T KOG4014|consen 49 KNFQAAVKV----FKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEK---- 120 (248)
T ss_pred HHHHHHHHH----HHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcC----
Confidence 466777544 444443 568999999999999999 6789999999999999999999999999999988731
Q ss_pred HHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC----------CCC----------CCHHHHH
Q 020091 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR----------GVD----------FNLQEAA 216 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~----------g~~----------~d~~~A~ 216 (331)
+.....|..+|..++++|++.++..+.++|..+|..|. |.+ +|.++|.
T Consensus 121 ------------~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 121 ------------DRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL 188 (248)
T ss_pred ------------CccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence 11245678899999999999999999999999999871 333 8999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 217 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 217 ~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
++-.+|++.+++.++.|+..+|..|.||++|..+|..+-.+|.+.
T Consensus 189 qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 189 QFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=147.23 Aligned_cols=239 Identities=13% Similarity=0.069 Sum_probs=186.9
Q ss_pred chHHHhHHHHHHHHHHhCC-CC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHH
Q 020091 79 PQLRAASLVCKSWNDALRP-LR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~-~~--~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~ 154 (331)
|++.++...|..+.+..+. .+ ++.+++.||.++.. +++.+|+..|.+++... +......+|..+...|+++
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-----TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 4455555566666666554 34 89999999999986 58888999888888664 3334555677777899999
Q ss_pred HHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
+|+..|++++...+... ..+++++|+.+|+++++.+ +......++..... .+++++|+.+|+++
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~A 602 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 99999999877644332 6789999999999998763 44555555555443 58899999999999
Q ss_pred HHCC-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHH
Q 020091 223 AEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 299 (331)
Q Consensus 223 ~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~ 299 (331)
++.. +..++.++|.++.. .+++++|+.+|++++.. +++.++.++|.++...|++++|+..|++|++..+..+.
T Consensus 603 L~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 603 LNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8752 48889999999976 45999999999999987 57889999999999999999999999999987654444
Q ss_pred HHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 300 HVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 300 ~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
............++.++|...+++..+..|.
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444444446677788999999999888774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-14 Score=131.36 Aligned_cols=242 Identities=16% Similarity=0.092 Sum_probs=189.1
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+......|++.+|...+...... ++.. ...++..||.+|.. .+++++|+.+|+++.+.. +..++..++.
T Consensus 75 la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~ 149 (389)
T PRK11788 75 LGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLK----AGLLDRAEELFLQLVDEGDFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 334456789999998877766553 2111 23578899999999 899999999999999753 6778999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC----------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA----------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g 207 (331)
++...|++++|+..|++++..++... ..+++++|+.+|+++++. ++..+++.+|.+|..
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 226 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA--- 226 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH---
Confidence 99999999999999999998765432 468999999999998764 578899999999987
Q ss_pred CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHHHH
Q 020091 208 VDFNLQEAARWYLRAAEGGY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A 283 (331)
.+++++|+++|+++.+.+. ..++..++.+|.. .++.++|..+++++.... +......++.++...|++++|
T Consensus 227 -~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 227 -QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred -CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHH
Confidence 7899999999999997643 3457788988865 449999999999998763 344558899999999999999
Q ss_pred HHHHHHHHHcCCHHHHHH--HHHHHhhhchhcHHHHHHHHHhhh
Q 020091 284 VVYLELATRAGETAADHV--KNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 284 ~~~~~~A~~~~~~~a~~~--l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
+.+|+++++..+.....+ +......-..++..++..++++++
T Consensus 302 ~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 302 QALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999999865544333 222221212446677777777665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-15 Score=135.11 Aligned_cols=231 Identities=12% Similarity=0.061 Sum_probs=195.1
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+.....+++.|++.+|.-.+....++.| .|++|+..||.+... ..+-..|+..++++.+++ +.+++..||..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4555667889999988766666666544 589999999999999 899999999999999885 99999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC------------------CccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhc
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA------------------QPANAEEAVKLLYQASIA----GHVRAQYQLALCLHR 204 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~------------------~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~ 204 (331)
|.+.+.-.+|++++.+=+...++.. ....+..-.++|..++.. -+++.+.-||.+|.-
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 9999999999999999887765554 222345566777777654 479999999999975
Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCH
Q 020091 205 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM 280 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~ 280 (331)
.+++++|+.+|+.|+.. .+..-|+.||..+..|. ..++|+..|++|++. ++..+.++||..++..|.|
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~----~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN----RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc----ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 78999999999999865 77888999999998865 899999999999988 7899999999999999999
Q ss_pred HHHHHHHHHHHHcCC------------HHHHHHHHHHHhhhchhc
Q 020091 281 MKAVVYLELATRAGE------------TAADHVKNVILQQLSATS 313 (331)
Q Consensus 281 ~~A~~~~~~A~~~~~------------~~a~~~l~~~~~~l~~~~ 313 (331)
++|..+|-.|+.+.. ...+..|..++..+.+.|
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999986521 356778888888887777
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=130.93 Aligned_cols=236 Identities=19% Similarity=0.129 Sum_probs=126.9
Q ss_pred cCCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCC-CC-------------------------------HHHHHHHH
Q 020091 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPL-RE-------------------------------AMVLLRWG 108 (331)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-------------------------------~~a~~~LG 108 (331)
|...+.-.-+.+...+...++++|+.++..+.+..|-. ++ ++.+..+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 44433333344455667778888887777777664421 12 22333444
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccC
Q 020091 109 KRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPAN 175 (331)
Q Consensus 109 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~ 175 (331)
..|.- .++.++|+.||++|+.++ ...++..+|.-|.+.++...|+..|++|++++|.+- ..+-
T Consensus 338 NYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 338 NYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred hHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence 44544 556666666666666554 555666666666666666666666666666655432 4444
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHhcCCCccccHHHH
Q 020091 176 AEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 176 ~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~--~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
+.-|+.+|++|.. ++++..+.-||.||.. ..+.++|+.+|++|+..|+. .+++.||.+|.+ .++.++|
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~eA 485 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEA 485 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHH
Confidence 5555555555543 3455555555555544 44555555555555555544 455555555544 3355555
Q ss_pred HHHHHHHHHc-------CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 252 RKWMKRAADC-------GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 252 ~~~~~~a~~~-------~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
..+|++.++. ++ ..+...|+..+.+.+++++|-.|..+++.- ..+.++|+.+++
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-----------------~~e~eeak~LlR 548 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-----------------ETECEEAKALLR 548 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----------------CchHHHHHHHHH
Confidence 5555555431 11 233444555555555555555554444332 234456666666
Q ss_pred hhh
Q 020091 323 SWR 325 (331)
Q Consensus 323 ~~~ 325 (331)
+++
T Consensus 549 eir 551 (559)
T KOG1155|consen 549 EIR 551 (559)
T ss_pred HHH
Confidence 665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-14 Score=135.65 Aligned_cols=186 Identities=13% Similarity=-0.014 Sum_probs=141.2
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CC-CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH----GR-GVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~----g~-g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (331)
..+++.+|...+.+.++..| +++.++..||.+|.. |. ...+++++|..++++|++.+ ++.++..+|.++..
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34567788888887777655 478889999987752 11 13567999999999999885 89999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 020091 150 MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GY 227 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~ 227 (331)
.|++++|+.+|+++++++| +++.+++++|.+|.. .+++++|+.+|+++++. .+
T Consensus 351 ~g~~~~A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSP---------------------ISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred ccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999987 577888888888775 67788888888888775 33
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 228 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+.+.+.++.++.. ..++++|+.+++++... +++.++..+|.+|...|++++|..++++....
T Consensus 406 ~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 406 AAAGITKLWITYY----HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred hhhHHHHHHHHHh----ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 4444444444433 23678888888887654 35667778888888888888888888776554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-14 Score=116.20 Aligned_cols=196 Identities=19% Similarity=0.157 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+...||.-|+. .+|+..|..-+++|++.+ +..++..++.+|...|+.+.|.+.|++|+.+.+
T Consensus 35 a~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p---------- 100 (250)
T COG3063 35 AKARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP---------- 100 (250)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----------
Confidence 3556678888888 799999999999998875 888999999999999999999999999998877
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
++.++.+|.|..+.. ++.+++|..+|++|+.. ....++-|+|.|-.+ .++.+.|.++
T Consensus 101 -----------~~GdVLNNYG~FLC~----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~ 161 (250)
T COG3063 101 -----------NNGDVLNNYGAFLCA----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEY 161 (250)
T ss_pred -----------CccchhhhhhHHHHh----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHH
Confidence 588899999987765 66799999999999876 346778899999876 4489999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
|+++++. ..+.+...++..+++.|++..|..++++-..-+...+..++-.+...-..++.+.+...-.++.+.-|
T Consensus 162 l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 162 LKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999877 56788888999999999999999999988777666665544444433445666666655555655554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-14 Score=124.98 Aligned_cols=211 Identities=15% Similarity=0.084 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
..-+.++.+|.. ....+++++-++.-+..|.+ .-....|.+.....|+++|+..|+.....+|=.-
T Consensus 228 M~~~F~~~a~~e----l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 228 MKKFFLKKAYQE----LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 334455566655 45667777777777777644 3445678888888999999999998887633221
Q ss_pred --------------------------------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 172 --------------------------------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 172 --------------------------------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
..++.++|+.+|++|+++ +...++.-+|+=|.+ .++
T Consensus 304 N~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE----mKN 379 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE----MKN 379 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH----hcc
Confidence 678899999999999876 578899999999987 899
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
...|++.|++|++. -|..|++.||..|.- .+-+.=|+.||++|... .+...+..||.||.+.++.++|+++|
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEI----MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999987 467899999999965 55788999999999887 56778889999999999999999999
Q ss_pred HHHHHcCCH--HHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 288 ELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 288 ~~A~~~~~~--~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
++|+..|+. .+...++.+++.+... ++|...+.+..+
T Consensus 456 krai~~~dte~~~l~~LakLye~l~d~--~eAa~~yek~v~ 494 (559)
T KOG1155|consen 456 KRAILLGDTEGSALVRLAKLYEELKDL--NEAAQYYEKYVE 494 (559)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 999999876 7888888888887544 577777777553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-15 Score=138.07 Aligned_cols=220 Identities=14% Similarity=0.050 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA--RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
...+..+|..|.. ...-+..+|+..|.+--+ .+...++..+|..|++..++++|..+|+.+-...+-..
T Consensus 317 ~~llr~~~~~~~~--~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 317 MELLRGLGEGYRS--LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 3456667766654 114567789999998322 25667888999999999999999999999876644333
Q ss_pred --------------------------------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 172 --------------------------------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 172 --------------------------------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
.++|++.|+++|++|+.. +++.|+.-+|.=+.. ...
T Consensus 395 T~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~----~ee 470 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA----TEE 470 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh----hHH
Confidence 689999999999999865 688899999987654 678
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
+++|..+|++|+.. .+..|||.||.+|.+ .+.++.|..+|++|++.+. ......+|.++...|+.++|+.+|
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 99999999999865 689999999999987 5599999999999999865 455678999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 288 ELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 288 ~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++|+..++.+..-.+..+......++..+|.++++++++..|.
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 9999987655555444555455556668999999999988875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=132.77 Aligned_cols=245 Identities=16% Similarity=0.026 Sum_probs=100.9
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+..+..++..|++++|..++.......++..++..+..+|.+... .++++.|+..|++.+..+ .+..+..++.+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----LGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc
Confidence 444566788899999988776655555445678888899999988 899999999999998775 56667778777
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCCCH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
...+++++|+.+++++.+..+... ..++++++...+.++... .++..+..+|.++.. .|+.
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~ 162 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDP 162 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCH
Confidence 688999999999988876543222 678899999999886543 467888899999987 7899
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 213 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
++|+++|++|++. ++..+...+++++.. .++.+++...+...... .++..+..+|.++...|+.++|+.+|+
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999875 678899999999964 33788877777766544 566778899999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 289 ~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
++....+.+....+.........++.++|..+.+++.+
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 99997665555555555555666777889888888653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=122.30 Aligned_cols=214 Identities=13% Similarity=0.003 Sum_probs=147.5
Q ss_pred HHHhHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 020091 81 LRAASLVCKSWNDALR--PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~--~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A 156 (331)
.+.++..+.+.+...+ +...+..++.+|.+|.. .+++++|+..|.++++.. ++.+++++|.++...|++++|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444444444443222 12357789999999988 899999999999998874 889999999999999999999
Q ss_pred HHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 157 ISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~-~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+..|++++++++... ..+++++|+..|+++++.+....+..+.. ++.. .+++++|+..|.+++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHHHh
Confidence 999999999887765 57889999999999887532222222222 2222 5689999999988876
Q ss_pred CCCHHHHH-HHHHHHhcCCCccccHHHHHHHHHHHH----Hc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-H
Q 020091 225 GGYVRAMY-NTSLCYSFGEGLPLSHRQARKWMKRAA----DC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-T 296 (331)
Q Consensus 225 ~~~~~a~~-~lg~~y~~g~g~~~~~~~A~~~~~~a~----~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-~ 296 (331)
..+...+. .+..++ .|.. +..+++..+.++. +. ...+++++||.++...|++++|+.+|++|++.++ .
T Consensus 194 ~~~~~~~~~~~~~~~-lg~~---~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KLDKEQWGWNIVEFY-LGKI---SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hCCccccHHHHHHHH-ccCC---CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 54443332 222233 2221 2233443333322 22 3457899999999999999999999999999874 4
Q ss_pred HHHHHHHHHH
Q 020091 297 AADHVKNVIL 306 (331)
Q Consensus 297 ~a~~~l~~~~ 306 (331)
...+.+..+.
T Consensus 270 ~~e~~~~~~e 279 (296)
T PRK11189 270 FVEHRYALLE 279 (296)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-12 Score=112.31 Aligned_cols=195 Identities=14% Similarity=0.084 Sum_probs=163.5
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l 143 (331)
......+...+..|++++|...+.+.++..+ .++.++..+|.+|.. .+++++|+.+|+++++.. ++.+++++
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQ----LGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3345555667788999999988888877654 468899999999999 899999999999999864 78899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
|.++...|++++|+.+|++++..... ......++++|.+|.. .+++++|..+|.+++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLY-------------------PQPARSLENAGLCALK----AGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccc-------------------ccchHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 99999999999999999999875321 1356778899999986 789999999999998
Q ss_pred HC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 224 EG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 224 ~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.. ++..++..+|.++.. .+++++|..+++++... .++..+..++.++...|+.++|..+.+.+...
T Consensus 163 ~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYL----RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HhCcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 75 567889999999976 45999999999999876 45677778899999999999999998876543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-12 Score=131.92 Aligned_cols=87 Identities=9% Similarity=-0.047 Sum_probs=41.7
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~ 153 (331)
...|++.+|...+.+.++..|+ ++.+...+|.++.. .+++++|+.++++++... ++. ++.+|.++...|++
T Consensus 60 ~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~l~~----~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLEPQ--NDDYQRGLILTLAD----AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH
Confidence 3445555554444444444332 34444455555544 455555555555554432 444 44555555555555
Q ss_pred HHHHHHHHHHHHcCCC
Q 020091 154 EAAISLYRQAAVLGDP 169 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~ 169 (331)
++|+..|+++++..|.
T Consensus 133 ~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 133 WDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555555555444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-12 Score=129.53 Aligned_cols=97 Identities=13% Similarity=-0.031 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQ 307 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~ 307 (331)
++..++.++.. .++.++|+..|++++.. ++...++.+|.++...|++++|+..++++++..+.+....+..++.
T Consensus 361 a~~~~a~~l~~----~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 361 GQSLLSQVAKY----SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 33444444433 23566666666666554 4556666666666667777777777777766655555555555556
Q ss_pred hhchhcHHHHHHHHHhhhcCCCC
Q 020091 308 QLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 308 ~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+..++.++|..+++++++..|+
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCC
Confidence 66666667777777776666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=115.95 Aligned_cols=182 Identities=12% Similarity=-0.048 Sum_probs=141.1
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
...........|++.+|...+.+.++..|+ ++.+++.+|.+|.. .+++++|+..|.++++.. +..+++++|.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445555566779999999888888887654 79999999999999 999999999999999874 8899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCCCCHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GRGVDFNLQE 214 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~g~~~d~~~ 214 (331)
++...|++++|+..|++++...+... ...++++|+..+.+++...++..+. ++..+.. |. .+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~---~~~~~ 216 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGK---ISEET 216 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccC---CCHHH
Confidence 99999999999999999999987664 5678999999998877654544443 3443332 21 12233
Q ss_pred HHHHHHHHH----H--CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC
Q 020091 215 AARWYLRAA----E--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263 (331)
Q Consensus 215 A~~~~~~A~----~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 263 (331)
++..+.++. + .....++++||.+|.. .+++++|+.+|++|+..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~----~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLS----LGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 443343322 2 2356789999999975 4499999999999998864
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=124.09 Aligned_cols=222 Identities=16% Similarity=0.095 Sum_probs=183.1
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
+-+++.|+......+..+..+.-|+ .+..++.+|..|.. -+++++|..||-||..++ ...+|...|..+.-.
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCC--CCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 3455666666665555666666554 57789999999999 899999999999999876 788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 151 DKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
+..++|+..|..|..+-+... ...+++-|..+|.+|.. +.+|-....+|.+... .+.+.+|..
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~ 435 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALK 435 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHH
Confidence 999999999999999866655 68999999999999754 6899999999998875 678999999
Q ss_pred HHHHHHHC----CC-----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHH
Q 020091 218 WYLRAAEG----GY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 286 (331)
Q Consensus 218 ~~~~A~~~----~~-----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~ 286 (331)
||+.+++. +. ...+.+||.+|.. .+.+.+|+.+|++++.. .++..+-.+|.+|...|+++.|+.+
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 99999732 22 3348899999977 56899999999999987 6788889999999999999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHhh
Q 020091 287 LELATRAGE--TAADHVKNVILQQ 308 (331)
Q Consensus 287 ~~~A~~~~~--~~a~~~l~~~~~~ 308 (331)
|.+|+-..+ .-+...|+...+.
T Consensus 512 fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHh
Confidence 999987754 3455566655544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-13 Score=129.15 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=197.1
Q ss_pred HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHH
Q 020091 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAI 157 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~ 157 (331)
++.|...+...++..++ |..++..-+.+.+. .+||..|+.||++++... -++.-..+|.|++..++.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~--Nil~LlGkA~i~yn----kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--NILALLGKARIAYN----KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--chHHHHHHHHHHhc----cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHH
Confidence 47888888888888764 78888777777888 899999999999998764 6677778999999999999999
Q ss_pred HHHHHHHHcCCCCC--------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 158 SLYRQAAVLGDPAA--------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 158 ~~~~~a~~~~~~~~--------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
..|+++.+++|... ....+.+++..+.++-. ..+|.+...|+..|.. .+|+..+.++..-
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHH
Confidence 99999999988655 56778889999998854 4789999999999886 8999999999998
Q ss_pred HHHCC-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 222 AAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 222 A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
|+... -..++|++|.+|+. .| |+++|..||.++....+ .-..+.||.+|...|+++.|..+|++....
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha-~G---d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHA-QG---DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHh-hc---cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 87653 35679999999965 44 99999999999987633 567889999999999999999999999876
Q ss_pred --CCHHHHHHHHHHHhhh--chhcHHHHHHHHHhhhcCCCC
Q 020091 294 --GETAADHVKNVILQQL--SATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 294 --~~~~a~~~l~~~~~~l--~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.......++.++... .+..+++|..++.+.++.-|.
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 5677888888888777 355667888888887765553
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=107.22 Aligned_cols=176 Identities=19% Similarity=0.162 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
..|++++.||.... |+.+|+++|...|+.-++. +++.+++.+|..+..++ -+...++.
T Consensus 32 K~Pe~C~lLgdYlE---gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GK------------------gG~~~~l~ 90 (248)
T KOG4014|consen 32 KRPESCQLLGDYLE---GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGK------------------GGDDASLS 90 (248)
T ss_pred CCchHHHHHHHHHH---HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhccc------------------CCCccCHH
Confidence 47999999998764 3689999999999998876 59999999998887752 12566788
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRG---VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g---~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
+|+++|+.+++.+.+.+..++|.++.+|.- ..-|..+|.+|+++|++.++..++++|..+|..|.. ++..-
T Consensus 91 ~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~------k~~t~ 164 (248)
T KOG4014|consen 91 KAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKE------KFKTN 164 (248)
T ss_pred HHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccch------hhccc
Confidence 888888888888999999999999998762 244588999999999999999999999999977521 10000
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 020091 255 MKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQ 307 (331)
Q Consensus 255 ~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~ 307 (331)
|.-.|.+.-.-.++ .-.+|.++|++|--+|++.+...++.|+..++.
T Consensus 165 ---ap~~g~p~~~~~~~---~~~kDMdka~qfa~kACel~~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 165 ---APGEGKPLDRAELG---SLSKDMDKALQFAIKACELDIPQACANVSRMYK 211 (248)
T ss_pred ---CCCCCCCcchhhhh---hhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHH
Confidence 11112221122222 223455555555555555555555555555554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.3e-13 Score=128.08 Aligned_cols=196 Identities=11% Similarity=-0.030 Sum_probs=153.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCCCC
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM---------DKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~~~~~~ 171 (331)
.+|..|..+... ....++++|+.+|++|++.. ++.++..||.+|... +++++|+.++++++++++
T Consensus 260 ~~~lrg~~~~~~-~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP--- 335 (553)
T PRK12370 260 MVYLRGKHELNQ-YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH--- 335 (553)
T ss_pred HHHHHhHHHHHc-cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC---
Confidence 355556544331 23567899999999999875 888999999887632 346677777777776655
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHH
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
+++.++..+|.++.. .+++++|+.+|++|++. +++.+++.+|.++.. .++++
T Consensus 336 ------------------~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~ 389 (553)
T PRK12370 336 ------------------NNPQALGLLGLINTI----HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLE 389 (553)
T ss_pred ------------------CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHH
Confidence 689999999999976 78999999999999876 678899999999976 44999
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 250 QARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA---GETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 250 ~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
+|+.+|+++++... +.+.+.++.+++..|++++|+.+++++++. +...+..+++.++. ..++.++|.+.++++
T Consensus 390 eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~--~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 390 EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS--LKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH--hCCCHHHHHHHHHHh
Confidence 99999999998843 455566677788899999999999999865 34566677777665 467778999999998
Q ss_pred hcCCCC
Q 020091 325 RAMPSL 330 (331)
Q Consensus 325 ~~~~~~ 330 (331)
...+|.
T Consensus 468 ~~~~~~ 473 (553)
T PRK12370 468 STQEIT 473 (553)
T ss_pred hhccch
Confidence 776664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-13 Score=115.02 Aligned_cols=212 Identities=16% Similarity=0.116 Sum_probs=117.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------Cc
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QP 173 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~ 173 (331)
.+|.||.+ .+=+.+|...|+.++.+. +++....|+.+|.+......|+..|.+.++.-|.+. ..
T Consensus 228 Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 45666665 555666666666665543 566666666666666666666666666555544433 44
Q ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHH
Q 020091 174 ANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
+++++|+++|+.+++. .+.++.-.+|.-|.. .++.+-|+.||++.+..| ++.-..|+|.|-..+. +++
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq----Q~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ----QID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc----chh
Confidence 5556666666665554 345555555544443 345666666666666554 3455556666554422 556
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 250 QARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 250 ~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
.++..|++|... .-.+.|++||.+....||+..|...|+.++-.++..+..+.+........+++..|..++...
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 666666665433 113556666666666666666666666666554444444334444445556666666666555
Q ss_pred hcCCC
Q 020091 325 RAMPS 329 (331)
Q Consensus 325 ~~~~~ 329 (331)
+...|
T Consensus 456 ~s~~P 460 (478)
T KOG1129|consen 456 KSVMP 460 (478)
T ss_pred hhhCc
Confidence 55554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-13 Score=116.15 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=174.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (331)
..|-+.+|...+..-+ ..+.+++.+..|..+|.+ ...+..|...|...++. +++.-...++.++...++.+
T Consensus 235 rLgm~r~AekqlqssL---~q~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 4455566653333333 336789999999999999 89999999999999987 47777788889999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+|.++|+.+++..+.+. -.++++-|+.+|++.+..| +++-..|+|.|+.. .++++-++..|++
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhHHHHHH
Confidence 99999999999877665 6789999999999999986 78999999999987 5789999999999
Q ss_pred HHHC-----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 222 AAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 222 A~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
|... .-.+.|||||.+. -+.| |+.-|..+|+.|... .+.+++++||.+-...|++++|..+|.-|-...
T Consensus 384 Alstat~~~~aaDvWYNlg~va-V~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVA-VTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhhccCcchhhhhhhccceeE-Eecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9753 2367899999998 5666 999999999999876 678999999999999999999999999987765
Q ss_pred CH
Q 020091 295 ET 296 (331)
Q Consensus 295 ~~ 296 (331)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 53
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=108.72 Aligned_cols=162 Identities=15% Similarity=0.064 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
..+...||.-|.+.||+..|..-+++|++.++ .+..++.-++.+|.. .++.+.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DP---------------------s~~~a~~~~A~~Yq~----~Ge~~~A~ 89 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDP---------------------SYYLAHLVRAHYYQK----LGENDLAD 89 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHH----cCChhhHH
Confidence 35678899999999999999999999999987 589999999999987 78899999
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
+.|++|+.. ++.+.++|.|+.+.. .| .+++|..+|++|+.. ...+++.|+|.|-...|+++.|..+|+++
T Consensus 90 e~YrkAlsl~p~~GdVLNNYG~FLC~-qg---~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 90 ESYRKALSLAPNNGDVLNNYGAFLCA-QG---RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred HHHHHHHhcCCCccchhhhhhHHHHh-CC---ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 999999876 788999999999965 44 999999999999987 24688999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 291 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 291 ~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
++.++.....++.+.-.++..++.-+|...++.+..+
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 9999988888899999999999999999999887644
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-11 Score=119.11 Aligned_cols=239 Identities=11% Similarity=-0.000 Sum_probs=171.9
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCH
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~ 153 (331)
..+..++......+..- ..||.++..|+..|+. .+|++.+.++..-++... -++++|++|.+|...||+
T Consensus 250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 44556655555555443 3478888888888887 788888888888776543 455678888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
++|..+|.+++..++... ..++++.++.+|++..+ +++.+.+..||.+|..---.+...++|..+.
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 888888888887776663 67788888888888765 4778888888888875101123457888888
Q ss_pred HHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 220 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 220 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
.++.+. .+..++..++.+|.. .|...++.+|..|.+. -.++..+++|..++..|++.+|...|..|
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 888765 577888888888864 3666667777777632 34677888888888888888888888888
Q ss_pred HHc-----CCHH-------HHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 291 TRA-----GETA-------ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 291 ~~~-----~~~~-------a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
... +... -.+|++.+++.+... ..|.+.+..++..+|.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~--~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT--EVAEEMYKSILKEHPG 528 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHCch
Confidence 654 1122 377888888777554 4677778887777763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-12 Score=115.93 Aligned_cols=245 Identities=13% Similarity=0.071 Sum_probs=200.6
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDA 143 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~l 143 (331)
..++-..+...++.+-..++...++..+- ...-.-..||-+|..| + ...+|..+.++ ..+..|+.+
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~-----~---~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELG-----K---SNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhc-----c---cchHHHHHHHHHHhCCCCCcchhhH
Confidence 45556678889999999999999998774 3445566788666663 3 34455555443 477889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCC
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~ 210 (331)
|..|...+++.+|..+|.||..+++..+ .++..++|+..|..|.+. |...-...+|.-|.. .+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~----t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR----TN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH----hc
Confidence 9999999999999999999999888777 899999999999999986 777788899999976 78
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCH-----HHHHHHHHHHhccCC
Q 020091 211 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG-----KAQLEHGLGLFTEGE 279 (331)
Q Consensus 211 d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~-----~a~~~Lg~~~~~~~~ 279 (331)
++..|.++|.+|... .++..+..+|.+.+. .+.+.+|..||+.+... ++. ..+.+||.++.+.+.
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 999999999999764 889999999999876 55999999999999732 221 236799999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 280 MMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 280 ~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++|+.+|++|+...+.++...-+.++.....++++.|...+.+.+-..|.
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 999999999999987766666666666667778899999999997766664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-11 Score=115.69 Aligned_cols=242 Identities=13% Similarity=0.085 Sum_probs=176.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
..+..+..++-.|++++|..+|...+++.+. ++.+++.||.||.+ .||.+++......|+..+ +.+-|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3456666677889999999999999999774 79999999999999 899999999999999874 889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCC-HH------HHHHHHHHHhcCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGH-VR------AQYQLALCLHRGR 206 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~-~~------a~~~lg~~y~~G~ 206 (331)
....+.|+.++|+-+|.+|+...|..- ..++...|...|.+...... ++ ..+..+..+..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-- 292 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-- 292 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999988876 55677777777777655422 11 11111222211
Q ss_pred CCCCCHHHHHHHHHHHHH--------------------------------------------------------------
Q 020091 207 GVDFNLQEAARWYLRAAE-------------------------------------------------------------- 224 (331)
Q Consensus 207 g~~~d~~~A~~~~~~A~~-------------------------------------------------------------- 224 (331)
.++-+.|++.+..+..
T Consensus 293 --~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 293 --HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred --hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 1122333333332221
Q ss_pred ----------------------------------------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---
Q 020091 225 ----------------------------------------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 261 (331)
Q Consensus 225 ----------------------------------------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 261 (331)
..++.-++.++..|.+ ...+.+|+.+|......
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~----~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN----IGKYKEALRLLSPITNREGY 446 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh----cccHHHHHHHHHHHhcCccc
Confidence 0123344556666644 34788888888888766
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 262 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 262 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
++...++.+|.||...|.+++|+.+|++++.. ++.++...|+.++.++. +.++|.+.+...
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g--~~EkalEtL~~~ 509 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG--NHEKALETLEQI 509 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC--CHHHHHHHHhcc
Confidence 45668889999999999999999999999875 56777777777776654 445777777664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=112.72 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=177.5
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
.-++-.|+...+..-+...+...+.. ...+..+|.+|.+ ..+.++-...|.+|.+.+ +++.++.-|.+++-.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~--~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAF--NSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCccc--chHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH
Confidence 34566788888877777666665543 3448889999999 899999999999999886 999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 151 DKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
+++++|+.=|++++.++|... ....++++...|+.+.+. ..++.+...|.++.. ++++++|++
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k 483 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHH
Confidence 999999999999999988777 677888889999988874 789999999999987 899999999
Q ss_pred HHHHHHHCCCH------H--HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHH
Q 020091 218 WYLRAAEGGYV------R--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 218 ~~~~A~~~~~~------~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
.|.+|++.... . .+.+-|.+..+ -.+|+..|...+++|++.++ ..|+..||.+...+|+.++|+.+|
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999886432 2 33344444433 24699999999999999865 578899999999999999999999
Q ss_pred HHHHHcCCHHHH
Q 020091 288 ELATRAGETAAD 299 (331)
Q Consensus 288 ~~A~~~~~~~a~ 299 (331)
++++..--....
T Consensus 561 Eksa~lArt~~E 572 (606)
T KOG0547|consen 561 EKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHhHHH
Confidence 999887544433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=111.44 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCCCC---
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAA--- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~~--- 171 (331)
-++.++.+-|.+.+. .||+++|.++|+.|+..+ ..++++++|..+...|+.++|+.+|.+.-. +++...
T Consensus 488 yn~~a~~nkgn~~f~----ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFA----NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred cCHHHhhcCCceeee----cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 477888888888877 899999999999999876 778999999999999999999999987632 232222
Q ss_pred ------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC
Q 020091 172 ------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG 241 (331)
Q Consensus 172 ------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g 241 (331)
...|..+|++||.++.. +++|..+..||.+|.+ .+|..+|++|+-..-.- -+....-+||..|..
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyid- 638 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID- 638 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-
Confidence 67899999999999865 5899999999999987 88999999998877543 567778899999976
Q ss_pred CCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhh
Q 020091 242 EGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL 309 (331)
Q Consensus 242 ~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l 309 (331)
..-.++|+.||++|+-... ..-+..++.|+...|++++|+..|+..-+.- +.++..-|-.+-..+
T Consensus 639 ---tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 639 ---TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred ---hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 4477899999999987643 4555778999999999999999999987753 455555555544444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-13 Score=117.40 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--------
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------- 171 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------- 171 (331)
.+.++.++.. .+++++|.+.+++++.. +++..+..+|.+....+++++|+..|++.+..++...
T Consensus 11 ~l~~A~~~~~----~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~ 86 (280)
T PF13429_consen 11 ALRLARLLYQ----RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3467888888 89999999999765533 4777888999999999999999999999998876644
Q ss_pred --CccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCc
Q 020091 172 --QPANAEEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 172 --~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~ 244 (331)
..+++++|+.+++++.+. +++..+..+..++.. .++++++...+.++... .++..+..+|.++..
T Consensus 87 l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~---- 158 (280)
T PF13429_consen 87 LLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR----LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ---- 158 (280)
T ss_dssp -------------------------------H-HHH----TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHH----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----
Confidence 678899999998887664 556666666666765 68899999999997653 467788899999976
Q ss_pred cccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~ 320 (331)
.++.++|+.+|+++++. ++.++...|++++...|+.+++...++...... ++.-...++.++.. .++.++|...
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~--lg~~~~Al~~ 236 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ--LGRYEEALEY 236 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH--HT-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc--cccccccccc
Confidence 34999999999999987 567888999999999999999777776665542 33334455555544 4567899999
Q ss_pred HHhhhcCCCCC
Q 020091 321 VDSWRAMPSLH 331 (331)
Q Consensus 321 ~~~~~~~~~~~ 331 (331)
+++....+|.+
T Consensus 237 ~~~~~~~~p~d 247 (280)
T PF13429_consen 237 LEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHSTT-
T ss_pred ccccccccccc
Confidence 99998877753
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-11 Score=113.86 Aligned_cols=207 Identities=17% Similarity=0.140 Sum_probs=158.5
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCC---CC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--C---H
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPL---RE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--S---T 137 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~---~ 137 (331)
.....|+++.|...|+..++...+. .+ +..+-.+|.+|.. .+++.+|+..|++|... | + +
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----LGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3456799999999999888874321 12 2334459999999 99999999999999864 3 3 3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-----CC--------------CccCHHHHHHHHHHHHHC-------CC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP-----AA--------------QPANAEEAVKLLYQASIA-------GH 191 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----~~--------------~~~~~~~A~~~~~~a~~~-------~~ 191 (331)
.++.+||..|...|++++|..++++|+++-.. .. ..+.+++|+.+|+++.+. .+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 56889999999999999999999999875222 11 678899999999988541 22
Q ss_pred ---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 020091 192 ---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 258 (331)
Q Consensus 192 ---~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 258 (331)
+....+||.+|.. .+.+++|.++|++|+.. +......+||..|.+.. .+.+|...|..+
T Consensus 364 ~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k----~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK----KYEEAEQLFEEA 435 (508)
T ss_pred hHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc----ccchHHHHHHHH
Confidence 4567799999987 78899999999999863 23567889999997743 555555555554
Q ss_pred H------HcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 259 A------DCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 259 ~------~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
. -.++ ...+.+|+.+|..+|++++|+.+.+++.+
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 3333 34667999999999999999999998874
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-10 Score=101.98 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
+.++...|..++- .||.-.|.+-|.+++... ++.-+..+|.+|....+.++....|.+|.++++.++
T Consensus 326 A~al~~~gtF~fL----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 326 AEALLLRGTFHFL----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHhhhhhhh----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 6778888888877 999999999999999986 444488999999999999999999999999998887
Q ss_pred ----CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Q 020091 172 ----QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 172 ----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g 243 (331)
..+++++|+.-|++++.. .+.-++..++-+..+ +..++++...|+.+... .-+..+...|.++..
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--- 474 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD--- 474 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---
Confidence 789999999999998776 566777777766554 56799999999999875 778889999999976
Q ss_pred ccccHHHHHHHHHHHHHcCCH------HH--HHHHHHHHh-ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcH
Q 020091 244 LPLSHRQARKWMKRAADCGHG------KA--QLEHGLGLF-TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR 314 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~~~~------~a--~~~Lg~~~~-~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~ 314 (331)
..++++|.+.|.+|++.... .+ ..+-|.+.. -.+|+.+|+..+++|++.++.--.....+....+.++++
T Consensus 475 -qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 475 -QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred -HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 55999999999999988543 22 222222222 257999999999999999986655566666667888999
Q ss_pred HHHHHHHHhhh
Q 020091 315 DRAMLVVDSWR 325 (331)
Q Consensus 315 ~~a~~~~~~~~ 325 (331)
++|+++|++-.
T Consensus 554 ~eAielFEksa 564 (606)
T KOG0547|consen 554 DEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998843
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.6e-11 Score=109.13 Aligned_cols=212 Identities=14% Similarity=0.055 Sum_probs=149.2
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------- 171 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 171 (331)
|..|..+.. .|+..+|+-.|+.|+..+ +.+|+..||.++...++-..||..+++++++++.+-
T Consensus 289 f~eG~~lm~----nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 289 FKEGCNLMK----NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHHh----cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 567888888 899999999999999986 999999999999999999999999999999987432
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-----C--CCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhc
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG-----V--DFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSF 240 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g-----~--~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~ 240 (331)
.++.-.+|+.++.+=+....+..+ +...-..+.. . ...+..-.++|..|+.. -+++.+..||.+|.-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 122222233222222211111111 1100001100 0 01122334455555433 478899999999964
Q ss_pred CCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchhcHHH
Q 020091 241 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDR 316 (331)
Q Consensus 241 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~~~~~ 316 (331)
.+.+++|+.+|+.|+.. .+...|+.||..+....+.++|+..|.+|++. ++..+.+|++.. .+..+..++
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS--~mNlG~ykE 516 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS--CMNLGAYKE 516 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh--hhhhhhHHH
Confidence 55999999999999877 45677889999999999999999999999987 667777776654 566777788
Q ss_pred HHHHHHhhhcCC
Q 020091 317 AMLVVDSWRAMP 328 (331)
Q Consensus 317 a~~~~~~~~~~~ 328 (331)
|..-+-+.+.++
T Consensus 517 A~~hlL~AL~mq 528 (579)
T KOG1125|consen 517 AVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHHhh
Confidence 877777766544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=97.10 Aligned_cols=120 Identities=11% Similarity=0.038 Sum_probs=97.7
Q ss_pred ccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccH
Q 020091 173 PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSH 248 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~ 248 (331)
..+.++++..+++++. ++++++++.||.+|.. .+++++|+..|++|+.. +++..+..+|.++....| ....
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g-~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG-QHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CCCc
Confidence 4444555555555443 3799999999999987 88999999999999875 789999999997533222 1247
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 249 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 249 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
++|...+++++.. .++.+++.||..++..|++++|+.+|+++++..+++
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999987 578999999999999999999999999999986654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-10 Score=95.71 Aligned_cols=185 Identities=15% Similarity=-0.016 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+..++.+|..+.. .+++++|+..|++++... ++ .+++.+|.+|...+++++|+..|+++++..+...
T Consensus 31 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-- 104 (235)
T TIGR03302 31 WPAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-- 104 (235)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC--
Confidence 467889999999988 899999999999998763 33 6789999999999999999999999998766321
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHC--CCHHH---HHHHHHHHhcCCCc
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG----VDFNLQEAARWYLRAAEG--GYVRA---MYNTSLCYSFGEGL 244 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g----~~~d~~~A~~~~~~A~~~--~~~~a---~~~lg~~y~~g~g~ 244 (331)
..+.+++.+|.++..-.+ ..+++++|++.|++++.. ++..+ +..++.++.
T Consensus 105 ----------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----- 163 (235)
T TIGR03302 105 ----------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----- 163 (235)
T ss_pred ----------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----
Confidence 123478888888865210 136788999999999875 23222 222222210
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhhhchhcHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-----TAADHVKNVILQQLSATSRDRAML 319 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-----~~a~~~l~~~~~~l~~~~~~~a~~ 319 (331)
........+|.+|+..|++++|+..|+++++..+ ..+..+++.++.. .++.++|..
T Consensus 164 -----------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~--lg~~~~A~~ 224 (235)
T TIGR03302 164 -----------------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK--LGLKDLAQD 224 (235)
T ss_pred -----------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH--cCCHHHHHH
Confidence 0112234666667777777777777777766521 2344454444443 444566666
Q ss_pred HHHhhhcCCC
Q 020091 320 VVDSWRAMPS 329 (331)
Q Consensus 320 ~~~~~~~~~~ 329 (331)
.++++...+|
T Consensus 225 ~~~~l~~~~~ 234 (235)
T TIGR03302 225 AAAVLGANYP 234 (235)
T ss_pred HHHHHHhhCC
Confidence 6666665555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-09 Score=105.18 Aligned_cols=244 Identities=10% Similarity=-0.007 Sum_probs=163.2
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDK 152 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~ 152 (331)
.....|++.+|+.++.+.++..|+ ++.+++.|+.+|.. .++.++|++.++++.... .......++.++...++
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcch
Confidence 445668888888888888887665 57777777788877 788888888888887764 22222444555544566
Q ss_pred HHHHHHHHHHHHHcCCCCC-------------------------------------------------------------
Q 020091 153 KEAAISLYRQAAVLGDPAA------------------------------------------------------------- 171 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~------------------------------------------------------------- 171 (331)
..+|+..|+++++..|...
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 6669999999988877665
Q ss_pred --------------------------------------------------------------------------CccCHH
Q 020091 172 --------------------------------------------------------------------------QPANAE 177 (331)
Q Consensus 172 --------------------------------------------------------------------------~~~~~~ 177 (331)
..+.++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 334444
Q ss_pred HHHHHHHHHHHCC------C--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----------------CCHHHHH
Q 020091 178 EAVKLLYQASIAG------H--VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----------------GYVRAMY 232 (331)
Q Consensus 178 ~A~~~~~~a~~~~------~--~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----------------~~~~a~~ 232 (331)
+|+.+|+.++... . ......|-..|.. .+++++|..++.+..+. +...+..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld----~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE----SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 5555555443321 0 1111223333333 44555555555555431 1123344
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLS 310 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~ 310 (331)
.++.++.. .++..+|.+.+++.+.. ++...+..+|.++...|...+|..+++.+....+.+.....+.+...+.
T Consensus 421 l~a~~~~~----~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 421 LLVQSLVA----LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 44554433 34788888888887766 6777888888888889999999999988777777666666777777788
Q ss_pred hhcHHHHHHHHHhhhcCCCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.++.+++..+.+++.++.|+|
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCc
Confidence 888899998998888888875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-10 Score=104.26 Aligned_cols=210 Identities=17% Similarity=0.109 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------CCHH--H-HHHHHHHHhcCCCHHHHHHHHHHHHHc-----
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTL--A-MVDAGLMYWEMDKKEAAISLYRQAAVL----- 166 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~--a-~~~lg~~~~~~~~~~~A~~~~~~a~~~----- 166 (331)
.++..|+.+|.. .+++++|+.+++.|++. .++. . +.++|.+|...+++.+|+..|++|+..
T Consensus 200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 357779999999 99999999999999987 3433 3 345999999999999999999999865
Q ss_pred CCCCC--------------CccCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 167 GDPAA--------------QPANAEEAVKLLYQASIA-------GH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 167 ~~~~~--------------~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
|.... ..+++.+|..++++|++- .+ +..+.+++.++.. .+.+++|..+|+++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKA 351 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHH
Confidence 32222 779999999999998651 22 3456678888876 78899999999999
Q ss_pred HHC-------CC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHHhccCCHHH
Q 020091 223 AEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----G-----HGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 223 ~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+. .+ +.-..+||.+|.. .+.+.+|.++|++|+.. + ......+||..|...+++.+
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 652 22 4457799999976 55999999999999864 1 13456789999999999888
Q ss_pred HHHHHHHHHHc------C---CHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 283 AVVYLELATRA------G---ETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 283 A~~~~~~A~~~------~---~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
|...|.++..+ + -.....||+.++..+. +.++|.++.+++.
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g--~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG--NYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc--cHHHHHHHHHHHH
Confidence 88888877764 2 2446778888887664 5568887777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-09 Score=97.25 Aligned_cols=203 Identities=13% Similarity=-0.017 Sum_probs=130.7
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--------------
Q 020091 108 GKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------------- 171 (331)
Q Consensus 108 G~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------- 171 (331)
+.++.. .+++++|...+++..+.. ++.+...++.+|...|+.++|+..+.+.........
T Consensus 160 a~l~l~----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 160 VRIQLA----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 455555 455555555555555442 555555555555555555555555555544332211
Q ss_pred -----CccCHHHHHHHHHHH--HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCC
Q 020091 172 -----QPANAEEAVKLLYQA--SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g 243 (331)
...+.+....+++.. ....++.+...++..+.. .++.++|...++++.+.. +.......+.+.
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~----- 306 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK----- 306 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc-----
Confidence 000001111111111 112577788888888876 789999999999998853 443333444432
Q ss_pred ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhchhcHHHHHHH
Q 020091 244 LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD-HVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~-~~l~~~~~~l~~~~~~~a~~~ 320 (331)
..+.++++...++..+. +++...+.+|.++...+++++|..+|+++++..+.... ..++.++... ++.++|.+.
T Consensus 307 -~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~--g~~~~A~~~ 383 (398)
T PRK10747 307 -TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL--HKPEEAAAM 383 (398)
T ss_pred -CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 24889999999988776 66788899999999999999999999999998765544 6777777654 556788888
Q ss_pred HHhhhc
Q 020091 321 VDSWRA 326 (331)
Q Consensus 321 ~~~~~~ 326 (331)
+++-+.
T Consensus 384 ~~~~l~ 389 (398)
T PRK10747 384 RRDGLM 389 (398)
T ss_pred HHHHHh
Confidence 888654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-11 Score=104.63 Aligned_cols=221 Identities=22% Similarity=0.214 Sum_probs=138.0
Q ss_pred ccCCchHHHhHHHHHHHHHHh----CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----CC----CHHHHHH
Q 020091 75 SFTLPQLRAASLVCKSWNDAL----RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RG----STLAMVD 142 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----~~----~~~a~~~ 142 (331)
++-.++|.+|++....-+..+ -..|.+.+.-+||.++.- .|.+++|+.+-.+-++ +| ...|+||
T Consensus 65 yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYN 140 (639)
T KOG1130|consen 65 YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYN 140 (639)
T ss_pred hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhh
Confidence 344555555555444332222 223566666666666666 5666666555544332 22 3456666
Q ss_pred HHHHHhcCC--------------------CHHHHHHHHHHHHHc----CCCC-------------CCccCHHHHHHHHHH
Q 020091 143 AGLMYWEMD--------------------KKEAAISLYRQAAVL----GDPA-------------AQPANAEEAVKLLYQ 185 (331)
Q Consensus 143 lg~~~~~~~--------------------~~~~A~~~~~~a~~~----~~~~-------------~~~~~~~~A~~~~~~ 185 (331)
||.+|...| .++.|+++|..-+++ ++.. -..+|+..|+..-+.
T Consensus 141 lgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~ 220 (639)
T KOG1130|consen 141 LGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKL 220 (639)
T ss_pred hhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHH
Confidence 666665532 234445555443332 1111 045666666554333
Q ss_pred ----HHHCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH----HCCC----HHHHHHHHHHHhcCCCccccHH
Q 020091 186 ----ASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAA----EGGY----VRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 186 ----a~~~~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~----~~~~----~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
|-+.|+ -.|+.|||++|.- .++++.|+++|+++. +.|+ +.++|.||..|.- .++++
T Consensus 221 RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~e~~ 292 (639)
T KOG1130|consen 221 RLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LKEVQ 292 (639)
T ss_pred HHHHHHHhhhHHHHHHhhcccchhhhh----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HHHHH
Confidence 223344 4578899999976 789999999999874 4454 6779999999976 56899
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHh
Q 020091 250 QARKWMKRAAD--------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA----G----ETAADHVKNVILQ 307 (331)
Q Consensus 250 ~A~~~~~~a~~--------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~----~~~a~~~l~~~~~ 307 (331)
+|+.|+.+=+. .|...+|+.||..|...|+.++|+.|.++..+. + ...+..|+.....
T Consensus 293 kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~ 366 (639)
T KOG1130|consen 293 KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLIL 366 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence 99999987332 266789999999999999999999998887753 2 3345555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-09 Score=97.27 Aligned_cols=242 Identities=12% Similarity=-0.005 Sum_probs=158.3
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+..+......|+++.|...+.+..+..++.+ .......+.++.. .+++++|...++...+.. ++.++..++.+
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLA----QNELHAARHGVDKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4444445666788877666666555444321 1233334777777 788888888888777763 77788888888
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCc---------------cCHHHHHHHHHHHHH------CCCHHHHHHHHHHHhcC
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAAQP---------------ANAEEAVKLLYQASI------AGHVRAQYQLALCLHRG 205 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------~~~~~A~~~~~~a~~------~~~~~a~~~lg~~y~~G 205 (331)
+...||.++|+..+.+..+.+...... ...+++...+.++.+ ..++.....++..+..
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~- 275 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID- 275 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH-
Confidence 888888888888888877664332200 001111112222222 1477888899998876
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHH--HHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCH--HHHHHHHHHHhcc
Q 020091 206 RGVDFNLQEAARWYLRAAEG--GYVRAM--YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG--KAQLEHGLGLFTE 277 (331)
Q Consensus 206 ~g~~~d~~~A~~~~~~A~~~--~~~~a~--~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~--~a~~~Lg~~~~~~ 277 (331)
.+++++|.+.++++++. ++.... ......... +.+..++...++++.+. +++ .....||++++..
T Consensus 276 ---~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 276 ---CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred ---CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc
Confidence 78999999999999985 333211 112122222 34788999999998877 566 5667899999999
Q ss_pred CCHHHHHHHHHH--HHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 278 GEMMKAVVYLEL--ATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 278 ~~~~~A~~~~~~--A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
|++++|..+|++ +.+..+ ......++.++.++ ++.++|.+++++.+
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~A~~~~~~~l 397 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAEAAAMRQDSL 397 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 999999999994 655432 33344666666555 55678888888743
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-09 Score=92.20 Aligned_cols=239 Identities=15% Similarity=0.080 Sum_probs=180.4
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhc
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWE 149 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~ 149 (331)
+-+.+.+.|+..+.+..+..+ ..-++...||.+|.+ .|..++|+..-+-..+.- -..|.+.||.-|..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 344566778777777777543 467889999999999 899999999988777653 23578899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCCHH-----HHH--HHHHHHhcCCCCCCC
Q 020091 150 MDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGHVR-----AQY--QLALCLHRGRGVDFN 211 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~~~-----a~~--~lg~~y~~G~g~~~d 211 (331)
-|=++.|...|...++.+.-.. ..++.+||+..-++.+..+.-. |+| .|+..+.. ..|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~ 195 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSD 195 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhh
Confidence 9999999999999887543221 7888999999988877764333 322 45555543 788
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVY 286 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~ 286 (331)
.++|..++.+|++. ....+-..+|.++.. .| ++++|++.++...+++. +.....|-.+|...|+.++...|
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELA-KG---DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHh-cc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999876 567788899999964 44 99999999999999865 56778899999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 287 LELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 287 ~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.++.+... ..+...+..+..... -.+.|...+.+-++++|+
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~--G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQE--GIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhh--ChHHHHHHHHHHHhhCCc
Confidence 999998754 344444444444333 334566666665566664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-10 Score=89.03 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
+|...+.+|..+.. .|++++|+.+|++++... ++.+++++|.++...|++++|+.+|++++.+++
T Consensus 23 ~p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------- 89 (144)
T PRK15359 23 DPETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------- 89 (144)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 34456677888888 888999999999888774 888888899988888888888888888888776
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+++.+++++|.++.. .+++++|+..|++|+.. +++..+.+.|.+.
T Consensus 90 ------------~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 ------------SHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred ------------CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 588888999988886 78889999999988765 6677776666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-09 Score=92.69 Aligned_cols=183 Identities=9% Similarity=-0.050 Sum_probs=125.0
Q ss_pred CCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH-
Q 020091 62 ASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST- 137 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~- 137 (331)
...+...+..+...+..|++.+|...+...++..++.. ...+++.+|.+|.. .+++++|+..|+++++.. ++
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCCc
Confidence 34455667777888899999999999988888776543 23688999999999 899999999999999763 33
Q ss_pred --HHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 138 --LAMVDAGLMYWEM--------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 138 --~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
.+++.+|.++... +++++|+..|++++...+... .. ..+...++.++..
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~---------------~~a~~~~~~~~~~--- 164 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE---YA---------------PDAKKRMDYLRNR--- 164 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh---hH---------------HHHHHHHHHHHHH---
Confidence 4789999999875 567777777777776654311 00 1122222222110
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhccCCHHH
Q 020091 208 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~~~~~ 282 (331)
. ......+|.+|.. .+++.+|+.+|+++++.. .+.+++.+|.++...|++++
T Consensus 165 ----~---------------~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 165 ----L---------------AGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred ----H---------------HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 0 1122456666654 337777777777776651 24677888888888888888
Q ss_pred HHHHHHHHHH
Q 020091 283 AVVYLELATR 292 (331)
Q Consensus 283 A~~~~~~A~~ 292 (331)
|..+++....
T Consensus 222 A~~~~~~l~~ 231 (235)
T TIGR03302 222 AQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHh
Confidence 8887776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-08 Score=99.67 Aligned_cols=240 Identities=10% Similarity=-0.018 Sum_probs=110.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (331)
..|+++.|..++....+... ..+..++..|-..|.. .+++++|++.|......| +...+..|-..|.+.|+.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCAR----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 44556666555444433322 1245555555555555 566666666666555544 344455555555555555
Q ss_pred HHHHHHHHHHHHcCC---CCC-----------CccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc-C----------
Q 020091 154 EAAISLYRQAAVLGD---PAA-----------QPANAEEAVKLLYQASIAG---HVRAQYQLALCLHR-G---------- 205 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~---~~~-----------~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~-G---------- 205 (331)
++|..+|.+....+. ++. ..+++++|..+|++..+.| +...+..+...|.. |
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555555543210 110 4445555555555544433 23334444444433 0
Q ss_pred --------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-
Q 020091 206 --------------------RGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 261 (331)
Q Consensus 206 --------------------~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 261 (331)
.+..+++++|.+.|....+.| +...+..|..+|.. .++.++|...|++....
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Confidence 000344444444444444433 33444444444433 22555555555554332
Q ss_pred --CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 262 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 262 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.+...+..|...|...|++++|+.+|++..+.|- ++.......+......++.++|..++.+.+
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2334444455555555555555555555544431 111222222223333445555555555543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-08 Score=99.78 Aligned_cols=237 Identities=11% Similarity=-0.038 Sum_probs=163.2
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMD 151 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~ 151 (331)
....|+++.|..++....+.... .+...+..|-..|.. .++.++|.+.|++..+.| +..++..|-..|.+.|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k----~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAK----SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 45679999998888776665443 477888888888888 899999999999999876 6788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASIA-----GHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
+.++|+.+|.+....+.... ..+++++|..+|.+.... .+...+..|-.+|.. .+++++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k----~G~lde 597 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN----AGQVDR 597 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----CCCHHH
Confidence 99999999999887654333 788999999999998652 255667777777765 678999
Q ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 215 AARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 215 A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
|.+.|+...+.| +...+..+...|.+ .++.++|...|......| +...+..|...|...|++++|+..++
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999888765 45566666666654 336666666666665543 23344455555555666666666666
Q ss_pred HHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 289 LATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 289 ~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
...+.|. ++.......+......++.++|.+++++.
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6555442 11122222222233344445555555544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-08 Score=100.02 Aligned_cols=256 Identities=9% Similarity=-0.047 Sum_probs=174.7
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD 142 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 142 (331)
+......+...+..|++..|+..+.+.++..+. ++.+.+.+..++.. .++.++|+.++++++.-. ...++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 445677777889999999999888888887664 33334467777766 799999999999999654 4445555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCC
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d 211 (331)
+|.++...|++++|+.+|+++++..+... ..++.++|+..++++....-. ....++..|... + .++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~-~-~~~ 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNR-A-TDR 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHH-h-cch
Confidence 58899999999999999999999988776 678888899888888765322 222255555431 1 455
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhc-C-----------------------------------------------
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSF-G----------------------------------------------- 241 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~-g----------------------------------------------- 241 (331)
..+|++.|+++++. ++......+-..+.. |
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 65688888888764 222222222111100 0
Q ss_pred ----------------C---------------------CccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHH
Q 020091 242 ----------------E---------------------GLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 242 ----------------~---------------------g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~ 281 (331)
. ...+++.+++..|+..-..+ +.-+...+|..|...+..+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0 00123334444444433233 2345667888888899999
Q ss_pred HHHHHHHHHHHcC------CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 282 KAVVYLELATRAG------ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 282 ~A~~~~~~A~~~~------~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+|...|+.++... +.+.....++++..++.++.++|..++++++...|
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9999999997753 22333346788999999999999999999987555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-08 Score=90.27 Aligned_cols=201 Identities=9% Similarity=-0.112 Sum_probs=153.9
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~ 153 (331)
..+...+|+..+.+.++..|+ +..+++..|.++.. .+ ++++++.++.+++..+ +..++++.+.++...++.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~----L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEA----LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHH----cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 456778998888888887664 78888889988877 45 6899999999998765 778899999888776653
Q ss_pred --HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHH
Q 020091 154 --EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVR 229 (331)
Q Consensus 154 --~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~ 229 (331)
++++.++.++++.++ .+..|+.+.|.++.. .++++++++++.++++. .+..
T Consensus 123 ~~~~el~~~~kal~~dp---------------------kNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 123 AANKELEFTRKILSLDA---------------------KNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred hhHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchh
Confidence 667777778777765 588899999998876 67799999999999875 6788
Q ss_pred HHHHHHHHHhcC---CCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcC--CHHH
Q 020091 230 AMYNTSLCYSFG---EGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAG--ETAA 298 (331)
Q Consensus 230 a~~~lg~~y~~g---~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~--~~~a 298 (331)
+++..|.++... .+.....++++.+..+++.. .+..+++.++.++.. .++..+|..++.++...+ +..|
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 899999887553 22233456788888888876 567888888888877 345677888888877653 4556
Q ss_pred HHHHHHHHhh
Q 020091 299 DHVKNVILQQ 308 (331)
Q Consensus 299 ~~~l~~~~~~ 308 (331)
...+..++..
T Consensus 258 l~~l~d~~~~ 267 (320)
T PLN02789 258 LSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=101.46 Aligned_cols=239 Identities=18% Similarity=0.090 Sum_probs=171.8
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCC-C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--------hCCCHHHHHH
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPL-R-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------ARGSTLAMVD 142 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--------~~~~~~a~~~ 142 (331)
-.+...|+...-+..++..++..-+. . -...+..||..|+. .+||++|++|-.--+ ..|.+.+.-|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 34667788887766665555543221 0 24468889999999 999999999866332 2367788899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----CCCCC---------------------------------CccCHHHHHHHHHH
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVL----GDPAA---------------------------------QPANAEEAVKLLYQ 185 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~----~~~~~---------------------------------~~~~~~~A~~~~~~ 185 (331)
||+.+...|++++|+.++.+-+++ |+... +...++.|+++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 999999999999999998876543 21111 44556777777776
Q ss_pred HHH----CCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHhcCCCccccHH
Q 020091 186 ASI----AGHV----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----GGY----VRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 186 a~~----~~~~----~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~~----~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
-++ .|+. .++-+||+.|.- .+|++.|+.+-+.-++ -|+ -.|..+||.++.- ..+++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe 252 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFE 252 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccH
Confidence 543 3443 355677777763 8999999988776433 355 3567899999965 55999
Q ss_pred HHHHHHHHHH----HcCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhchhc
Q 020091 250 QARKWMKRAA----DCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR--------AGETAADHVKNVILQQLSATS 313 (331)
Q Consensus 250 ~A~~~~~~a~----~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~--------~~~~~a~~~l~~~~~~l~~~~ 313 (331)
.|+++|+++. +.|+ ...+|.||..|.-..++++|+.|..+-+. +|...++..++..+..+-.
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~-- 330 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE-- 330 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--
Confidence 9999999864 4465 46789999999999999999999876543 3678889888888876644
Q ss_pred HHHHHHHHHhhh
Q 020091 314 RDRAMLVVDSWR 325 (331)
Q Consensus 314 ~~~a~~~~~~~~ 325 (331)
.++|+..+..-+
T Consensus 331 h~kAl~fae~hl 342 (639)
T KOG1130|consen 331 HRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHH
Confidence 456766655533
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=85.85 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=96.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
..+|++++.. +|...+.+|..+.. .+++++|+.+|++++.. .+..+++++|.++.. .+++++|+.+|.+
T Consensus 13 ~~~~~~al~~-~p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV-DPETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----LKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 3456666655 34457788998876 88999999999999876 678999999999976 5599999999999
Q ss_pred HHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Q 020091 258 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVIL 306 (331)
Q Consensus 258 a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~l~~~~ 306 (331)
++.. +++.+++++|.++...|++++|+..|++|++..+. ....+.+.+.
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9987 67899999999999999999999999999987654 4444444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-08 Score=85.03 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------------CccCHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------QPANAEEAV 180 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~A~ 180 (331)
..+.++|+..|...++.. ..++.+.||++|.+.|..+.||..-+...+..+-.. ..+-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 789999999999998865 678899999999999999999999888776644333 667788899
Q ss_pred HHHHHHHHCC-C-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHH-------HHHHHHhcCCCccccHHHH
Q 020091 181 KLLYQASIAG-H-VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY-------NTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 181 ~~~~~a~~~~-~-~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~-------~lg~~y~~g~g~~~~~~~A 251 (331)
..|...++.+ . ..|.-.|-.+|.. .+++.+|++.-++.+..+...-.. .|+..+.. ..|.++|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A 199 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRA 199 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHH
Confidence 9999988853 3 5678889999986 899999999999988876544333 44444433 5699999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 252 RKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET---AADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 252 ~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~---~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+.++.+|.+.+ ...+-..||.++...|++++|++.++++.+.++. .....|...+.++ ++.++....+.+..+
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l--g~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL--GKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 99999998874 5678889999999999999999999999998763 2333333444433 445566666655544
Q ss_pred C
Q 020091 327 M 327 (331)
Q Consensus 327 ~ 327 (331)
.
T Consensus 278 ~ 278 (389)
T COG2956 278 T 278 (389)
T ss_pred c
Confidence 3
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-08 Score=97.45 Aligned_cols=207 Identities=13% Similarity=-0.041 Sum_probs=122.7
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM 150 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~ 150 (331)
.....|++.+|..++........-..+..++..+-..+.. .++.+.|.+.+......| ++..+..|..+|.+.
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3456688888887775444332223456666666666666 677888888887777665 455666777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHHCCC------------------------------
Q 020091 151 DKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASIAGH------------------------------ 191 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~------------------------------ 191 (331)
|+.++|...|.+..+.+ ... ..+++++|+.+|++..+.|.
T Consensus 172 g~~~~A~~lf~~m~~~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 172 GMLIDARRLFDEMPERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CCHHHHHHHHhcCCCCC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77777777776653210 011 55677777777776654331
Q ss_pred --------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-
Q 020091 192 --------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG- 262 (331)
Q Consensus 192 --------~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 262 (331)
..++..|-.+|.. .++.++|.+.|.+..+ .+..++..+...|.. .++.++|...|++....|
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMPE-KTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Confidence 1122233333433 4566677666665432 355566666666644 336677777776665543
Q ss_pred --CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 263 --HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 263 --~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+...+..+...+...|++++|...+....+.|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 34445555555666666666666666666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-07 Score=88.85 Aligned_cols=246 Identities=8% Similarity=-0.028 Sum_probs=129.4
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCC-CCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHhCC-CH-HHH-HHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWG-KRFKHGRGVRKNLDKALDSFLKGAARG-ST-LAM-VDA 143 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~LG-~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~-~a~-~~l 143 (331)
+......+..|++..|. +.....++. .++...+.++ .+... .++++.|.++|.+|.+.. +. .+. ...
T Consensus 88 ~~~gl~a~~eGd~~~A~----k~l~~~~~~~~~p~l~~llaA~aA~~----~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 88 TEQALLKLAEGDYQQVE----KLMTRNADHAEQPVVNYLLAAEAAQQ----RGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHhCCCHHHHH----HHHHHHHhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 33444455677777774 333333332 2345555553 33355 677888888888777653 22 222 234
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHH------HHHHHHhc
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQY------QLALCLHR 204 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~------~lg~~y~~ 204 (331)
+.++...|++++|+..+++..+..|... ..++.++|+..+.+..+.. ++.... .++.+-..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888887777766443 4455555555555554432 111111 01111100
Q ss_pred CCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHH
Q 020091 205 GRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~--~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~ 281 (331)
. ...+.+....+++... ..+++.+...++..+.. .++.++|...++++.... ++.....++. ...++.+
T Consensus 240 ~--~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~ 311 (398)
T PRK10747 240 M--ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPE 311 (398)
T ss_pred H--HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChH
Confidence 0 0122222223222221 12455566666666644 336677777776666542 2222222222 2346667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 282 KAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 282 ~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+++...++..+..+.++...+......+..++..+|.+.+++..+..|+
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7777777666666555555555555556666666777777776666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-09 Score=87.49 Aligned_cols=119 Identities=16% Similarity=0.085 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.++.++++..|++++..+ ++++++.||.+|...+++++|+..|++++.+.+ +++.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P---------------------~~~~~~ 110 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG---------------------ENAELY 110 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------CCHHHH
Confidence 577788888888888764 888888888888888888888888888888876 478888
Q ss_pred HHHHHHH-hc-CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH
Q 020091 196 YQLALCL-HR-GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 264 (331)
Q Consensus 196 ~~lg~~y-~~-G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 264 (331)
.++|.++ .. | ..++++|...++++++. ++..+++++|..+.. .+++++|+.+|+++++...+
T Consensus 111 ~~lA~aL~~~~g---~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 111 AALATVLYYQAG---QHMTPQTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 8888864 33 2 22368888888888765 678888888888866 44888888888888877443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-08 Score=89.33 Aligned_cols=186 Identities=12% Similarity=-0.046 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA- 171 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~- 171 (331)
+..+.++..+|.++.. .++.+.|...+.++... +..+..+..|.++...+++++|+.+++++++..|...
T Consensus 3 p~~~~a~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 3 PDFALGHAAAALLLLL----GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CccHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 4466777777777766 46666666666665543 2344556667777777777777777777776654332
Q ss_pred -------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Q 020091 172 -------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT 234 (331)
Q Consensus 172 -------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~l 234 (331)
..+....+...+..... .+...+...+|.++.. .+++++|+..++++++. +++.++..+
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 01112222222222111 2345667788888886 78899999999999876 567788999
Q ss_pred HHHHhcCCCccccHHHHHHHHHHHHHcCC--H----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 235 SLCYSFGEGLPLSHRQARKWMKRAADCGH--G----KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 235 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
|.+|.. .+++++|..++.++..... + ..+..+|.++...|++++|+.+|+++....+
T Consensus 155 a~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 155 AHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 999976 4499999999999987632 2 2456799999999999999999999975543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-08 Score=96.25 Aligned_cols=234 Identities=10% Similarity=0.003 Sum_probs=156.9
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (331)
+.|++++|..++ +.... .+..++..|...|.. .++.++|++.|++..+.| +..++..+...+.+.|+.
T Consensus 271 k~g~~~~A~~vf----~~m~~-~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 271 KCGDIEDARCVF----DGMPE-KTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HCCCHHHHHHHH----HhCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 457777775444 33332 477788888888888 789999999998887766 566777888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
++|.+.+....+.+.... ..+++++|...|.+..+. +..++..|...|.. .++.++|++.|++
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~----~G~~~~A~~lf~~ 416 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGN----HGRGTKAVEMFER 416 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 889888888888764433 578888888888876554 56677777777765 6778888888888
Q ss_pred HHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-C---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 222 AAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-G---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 222 A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
..+.| +...+..+-..+.+ .++.++|..+|....+. | +...+..+...|...|++++|...+++.--.
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~- 491 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK- 491 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-
Confidence 87664 33344444444433 33778888888777653 2 2345566777777778888887777654211
Q ss_pred CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 295 ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 295 ~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++...+-..+......++.+.+...++++.+..|.
T Consensus 492 -p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 492 -PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 12222333333344555666666666666655553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=98.27 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
.+++++++||.+....|++++|..+++.++++.| ++..|..+++.++.. .+.+++
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---------------------d~~~a~~~~a~~L~~----~~~~ee 138 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---------------------DSSEAFILMLRGVKR----QQGIEA 138 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---------------------CcHHHHHHHHHHHHH----hccHHH
Confidence 3688999999999999999999999999888877 588899999988876 778999
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|+.++++++.. .++.+++.+|.++.. .| .+++|...|++++.. ++..++..+|.++...|+.++|...|++|
T Consensus 139 A~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g---~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 139 GRAEIELYFSGGSSSAREILLEAKSWDE-IG---QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH-hc---chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998765 678888999998854 34 899999999998865 45788899999999999999999999999
Q ss_pred HHc
Q 020091 291 TRA 293 (331)
Q Consensus 291 ~~~ 293 (331)
++.
T Consensus 215 ~~~ 217 (694)
T PRK15179 215 LDA 217 (694)
T ss_pred HHh
Confidence 875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-07 Score=88.67 Aligned_cols=253 Identities=9% Similarity=-0.064 Sum_probs=158.2
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCH--HHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GST--LAMVDAG 144 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~--~a~~~lg 144 (331)
.+..+...+..|++..|.....+..+..+ .....+...|.++.. .+++++|.++|.++.+. ++. .+....+
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~----~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQ----RGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 35556667888999999766655444432 234555666888888 89999999999998875 333 3445568
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d 211 (331)
.++...|++++|...+++..+..|... ..+|+++|+..+.+..+.+ ++.....+-.....|.-....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999877655 6777777777777776652 222211111111000000111
Q ss_pred HHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHH----HHHHHHHHhccCCHH
Q 020091 212 LQEAARWYLRAAEG------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA----QLEHGLGLFTEGEMM 281 (331)
Q Consensus 212 ~~~A~~~~~~A~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a----~~~Lg~~~~~~~~~~ 281 (331)
.+++...+.++.+. +++.....++..+.. .+++++|...++++.+....+. ..-........++.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 22233344444332 366777777777754 3478888888888877532222 122233334457778
Q ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHhhhchhcHHHHHHHHH--hhhcCCCC
Q 020091 282 KAVVYLELATRAGETAA--DHVKNVILQQLSATSRDRAMLVVD--SWRAMPSL 330 (331)
Q Consensus 282 ~A~~~~~~A~~~~~~~a--~~~l~~~~~~l~~~~~~~a~~~~~--~~~~~~~~ 330 (331)
++...++++.+..+.++ ..........+..++..+|.+.++ ...+.+|+
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 88888888887755444 555555555566777788888888 34455554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-07 Score=91.37 Aligned_cols=222 Identities=15% Similarity=0.078 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--------
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------- 171 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------- 171 (331)
..+...+...+- .||++.|.+.+...+.+. ++.+++.||.+|...||.+++..+...|+.+++...
T Consensus 140 ~~ll~eAN~lfa----rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFA----RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 345555555555 799999999999999986 899999999999999999999999999999988776
Q ss_pred ---CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HHH------HHHHHHHHh
Q 020091 172 ---QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRA------MYNTSLCYS 239 (331)
Q Consensus 172 ---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~-~~a------~~~lg~~y~ 239 (331)
..+++.+|.-||.+|+.. .+.+-.++-..+|.+ .|+..+|...|.+...... .+. -...+..+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 788899999999999876 456777788888887 7889999999999877533 000 001011110
Q ss_pred c-----------------CCC--c-------------cccHHHHHHHHHHHHH---------------------------
Q 020091 240 F-----------------GEG--L-------------PLSHRQARKWMKRAAD--------------------------- 260 (331)
Q Consensus 240 ~-----------------g~g--~-------------~~~~~~A~~~~~~a~~--------------------------- 260 (331)
. +.+ . .+.+++|......-..
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 0 000 0 0111111111111100
Q ss_pred ----------------------------------c-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCHHHHH
Q 020091 261 ----------------------------------C-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-GETAADH 300 (331)
Q Consensus 261 ----------------------------------~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~~~a~~ 300 (331)
. ..++-++.++..|.+.|++.+|+.+|..+... ++..+..
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 0 11233567888899999999999999999875 4455666
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
++......+..++.++|++.+.+++...|.|
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 6666677777788899999999999999986
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.2e-09 Score=81.56 Aligned_cols=97 Identities=18% Similarity=0.030 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.-+..|.+|..+.+ .|+++.|...|+..+..+ ++..+++||.++...|++++|+..|.+|+.+++
T Consensus 34 ~l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--------- 100 (157)
T PRK15363 34 PLNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--------- 100 (157)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 46778899988888 899999999999988776 788899999999999999999999999998876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.||.. .++.+.|.+.|+.|+..
T Consensus 101 ------------ddp~~~~~ag~c~L~----lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 101 ------------DAPQAPWAAAECYLA----CDNVCYAIKALKAVVRI 132 (157)
T ss_pred ------------CCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 689999999999987 78899999999999764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-07 Score=84.99 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=47.6
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHh
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYW 148 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~ 148 (331)
+....+..|++++|+..|...+...+. |...+.+-.-+|.. .++|++|..--.+..+.. -+.++..+|..+.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 334455556666665555555544432 33333334444444 455555555555555543 3445555555555
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 020091 149 EMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~ 169 (331)
-.|++++|+..|.+.++..+.
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~ 102 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPS 102 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCc
Confidence 555555555555555544433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.6e-08 Score=95.04 Aligned_cols=129 Identities=12% Similarity=-0.007 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++++++.||.+..+ .+.+++|..+++.+++. ++..+..+++.++.+.+.+++|+.++++++...+
T Consensus 85 ~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--------- 151 (694)
T PRK15179 85 TELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--------- 151 (694)
T ss_pred cHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC---------
Confidence 69999999999999 99999999999999987 5999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.+++.+|.++.. .+++++|+..|++++.. +++.++.++|.++.. ..+.++|...|
T Consensus 152 ------------~~~~~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~ 211 (694)
T PRK15179 152 ------------SSAREILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVL 211 (694)
T ss_pred ------------CCHHHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 589999999999987 78899999999999965 568999999999965 34999999999
Q ss_pred HHHHHc
Q 020091 256 KRAADC 261 (331)
Q Consensus 256 ~~a~~~ 261 (331)
++|++.
T Consensus 212 ~~a~~~ 217 (694)
T PRK15179 212 QAGLDA 217 (694)
T ss_pred HHHHHh
Confidence 999887
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=95.02 Aligned_cols=197 Identities=10% Similarity=0.055 Sum_probs=140.0
Q ss_pred hHHHHHHHHhcc-CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHH-----------------H
Q 020091 65 PFDVLNKIAASF-TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKAL-----------------D 126 (331)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~-----------------~ 126 (331)
.++.+..+...+ ..++++++..+|...++..++ ...+++.+|.+|++ .+++.++. +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q----~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLS----RRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHh----hcchhhhhhhhhhhhcccccchhHHH
Confidence 345555555555 889999999999987777654 68899999999887 45544443 3
Q ss_pred HHHHHH-hCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 127 SFLKGA-ARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 127 ~~~~A~-~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
+|...+ +.+ +..|++.||.||.+.|+.++|+..|+++++.++ .++.++.++|..|..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~---------------------~n~~aLNn~AY~~ae 162 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR---------------------DNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc---------------------ccHHHHHHHHHHHHH
Confidence 333222 222 447999999999999999999999999999986 699999999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCHHHHH-HHHHHHhcCCCccccHHHHHHHHHHHHHc-C---CHHHHHHHHHHH
Q 020091 205 GRGVDFNLQEAARWYLRAAEG-----GYVRAMY-NTSLCYSFGEGLPLSHRQARKWMKRAADC-G---HGKAQLEHGLGL 274 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~~~-----~~~~a~~-~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~~ 274 (331)
. |.++|++++.+|+.. .+....- +...|-.. +.+.+.-....++.... + ..+.+.-|=.+|
T Consensus 163 ----~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~----~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 163 ----E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYN----SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred ----h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcC----cccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 5 999999999999864 1222211 22223222 33455545555544433 2 134445566778
Q ss_pred hccCCHHHHHHHHHHHHHcCCHH
Q 020091 275 FTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 275 ~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
...+++++++.+++.+++..+.+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcc
Confidence 88999999999999999886543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-08 Score=78.60 Aligned_cols=99 Identities=20% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+.+.+|..+.. .+++++|..+|++++..+ ++.+++++|.++...+++++|+.+|++++..++
T Consensus 15 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-------- 82 (135)
T TIGR02552 15 EQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-------- 82 (135)
T ss_pred hhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 356778888888887 788888888888887753 778888888888888888888888888877765
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.++..++++|.+|.. .+++++|+.+|+++++.+
T Consensus 83 -------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 -------------DDPRPYFHAAECLLA----LGEPESALKALDLAIEIC 115 (135)
T ss_pred -------------CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Confidence 477888888888876 678888888888887753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-08 Score=78.89 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=84.9
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
+..-+..++..|++++|..++.-.....+ .++..+++||.++.. .+++++|+..|.+|+.. ++|.+++++|.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45566678899999999988887777755 489999999999999 99999999999999876 59999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
|+...|+.+.|+..|+.++....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-08 Score=77.82 Aligned_cols=100 Identities=19% Similarity=0.116 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHH
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK 265 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 265 (331)
++..+.+.+|.++.. .+++++|.++|++++.. ++..+++.+|.+|.. .+++++|..+|++++.. .++.
T Consensus 15 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 86 (135)
T TIGR02552 15 EQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYALAAALDPDDPR 86 (135)
T ss_pred hhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCChH
Confidence 578889999999986 78999999999999774 678899999999976 45899999999999877 4578
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.++.+|.++...|++++|+.+|+++++.++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 87 PYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999987644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-07 Score=82.69 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--
Q 020091 194 AQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-- 262 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 262 (331)
.+.++|.+|.. . +|+++|+++|++|++. |. ......+|.++.. .+++++|+..|++.+..-
T Consensus 116 ~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 116 CLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhc
Confidence 34455555554 3 4555555555555442 21 1223344444433 225555555555554320
Q ss_pred C----H---HHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhhhchhcHHHHHHHH
Q 020091 263 H----G---KAQLEHGLGLFTEGEMMKAVVYLELATRAG----ETAADHVKNVILQQLSATSRDRAMLVV 321 (331)
Q Consensus 263 ~----~---~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~----~~~a~~~l~~~~~~l~~~~~~~a~~~~ 321 (331)
+ . ..++..+.|+...||...|...+++..... ...-...+..++.-...+|.+.-...+
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 0 0 112334444455555555555555554332 122233344444444444443333333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=84.28 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
..|.+|.. .+++++|.+.|.+|++. ++ ..++...+.+|... ++++|+.+|++|++
T Consensus 40 ~Aa~~fk~----~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 40 KAANCFKL----AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHH----TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred HHHHHHHH----HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence 34555555 56666666666666532 21 12333444444333 55555555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-07 Score=81.06 Aligned_cols=185 Identities=9% Similarity=-0.069 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRA 194 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a 194 (331)
.+..++|+..+.+++..+ +..++...|.++...+ ++++++.++.+++..++ .+..+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np---------------------knyqa 108 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP---------------------KNYQI 108 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---------------------cchHH
Confidence 468889999999999875 8889999999998877 67889998888888766 57889
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHH
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEH 270 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L 270 (331)
+++.+.++..- | ....++++.++.++++. .+..++...|+++.. .+++++|+.++.++++. .+..++++.
T Consensus 109 W~~R~~~l~~l-~-~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 109 WHHRRWLAEKL-G-PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred hHHHHHHHHHc-C-chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 99999888650 1 11247889999999876 678999999999976 44899999999999986 578899999
Q ss_pred HHHHhcc---CC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhch--hcHHHHHHHHHhhhcCCC
Q 020091 271 GLGLFTE---GE----MMKAVVYLELATRA--GETAADHVKNVILQQLSA--TSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 271 g~~~~~~---~~----~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~--~~~~~a~~~~~~~~~~~~ 329 (331)
+.++... +. .++++.+..+++.. .+..+...++.++..... ....++...+.++....|
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 9988765 22 35789999999976 467788888888766211 233457777777655444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-07 Score=83.82 Aligned_cols=81 Identities=11% Similarity=-0.055 Sum_probs=60.3
Q ss_pred ccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCc
Q 020091 173 PANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY------VRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~------~~a~~~lg~~y~~g~g~ 244 (331)
.+++++|+..++++++. +++.++..+|.+|.. .+++++|+.++.+++.... ...+..++.++..
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~---- 198 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE---- 198 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH----
Confidence 44455555555554432 578889999999987 7899999999999987531 2345678998865
Q ss_pred cccHHHHHHHHHHHHHc
Q 020091 245 PLSHRQARKWMKRAADC 261 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~ 261 (331)
.+++++|..+|+++...
T Consensus 199 ~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 199 RGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 44999999999998654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.7e-07 Score=86.95 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+..|+.+.|.|+.-|.. .++.+.|.++.+++++.+ ++.++..|+.++...+++.+|+..-..+++-
T Consensus 474 d~~dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCCCchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34588999999999988 899999999999999872 8999999999999999999999888887754
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-06 Score=80.68 Aligned_cols=148 Identities=20% Similarity=0.104 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.+-..++|..+..++. .++++.|...+...+.. +++..+-..+.++...++..+|++.+++++.+.|
T Consensus 303 ~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P------- 371 (484)
T COG4783 303 RGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP------- 371 (484)
T ss_pred ccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------
Confidence 3678899999999999 89999999999987654 6899999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+.+....++|.+|.. .+++.+|+..+++.... .++..|..|+..|..
T Consensus 372 --------------~~~~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~------------- 420 (484)
T COG4783 372 --------------NSPLLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE------------- 420 (484)
T ss_pred --------------CccHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-------------
Confidence 468888999999998 57888999999999765 789999999999964
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 254 WMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 254 ~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..+...+....+..|+..|++++|+.++.+|-+.
T Consensus 421 ------~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 421 ------LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2234677778888899999999999999999875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.2e-07 Score=83.63 Aligned_cols=250 Identities=17% Similarity=0.043 Sum_probs=141.6
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLM 146 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~ 146 (331)
++..+.+....|+..+|..+....++..+. +-+.++.--.+-+. ...++.|..+|.+|-.. |....++.-+.+
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMKSANL 660 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHHHhHH
Confidence 344555555667777777666666666543 23333222223322 56677777777776543 456666666666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
.+..++.++|+.+++.++...+... ..++.+.|...|....+. +...-+..|+.+=+. .++..
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~ 736 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLV 736 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchh
Confidence 6666777777777777776655554 444555555555554442 344444444444433 33455
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH--------------------------------c
Q 020091 214 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--------------------------------C 261 (331)
Q Consensus 214 ~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~--------------------------------~ 261 (331)
+|...+.++.-.+...+.++|..+-..-. ..+.++|.....+|++ .
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR--~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELR--AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 55555555544333333333322221100 1133444433333332 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 262 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 262 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+++.....+|..++.+..+++|..||.+|+..++ .++..++ .-..+..|..++-++++.+.-.-.|.|
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f--ykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF--YKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 4556677899999999999999999999998754 3444333 333445566667777888877777766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-07 Score=76.83 Aligned_cols=158 Identities=17% Similarity=0.073 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.++..+ +.+...+.. .++-+.+..+..+++... +......+|..+...|++.+|+..+++++...+
T Consensus 64 p~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p------- 131 (257)
T COG5010 64 PEDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP------- 131 (257)
T ss_pred cchHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-------
Confidence 346666 777777766 678888888888876654 555666699999999999999999999999877
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.+.+++.-+|.+|.+ .++++.|..-|.+|++. +++....|||.+|.- ..|++.|..
T Consensus 132 --------------~d~~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~ 189 (257)
T COG5010 132 --------------TDWEAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAET 189 (257)
T ss_pred --------------CChhhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHH
Confidence 489999999999998 88999999999999875 789999999999964 559999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 254 WMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 254 ~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
++..+...+ +.....+|+.+...+|++++|...-.+
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999998774 567778999999999999999876544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-07 Score=90.84 Aligned_cols=214 Identities=11% Similarity=-0.024 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..+..++..|..+|.. .+++++|++..+.+.+. +...+++.+|.++.+.++++++.-. .++..-+ ...+
T Consensus 28 p~n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~---~~~~ 98 (906)
T PRK14720 28 LSKFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS---QNLK 98 (906)
T ss_pred cchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---cccc
Confidence 3578899999999988 79999999999988876 4888999999999999998888777 5554433 3445
Q ss_pred HHHHHHHH-HHHHHC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHH
Q 020091 176 AEEAVKLL-YQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 176 ~~~A~~~~-~~a~~~-~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
. .++.++ ....+. ++..|++.||.||.. .++.++|...|+++++. .++.+++++|+.|.. . |.++|
T Consensus 99 ~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA 168 (906)
T PRK14720 99 W-AIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKA 168 (906)
T ss_pred h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHH
Confidence 5 455554 444454 456799999999987 78999999999999876 689999999999976 4 99999
Q ss_pred HHHHHHHHHc-----CCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhh-hchhcHHHHHHHHHh
Q 020091 252 RKWMKRAADC-----GHGKAQ-LEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQ-LSATSRDRAMLVVDS 323 (331)
Q Consensus 252 ~~~~~~a~~~-----~~~~a~-~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~~~a~~~l~~~~~~-l~~~~~~~a~~~~~~ 323 (331)
..++.+|+.. .+.... ++...|.+...+++.-....++.... +.......+-.++.. ....+.+++..+++.
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 9999999875 111111 23344444445555555555555443 333333333333333 334456788888888
Q ss_pred hhcCCCC
Q 020091 324 WRAMPSL 330 (331)
Q Consensus 324 ~~~~~~~ 330 (331)
++++.|.
T Consensus 249 iL~~~~~ 255 (906)
T PRK14720 249 ILEHDNK 255 (906)
T ss_pred HHhcCCc
Confidence 8877664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.7e-08 Score=93.68 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-
Q 020091 191 HVRAQYQLALCLHR-----GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG- 262 (331)
Q Consensus 191 ~~~a~~~lg~~y~~-----G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 262 (331)
++..++|||.-|.. |.+ ..+...|+.++++++.. ++..-+..||.+ .|.| ++.-|..+|.++....
T Consensus 774 ~~~~WyNLGinylr~f~~l~et-~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl--sg~g---nva~aQHCfIks~~sep 847 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGET-MKDACTAIRCCKKAVSLCANNEGLWNALGVL--SGIG---NVACAQHCFIKSRFSEP 847 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCc-chhHHHHHHHHHHHHHHhhccHHHHHHHHHh--hccc---hhhhhhhhhhhhhhccc
Confidence 34456666655543 221 23334666777766543 555556666666 3333 6666666666665442
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 263 -HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 263 -~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
....+.|+|.++.+..|++.|-..+.++...++.+..-+++..+....-+++-+...++.
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777666666666666666665555554444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.9e-07 Score=79.92 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLY 184 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~ 184 (331)
.++++.|..+-+++++.+ +..++..-|.++...++.++|+-.|+.|..+.|..- ..+.+.+|...-.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 588899999999999875 889999999999999999999999999988865433 5677777777777
Q ss_pred HHHHC--CCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHH
Q 020091 185 QASIA--GHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 259 (331)
Q Consensus 185 ~a~~~--~~~~a~~~lg-~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 259 (331)
.+.+. .++.+..-+| .++... +.--++|..++.+++.. ++..|-..++.+... ++.+..++..+++..
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHHHHHHHHH
Confidence 77664 6778888887 444431 55578999999999865 889999999998854 558899999999997
Q ss_pred Hc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 260 DC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 260 ~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.. .+..-+..||.++.....+++|+.+|..|+..++.+
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 65 667778899999999999999999999999987643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-06 Score=88.76 Aligned_cols=145 Identities=10% Similarity=-0.069 Sum_probs=78.6
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHH
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQ 250 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 250 (331)
++.++|...|... ..+..++..|...|.. .++.++|++.|++..+.| +...+..+-..+.+ .++.++
T Consensus 538 G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~e 607 (857)
T PLN03077 538 GRMNYAWNQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQ 607 (857)
T ss_pred CCHHHHHHHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHH
Confidence 3444444444443 3344555555555544 566777777777766654 22233333333322 236777
Q ss_pred HHHHHHHHHH-cC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 251 ARKWMKRAAD-CG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 251 A~~~~~~a~~-~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
|..+|....+ .| +...+..+...|...|++++|..++++.- . .+++..+-..+......++.+.+...++++.+
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~-~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-I-TPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 7777777763 22 34456667777777788888877777642 1 11222222222233345555666666666666
Q ss_pred CCCC
Q 020091 327 MPSL 330 (331)
Q Consensus 327 ~~~~ 330 (331)
..|.
T Consensus 686 l~p~ 689 (857)
T PLN03077 686 LDPN 689 (857)
T ss_pred hCCC
Confidence 6654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=86.46 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=77.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+...+|+++++.++..++..|+ |-.+++.||..+..- .++.++|.+.|..|++.. +.-|+-.|++
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpd--NYnA~vFLGvAl~sl---~q~le~A~ehYv~AaKldpdnlLAWkGL~n 79 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPD--NYNAQVFLGVALWSL---GQDLEKAAEHYVLAAKLDPDNLLAWKGLGN 79 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCC--cchhhhHHHHHHHhc---cCCHHHHHHHHHHHHhcChhhhHHHHHHHH
Confidence 355666778889999999999999998776 566788899999872 556999999999999985 8889999999
Q ss_pred HHhcC---CCHHHHHHHHHHHHHc
Q 020091 146 MYWEM---DKKEAAISLYRQAAVL 166 (331)
Q Consensus 146 ~~~~~---~~~~~A~~~~~~a~~~ 166 (331)
+|.+- -+++++...|++++..
T Consensus 80 Lye~~~dIl~ld~~~~~yq~~~l~ 103 (1238)
T KOG1127|consen 80 LYERYNDILDLDRAAKCYQRAVLI 103 (1238)
T ss_pred HHHccchhhhhhHhHHHHHHHHHh
Confidence 99884 5678888888888654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-06 Score=81.18 Aligned_cols=212 Identities=18% Similarity=0.144 Sum_probs=155.1
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CH--------HHHHHHH
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-ST--------LAMVDAG 144 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~--------~a~~~lg 144 (331)
..+...++..+++-+...+... .+..-+.+.+-.|+. .+.+.+.+..-..|++.| .. .+...+|
T Consensus 233 aaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e----~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLE----RGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHh----ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 4556677777776666666654 355666777777777 777777777777777665 22 2334567
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCC---CCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPA---AQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
..|...++++.|+.+|.+++.---.. ...+..++++......+- +.-+.....-|+.+.. .+||.+|+..|
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av~~Y 381 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAVKHY 381 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHHHHH
Confidence 77777889999999999987542211 134445555555444322 2224444566887776 89999999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 220 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 220 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.+|+.. .++..+.|.+.||.. ..++..|+.-.+.+++.+ ...+++.=|.+++.++++++|+..|+.+.+.++
T Consensus 382 teAIkr~P~Da~lYsNRAac~~k----L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLK----LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999986 678889999999976 459999999999999884 467889999999999999999999999999987
Q ss_pred HHHHH
Q 020091 296 TAADH 300 (331)
Q Consensus 296 ~~a~~ 300 (331)
.....
T Consensus 458 ~~~e~ 462 (539)
T KOG0548|consen 458 SNAEA 462 (539)
T ss_pred hhHHH
Confidence 65544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=85.79 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|+.+|++|+..+ ++.+++++|.+|...|++++|+..+++++.+++ +++.++
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------------------~~~~a~ 73 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP---------------------SLAKAY 73 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------------CCHHHH
Confidence 455555555555555443 455555555555555555555555555555543 345555
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC 237 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~ 237 (331)
+++|.+|.. .+++++|+.+|++++.. ++..+...++.|
T Consensus 74 ~~lg~~~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 74 LRKGTACMK----LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555544 45555555555555443 344444444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-06 Score=79.45 Aligned_cols=256 Identities=12% Similarity=-0.015 Sum_probs=170.1
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (331)
...+.++...++.+++...+..+..++++.++. ++++...|..... .|+.++|..+-+.++.. ++..+|.-+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc--chhHHhccchhhc----ccchHHHHHHHHHHhccCcccchhHHHH
Confidence 345677778899999999999999999987764 5555557877766 89999999999999875 478889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCC
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~ 210 (331)
|.++...+++++|+++|+.|+..++++- ..++++-....-.+..+ ++.-..+..++..+.- .+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g 157 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LG 157 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HH
Confidence 9999999999999999999999987765 45555555444444433 3455555556665543 56
Q ss_pred CHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCc-cccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH
Q 020091 211 NLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGL-PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 211 d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~-~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~ 282 (331)
++..|........... ...--.....+|....-. ....++|.+.+..--.. +.......-|.+++..++.++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 7887776655543321 111222333333221000 11355666555543222 222233456888999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-chhcHHHHHHHHHhhhcCCCCC
Q 020091 283 AVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 283 A~~~~~~A~~~~~~~a~~~l~~~~~~l-~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
|...|...+..++.+-.+......... -....+....++..+-+.+|.|
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 999999999988776666554444432 3344444446677766666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-06 Score=77.20 Aligned_cols=243 Identities=16% Similarity=0.030 Sum_probs=194.7
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (331)
..-..+.++-+..+|...++-.+. .-..+.....+-.. -|..+.-..+|++|+..- ...-+.+.+.-++..|
T Consensus 525 ~~~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~----hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKS----HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 334456667777777777776554 23334444444434 577788888899998763 5556677778888889
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI-AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
|...|...+.+|.+..+..- ....++.|..++.+|-. .|-...++.-+.+-.. ..+.++|++++
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~----ld~~eeA~rll 674 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY----LDNVEEALRLL 674 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH----hhhHHHHHHHH
Confidence 99999999999998766533 67789999999999855 4677777777766654 67899999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 220 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 220 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
+.+++. ....-+..+|.++.+ .++.+.|...|...... +...-+..|+.+-...|...+|...++++--.++
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 999986 678889999999977 56999999999988776 5677888999988889999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 296 TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 296 ~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++..++..+-..+..+..++|...+.+.++-+|+
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999888875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=68.51 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVLGD 168 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~ 168 (331)
++..++.+|.++.. .+++++|+.+|.++++.+ ++.+++++|.+|...+ ++++|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 58899999999999 999999999999999875 8899999999999999 79999999999998764
|
... |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-05 Score=70.26 Aligned_cols=249 Identities=11% Similarity=0.014 Sum_probs=179.9
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+......+-.|++..|+.-|....+..| .+-.++|.-|..|.. -|+..-|+.-+.+.+++. ...|...-|.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 4455566777888888766655544433 356788888888887 778888888888888764 66778889999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC--------------------------CccCHHHHHHHHHHHHHCC--CHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA--------------------------QPANAEEAVKLLYQASIAG--HVRAQYQL 198 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~A~~~~~~a~~~~--~~~a~~~l 198 (331)
+.+.|.+++|+.=|.+.+...+... ..+|...|+.+..+.++-. ++.-+-.-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 9999999999999999998877655 5667777777777776653 44445556
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH----------------
Q 020091 199 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD---------------- 260 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------- 260 (331)
+.||.. .++..+|+.-++.+... ++..++|.+..+++. .| +.+.++.-.+.++.
T Consensus 196 akc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vg---d~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 196 AKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VG---DAENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hh---hHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 677765 67788888888888654 777888877777743 22 33333333333322
Q ss_pred --------------cCCHHHHH----------------------HHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 261 --------------CGHGKAQL----------------------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 304 (331)
Q Consensus 261 --------------~~~~~a~~----------------------~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~ 304 (331)
.++...+. .+-.|+...+++-+|+..-.++++..+.++..+-..
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 22222221 233445557789999999999999999888888888
Q ss_pred HHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 305 ILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 305 ~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
....+...+.+.|++-+++..+.+++|
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 888899999999999999988888765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-07 Score=74.84 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
...+.+++.+|.+|.. .+++++|+.+|++++... .+.+++++|.++...|++++|+.+|++++...+
T Consensus 32 ~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 103 (172)
T PRK02603 32 AKEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---- 103 (172)
T ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 3577889999999999 899999999999999753 246899999999999999999999999998765
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
.++.++..+|.+|..
T Consensus 104 -----------------~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 104 -----------------KQPSALNNIAVIYHK 118 (172)
T ss_pred -----------------ccHHHHHHHHHHHHH
Confidence 478888899998865
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-07 Score=75.34 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
...+.+++.+|.++.. .+++++|+.+|++++... .+.+++++|.++...|++++|+.+|++++...+
T Consensus 32 ~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~---- 103 (168)
T CHL00033 32 EKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP---- 103 (168)
T ss_pred hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 3457788999999998 899999999999998763 345899999999999999999999999998755
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CC--CCCCCHHHHHHHHHHH
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GR--GVDFNLQEAARWYLRA 222 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~--g~~~d~~~A~~~~~~A 222 (331)
.+..++.++|.+|.. |. ...+++.+|+.+|.++
T Consensus 104 -----------------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 104 -----------------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred -----------------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 466777888887763 11 0145555555444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-07 Score=87.08 Aligned_cols=198 Identities=15% Similarity=-0.009 Sum_probs=132.0
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcCCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA-RGSTLAMVDAGLMYWEMDK 152 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~-~~~~~a~~~lg~~~~~~~~ 152 (331)
..+..|-..+|..+|.+. ..+-..-.||.. .|+..+|....++-++ ..++..+..||.+....-=
T Consensus 407 ll~slGitksAl~I~Erl----------emw~~vi~CY~~----lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL----------EMWDPVILCYLL----LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHcchHHHHHHHHHhH----------HHHHHHHHHHHH----hcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345667777887666533 333445566666 6788888888888887 3477777888888776655
Q ss_pred HHHHHHHHHHHHHc-----CCCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-
Q 020091 153 KEAAISLYRQAAVL-----GDPAAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE- 224 (331)
Q Consensus 153 ~~~A~~~~~~a~~~-----~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~- 224 (331)
+++|.+++...-.. ++..-..++++++...++.+.+. .....+|.+|.+..+ ..+++.|..+|.+.+.
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHHHHHHHHhhc
Confidence 55565555433211 12111456777777777776543 567777777777765 6677777777777754
Q ss_pred -CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 225 -GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 225 -~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.++..+++||...|.. .++..+|...+++|... +++..+.|.-.+..+-|++++|+..|.+.++.
T Consensus 549 ~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 3777777777777765 44777777777777655 55666666666667777777777777777654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-06 Score=86.40 Aligned_cols=110 Identities=11% Similarity=-0.021 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHHHH
Q 020091 209 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
.++.++|...|... ..+..++..+...|.. .++.++|+..|++..+.| +...+..+-..+...|+.++|..
T Consensus 537 ~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 537 CGRMNYAWNQFNSH--EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred cCCHHHHHHHHHhc--CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 34556666666554 4455566666666543 336677777777766543 23344444455666777777777
Q ss_pred HHHHHH-HcC-CHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 286 YLELAT-RAG-ETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 286 ~~~~A~-~~~-~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
+|+... +.| .++.......+......++.++|.+++++.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 777776 333 222233333333444456677777777664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=83.52 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=88.4
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
+++..+...+..+++.+|+..+.+.++..++ ++.+++.+|.+|.. .+++++|+..+++|+... ++.+++++|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4567778889999999999999999887664 79999999999999 899999999999999875 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+|...|++++|+.+|++++.+++.
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998774
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-05 Score=71.22 Aligned_cols=237 Identities=13% Similarity=-0.041 Sum_probs=155.3
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-C--CHHHHHHHHH
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G--STLAMVDAGL 145 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~--~~~a~~~lg~ 145 (331)
..+...+..|++.+|+....+ .++. ..+...+.+|--..++ .+|++.|-.|+.++++. | ........+.
T Consensus 89 ~egl~~l~eG~~~qAEkl~~r----nae~~e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRR----NAEHGEQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHH----hhhcCcchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 344456778999999644443 3333 3566666666433333 79999999999999988 3 3345566777
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHH---------------------------------
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVK--------------------------------- 181 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~--------------------------------- 181 (331)
++...+|+..|..-..++.++.+... ..+++.....
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888888876655 1222222221
Q ss_pred ---------HHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCccccHH
Q 020091 182 ---------LLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 182 ---------~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
|++.-- ...++.....++.-+.. .++.++|.++.+.+++.+ ++. +..+.-.. . +++..
T Consensus 242 ~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-~----~~d~~ 311 (400)
T COG3071 242 DNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-R----PGDPE 311 (400)
T ss_pred cccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhc-C----CCCch
Confidence 222210 11345555555555554 789999999999999874 455 33332222 2 33555
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 250 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 250 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.=++..++.+.. .++.....||..++..+.+.+|..+|+.|+...+ ......++..+.++. +..+|.+..++.+
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g--~~~~A~~~r~e~L 388 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG--EPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC--ChHHHHHHHHHHH
Confidence 555555555544 5678889999999999999999999999998864 556667777777664 4456666666643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-05 Score=73.19 Aligned_cols=245 Identities=11% Similarity=-0.017 Sum_probs=177.1
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+-++.-..+.|++++|+.......+...| ....+-..|.++.. .|++++|...|+..++.+ +..-+..|..+
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~D--k~~~~E~rA~ll~k----Lg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILD--KLAVLEKRAELLLK----LGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCC--HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 33444456789999998777666555554 45667778999998 899999999999999987 44444455544
Q ss_pred Hhc-----CCCHHHHHHHHHHHHHcCCCCC----------CccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCC
Q 020091 147 YWE-----MDKKEAAISLYRQAAVLGDPAA----------QPANAEE-AVKLLYQASIAGHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 147 ~~~-----~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~-A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~ 210 (331)
... ..+.+.-..+|.+.....+... ....+.. +..|....+..|.|....+|-.+|.. +.
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d----~~ 157 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD----PE 157 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC----hh
Confidence 411 2356777888887776654322 2234444 44556678889999999999998874 21
Q ss_pred CHHHHHHHHHHH---HHC------C------C----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHH
Q 020091 211 NLQEAARWYLRA---AEG------G------Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLE 269 (331)
Q Consensus 211 d~~~A~~~~~~A---~~~------~------~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~ 269 (331)
...-....+..- ++. + . ..+++.|+..|.. .+++++|+++..+|++.. .++.++.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 111112222221 110 1 1 2356788888855 449999999999999984 4788889
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 270 HGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
-|.+|...|++++|..+++.|-..+..+=..|-.-+...+..+++++|...+..+.+.
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 9999999999999999999999999888888888888889999999999998887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=84.53 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
...+...++..+.. ..+.++++.-++..+... ++......|.++...|++++|+..+.+.
T Consensus 65 ~l~av~~la~y~~~----~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------ 128 (290)
T PF04733_consen 65 ELQAVRLLAEYLSS----PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------ 128 (290)
T ss_dssp CCHHHHHHHHHHCT----STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------
T ss_pred hHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------
Confidence 44555566655544 455666666555443222 3445566667777777777776665432
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH--HHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNT--SLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~l--g~~y~~g~g~~~~~~~A~~ 253 (331)
++.+...-.-.+|.. .++++.|.+-++..-+.++-....+| +|+.....| ..+.+|..
T Consensus 129 --------------~~lE~~al~Vqi~L~----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~--e~~~~A~y 188 (290)
T PF04733_consen 129 --------------GSLELLALAVQILLK----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG--EKYQDAFY 188 (290)
T ss_dssp --------------TCHHHHHHHHHHHHH----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT--TCCCHHHH
T ss_pred --------------CcccHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc--hhHHHHHH
Confidence 356666666667765 67899999999998776554444444 444433121 48999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcH-HHHHHHHHhhhcCCCC
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR-DRAMLVVDSWRAMPSL 330 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~-~~a~~~~~~~~~~~~~ 330 (331)
.|+...+. ..+...+.++.+++.+|++++|...++.|++.++.++..+.+.+......++- +.+.+.+.+++..+|.
T Consensus 189 ~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 189 IFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 99998776 34667788999999999999999999999887665555555555543433433 5677888889988988
Q ss_pred C
Q 020091 331 H 331 (331)
Q Consensus 331 ~ 331 (331)
|
T Consensus 269 h 269 (290)
T PF04733_consen 269 H 269 (290)
T ss_dssp S
T ss_pred C
Confidence 7
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=73.28 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
++... .+++..+...|+-+.+..+..+++...+ .+......+|..... .+|+.+
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~---------------------~d~~ll~~~gk~~~~----~g~~~~ 118 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP---------------------KDRELLAAQGKNQIR----NGNFGE 118 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCc---------------------ccHHHHHHHHHHHHH----hcchHH
Confidence 35555 6777777777777777666666554433 255566667877765 789999
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|+..+++|+.. .+..++..+|.+|.+ ..+++.|..-|.++.+. +.+....|||..|+-.||++.|..++..+
T Consensus 119 A~~~~rkA~~l~p~d~~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 119 AVSVLRKAARLAPTDWEAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHHHHHHHhccCCCChhhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 789999999999966 44999999999999887 67899999999999999999999999999
Q ss_pred HHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 291 TRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 291 ~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
...+ +.....|+..+.. ..+++.+|+.+..+-
T Consensus 195 ~l~~~ad~~v~~NLAl~~~--~~g~~~~A~~i~~~e 228 (257)
T COG5010 195 YLSPAADSRVRQNLALVVG--LQGDFREAEDIAVQE 228 (257)
T ss_pred HhCCCCchHHHHHHHHHHh--hcCChHHHHhhcccc
Confidence 8765 5666667666664 456667777666553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-05 Score=68.31 Aligned_cols=223 Identities=15% Similarity=0.086 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
++.-.+.||.-++. .+.+..|+..|..|++.+ +-.+.+.-|..|...|+-.-|+.=+.+++++.++..
T Consensus 37 dvekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45667888988887 899999999999999875 778999999999999999999999999999987765
Q ss_pred -----CccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhc--------CCCCCCCHHHHHHHHHHHHHCCCH--HHH
Q 020091 172 -----QPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHR--------GRGVDFNLQEAARWYLRAAEGGYV--RAM 231 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~--------G~g~~~d~~~A~~~~~~A~~~~~~--~a~ 231 (331)
..+.+++|..-|.+.++.+ .-+++-.|+.+-.. .....+|+..|+++....++.... .-.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 7899999999999998753 23444444433211 011267999999999999987544 445
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH------------
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA------------ 297 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~------------ 297 (331)
..-+.||.. .....+|+.-++.+... ++.+++|.++.+++..|+.+.++.-.+.-+..++..
T Consensus 193 ~~Rakc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 193 QARAKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 567888865 45899999999999876 778999999999999999999999999988876522
Q ss_pred HHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 298 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 298 a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
....+..+...+...+.-++.+..+++++..|+
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 233444555566677777788888888877775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=66.49 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
+..++.+|..+.. .+++++|+..|.+++... + +.+++.+|.++...+++++|+.+|++++...+...
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---- 73 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---- 73 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC----
Confidence 4678888988888 899999999999988753 2 56888999999999999999999988887654210
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
..+.+++.+|.++.. .+++++|+.+|.++++.
T Consensus 74 --------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 74 --------------KAPDALLKLGMSLQE----LGDKEKAKATLQQVIKR 105 (119)
T ss_pred --------------cccHHHHHHHHHHHH----hCChHHHHHHHHHHHHH
Confidence 136788899998886 78899999999988775
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-07 Score=64.30 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCC-CHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDF-NLQE 214 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~-d~~~ 214 (331)
++..++.+|.++...+++++|+.+|.++++.++ +++.+++++|.+|.. .+ ++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p---------------------~~~~~~~~~g~~~~~----~~~~~~~ 56 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP---------------------NNAEAYYNLGLAYMK----LGKDYEE 56 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST---------------------THHHHHHHHHHHHHH----TTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------CCHHHHHHHHHHHHH----hCccHHH
Confidence 567888999999999999999999999998876 588899999999986 66 6899
Q ss_pred HHHHHHHHHHC
Q 020091 215 AARWYLRAAEG 225 (331)
Q Consensus 215 A~~~~~~A~~~ 225 (331)
|+++|+++++.
T Consensus 57 A~~~~~~al~l 67 (69)
T PF13414_consen 57 AIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998764
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-06 Score=76.87 Aligned_cols=238 Identities=13% Similarity=-0.003 Sum_probs=128.3
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (331)
..+...+|..|+..+...++.-++ ++..+.+-+..+.. -++++.|.-..++.++. |.+.++...+.|+...+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 355667788888888777777766 46666666666666 67888888888877765 56777788888887777
Q ss_pred CHHHHHHHHHHHH---------------HcCC--CCC------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 020091 152 KKEAAISLYRQAA---------------VLGD--PAA------------QPANAEEAVKLLYQASIA--GHVRAQYQLAL 200 (331)
Q Consensus 152 ~~~~A~~~~~~a~---------------~~~~--~~~------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 200 (331)
+..+|.+.|+... .... |.. ..+++.+|...--...++ .+.++.+--|.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 7777776665221 0000 000 233333333332222222 34455555555
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---
Q 020091 201 CLHRGRGVDFNLQEAARWYLRAAEGGYVR--------------AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--- 263 (331)
Q Consensus 201 ~y~~G~g~~~d~~~A~~~~~~A~~~~~~~--------------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--- 263 (331)
++.. ..+.++|+..|++++..+... .+-.-|...+. ..++.+|.+.|..|+..+.
T Consensus 212 ~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 212 CLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred cccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCcccc
Confidence 4443 445566666666665543211 11111222211 2255566666666655422
Q ss_pred ---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 264 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 264 ---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
..-+.+.+.+....|+..+|+.--..|+.+++.-....+.....++..++.++|.+-+++..
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455555555566666655555555555444444444445555555555555554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=84.95 Aligned_cols=165 Identities=16% Similarity=-0.017 Sum_probs=121.2
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAI 157 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~ 157 (331)
.|+...|..+..+.++ +.+++..+..||++..+ .-=+++|.++.+.- +..|...+|....+.++++++.
T Consensus 437 lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d----~s~yEkawElsn~~----sarA~r~~~~~~~~~~~fs~~~ 505 (777)
T KOG1128|consen 437 LGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD----PSLYEKAWELSNYI----SARAQRSLALLILSNKDFSEAD 505 (777)
T ss_pred hcccchHHHHHHHHhc---CCCcchhHHHhhhhccC----hHHHHHHHHHhhhh----hHHHHHhhccccccchhHHHHH
Confidence 4556666554444444 35678888888888766 43344444444322 4457788888888888899999
Q ss_pred HHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 158 SLYRQAAVLGDPAA-----------QPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 158 ~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
..++.+.++++... ...+.+.|..+|.+.+ ++++.+++.||...|.. .++..+|...++.|+.
T Consensus 506 ~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 506 KHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhh
Confidence 99998888876554 6788888888888865 46899999999999986 7889999999999987
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
. ++...+-|.-.+... ...+++|+..|.+-...
T Consensus 582 cn~~~w~iWENymlvsvd----vge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 582 CNYQHWQIWENYMLVSVD----VGEFEDAIKAYHRLLDL 616 (777)
T ss_pred cCCCCCeeeechhhhhhh----cccHHHHHHHHHHHHHh
Confidence 6 455555555555533 33899999999998765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.8e-05 Score=69.41 Aligned_cols=219 Identities=13% Similarity=-0.026 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----- 171 (331)
.|...+..+|.+++. .||+.+|+.-|+++...+ ...++=..|+++...|+++.-..+-.......+-.+
T Consensus 230 ~NvhLl~~lak~~~~----~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYY----NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhh----hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 477888899999998 899999999999887654 566666667777666665543333222222211111
Q ss_pred ------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----------------
Q 020091 172 ------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG----------------- 226 (331)
Q Consensus 172 ------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~----------------- 226 (331)
..+++..|+.+-+|+++. .+..++..-|.++.+ .++.++|+-.|+.|...-
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 567777788777777764 467777777777766 566777777777764321
Q ss_pred -------------------CHHHHHHHH-HHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHH
Q 020091 227 -------------------YVRAMYNTS-LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 227 -------------------~~~a~~~lg-~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
++.++..+| .+... .+.-.++|..+++++..+ ++..|-..++.++..+|.++.++
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 222222222 11111 145668999999999877 67889999999999999999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 285 VYLELATRA-GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 285 ~~~~~A~~~-~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+++++.. .+..-+..++.++. ...+.++++.-+...++.+|.
T Consensus 459 ~LLe~~L~~~~D~~LH~~Lgd~~~--A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 459 KLLEKHLIIFPDVNLHNHLGDIMR--AQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhhccccHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCcc
Confidence 999999865 44555566666664 455678899999998888874
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=68.60 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=99.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-C----HHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMV 141 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~ 141 (331)
.+..+...+..++...+...+..+.+..++.. -..+.+.+|.++.. .+++++|...|+.+++.. + +.+.+
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34555556678888888777777887766542 35788889999999 899999999999999875 2 35788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
.|+.++...|++++|+..++...... -.+.+...+|.+|.. .+++++|+..|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~----------------------~~~~~~~~~Gdi~~~----~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA----------------------FKALAAELLGDIYLA----QGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc----------------------hHHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 99999999999999999986632111 246677889999987 8999999999998
Q ss_pred HH
Q 020091 222 AA 223 (331)
Q Consensus 222 A~ 223 (331)
|+
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 74
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-05 Score=83.73 Aligned_cols=241 Identities=13% Similarity=0.036 Sum_probs=160.3
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDA 143 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~l 143 (331)
.+..|++.+|...+...+...+... ...+...+|.++.. .+++++|..+++++... |. ..+..++
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 4567899999888877766433322 12466788888887 89999999999998753 32 3466789
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCC-----C--------------CccCHHHHHHHHHHHHHC----C---CHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPA-----A--------------QPANAEEAVKLLYQASIA----G---HVRAQYQ 197 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~-----~--------------~~~~~~~A~~~~~~a~~~----~---~~~a~~~ 197 (331)
|.++...|++++|..+++++.+..... . ..+++++|..++.+++.. + ...++..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 999999999999999999987752111 0 458899999999988653 1 2445666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC-HHHHH---HHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH---
Q 020091 198 LALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY---NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG--- 264 (331)
Q Consensus 198 lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~-~~a~~---~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~--- 264 (331)
+|.++.. .+++++|..++.++... +. ..... .+...+.... .+.+.|..|+....... ..
T Consensus 618 la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 618 LAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT---GDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC---CCHHHHHHHHHhcCCCCCccchhH
Confidence 7888775 78999999999998543 11 11111 1111211112 37778888876654321 11
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 265 -KAQLEHGLGLFTEGEMMKAVVYLELATRA----GE--TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 265 -~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
.....++.++...|++++|...++++... |. ..+...+.........++.++|...+.+.++
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11346788888888888998888888764 22 2333344444455566677778777777654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-06 Score=70.13 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G 262 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 262 (331)
..+.+++++|..|.. .+++++|+.+|+++++.. ...+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Confidence 467788999999986 789999999999998642 24689999999976 44999999999999887 5
Q ss_pred CHHHHHHHHHHHhccCCH
Q 020091 263 HGKAQLEHGLGLFTEGEM 280 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~~~~ 280 (331)
+..++..+|.++...|+.
T Consensus 105 ~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred cHHHHHHHHHHHHHcCCh
Confidence 678888999999887763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=62.77 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHH
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAV 180 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~ 180 (331)
+++.+|.++.. .+++++|+.+|+++++.. ++.+++.+|.++...+++++|+.+|.+++...+
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------ 65 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP------------ 65 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------
Confidence 35667777777 677777777777777654 446677777777777777777777777776654
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 181 KLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 181 ~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.+..+++.+|.++.. .+++++|..++.++.+.
T Consensus 66 ---------~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 ---------DNAKAYYNLGLAYYK----LGKYEEALEAYEKALEL 97 (100)
T ss_pred ---------cchhHHHHHHHHHHH----HHhHHHHHHHHHHHHcc
Confidence 244666777777765 56677777777776543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-05 Score=64.13 Aligned_cols=141 Identities=16% Similarity=0.004 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLY 184 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~ 184 (331)
.+..+-|..++.+.-+. |+....-.-|+.+...+++++|+++|...++.++.+. ..+..-+|++-+.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45555566655554433 4555555556666666666666666666665544321 1111112222222
Q ss_pred HHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 185 QASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 185 ~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
.-.+ .++.+||..|+.+|.. .+++.+|.-+|+..+-... +.-...+|.+++...| ..|..-|..+|.+|++
T Consensus 145 ~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 145 EYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYYERALK 219 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 2222 1455555556555554 4555555555555543322 2222345555433222 4455555555555555
Q ss_pred cCC
Q 020091 261 CGH 263 (331)
Q Consensus 261 ~~~ 263 (331)
...
T Consensus 220 l~~ 222 (289)
T KOG3060|consen 220 LNP 222 (289)
T ss_pred hCh
Confidence 533
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=65.50 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=68.7
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (331)
.++++.|+..+.++++..+...+...++.||.+|+. .+++++|+.++++ ... .++...+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 578999999999999998852267788889999999 9999999999998 433 467889999999999999999
Q ss_pred HHHHHHHH
Q 020091 156 AISLYRQA 163 (331)
Q Consensus 156 A~~~~~~a 163 (331)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=60.62 Aligned_cols=93 Identities=23% Similarity=0.181 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 269 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 269 (331)
+++++|.++.. .+++++|+.+|+++++. .+..+++.+|.+|.. .+++++|..+|.++... .+..+++.
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46788888876 67899999999998875 345678888888876 45889999999998876 34567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 270 HGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+|.++...|++++|..++.++.+..
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccC
Confidence 8999999999999999998887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-06 Score=63.09 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=84.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAM 140 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~ 140 (331)
..+..+...+..|++.+|...+..+.+..++.. .+.+++.+|.++.. .+++++|+.+|+.++... .+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456667777889999999999999988766532 36789999999999 899999999999998752 36789
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|.++...++.++|+.+|.++++..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999988664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=59.79 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|..+.. .+++++|+..|+++++.. ++.+++.+|.++...|++++|+.+|+++++..|.
T Consensus 1 ~~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467888888 899999999999999885 8999999999999999999999999999988764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-06 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
.|++|.++...|+.++|+.+|++++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA 29 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.9e-05 Score=65.13 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
.+...|..|.-+.. .+++++|+..|++....- .+ .+.++||.+|++.+++++|+.+|++.+...|...
T Consensus 31 ~~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~--- 103 (243)
T PRK10866 31 PPSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP--- 103 (243)
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC---
Confidence 45566667777766 677777777777776642 22 3457788888888888888888887777765422
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCL 202 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y 202 (331)
..+.++|.+|.++
T Consensus 104 ---------------~~~~a~Y~~g~~~ 116 (243)
T PRK10866 104 ---------------NIDYVLYMRGLTN 116 (243)
T ss_pred ---------------chHHHHHHHHHhh
Confidence 3466777777664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=65.46 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=80.9
Q ss_pred ccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHhcCCC
Q 020091 173 PANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G---YVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~---~~~a~~~lg~~y~~g~g 243 (331)
.+++..+..++...++. .....++++|.++.. .+++++|+.+|++++.. + .+.+++++|.+|..
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~--- 84 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS--- 84 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH---
Confidence 34455555555443322 235677899999976 78899999999999865 3 24588999999976
Q ss_pred ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHh-------ccCCHHHHHHHHHHHH
Q 020091 244 LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF-------TEGEMMKAVVYLELAT 291 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~-------~~~~~~~A~~~~~~A~ 291 (331)
.+++++|+.+|+++... .+..++.++|.++. ..|++++|+.++.+|.
T Consensus 85 -~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 85 -NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred -cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 45999999999999876 45677888888888 7778776655555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.9e-06 Score=71.32 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=86.5
Q ss_pred HHHHHHHHhc-cCCchHHHhHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHH
Q 020091 66 FDVLNKIAAS-FTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTL 138 (331)
Q Consensus 66 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~ 138 (331)
...+..+..+ +..+++++|...|..+++.-|+... +.++|.||.+|+. .+++++|+.+|++.++. ..++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 4456666665 5679999999999999999887543 6899999999999 99999999999999964 2689
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+++.+|.++...|+.++|+..|+++++..|.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999987653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=62.90 Aligned_cols=92 Identities=16% Similarity=-0.040 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-C----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK 265 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~ 265 (331)
..+.+.+|.++.. .+++++|+..|+.+++.. + ..+...|+.++.. .+++++|+..+...... -.+.
T Consensus 48 ~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al~~L~~~~~~~~~~~ 119 (145)
T PF09976_consen 48 ALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEALATLQQIPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHhccCcchHHH
Confidence 4677888888886 789999999999998864 2 3467788999876 55999999999774333 2345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
+...+|.+|...|++++|+..|++|+
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 66789999999999999999999874
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.5e-07 Score=62.41 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+.++.++|.+|.. .+++++|+.+|++|++. | .+.++.++|.++...|++++|+.+|++++++
T Consensus 5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678999999999 99999999999999864 3 2457889999999999999999999999865
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.1e-06 Score=62.26 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
|.++|.+|.++.. .|+.++|+.+|++|+..|. ..++..+|..+...|++++|+.++++++...+...
T Consensus 1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~---- 72 (120)
T PF12688_consen 1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE---- 72 (120)
T ss_pred CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc----
Confidence 3578899999998 9999999999999999872 35788999999999999999999999987644210
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.+......++.++.+ .++.++|+.++-.++.
T Consensus 73 --------------~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 --------------LNAALRVFLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred --------------ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 255666777887776 6789999999988764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00016 Score=68.85 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=59.6
Q ss_pred cccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
.++++.|..|...|++.-+ .+-+..-|.++...|++++|..|+..|-+.+..+-..|-.-+-..+...++++|.+++.
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 4588888888888887644 34445567888889999999999999988887776655445555566667777777776
Q ss_pred hhh
Q 020091 323 SWR 325 (331)
Q Consensus 323 ~~~ 325 (331)
...
T Consensus 464 kFT 466 (700)
T KOG1156|consen 464 KFT 466 (700)
T ss_pred Hhh
Confidence 654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00018 Score=67.79 Aligned_cols=242 Identities=11% Similarity=0.022 Sum_probs=159.5
Q ss_pred hccCCchHHHhHHHHHHHHHHhCC-----------------------------CCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRP-----------------------------LREAMVLLRWGKRFKHGRGVRKNLDKA 124 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------~~~~~a~~~LG~~y~~g~g~~~~~~~A 124 (331)
-.+..++++++..+|..+.+...+ .+.-+.+|+.+.++.. .++|.+|
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA 194 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQA 194 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHH
Confidence 356778888888888776443221 1133468999999998 8999999
Q ss_pred HHHHHHHHhC-------C----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------------
Q 020091 125 LDSFLKGAAR-------G----------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------- 171 (331)
Q Consensus 125 ~~~~~~A~~~-------~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------- 171 (331)
++.+++|.+. + .......|++++...|+.++|...|...+..++.+.
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 9999999432 1 112446899999999999999999999988766665
Q ss_pred ------------------------------------------------------------------------------Cc
Q 020091 172 ------------------------------------------------------------------------------QP 173 (331)
Q Consensus 172 ------------------------------------------------------------------------------~~ 173 (331)
..
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 11
Q ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhcCC
Q 020091 174 ANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYL--------RAAEGGYVRAMYNTSLCYSFGE 242 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~--------~A~~~~~~~a~~~lg~~y~~g~ 242 (331)
..+.++..++....+.. .......++.+... .+++..|++.+. ...+.++..+....+..+..+.
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKI 430 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhc
Confidence 23555555555554431 23345555555554 788999999988 5566677776665555544432
Q ss_pred C----ccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHH
Q 020091 243 G----LPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 316 (331)
Q Consensus 243 g----~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~ 316 (331)
+ -..-..+|+.|++....... ...+..++.+-...|+.++|...|+...+..+.+...+...+. -+...|.++
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~-a~~~~d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVT-AYARLDPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHH-HHHhcCHHH
Confidence 2 12335677777777643321 2233345555566799999999999999976666555444443 244556777
Q ss_pred HHHHHHhh
Q 020091 317 AMLVVDSW 324 (331)
Q Consensus 317 a~~~~~~~ 324 (331)
|..+-+++
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 77666655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-05 Score=70.37 Aligned_cols=143 Identities=9% Similarity=0.041 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHhc----CC-CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC
Q 020091 175 NAEEAVKLLYQAS-----IAGHVRAQYQLALCLHR----GR-GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGE 242 (331)
Q Consensus 175 ~~~~A~~~~~~a~-----~~~~~~a~~~lg~~y~~----G~-g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~ 242 (331)
+.+.|+.+|.+|+ +++++.++..++.+|.. |+ ....+..+|.+.-++|++. +|+.+...+|.++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-- 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-- 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--
Confidence 3444444444444 23678888888888765 34 3467788999999999886 688899999997644
Q ss_pred CccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhhchhcHHHHHH
Q 020091 243 GLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH-VKNVILQQLSATSRDRAML 319 (331)
Q Consensus 243 g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~-~l~~~~~~l~~~~~~~a~~ 319 (331)
..+++.|..+|++|... +.+.+++.+|+++...|+.++|..++++|++..+..... .+.......-+.-++.++.
T Consensus 351 --~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
T PRK11906 351 --SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIK 428 (458)
T ss_pred --hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHH
Confidence 44799999999999887 568889999999999999999999999999998865433 3333333444555556655
Q ss_pred HH
Q 020091 320 VV 321 (331)
Q Consensus 320 ~~ 321 (331)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 54
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=61.52 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH
Q 020091 209 DFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+++++|+.+|+++++... ...++.+|.+|.. .+++++|+.++++ ... .+....+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4678899999999877533 3456677999877 5589999999988 322 456778888999999999999
Q ss_pred HHHHHHHH
Q 020091 283 AVVYLELA 290 (331)
Q Consensus 283 A~~~~~~A 290 (331)
|+..|++|
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99998875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00018 Score=69.62 Aligned_cols=217 Identities=13% Similarity=0.052 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCC---
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAA--- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~--- 171 (331)
.++..+-.|...... .|+++.+.+.|+++... +..+.++.++.+|..-|....|+...++....- ++..
T Consensus 321 nd~ai~d~Lt~al~~----~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSR----CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 366667777777777 89999999999999864 678889999999999999999999999998776 3222
Q ss_pred ---------CccCHHHHHHHHHHHHHC-----C--CHHHHHHHHHHHhcCCCCCC-------CHHHHHHHHHHHHHC--C
Q 020091 172 ---------QPANAEEAVKLLYQASIA-----G--HVRAQYQLALCLHRGRGVDF-------NLQEAARWYLRAAEG--G 226 (331)
Q Consensus 172 ---------~~~~~~~A~~~~~~a~~~-----~--~~~a~~~lg~~y~~G~g~~~-------d~~~A~~~~~~A~~~--~ 226 (331)
..+..++++.|-.++++. + .+.++..+|.+|-.--.... ...+++..+++|++. .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 789999999999999873 1 47788899999864221111 234778888888765 6
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
|+.+.++++.=|.. .++.+.|+.+.+++... .+..++..|+.++-.++++.+|+....-+++.-..+-.....
T Consensus 477 dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred CchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 88999999999976 67999999999999877 357888999999999999999999999998764444444445
Q ss_pred HHHhhhchhcHHHHHHHHHh
Q 020091 304 VILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 304 ~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+...+.-++.+++......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hhhhhhhcccHHHHHHHHHH
Confidence 55555666666666554444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-05 Score=75.15 Aligned_cols=140 Identities=15% Similarity=-0.026 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhc--CCCC--CCCHHHHHHHHHHHHHC--
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR--GRGV--DFNLQEAARWYLRAAEG-- 225 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~--G~g~--~~d~~~A~~~~~~A~~~-- 225 (331)
-+|..+|.++...-. ....++..+|+.+|++|++ ++++.++-.++.+|.. +++. ..+..++.....++...
T Consensus 337 ~~Ay~~~lrg~~~~~-~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 337 GAALTLFYQAHHYLN-SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 345555555533311 1124445566666666554 3788888888887754 2221 12345667777776542
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
.++.++..+|.++.. .+++++|...|++|++.+ +..++..+|.++...|+.++|+.+|++|...++...
T Consensus 416 ~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 416 LNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 346777778888754 349999999999999884 577889999999999999999999999999876543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.5e-05 Score=69.97 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---hC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGA---AR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~---~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+|..|...... +...+.+.|..+|.+|+ .. +.+.++..++.|++.. .-+|-.. .+.+..
T Consensus 257 d~ylrg~~~~~~-~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~-------------~~~g~~~-~~~~~~ 321 (458)
T PRK11906 257 DEMLAGKKELYD-FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL-------------ALHGKSE-LELAAQ 321 (458)
T ss_pred HHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH-------------HHhcCCC-chHHHH
Confidence 446666555442 45778889999999999 44 3788999999998764 0001111 233444
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 178 EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 178 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+|...-++|++. +++.|.+.+|.++.. .++++.|..+|++|... +.+.+++..|++... ..+.++|..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~ 393 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHH
Confidence 445555554443 689999999998765 56799999999999876 678899999998765 459999999
Q ss_pred HHHHHHHcCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 254 WMKRAADCGHGKA---QLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 254 ~~~~a~~~~~~~a---~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++++|.+..+... ...+=.-.+...-.+.|+.+|-+-.+.
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 9999999866432 233333144567788899888665554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00014 Score=61.44 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+..+|..|..++. .|++.+|+..|++....- -+.+++.+|.+++..+++++|+..|++-+...|...
T Consensus 3 ~~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-- 76 (203)
T PF13525_consen 3 DTAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-- 76 (203)
T ss_dssp --HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T--
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--
Confidence 367889999999999 899999999999998752 567899999999999999999999999988766321
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccc
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRG-RGV------DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G-~g~------~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~ 246 (331)
..+.+++.+|.++..- .+. +....+|+..|+..+.. | -. ..
T Consensus 77 ----------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~------------y-P~---S~ 124 (203)
T PF13525_consen 77 ----------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR------------Y-PN---SE 124 (203)
T ss_dssp ----------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--------------TT---ST
T ss_pred ----------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH------------C-cC---ch
Confidence 2356788888876431 011 22334566666666542 1 00 00
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHhhhchhcH
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GE---TAADHVKNVILQQLSATSR 314 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~---~~a~~~l~~~~~~l~~~~~ 314 (331)
-..+|...+... ...-..-.+.+|..|++.|.+.-|+..++.+++. +. ..+...+...+..+...+.
T Consensus 125 y~~~A~~~l~~l-~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 125 YAEEAKKRLAEL-RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp THHHHHHHHHHH-HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 111222211111 1112344467888999999999999999999886 32 4566777777777766653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00024 Score=61.70 Aligned_cols=82 Identities=10% Similarity=-0.012 Sum_probs=68.3
Q ss_pred ChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCH
Q 020091 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GST 137 (331)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~ 137 (331)
.+......+...+..|++.+|...+..+....|....+ .+.+.||.+|+. .+++++|+.+|++.++. ..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCcCCCchH
Confidence 35566788888999999999999999999887765332 466999999999 89999999999999986 356
Q ss_pred HHHHHHHHHHhc
Q 020091 138 LAMVDAGLMYWE 149 (331)
Q Consensus 138 ~a~~~lg~~~~~ 149 (331)
.+++.+|.++..
T Consensus 107 ~a~Y~~g~~~~~ 118 (243)
T PRK10866 107 YVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHHHhhhh
Confidence 789999988644
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.1e-05 Score=64.20 Aligned_cols=196 Identities=17% Similarity=0.134 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHHHHhC------C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHC
Q 020091 118 RKNLDKALDSFLKGAAR------G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIA 189 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~------~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~ 189 (331)
...+++|.++|.+|+.. . -.++....+.++.+.++..+|-..|-.|...- ...++++|+.++.++++-
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy----kk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY----KKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh----hccChHHHHHHHHHHHHH
Confidence 56999999999999864 1 23567788888888888888888888877654 456899999999998863
Q ss_pred ----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CC-HHHH-----HHHHHHHhcCCCccccHHHHHH
Q 020091 190 ----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GY-VRAM-----YNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 190 ----~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~-~~a~-----~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
|. +.-+..+|.+|+.. ..|+.+|+.+|++|++- |+ ..+. ...+..- . ...++.+|+.
T Consensus 103 yt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya-a---~leqY~~Ai~ 175 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA-A---QLEQYSKAID 175 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH-H---HHHHHHHHHH
Confidence 32 22244688888863 58899999999999873 22 1121 1122211 1 1348889999
Q ss_pred HHHHHHHc--CCHH-------HHHHHHHHHhccCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhhhchhcHHHHHHH
Q 020091 254 WMKRAADC--GHGK-------AQLEHGLGLFTEGEMMKAVVYLELATRAGE----TAADHVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 254 ~~~~a~~~--~~~~-------a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~----~~a~~~l~~~~~~l~~~~~~~a~~~ 320 (331)
.|++.+.. ++.. -.+.-|.|+....|.-.+...+++-.+.+| ..-+..+..+..-+...+.+.=-+.
T Consensus 176 iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~ 255 (288)
T KOG1586|consen 176 IYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEV 255 (288)
T ss_pred HHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99887654 4432 234567777777777766666666666654 4456667777777777766655555
Q ss_pred HHhh
Q 020091 321 VDSW 324 (331)
Q Consensus 321 ~~~~ 324 (331)
+.++
T Consensus 256 vkef 259 (288)
T KOG1586|consen 256 VKEF 259 (288)
T ss_pred HHhh
Confidence 5544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=69.47 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.++|.+|+..|.+|+... ++.-+.+-+-.|.+.|.++.|++-++.|+.+++ .+..+|
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp---------------------~yskay 152 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP---------------------HYSKAY 152 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh---------------------HHHHHH
Confidence 689999999999999986 777888999999999999999999999999877 488999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 263 (331)
..||.+|.. .+++.+|++.|++|++. .+.....+|.+.-.. ...++....+..-+..+...|.
T Consensus 153 ~RLG~A~~~----~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~~~~~~~~~~~d~~~~ig~ 217 (304)
T KOG0553|consen 153 GRLGLAYLA----LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEPKSSAQASGSFDMAGLIGA 217 (304)
T ss_pred HHHHHHHHc----cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCCCcccccccchhhhhhccC
Confidence 999999987 78899999999999886 455556666666532 2223334445555555555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.7e-05 Score=70.80 Aligned_cols=219 Identities=13% Similarity=0.085 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
+.+.+.....++.. .|++++|++++...... +....+-..|.++...|++++|...|+..++.+|.+.
T Consensus 3 ~SE~lLY~~~il~e----~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L 78 (517)
T PF12569_consen 3 HSELLLYKNSILEE----AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34556666777777 79999999999886654 4556677899999999999999999999999988776
Q ss_pred ----------CccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 172 ----------QPANAEEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNL-QEAARWYLRAAEGGYVRAMYNTSLCYS 239 (331)
Q Consensus 172 ----------~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~G~g~~~d~-~~A~~~~~~A~~~~~~~a~~~lg~~y~ 239 (331)
...+.+.-..+|.+.... -...+.-.+...+..| ..+ ..+..|++..+..|-|....+|--+|.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g----~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG----DEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 112456666677665443 2233444555555443 233 356677778888899999899988885
Q ss_pred cCCCccccHHHHHHHHHH---HHHc------------CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH
Q 020091 240 FGEGLPLSHRQARKWMKR---AADC------------GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 300 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~---a~~~------------~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 300 (331)
.- ....--...+.. ..+. .++ .+++.|+..|...|++++|+.+..+|++..+.....
T Consensus 155 d~----~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 155 DP----EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred Ch----hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 31 111111111111 1110 112 245778999999999999999999999998765555
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+...-..-..|++.+|.+.+++.+.+.+.
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 444444444668889999998888776553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00022 Score=73.98 Aligned_cols=238 Identities=11% Similarity=-0.012 Sum_probs=131.7
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCC-------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---CC----HHHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLR-------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS----TLAMV 141 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~-------~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~~----~~a~~ 141 (331)
+..+++.++...+..........+ .......+|.++.. .+++++|..+++++... ++ ..+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----DGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 455677777666655544332211 23344556777766 78888888888888763 12 23556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccCHHHHHHHHHHHHHC----CC------HHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPANAEEAVKLLYQASIA----GH------VRA 194 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~~~A~~~~~~a~~~----~~------~~a 194 (331)
.+|.++...|++++|..+++++........ ..+++++|..+++++.+. +. ...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 788888888888888888888875422111 456777777777776542 11 122
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH 263 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~ 263 (331)
...+|.++.. .+++++|..++.+++.. + ...++..+|.++.. ..++++|..++.++... +.
T Consensus 576 ~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~ 647 (903)
T PRK04841 576 LRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLGNGRY 647 (903)
T ss_pred HHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccc
Confidence 3455665554 56777777777777542 1 13334455666543 33777777777776443 11
Q ss_pred -HHHHH---H-HHHHHhccCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 264 -GKAQL---E-HGLGLFTEGEMMKAVVYLELATRAGETAA----DHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 264 -~~a~~---~-Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a----~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
..... . ....+...|+.+.|..++........... .............++.++|...+++.+
T Consensus 648 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 648 HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11100 0 11223346677777777655443211110 011222223344455566666666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-05 Score=68.53 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=102.2
Q ss_pred CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCcccc
Q 020091 172 QPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLS 247 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~ 247 (331)
.....+.-+.-++..+ ++++++.|..||.+|.. .++++.|..-|++|... +++..+..+|.++....| ..+
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ 208 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQM 208 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Ccc
Confidence 3444556565565543 45899999999999997 89999999999999876 678888899988877665 779
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 248 HRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 248 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
..++...|++++.. .+..+.+.||..++.+|++.+|...++..++..+.+
T Consensus 209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 209 TAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999987 568899999999999999999999999999986543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=60.97 Aligned_cols=161 Identities=15% Similarity=0.040 Sum_probs=101.3
Q ss_pred hHHHHHHHH-hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCH---HHH
Q 020091 65 PFDVLNKIA-ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST---LAM 140 (331)
Q Consensus 65 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~---~a~ 140 (331)
.+.++.+.+ ..+..+...-|......+....+. .....-.-|..+.. .+++++|+++|...++.+-. .--
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~RV~~lkam~lEa----~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SKRVGKLKAMLLEA----TGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHH----hhchhhHHHHHHHHhccCcchhHHHH
Confidence 344444443 456778888888887777777654 44444445777777 89999999999888765411 112
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhc-CC
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHR-GR 206 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~-G~ 206 (331)
..++.+-..|++ -+||+-...-++.-..+. ..+++++|..+|++.+ .+-++.-.-.||.++.. |
T Consensus 125 RKlAilka~GK~-l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g- 202 (289)
T KOG3060|consen 125 RKLAILKAQGKN-LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG- 202 (289)
T ss_pred HHHHHHHHcCCc-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-
Confidence 344444433333 356655555555433332 5666667777776643 33566667789987644 3
Q ss_pred CCCCCHHHHHHHHHHHHHCCC--HHHHHHH
Q 020091 207 GVDFNLQEAARWYLRAAEGGY--VRAMYNT 234 (331)
Q Consensus 207 g~~~d~~~A~~~~~~A~~~~~--~~a~~~l 234 (331)
...++.-|.+||.+|++... ..+++.+
T Consensus 203 -g~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 203 -GAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred -hHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 27789999999999999854 4444444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-05 Score=63.20 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.-+..|..|.-+++ .|++++|...|+-.+..+ +++-++.||.++...+++++|+..|-.|..++.
T Consensus 36 ~le~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--------- 102 (165)
T PRK15331 36 MMDGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--------- 102 (165)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------
Confidence 45667888877777 799999999999887765 777788888899888888888888888887654
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
++|...+..|.||.. .++..+|..+|..+++.
T Consensus 103 ------------~dp~p~f~agqC~l~----l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 103 ------------NDYRPVFFTGQCQLL----MRKAAKARQCFELVNER 134 (165)
T ss_pred ------------CCCCccchHHHHHHH----hCCHHHHHHHHHHHHhC
Confidence 578888999999986 78899999999998875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=67.74 Aligned_cols=99 Identities=9% Similarity=0.066 Sum_probs=89.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAM 140 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~ 140 (331)
..+..+..++..|++..|...|..+++.-|+.. -+.|+|+||.+++. .+|++.|...|...++. .-|+++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 368888999999999999999999999988743 67899999999999 99999999999999875 378999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.||.+..+.++.++|...|++.+..-|.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999988764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-05 Score=67.90 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=73.7
Q ss_pred HHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 101 AMVLLRWGKRF-KHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 101 ~~a~~~LG~~y-~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
....|..+..+ .. .+++++|+..|+..+..- + +.+++.||.+|+..|++++|+..|++++...+...
T Consensus 142 e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~--- 214 (263)
T PRK10803 142 ANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP--- 214 (263)
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---
Confidence 45666666654 44 478888888888888652 2 57888888888888888888888888887654311
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
..+++++.+|.+|.. .+++++|+..|++.++.
T Consensus 215 ---------------~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 215 ---------------KAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ---------------chhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 357888888888875 67888888888888764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=68.82 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=94.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
.+-.+...+++.++|.+|+..|...++..| .++..+.+-+-.|.+ .+.++.|++-.+.|+..+ +..++..||
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~----Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSK----LGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHH----hcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344455567888999999998888888765 489999999999999 999999999999999987 778999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
..|..+|++++|+..|++|+++++.+. .+++.+.+-++.+.
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhc
Confidence 999999999999999999999988543 55555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0041 Score=56.24 Aligned_cols=214 Identities=10% Similarity=-0.062 Sum_probs=144.6
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHcCCCCC----------
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAG-LMYWEMDKKEAAISLYRQAAVLGDPAA---------- 171 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg-~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 171 (331)
...=|.+-.. .|||.+|.....++++.+ .|...+.+| ..-...||.+.|=.|..++.+..++..
T Consensus 87 ~~~egl~~l~----eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 87 ALNEGLLKLF----EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHh----cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3344555555 799999999999999988 444444444 444556999999999999999844333
Q ss_pred --CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---------------------
Q 020091 172 --QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--------------------- 226 (331)
Q Consensus 172 --~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--------------------- 226 (331)
..+|+..|..-..++.+. .++.+....-.+|.. .+++.....++.+..+.+
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 678888888888887765 578888777778776 667776666655543321
Q ss_pred -----------------------CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHH
Q 020091 227 -----------------------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 227 -----------------------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A 283 (331)
++.....++.-+.. -+++++|.++.+.+.......-...+.- ....++...=
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~L~~~~~-~l~~~d~~~l 313 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPRLCRLIP-RLRPGDPEPL 313 (400)
T ss_pred HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChhHHHHHh-hcCCCCchHH
Confidence 12222222222222 3477888888888877643333332222 2336677777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 284 VVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 284 ~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++..++.+...+.+++.++..+...+....-.+|...++..+...|+
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 77777777776666677777777788888999999999887665554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-06 Score=55.80 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.+|..+.. .+++++|+..|++++.. +++.+++.+|.++..+|++++|+.+|+++++..+.
T Consensus 2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45666655 44888888888888877 45778888888888888888888888888876654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00027 Score=69.03 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------------------CCHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------------------GSTLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------------------~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
..+|+.+..... .+|.+.|++||+++-.. .++.-+..-|..+...|+.+-|+.+
T Consensus 859 ~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 859 NTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence 356666666666 67788888888776211 2344445666666667778888887
Q ss_pred HHHHHHcCCCC---CCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 160 YRQAAVLGDPA---AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 160 ~~~a~~~~~~~---~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
|..|-+.-.-- ...++..+|-.+ |-+.|+-.|.|.||++|++ .++..+|+.+|.+|
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~i---A~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARI---AEESGDKAACYHLARMYEN----DGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHH---HHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence 77775432111 145555555543 2345899999999999998 88999999999998
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00058 Score=64.45 Aligned_cols=212 Identities=10% Similarity=0.026 Sum_probs=137.9
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--hCCCHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--ARGSTLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--~~~~~~a~~~l 143 (331)
.+.+..+..+...+++++|+..+.+++...++..++.-|-.++.| + ...|++|....++-- ..++... +.-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI--q----~~ky~~ALk~ikk~~~~~~~~~~~-fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI--Q----LDKYEDALKLIKKNGALLVINSFF-FEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh--h----hhHHHHHHHHHHhcchhhhcchhh-HHH
Confidence 456777777889999999999999999998775444444444444 4 678999986655422 2232222 688
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCCCCCH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASIAGH--VRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~G~g~~~d~ 212 (331)
++|.++.+..++|+..+. .++..++.. ..++|++|+..|+..++.+. .+.....+..-.. .
T Consensus 86 AYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a 157 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------A 157 (652)
T ss_pred HHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------H
Confidence 999999999999999998 333222211 67788888888888776543 3333322222111 1
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-------CC----------HHHHHHHHHH
Q 020091 213 QEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GH----------GKAQLEHGLG 273 (331)
Q Consensus 213 ~~A~~~~~~A~~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~----------~~a~~~Lg~~ 273 (331)
.-...+.+...+ .+..+.+||.+.++.. ..++.+|++.++.|... ++ ......|+++
T Consensus 158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 111123333322 3567788888888865 34888888888888321 11 1233568888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCH
Q 020091 274 LFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
+-.+|+.++|...|...+..+..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC
Confidence 88888888888888888776543
|
|
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.7e-06 Score=49.23 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS 136 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 136 (331)
+.+++.||.+|..|.|+..|..+|+.||++|++.|+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 368999999999999999999999999999998874
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-06 Score=49.14 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.++++||.+|..|.|+.+|..+|+.||++|++.|
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4566677776666666667777777777666654
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0012 Score=55.62 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=8.7
Q ss_pred ccCHHHHHHHHHHHHH
Q 020091 173 PANAEEAVKLLYQASI 188 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~ 188 (331)
..|+++|+.+|++|++
T Consensus 127 l~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00016 Score=64.37 Aligned_cols=192 Identities=19% Similarity=0.114 Sum_probs=134.0
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------CC---
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAM----VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GS--- 136 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~~--- 136 (331)
.-...++..+.+++++..+...++-+-+.+++. .+..||.+|-. .+|++||.-+..+|++. ++
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 334456677888888888888887777666654 67888888887 88999999888888764 22
Q ss_pred ---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCC
Q 020091 137 ---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 137 ---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~ 209 (331)
..+++.|+..+...|+.-.|.++.++|.++ ++..|+ +..+.-+|.+|.+ .
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl-------------------al~~Gdra~~arc~~~~aDIyR~----~ 259 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL-------------------ALQHGDRALQARCLLCFADIYRS----R 259 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-------------------HHHhCChHHHHHHHHHHHHHHHh----c
Confidence 235677888887778887787777776554 344454 4556789999998 8
Q ss_pred CCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHhcCCCccccH-----HHHHHHHHHHHHc----CCH----HHHH
Q 020091 210 FNLQEAARWYLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSH-----RQARKWMKRAADC----GHG----KAQL 268 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~--------~~~~~a~~~lg~~y~~g~g~~~~~-----~~A~~~~~~a~~~----~~~----~a~~ 268 (331)
+|.+.|+.-|++|.. .|...++...+.++.. .+-. =.|+++-+++++. |.. ..+.
T Consensus 260 gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~----~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hc 335 (518)
T KOG1941|consen 260 GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET----LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHC 335 (518)
T ss_pred ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 899999999999853 2456667777777643 1122 2366666665543 432 3446
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 020091 269 EHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.|+.+|...|.-++--..+.+|-+
T Consensus 336 rla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 336 RLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHhccchhHHHHHHHHHHH
Confidence 789999888877776666666543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.8e-05 Score=68.78 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-C----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G----------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
-.-|..|+. .+++..|..-|++|+.. + -..++.||+.||.+.+++.+|+.++.++++++
T Consensus 212 ke~Gn~~fK----~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 212 KERGNVLFK----EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHhhhHHHh----hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 334777888 78999999999988753 1 12467899999999999999999999999887
Q ss_pred CCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 168 DPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
+ +++.|+|.-|.+|.. .++++.|+..|++|++. ++-.+...|..|-.
T Consensus 288 ~---------------------~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 288 P---------------------NNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred C---------------------CchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7 689999999999986 78899999999999765 56666666666653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=70.64 Aligned_cols=164 Identities=15% Similarity=0.035 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CCccCHHHHHHHHHHHHHCCCHHHHH
Q 020091 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA-AQPANAEEAVKLLYQASIAGHVRAQY 196 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~a~~ 196 (331)
.|.+++|++.-+---....-..+++.+.-+...+|.+.|+++|+|+-...... ....++-++++.|-+ ...++.-+.
T Consensus 839 ~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~--~~~d~~L~~ 916 (1416)
T KOG3617|consen 839 QGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR--RKRDESLYS 916 (1416)
T ss_pred cccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH--hccchHHHH
Confidence 44444444433322222344567777777777888999999998863210000 022223333333322 224567777
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHH-----------------------CCCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAE-----------------------GGYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~-----------------------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.+|..++. .++.+-|+.+|..|-+ .|+.-|+|.||..|.+ ..+..+|..
T Consensus 917 WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~ 988 (1416)
T KOG3617|consen 917 WWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVK 988 (1416)
T ss_pred HHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHH
Confidence 88888876 7888888888887632 4788999999999976 348999999
Q ss_pred HHHHHHHcC----------CHHHH------------HHHHHHHhccC-CHHHHHHHHHHHH
Q 020091 254 WMKRAADCG----------HGKAQ------------LEHGLGLFTEG-EMMKAVVYLELAT 291 (331)
Q Consensus 254 ~~~~a~~~~----------~~~a~------------~~Lg~~~~~~~-~~~~A~~~~~~A~ 291 (331)
+|.+|-... -.+-. ...+.+|.+.| +..+|...|-+|-
T Consensus 989 FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 989 FFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence 999874321 12222 22344454555 7788888776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=63.08 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=80.8
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
+...+...+..|++++|..++.-+... +..++.-+..||-++.. .+++++|+..|..|... ++|...+.+|.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 355667789999999998887655543 45689999999999999 99999999999999865 59999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHc
Q 020091 146 MYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~ 166 (331)
||...++.++|+..|..+++.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999884
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.7e-05 Score=66.73 Aligned_cols=186 Identities=11% Similarity=-0.027 Sum_probs=126.1
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH--HHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA--GLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l--g~~~~~~~ 151 (331)
.+....++.+++++.....+..+ .+..++..||.||.+ ..++..|..+|++....---.+.|.+ +..+++.+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34566777777766665555544 356677888888888 78888888888887776555555443 23333445
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAM 231 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~ 231 (331)
.+..|+.......+... + -+...+..-+..|. .+|+..+..+.++-...|++...
T Consensus 93 i~ADALrV~~~~~D~~~-------------L-------~~~~lqLqaAIkYs-----e~Dl~g~rsLveQlp~en~Ad~~ 147 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPA-------------L-------HSRVLQLQAAIKYS-----EGDLPGSRSLVEQLPSENEADGQ 147 (459)
T ss_pred ccHHHHHHHHHhcCCHH-------------H-------HHHHHHHHHHHhcc-----cccCcchHHHHHhccCCCccchh
Confidence 55555444333221100 0 01112233344454 56788888888888777889999
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADC-G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
.+.|-+.++ ..+++.|..-|..|.+- | .+...++++.+++..|+++.|+++....++.|
T Consensus 148 in~gCllyk----egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 148 INLGCLLYK----EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred ccchheeec----cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 999988866 45999999999999876 3 46777899999999999999999988887654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.5e-05 Score=67.49 Aligned_cols=210 Identities=18% Similarity=0.119 Sum_probs=145.1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------Cc
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QP 173 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~ 173 (331)
.|..+.. .++|..|+..|..|++.. ++..+.+-+.++...+++++|..-+++.+.+.+... ..
T Consensus 55 ~gn~~yk----~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 55 EGNAFYK----QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hcchHHH----HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3444555 789999999999999986 677788899999999999999999999998877766 23
Q ss_pred cCHHHHHHHHHH---------------HHHCCC-HHH----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Q 020091 174 ANAEEAVKLLYQ---------------ASIAGH-VRA----QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAM 231 (331)
Q Consensus 174 ~~~~~A~~~~~~---------------a~~~~~-~~a----~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~ 231 (331)
.+..+|...|+- .+.... ..+ ...-+.|+.. .+++++|..---..+.. .+..+.
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~----~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF----LGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh----cccchhHHHHHHHHHhcccchhHHH
Confidence 333444433321 111111 122 2223344443 77888887766666554 567788
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH-
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--------------KAQLEHGLGLFTEGEMMKAVVYLELATRAGET- 296 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--------------~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~- 296 (331)
+--|.++.. ..+.++|...|.+++..+.. ..+-.-|.-.++.|++.+|.+.|..|+.+++.
T Consensus 207 ~vrg~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 207 YVRGLCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred Hhccccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 888888766 55999999999999988542 22344577778899999999999999998763
Q ss_pred ---HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 297 ---AADHVKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 297 ---~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
.+....+........+..++|+.--...++..
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 34445555555556666667766555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=72.76 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL---AMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+..++.+++++|.+|+. .+++++|+..|++|++.+ +++ +++|+|.+|...|+.++|+..|++|+++.
T Consensus 71 dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35688899999999988 899999999999998875 554 48999999999999999999999998873
|
|
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.3e-06 Score=49.67 Aligned_cols=36 Identities=39% Similarity=0.673 Sum_probs=21.9
Q ss_pred HHHHHHHH--HHHhcCC-CCCCCHHHHHHHHHHHHHCCC
Q 020091 192 VRAQYQLA--LCLHRGR-GVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 192 ~~a~~~lg--~~y~~G~-g~~~d~~~A~~~~~~A~~~~~ 227 (331)
++|+++|| .+|..|. |+.+|.++|++||++|++.|+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 35666666 5556666 566666666666666666553
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.4e-05 Score=54.31 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.++.++|.++...|++++|+.+|++|++.
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45577888888888888888888888753
|
... |
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.8e-06 Score=49.53 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.7
Q ss_pred HHHHHHHH--HHHhcCC-CCCCCHHHHHHHHHHHHhCCC
Q 020091 101 AMVLLRWG--KRFKHGR-GVRKNLDKALDSFLKGAARGS 136 (331)
Q Consensus 101 ~~a~~~LG--~~y~~g~-g~~~~~~~A~~~~~~A~~~~~ 136 (331)
|.+++.|| .+|..|. |+..|.++|+.||++|++.|+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57899999 8889999 899999999999999999885
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-05 Score=71.39 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=62.8
Q ss_pred HhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH---HHHHHHHHHhcCCCC
Q 020091 132 AARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR---AQYQLALCLHRGRGV 208 (331)
Q Consensus 132 ~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---a~~~lg~~y~~G~g~ 208 (331)
++-+++.+++++|..|...|++++|+..|++|+++++ ++++ +++|+|.+|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P---------------------d~aeA~~A~yNLAcaya~---- 124 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP---------------------NPDEAQAAYYNKACCHAY---- 124 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------------CchHHHHHHHHHHHHHHH----
Confidence 3446899999999999999999999999999999977 4664 49999999987
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q 020091 209 DFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~ 227 (331)
.++.++|+.+|++|++.++
T Consensus 125 LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 125 REEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCHHHHHHHHHHHHHhcc
Confidence 8899999999999999743
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00057 Score=57.76 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=96.8
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----CCHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTL 138 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~ 138 (331)
+......+...+..|++.+|...+..+....|... -+.+++.+|..|+. .+++++|+..|+.-+.. ..+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 45678888889999999999999999999887654 45799999999999 89999999999998875 2457
Q ss_pred HHHHHHHHHhcC-----------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 139 AMVDAGLMYWEM-----------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 139 a~~~lg~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
+++.+|.++... +...+|+..|+..+..-|... -..+|....... ....+.--+.+|..|..
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---y~~~A~~~l~~l-~~~la~~e~~ia~~Y~~--- 153 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---YAEEAKKRLAEL-RNRLAEHELYIARFYYK--- 153 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---THHHHHHHHHHH-HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---
Confidence 899999987653 223466777777776655322 222222222111 11122333455666655
Q ss_pred CCCCHHHHHHHHHHHHH
Q 020091 208 VDFNLQEAARWYLRAAE 224 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~ 224 (331)
.+.+.-|+..|+..++
T Consensus 154 -~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 154 -RGKYKAAIIRFQYVIE 169 (203)
T ss_dssp -TT-HHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHH
Confidence 5556666666666655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0032 Score=58.41 Aligned_cols=151 Identities=13% Similarity=-0.045 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
-+...++|..+..++..+.+++|+..++..+..-| +++..+-..+.++.. .++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P---------------------~N~~~~~~~~~i~~~----~nk~~ 357 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP---------------------DNPYYLELAGDILLE----ANKAK 357 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----cCChH
Confidence 36777888888888888888888888888665544 788888899999987 78899
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+|.+.+++++.. +......++|.+|..+. +..+|+..+...... .++..|..|+..|..+|+..+|...+..
T Consensus 358 ~A~e~~~kal~l~P~~~~l~~~~a~all~~g----~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 358 EAIERLKKALALDPNSPLLQLNLAQALLKGG----KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHhcC----ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 999999999886 45677889999998743 777999999998866 6789999999999999999999998877
Q ss_pred HHHc-C-CHHHHHHHHHHHhhhchhc
Q 020091 290 ATRA-G-ETAADHVKNVILQQLSATS 313 (331)
Q Consensus 290 A~~~-~-~~~a~~~l~~~~~~l~~~~ 313 (331)
.... | ...|...+.....++..+.
T Consensus 434 ~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 434 GYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 7654 4 4556655555555554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00018 Score=62.76 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM---DKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
.+|++.+..||.+|.. .+++..|...|.+|... .+++.+..+|.++... .+..++...|++++..++
T Consensus 153 P~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~---- 224 (287)
T COG4235 153 PGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP---- 224 (287)
T ss_pred CCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC----
Confidence 4566677777777777 67777777777777665 2666666666555443 244455555555555544
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.+..+.+.||..+.+ ++|+.+|+..++.-++.
T Consensus 225 -----------------~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 225 -----------------ANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDL 256 (287)
T ss_pred -----------------ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Confidence 466677777776665 66677777777666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0025 Score=54.80 Aligned_cols=122 Identities=9% Similarity=-0.031 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 210 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
...+-|..-+++..+.++...+..|+..|..--+....+..|..+|+.-.+. ..+......+.+++.++++++|...+
T Consensus 151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 3477888888888777666666667666643211122499999999998875 34667778899999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhchhcHHH-HHHHHHhhhcCCCCC
Q 020091 288 ELATRAGETAADHVKNVILQQLSATSRDR-AMLVVDSWRAMPSLH 331 (331)
Q Consensus 288 ~~A~~~~~~~a~~~l~~~~~~l~~~~~~~-a~~~~~~~~~~~~~~ 331 (331)
+.|++.++..+..+.+.+...+..|.-.+ ......+++..+|+|
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999876666666666654444443333 334456677777776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00028 Score=67.93 Aligned_cols=145 Identities=17% Similarity=0.015 Sum_probs=108.9
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC--------CCHHHHHHHH
Q 020091 91 WNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM--------DKKEAAISLY 160 (331)
Q Consensus 91 ~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~--------~~~~~A~~~~ 160 (331)
.....+...++-.+|.-|.-|... +..++..+|+.+|++|++.. ++.++..|+.+|... .+..++....
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345566667888899899877653 33677999999999999874 888888888877543 1345666667
Q ss_pred HHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHh
Q 020091 161 RQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYS 239 (331)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~ 239 (331)
+++..+... ..++.++.-+|.++.. .+++++|...|++|++.+ +..++..+|.++.
T Consensus 408 ~~a~al~~~-------------------~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~ 464 (517)
T PRK10153 408 DNIVALPEL-------------------NVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYE 464 (517)
T ss_pred HHhhhcccC-------------------cCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 776664211 1367778888888764 688999999999998863 5678889999987
Q ss_pred cCCCccccHHHHHHHHHHHHHcCC
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGH 263 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~ 263 (331)
. .++.++|..+|++|...+.
T Consensus 465 ~----~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 465 L----KGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred H----cCCHHHHHHHHHHHHhcCC
Confidence 6 4499999999999998844
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00033 Score=63.44 Aligned_cols=142 Identities=17% Similarity=0.032 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.-.-.-|+.|++.+++..|+.-|++|+..-+......+ ++.. .+..--..++.||+.||.. .+++.+|+.
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-ee~~-----~~~~~k~~~~lNlA~c~lK----l~~~~~Ai~ 278 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-EEQK-----KAEALKLACHLNLAACYLK----LKEYKEAIE 278 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-HHHH-----HHHHHHHHHhhHHHHHHHh----hhhHHHHHH
Confidence 33456788999999999999999999865332211111 1111 1111123456799999986 788999999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHH-HHHHHHHHHHH
Q 020091 218 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM-KAVVYLELATR 292 (331)
Q Consensus 218 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~-~A~~~~~~A~~ 292 (331)
+..++++. ++..|+|.-|.++.. ..+++.|+..|+++++. .+..+...|..+-.+..++. +....|.+...
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999875 789999999999975 34999999999999877 56777778877665555443 33566766654
Q ss_pred c
Q 020091 293 A 293 (331)
Q Consensus 293 ~ 293 (331)
.
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00055 Score=59.64 Aligned_cols=105 Identities=16% Similarity=0.076 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQA 186 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a 186 (331)
.+.+..|........+.. .....-.-+-+.+..+|+-.+..+.++-...+.... ..++++.|+.-|+.|
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 355555555554443332 111111222333455666666666665543222222 678888888888888
Q ss_pred HHC-C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 187 SIA-G-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 187 ~~~-~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.+- | .+...|+++.++.+ .+++..|+++....++.|
T Consensus 171 lqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERG 208 (459)
T ss_pred HhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhh
Confidence 775 3 56677788888776 678888888888777754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0015 Score=58.39 Aligned_cols=214 Identities=14% Similarity=0.032 Sum_probs=134.5
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHH-HHHHHHHHhcCCCCCCCHHHHHHHH----HHHHhCC----CH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMV-LLRWGKRFKHGRGVRKNLDKALDSF----LKGAARG----ST 137 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a-~~~LG~~y~~g~g~~~~~~~A~~~~----~~A~~~~----~~ 137 (331)
..+.....++...+..+++....+.+... .+... +..||.+-.-+ ...+.++++..+- .-+.+.. .-
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l---~~~~~Rf~~lG~l~~a~-s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKL---SDLMGRFRVLGCLVTAH-SEMGRYKEMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHH---HHHHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666778888888875544444443 33332 22233222111 0033344433221 1222333 33
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------------CccCHHHHHHHHHHHHHC----CCH----H
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------------QPANAEEAVKLLYQASIA----GHV----R 193 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~A~~~~~~a~~~----~~~----~ 193 (331)
+++.+|+.-+...-++.+++.+-.-...+....+ ...-+++++++|++|.+- +++ .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 5677888888777888888888776665532222 566788888888888653 333 3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC------CCHH------HHHHHHHHHhcCCCccccHHHHHHHHHHHH--
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYVR------AMYNTSLCYSFGEGLPLSHRQARKWMKRAA-- 259 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~------~~~~------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~-- 259 (331)
.+..||.+|.. .+|+++|.-+..+|++. ++.. +++.++..|.. .| ....|.++.++|.
T Consensus 164 vcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~-~G---~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 164 VCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL-LG---RLGDAMECCEEAMKL 235 (518)
T ss_pred hhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH-hc---ccccHHHHHHHHHHH
Confidence 57788888876 89999999999999773 4444 45566666633 34 5566666666654
Q ss_pred --HcCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 260 --DCGHG----KAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 260 --~~~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..|+. ....-+|.||...||.+.|+.-|+.|..
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 44664 3345799999999999999999999875
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=66.20 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC--------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR--------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---- 133 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~---- 133 (331)
...+-+..-.+-.|++..|........ .....| .-.++.+||.|+++ .+.+.-+..+|.+|..
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHHHHHHHHH
Confidence 344444444566788887754432111 111112 11245678888888 8888899999998874
Q ss_pred ---CC-------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 134 ---RG-------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 134 ---~~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
.| .-+..||+|..|...|++-.|.++|.+++..-...
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 11 34577899999999999999999999987653333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.013 Score=48.39 Aligned_cols=162 Identities=23% Similarity=0.206 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
......++..+.. .+++..+...+..+.. ......+..+|..+...+++.+++..+.++.......
T Consensus 59 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 128 (291)
T COG0457 59 AGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP------ 128 (291)
T ss_pred hHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------
Confidence 5677777888877 7888999888888874 3466777888888888888888888888888765432
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCccccHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQ 250 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~-~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~ 250 (331)
.......+. ++.. .+++++|..+|.++.... .......++..+.. ..+..+
T Consensus 129 ---------------~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 185 (291)
T COG0457 129 ---------------DLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEE 185 (291)
T ss_pred ---------------chHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHH
Confidence 111111111 3332 445555555555554421 11222222222211 225555
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 251 ARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 251 A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
|...+.++.... .......++..+...+++++|+..+..+....+
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 555555555441 134445555555555555555555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0004 Score=59.97 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.+||..|..-|..-++.. .++|+|+||.+++..|+++.|...|..++..
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 444555555555444431 3445555555555555555555555544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00026 Score=63.11 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
++......|.++.. .++++.|+..+.+. ++.++....-.+|...++++.|.+.++...+.++
T Consensus 101 ~~~~~~~~A~i~~~----~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e----------- 162 (290)
T PF04733_consen 101 NEIVQLLAATILFH----EGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE----------- 162 (290)
T ss_dssp HHHHHHHHHHHHCC----CCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC-----------
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------
Confidence 45566777788888 89999999999875 7889888888999999999999999988776643
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHh--c-CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLH--R-GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~--~-G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
.....+|+..+. . | ...+.+|...|+...+. ..+..++.++.++.. .+++++|...
T Consensus 163 ------------D~~l~qLa~awv~l~~g---~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~ 223 (290)
T PF04733_consen 163 ------------DSILTQLAEAWVNLATG---GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEEL 223 (290)
T ss_dssp ------------CHHHHHHHHHHHHHHHT---TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHH
Confidence 223334443332 2 3 25689999999998776 456677888888865 4599999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCC
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEM-MKAVVYLELATRAGE 295 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~-~~A~~~~~~A~~~~~ 295 (331)
+.+|... +++++..++..+....|+. +.+.+++.+.-...+
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999766 5678889999988888877 556667776655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00091 Score=51.19 Aligned_cols=96 Identities=24% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
-|.++...|+.+.|++.|.+++.+.| ..+.+++|-+..|.- +++.++|+.-+++|
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P---------------------~raSayNNRAQa~RL----q~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAP---------------------ERASAYNNRAQALRL----QGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcc---------------------cchHhhccHHHHHHH----cCChHHHHHHHHHH
Confidence 46677788899999999998888766 478899999999875 78899999999999
Q ss_pred HHC-CC-----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHH
Q 020091 223 AEG-GY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 267 (331)
Q Consensus 223 ~~~-~~-----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 267 (331)
++. |+ -.++..-|.+|.. ..+.+.|..-|+.|++.|.+-+.
T Consensus 104 leLag~~trtacqa~vQRg~lyRl----~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 104 LELAGDQTRTACQAFVQRGLLYRL----LGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHhcCccchHHHHHHHHHHHHHHH----hCchHHHHHhHHHHHHhCCHHHH
Confidence 875 22 1233444555532 22555555555555555554444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0099 Score=61.58 Aligned_cols=191 Identities=11% Similarity=0.005 Sum_probs=115.0
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-----CH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHH-HH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLR-----EA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTL-AM 140 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~-a~ 140 (331)
+++..+.+++.++.+.|..++.+.+....--. |. .|+.+|-..| |.-+.-.+.|++|+..-++. .+
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-------G~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-------GTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-------CcHHHHHHHHHHHHHhcchHHHH
Confidence 34444444555555555555555544431100 00 1333333333 33444455555555544332 34
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
..|.-+|...+.+++|.++|+.-++.-- .....|..+|..+.. ..+-+.|...+.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~---------------------q~~~vW~~y~~fLl~----~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG---------------------QTRKVWIMYADFLLR----QNEAEAARELLK 1588 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc---------------------chhhHHHHHHHHHhc----ccHHHHHHHHHH
Confidence 4455555555555555555444433210 367788899998876 555688899999
Q ss_pred HHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 221 RAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 221 ~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+|+.. .+.......+.+-+. .| |.+.+...|+-.+... ..+.|.-+...-...|+.+.....|+|+++.+
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk-~G---DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFK-YG---DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhh-cC---CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99864 566766677776644 33 8889999998877664 45666666666677889999999999999875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0012 Score=58.79 Aligned_cols=191 Identities=13% Similarity=0.028 Sum_probs=120.7
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhcC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--TLAMVDAGLMYWEM 150 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~~~~~ 150 (331)
-+.+...++..|......-. ..-+.........+|.||++ .+||++|..-|+-+.+..+ .+...+|+-|++-.
T Consensus 30 edfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence 34567888899965554322 22222344677889999999 9999999999998887764 45578999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHH
Q 020091 151 DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA 230 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a 230 (331)
|.+.+|...-.++.+..- ...-+++++.-+ +|- +-+--|...+.. ...-
T Consensus 105 g~Y~eA~~~~~ka~k~pL----------------------~~RLlfhlahkl-------ndE-k~~~~fh~~LqD-~~Ed 153 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPKTPL----------------------CIRLLFHLAHKL-------NDE-KRILTFHSSLQD-TLED 153 (557)
T ss_pred HHHHHHHHHHhhCCCChH----------------------HHHHHHHHHHHh-------CcH-HHHHHHHHHHhh-hHHH
Confidence 888888777666543210 123344444432 233 333334443332 2233
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CC-HHHHHHHH
Q 020091 231 MYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRA-GE-TAADHVKN 303 (331)
Q Consensus 231 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~-~~a~~~l~ 303 (331)
+..|+-+.+. .-.+++|+..|++...-+ ....-..++.||++..-++-+...+..-+.. ++ ..|..+..
T Consensus 154 qLSLAsvhYm----R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 154 QLSLASVHYM----RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHhHHHHHHH----HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3444444322 236889999999987653 2333457899999999999988888877765 33 44443333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0099 Score=53.20 Aligned_cols=136 Identities=10% Similarity=-0.029 Sum_probs=76.6
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~ 153 (331)
.+..|++++|...|.-... .+..+++...+|+.+++. .|.|.+|...-.+|.+.. ...-+++|+. +.+|-
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~Fy----Lg~Y~eA~~~~~ka~k~pL~~RLlfhlah---klndE 137 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFY----LGQYIEAKSIAEKAPKTPLCIRLLFHLAH---KLNDE 137 (557)
T ss_pred HHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHH----HHHHHHHHHHHhhCCCChHHHHHHHHHHH---HhCcH
Confidence 5788999999988876665 445677888899999998 899999988877776543 2222334432 33443
Q ss_pred HHHHHHHHHHHHc----CCCCC----CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVL----GDPAA----QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 154 ~~A~~~~~~a~~~----~~~~~----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
++-.. |...+.. .-..+ ..-.|.+|+..|++.+.. +....-.+++.||.. ..-++-+.+.+.--+
T Consensus 138 k~~~~-fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK----lDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILT-FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK----LDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHH-HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh----cchhhhHHHHHHHHH
Confidence 33332 3222211 00000 345566666666665543 222233356666653 223444544444444
Q ss_pred H
Q 020091 224 E 224 (331)
Q Consensus 224 ~ 224 (331)
.
T Consensus 213 ~ 213 (557)
T KOG3785|consen 213 R 213 (557)
T ss_pred H
Confidence 4
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=50.22 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
|..+|.+ .+++++|++++++++..+ ++..++..|.++...|++++|+..|+++++..+.
T Consensus 1 l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3567777 899999999999999885 8888999999999999999999999999988763
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.026 Score=54.27 Aligned_cols=211 Identities=15% Similarity=0.046 Sum_probs=137.4
Q ss_pred cCCchHHHhHHHHHHHHHHhCC---CC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRP---LR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGL 145 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~---~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~ 145 (331)
+..|+..+-...|....+..-. .| -...+..+|.+|.. .++.+.|...|++|.... .+..+++-|.
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 4455555555555555554321 12 23467789999999 899999999999999874 3556788888
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-----------------------------CccCHHHHHHHHHHHHHC--CCHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA-----------------------------QPANAEEAVKLLYQASIA--GHVRA 194 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------------~~~~~~~A~~~~~~a~~~--~~~~a 194 (331)
+-....+++.|+.+.++|........ .-+.++.....|.+.+++ --|..
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi 513 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI 513 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH
Confidence 88888999999999999986643311 345555566667777765 46777
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCH---HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHH--
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL-- 268 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~---~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~-- 268 (331)
..|.|+.+++ ..-+++|++.|++-+.. ..+ +.+...=..+....| ....+.|...|++|++.-.+...-
T Consensus 514 i~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 514 IINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred HHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7888888876 45688888888887765 221 112111011111111 237888889999998864444332
Q ss_pred --HHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 269 --EHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 269 --~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
..+.+-..-|--..|+..|++|...-.
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 234433445667777777877766543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0095 Score=50.68 Aligned_cols=176 Identities=20% Similarity=0.257 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G 167 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~ 167 (331)
-+..+..-+..|.. .+++++|...+.+|++. + -+.++-..|.+......+.|++.+|++|+.+ |
T Consensus 30 aas~yekAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 30 AASLYEKAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred hHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 34555556677777 89999999999999843 1 1234455666666678888888888888754 4
Q ss_pred CCCC------------CccCHHHHHHHHHHHHHC---CC-H----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH---
Q 020091 168 DPAA------------QPANAEEAVKLLYQASIA---GH-V----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--- 224 (331)
Q Consensus 168 ~~~~------------~~~~~~~A~~~~~~a~~~---~~-~----~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~--- 224 (331)
.+.. ...++++|+.+|++++.. ++ . +-+..++++|.. .+.+++|...+.+-..
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHHHHhhhHHH
Confidence 4443 567888899999887642 22 1 222334455544 4567777766665421
Q ss_pred -C---CC-HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 225 -G---GY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 225 -~---~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
. +. -.+...+-.+|.. ..|+..|..+|+...+.+. ..++-+|-. .++.||.++....+.
T Consensus 182 ~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 182 KCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEIKKVLS 251 (308)
T ss_pred HHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHHHHHHc
Confidence 1 11 1223333333333 4488888888888776532 334445433 466888877766554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.06 Score=50.17 Aligned_cols=183 Identities=14% Similarity=0.015 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------------------CccCHHHHHHHHHHHHHC-----
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------------QPANAEEAVKLLYQASIA----- 189 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------------~~~~~~~A~~~~~~a~~~----- 189 (331)
+-++++..-.+....|+.+.-.+.|++|+..-++.. ..+|.+.+...|+..++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 567777776777777899999999999988777654 678888888888887764
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC-
Q 020091 190 -GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH- 263 (331)
Q Consensus 190 -~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 263 (331)
..+..+...+..-.+ +.|.+.|.+.+-.|+-.-.- ..+-.|-.- .++++.-...|++-++-++
T Consensus 401 FtFaKiWlmyA~feIR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq-------L~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIR----QLNLTGARKILGNAIGKCPKDKLFKGYIELELQ-------LREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred chHHHHHHHHHHHHHH----HcccHHHHHHHHHHhccCCchhHHHHHHHHHHH-------HhhHHHHHHHHHHHHhcChH
Confidence 234444444444433 55677777777776543111 111111111 2367777777777776643
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 264 -GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 264 -~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
..++...|.+-...|+.+.|...|+.|+.... ..-..+-..+--..+.++.+++..++++++.+.+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 44556667766778888888888888877642 2223344445556677777888888888776544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.004 Score=57.74 Aligned_cols=107 Identities=15% Similarity=0.007 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHH
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 252 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 252 (331)
.++.|+.++++..+. ++++...|+.++.. .++..+|++.+.+++.. .+...+...+..+.. .++++.|+
T Consensus 184 ~~~~ai~lle~L~~~-~pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lAL 254 (395)
T PF09295_consen 184 RYDEAIELLEKLRER-DPEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELAL 254 (395)
T ss_pred cHHHHHHHHHHHHhc-CCcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHH
Confidence 344444444443333 46677789998875 56789999999999975 456677777777766 44899999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 253 KWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 253 ~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
...++|+.. ..-..|+.|+.+|...|++++|+..+...
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999988 45678999999999999999999777643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0022 Score=49.20 Aligned_cols=99 Identities=19% Similarity=0.091 Sum_probs=81.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CC-----HHHHH
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GH-----GKAQL 268 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~-----~~a~~ 268 (331)
.-|.+..+ .++.+.|++.|.+|+.. ..+.+++|-+..|.- .++.++|+.-+.+|++. |. ..++.
T Consensus 48 l~~valaE----~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 48 LKAIALAE----AGDLDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHh----ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34555555 57899999999999875 688999999999854 55999999999999987 33 24567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 269 EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
.-|.+|...|+.+.|..-|+.|++.|+.-|...+-
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHH
Confidence 88999999999999999999999999987765543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0022 Score=59.43 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=82.2
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A 156 (331)
+.++.|..++.++.+. +++....|+.++.. .++..+|++.+.+++... +...+...+.++...++++.|
T Consensus 183 ~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~----~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRER-----DPEVAVLLARVYLL----MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHh----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 5677776666665554 34455667777776 567778888888887653 666666777777777777777
Q ss_pred HHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
+...++++...| .+-..|+.|+.+|.. .+|+++|+-.++..
T Consensus 254 L~iAk~av~lsP---------------------~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSP---------------------SEFETWYQLAECYIQ----LGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCc---------------------hhHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Confidence 777777777765 588999999999997 89999999887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=48.18 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+++++|+.+|++++.. +++++.+.||.+|...|++++|...+.++....+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46777777777777665 3777777777777777777777777777776654
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00093 Score=46.12 Aligned_cols=58 Identities=24% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
..+|...+++++|+.++++++..+| +++..++..|.+|.. .+++.+|++.|++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p---------------------~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP---------------------DDPELWLQRARCLFQ----LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc---------------------ccchhhHHHHHHHHH----hccHHHHHHHHHHHH
Confidence 4567777777777777777777765 478888888888876 778888888888887
Q ss_pred HCC
Q 020091 224 EGG 226 (331)
Q Consensus 224 ~~~ 226 (331)
+.+
T Consensus 57 ~~~ 59 (73)
T PF13371_consen 57 ELS 59 (73)
T ss_pred HHC
Confidence 753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.054 Score=44.59 Aligned_cols=197 Identities=21% Similarity=0.135 Sum_probs=138.4
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH-H
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL-M 146 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~-~ 146 (331)
.........+.+..+...+...............++.+|.++.. .+++.+++..+.++.... ........+. +
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEA----LGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH----HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344455667777765555444321234567788889999988 789999999999999854 3344555555 8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG- 225 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~- 225 (331)
+...+++++|+..|.+++...+. ..........++..+.. .+++.+|+..+.++...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPE------------------LNELAEALLALGALLEA----LGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC------------------ccchHHHHHHhhhHHHH----hcCHHHHHHHHHHHHhhC
Confidence 88999999999999999764321 00133344444444443 56788999999988775
Q ss_pred -C-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 226 -G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 226 -~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
. .......++..+.. ..++.+|...+..+..... ......++..+...++++++...+.++......
T Consensus 198 ~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 198 PDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3 35778888888865 3378899999998887744 466777777777677799999999998887664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.071 Score=45.92 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+.-+|.=|.--.+ .||+++|+.+|+.....- ...+++.++..+++.+++++|+....+-+.+.+...
T Consensus 32 ~p~~~LY~~g~~~L~----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-- 105 (254)
T COG4105 32 LPASELYNEGLTELQ----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-- 105 (254)
T ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC--
Confidence 356667777777777 799999999998877652 467889999999999999999999988888765321
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHH
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLR 221 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~-g~~~d~~~A~~~~~~ 221 (331)
+-..++|..|.++..+. .+.+|..-+...|..
T Consensus 106 ----------------n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~ 138 (254)
T COG4105 106 ----------------NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAA 138 (254)
T ss_pred ----------------ChhHHHHHHHHHHhccCCccccCHHHHHHHHHH
Confidence 34567888888887765 345666655444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.02 Score=54.99 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHhC-------CCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------------Ccc
Q 020091 118 RKNLDKALDSFLKGAAR-------GST-LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------------QPA 174 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~~~-~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~ 174 (331)
.++..+-+.-|..|+.. |.+ .-+..+|.+|...|+.+.|...|++|....-+.. ..+
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999865 433 4578999999999999999999999987755443 677
Q ss_pred CHHHHHHHHHHHHHC----------CC----------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Q 020091 175 NAEEAVKLLYQASIA----------GH----------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY 232 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~----------~~----------~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~ 232 (331)
+++.|+.+.++|.-. |. ...+..++.+-+. .+-++.-...|.+.++. -.+..-.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqii~ 515 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQIII 515 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888888887532 11 1112222222221 23355556667777665 4555666
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHcCCHH----HHH---HHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK----AQL---EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI 305 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~---~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~ 305 (331)
|.|..+.. -+-++++++.|++.+..-.+. .+. .-..--+.....+.|...|++|++.-++.....+-.+
T Consensus 516 NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 516 NYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777755 345678888888877763222 221 1111123344788888888888886666666655555
Q ss_pred Hhhhch--hcHHHHHHHHHhhh
Q 020091 306 LQQLSA--TSRDRAMLVVDSWR 325 (331)
Q Consensus 306 ~~~l~~--~~~~~a~~~~~~~~ 325 (331)
+.+++. |-...++.++++..
T Consensus 592 YA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 555533 34556666666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00047 Score=42.67 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 200 (331)
|.+++.||..|...|++++|+.+|+++++..| +++.++..||.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P---------------------~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP---------------------DDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---------------------CCHHHHHHhhh
Confidence 46788999999999999999999999999877 58888888875
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00059 Score=46.40 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 246 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 246 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
+++++|+..|+++... ++.++.+.||.+|...|++++|...++++....+.+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4888899999988766 678888899999999999999999999888776553
|
... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.1 Score=48.68 Aligned_cols=233 Identities=12% Similarity=-0.023 Sum_probs=120.5
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A 156 (331)
.|+...|.+++.+|+.-.|+ -.++...=..-.+ .+..+.|...|++=+-.. ....+...+.+-.+.|+..-|
T Consensus 154 LgNi~gaRqiferW~~w~P~---eqaW~sfI~fElR----ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPD---EQAWLSFIKFELR----YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred hcccHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH----hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 47888898999999887665 2333222222222 355666666666654332 334444444444445555555
Q ss_pred HHHHHHHHHcCCCCC--------------CccCHHHHHHHHHHHHH----------------------------------
Q 020091 157 ISLYRQAAVLGDPAA--------------QPANAEEAVKLLYQASI---------------------------------- 188 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~--------------~~~~~~~A~~~~~~a~~---------------------------------- 188 (331)
...|++|++.--... ..+.++.|..+|+-|++
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 566655554311111 23333333333333322
Q ss_pred ------------CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHH---------HHHHHHHHhcCCCcccc
Q 020091 189 ------------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA---------MYNTSLCYSFGEGLPLS 247 (331)
Q Consensus 189 ------------~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a---------~~~lg~~y~~g~g~~~~ 247 (331)
+-+-++++.+-.+-.. .+|.+.-.+.|++|+..-.+.. +..+-++++.-. ..+|
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl-e~ed 381 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL-EAED 381 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 1234555554444443 4677788888888876533211 223333332211 2567
Q ss_pred HHHHHHHHHHHHHc-CC-----HHHHHHHHHHHhc---------------------------------cCCHHHHHHHHH
Q 020091 248 HRQARKWMKRAADC-GH-----GKAQLEHGLGLFT---------------------------------EGEMMKAVVYLE 288 (331)
Q Consensus 248 ~~~A~~~~~~a~~~-~~-----~~a~~~Lg~~~~~---------------------------------~~~~~~A~~~~~ 288 (331)
.+.+...|+.+++. .+ ...+...+..... .++++.....|+
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888777664 11 1112222222222 446666677777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 289 LATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 289 ~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
+-++.++.++..+..........++.+++..++.
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7777776666555555554444555555555554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.065 Score=44.98 Aligned_cols=181 Identities=13% Similarity=0.034 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
-+..++.-|.+|.+ .|=..-|..-|.++.... .|++...||..+...|+++.|.+.|....++++...
T Consensus 64 RA~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 64 RAQLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 35556777777777 777778888888877664 788888888888888999999999988888877654
Q ss_pred -----CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHhcCC
Q 020091 172 -----QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G-YVRAMYNTSLCYSFGE 242 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~-~~~a~~~lg~~y~~g~ 242 (331)
-.+.+.-|..-+.+--. +.+|- .-=.+|..- ..-|+.+|..-+.+-++. + ....++-.+.++ |.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLYl~E--~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL--gk 212 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF---RSLWLYLNE--QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL--GK 212 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChH---HHHHHHHHH--hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH--hh
Confidence 34445555444444322 23331 111233221 145677776555444333 2 222333333332 11
Q ss_pred CccccHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 243 GLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 243 g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
- ..+..++-...-+.. --.++++.||..+...|+.++|...|+.|+.++
T Consensus 213 i---S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 I---SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred c---cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 111111111111111 124678899999999999999999999998764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.054 Score=44.40 Aligned_cols=152 Identities=12% Similarity=-0.026 Sum_probs=97.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHH
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQ 185 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~ 185 (331)
++....+ .-|++....-..+..+.- ...-.+.||....+.|++.||...|++++.---.
T Consensus 62 ~~~a~~q----~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA---------------- 121 (251)
T COG4700 62 LLMALQQ----KLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA---------------- 121 (251)
T ss_pred HHHHHHH----hcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC----------------
Confidence 4444444 344544444333333322 3444567888888888888888888887754222
Q ss_pred HHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 186 ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 186 a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++..+..++..... .+++..|...+++..+. ..++.+..+|..|.. .| .+.+|...|+.++..
T Consensus 122 ----~d~a~lLglA~Aqfa----~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g---~~a~Aesafe~a~~~ 189 (251)
T COG4700 122 ----HDAAMLLGLAQAQFA----IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QG---KYADAESAFEVAISY 189 (251)
T ss_pred ----CCHHHHHHHHHHHHh----hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cC---CchhHHHHHHHHHHh
Confidence 456666666666654 56788888888777664 345667777888754 23 677777778887776
Q ss_pred -CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 262 -GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
..+.+....+..+.++|+..+|..-|...
T Consensus 190 ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 190 YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45677777777777788777666555433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.011 Score=46.26 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
..+..+|.-|.-... .+++..|++.|+..-.. | ...+.+.||..|+..+++++|+..+++-+.+.|...
T Consensus 8 ~~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-- 81 (142)
T PF13512_consen 8 KSPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-- 81 (142)
T ss_pred CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--
Confidence 356677778877777 78888888888877654 2 567888899999999999999998888888876422
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
..+.|+|..|.++..
T Consensus 82 ----------------~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 82 ----------------NVDYAYYMRGLSYYE 96 (142)
T ss_pred ----------------CccHHHHHHHHHHHH
Confidence 345677778877654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0059 Score=47.85 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=71.3
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STL 138 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~ 138 (331)
+.++...+...+..|++.+|...+..+...-|-.. -..+...||..|+. .+++++|+..+++=+++. -+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 66778889999999999999988888877776544 45789999999999 999999999999999874 456
Q ss_pred HHHHHHHHHhcCCC
Q 020091 139 AMVDAGLMYWEMDK 152 (331)
Q Consensus 139 a~~~lg~~~~~~~~ 152 (331)
+++..|.++....+
T Consensus 86 a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHhh
Confidence 89999999887644
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00068 Score=39.07 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+++.+|.++...|++++|+.+|++++.+.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456778888888888888888888888877653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0007 Score=39.15 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
+.+++++|.+|...+++++|+..|++++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 45778888888888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.061 Score=44.09 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC----CHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----HGKA 266 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a 266 (331)
-.+.||....+ .+++.+|...|.+++.- +++..+..++...+. ..+...|...++...+-. .++.
T Consensus 91 nr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 91 NRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----IQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHhhcCCccCCCCc
Confidence 35678888876 78999999999999874 788888888888765 458889999988887653 4688
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhc--hhcHHHHHHHHHhhhcCCC
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQLS--ATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~-~~~~a~~~l~~~~~~l~--~~~~~~a~~~~~~~~~~~~ 329 (331)
+..+|..|...|.++.|...|+.++.. ....+...++.++.... ....++..++++.+++..|
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 899999999999999999999999985 44555555666554443 4455566677787776655
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.066 Score=45.70 Aligned_cols=193 Identities=16% Similarity=0.092 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHhC-------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHC
Q 020091 118 RKNLDKALDSFLKGAAR-------G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIA 189 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~ 189 (331)
..|++-|...|.+|+.. . -.+++..-...|......--|.+.|++++-+-. ....+.+++.+|++|+..
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak---e~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK---ELSKLSEVVDLYEKASEL 100 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 57788888877777621 0 011222222234334444444444444433211 456678888899998653
Q ss_pred ----CCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CC--HHHHH---HHHHHHhcCCCccccHHHHHH
Q 020091 190 ----GHVR----AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GY--VRAMY---NTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 190 ----~~~~----a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~---~~--~~a~~---~lg~~y~~g~g~~~~~~~A~~ 253 (331)
|.++ +.-.-|.+.+ ..++++|+.+|++++.. ++ -.+.- ..+.+|.. .+.+++|..
T Consensus 101 Y~E~GspdtAAmaleKAak~le-----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~ 171 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALE-----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAAT 171 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHH
Confidence 5433 3334555565 46799999999999753 22 22322 33334433 346666666
Q ss_pred HHHHHHHc-----CCH-HHHHHHHHH--HhccCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 254 WMKRAADC-----GHG-KAQLEHGLG--LFTEGEMMKAVVYLELATRAG---ETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 254 ~~~~a~~~-----~~~-~a~~~Lg~~--~~~~~~~~~A~~~~~~A~~~~---~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
.+.+-... ... .....+|.+ |....|+..|...|+.-..++ .++-...+..++.-...+|.+++..+..
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 66653211 111 111234433 444669999999999877654 2344444555566667777777665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=38.15 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 264 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 264 ~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
+.+++++|.+|...|++++|+.+|++|++.++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357889999999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0019 Score=52.45 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH--HCCCHH
Q 020091 121 LDKALDSFLKGAARG--STLAMVDAGLMYWEM---DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS--IAGHVR 193 (331)
Q Consensus 121 ~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~ 193 (331)
++.|++.++.....+ +++++++-|..+.+. ....++...++.|+ .=|++|+ +++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAi----------------sK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAI----------------SKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH----------------HHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH----------------HHHHHHHhcCCchHH
Confidence 456777777665554 778888888777665 23234444444333 2244432 347899
Q ss_pred HHHHHHHHHhc-CCCCCCC-------HHHHHHHHHHHHHCCCHHHHHH
Q 020091 194 AQYQLALCLHR-GRGVDFN-------LQEAARWYLRAAEGGYVRAMYN 233 (331)
Q Consensus 194 a~~~lg~~y~~-G~g~~~d-------~~~A~~~~~~A~~~~~~~a~~~ 233 (331)
|+++||++|.. |. ...| +++|..+|++|.+.+.....|+
T Consensus 71 Alw~lGnA~ts~A~-l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 71 ALWCLGNAYTSLAF-LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999864 32 1223 4455555555555444433333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.13 Score=43.23 Aligned_cols=164 Identities=15% Similarity=0.056 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----- 171 (331)
.-|..+..||..+.. .+|++-|.+.|.-..+.+ .-.+..|-|..++-+|++.-|..-+.+--..++.+.
T Consensus 97 ~m~~vfNyLG~Yl~~----a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 97 DMPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred CcHHHHHHHHHHHHh----cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 468889999999998 999999999999988875 677889999999999999999888777766655554
Q ss_pred -----CccCHHHHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C-------CHHHH
Q 020091 172 -----QPANAEEAVKLLYQASIAGH------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-------YVRAM 231 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~-------~~~a~ 231 (331)
..-|+.+|..-+.+-++.-+ .-..+.||.+-. + ..++++.+- + -...+
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~---------e---~l~~~~~a~a~~n~~~Ae~LTEty 240 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE---------E---TLMERLKADATDNTSLAEHLTETY 240 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH---------H---HHHHHHHhhccchHHHHHHHHHHH
Confidence 56677777665554433322 222233333221 1 122222111 1 25678
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHcC------CHHHHHHHHHHHhccCCHHH
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADCG------HGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~~~~~~~ 282 (331)
+.||..|.. .++..+|...|+.|+..+ +.-|.+.|+.+.-.+.+..+
T Consensus 241 FYL~K~~l~----~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 241 FYLGKYYLS----LGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHHHhc----cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence 899999965 449999999999998753 23455666666555544444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0016 Score=37.40 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 264 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 264 ~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
+.+++.+|.+++..|++++|+.+|+++++..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.28 Score=45.14 Aligned_cols=171 Identities=12% Similarity=0.019 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWE---MDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~~~~~ 170 (331)
.++...+|=..|.. .+||+.-+.+.+..-.. ..+...+..|..+-+ .|+.++|+..+..++....
T Consensus 140 s~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-- 213 (374)
T PF13281_consen 140 SPDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-- 213 (374)
T ss_pred ChhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC--
Confidence 45566667677877 78888888888766544 255566677777766 4566666666655443322
Q ss_pred CCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHH-hcCCC
Q 020091 171 AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG-----RGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCY-SFGEG 243 (331)
Q Consensus 171 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G-----~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y-~~g~g 243 (331)
..+++.+..+|.+|..- ..-....++|+.||+++-+.. +.-+=-|++.++ ..|..
T Consensus 214 ------------------~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 214 ------------------NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred ------------------CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc
Confidence 14789999999998641 112345889999999998763 222222344433 33432
Q ss_pred ccccHHHHHHHH----HHHHHcCC---HHHHH---HHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 244 LPLSHRQARKWM----KRAADCGH---GKAQL---EHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 244 ~~~~~~~A~~~~----~~a~~~~~---~~a~~---~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.. ...+....- ....+.|. ...+. .++.+..-.+|+++|..+++++....+
T Consensus 276 ~~-~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 276 FE-TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cc-chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 22 222222222 11122222 22222 344445558999999999999998753
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0021 Score=39.68 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
|.+++.||..|.. .|++++|+.+|+++++. +++.++..||.
T Consensus 1 p~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678899999999 99999999999999987 49999988875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.071 Score=51.02 Aligned_cols=112 Identities=19% Similarity=0.111 Sum_probs=76.2
Q ss_pred ccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCc
Q 020091 173 PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~------~~~a~~~lg~~y~~g~g~ 244 (331)
..+.+.|..++..... ++.+--.+.-|+++.. .+|.++|+++|+++++.. .....+.+++++..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~---- 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF---- 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----
Confidence 4556666666666555 3555666677777765 778888888888876531 23346677777755
Q ss_pred cccHHHHHHHHHHHHHcCCH-HHH--HHHHHHHhccCCH-------HHHHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADCGHG-KAQ--LEHGLGLFTEGEM-------MKAVVYLELATR 292 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~~~~-~a~--~~Lg~~~~~~~~~-------~~A~~~~~~A~~ 292 (331)
..++++|..+|.+..+...+ .+. |..|.|+...++. ++|..++.++-.
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55888888888888877543 443 4567777777777 777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0011 Score=38.50 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHhCC--CHHHHHHHHHHHhcCCCHHHHH
Q 020091 128 FLKGAARG--STLAMVDAGLMYWEMDKKEAAI 157 (331)
Q Consensus 128 ~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~ 157 (331)
|++|++.+ ++.++++||.+|...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777664 7777888888877777777775
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.25 Score=51.84 Aligned_cols=172 Identities=13% Similarity=0.037 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR----------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
..+.++|.+..++|+.. +...|++||=++| |.-+.-.+.|++|+..
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqy--------------------- 1526 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQY--------------------- 1526 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHh---------------------
Confidence 67888999999988753 2334555555555 3344444555555544
Q ss_pred HCCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---
Q 020091 188 IAGHV-RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 261 (331)
Q Consensus 188 ~~~~~-~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 261 (331)
.++ ..+..|.-+|.. ...+++|.++|++-++. + ....|...|..+.. ..+-+.|...+.+|+..
T Consensus 1527 --cd~~~V~~~L~~iy~k----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEK----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred --cchHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcch
Confidence 343 456678888886 56799999999999876 5 56678888887765 23557888888898765
Q ss_pred -CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 262 -GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+.+..-..+.+-++.||-+.+...|+-.+...+..-..+...+-..+..++.+.+..+|++
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 35566667788889999999999888877776655555555555555554444444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0025 Score=37.45 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0031 Score=37.07 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999664
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0017 Score=37.74 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHH
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
|++|++. +++.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6677766 67888888888888888888875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.18 Score=48.34 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=106.6
Q ss_pred CccCHHHHHHHHHHHHHCCCHH---H-----HHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 172 QPANAEEAVKLLYQASIAGHVR---A-----QYQLALCLHRGR-GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~---a-----~~~lg~~y~~G~-g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
-.+|.+.++..+.++.+.++.. + .|+++....-|. +...+...|.+.+...... +..--.+.-|.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5678888888888887754322 1 233333333332 1367888999999988773 566667788888854
Q ss_pred CCCccccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhchhc
Q 020091 241 GEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATS 313 (331)
Q Consensus 241 g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~~~l~~~~~~l~~~~ 313 (331)
.++.++|+.+|.++..... .-..+.+|+++.-+.++++|..++.+..+.. -..+.+.+-.....+..++
T Consensus 280 ----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 280 ----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred ----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 5599999999999875322 2345789999999999999999999999864 4567777766666666666
Q ss_pred H-------HHHHHHHHhh
Q 020091 314 R-------DRAMLVVDSW 324 (331)
Q Consensus 314 ~-------~~a~~~~~~~ 324 (331)
. ++|.+.++++
T Consensus 356 ~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKV 373 (468)
T ss_pred chhhhhhHHHHHHHHHHH
Confidence 6 6676666664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.031 Score=47.48 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
..++++|++-|..|+-. + .+..+..+|.+|...++.+....++++|+ ..|.+|.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al----------------~~y~~a~~ 153 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL----------------EFYEEAYE 153 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH----------------HHHHHHHH
Confidence 77888999988888632 1 23456789999999999777777776654 45666654
Q ss_pred C--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 189 A--------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 189 ~--------~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
. +....+|.+|.++.+ .+++++|.+||.+.+..+
T Consensus 154 ~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 154 NEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred hCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCC
Confidence 3 224678889998887 788999999999998753
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.46 Score=41.24 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL 272 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 272 (331)
-....-|.+|.+ .+++++|.....+ .+..++...--.++.. ....+-|..-+++..+.++......|+.
T Consensus 109 i~~l~aa~i~~~----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~~r~d~A~~~lk~mq~ided~tLtQLA~ 177 (299)
T KOG3081|consen 109 IDLLLAAIIYMH----DGDFDEALKALHL---GENLEAAALNVQILLK----MHRFDLAEKELKKMQQIDEDATLTQLAQ 177 (299)
T ss_pred HHHHHhhHHhhc----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 344455567766 6889999988887 2333333222233333 3377888888888877776666666766
Q ss_pred HHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 273 GLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 273 ~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+.+ .+.+..|+-+|+.-.+.-++......+....++..++.++|..++++.+...+.
T Consensus 178 awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 6654 447999999999999987788888899999999999999999999998876553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0056 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+++.+|.+|...|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566677777777777777777777766544
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.039 Score=44.91 Aligned_cols=51 Identities=10% Similarity=-0.062 Sum_probs=27.9
Q ss_pred HCCCHHHHHHHHHHHhcCCCCCC-------CHHHHHHHHHHHHH--CCCHHHHHHHHHHHh
Q 020091 188 IAGHVRAQYQLALCLHRGRGVDF-------NLQEAARWYLRAAE--GGYVRAMYNTSLCYS 239 (331)
Q Consensus 188 ~~~~~~a~~~lg~~y~~G~g~~~-------d~~~A~~~~~~A~~--~~~~~a~~~lg~~y~ 239 (331)
++.++++++++|..+.+-- ..+ -+++|+.=|+.|+. .+...++++||..|.
T Consensus 21 nP~DadnL~~WG~ALLELA-qfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELA-QFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHH-hccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3468899999998876400 012 23344444444433 356677777777774
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=43.39 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=59.1
Q ss_pred chHHHhHHHHHHHHHHhC--CC---CCHHHHHHHHHHHhcCCCCCCCHHH-------HHHHHHHHHhCC--------CHH
Q 020091 79 PQLRAASLVCKSWNDALR--PL---REAMVLLRWGKRFKHGRGVRKNLDK-------ALDSFLKGAARG--------STL 138 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~--~~---~~~~a~~~LG~~y~~g~g~~~~~~~-------A~~~~~~A~~~~--------~~~ 138 (331)
-.+++|...|.-.+--+. .. .-+..+..++-+|.. .+|.+. |.++|++|.... ...
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 355666655544333221 11 135677888888888 777554 555555555432 346
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.++.+|.+..+.|++++|+.||.+.+.....
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 7889999999999999999999999987654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0094 Score=34.18 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.+++.+|.+|...|++++|+.+|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999987643
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.68 Score=37.63 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=87.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC---C-HHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG---H-VRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~---~-~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
|+-|+..+.-.++-..|..|+++. ..+..++|+.-|....+-| + ..+....|.+..+ .++...|+.+|
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA----~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aF 117 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA----QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAF 117 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH----HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHH
Confidence 344455555555555555555442 2344556666666655543 3 4678888888876 88999999999
Q ss_pred HHHHHC-CCH-----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 220 LRAAEG-GYV-----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG---KAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 220 ~~A~~~-~~~-----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
..+..- ..+ .+-..-++++. ..| .++.-..-.+....-+++ .+...||..-++.|++.+|.+||.+.
T Consensus 118 deia~dt~~P~~~rd~ARlraa~lLv-D~g---sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 118 DEIAADTSIPQIGRDLARLRAAYLLV-DNG---SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhccCCCcchhhHHHHHHHHHHHh-ccc---cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 998653 222 23344444443 333 455444444443333443 45678999999999999999999998
Q ss_pred HHc
Q 020091 291 TRA 293 (331)
Q Consensus 291 ~~~ 293 (331)
++-
T Consensus 194 a~D 196 (221)
T COG4649 194 AND 196 (221)
T ss_pred Hcc
Confidence 763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.011 Score=33.52 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
+|++++|.++...|+.++|+..|++.++..|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4678888888888888888888888877654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.7 Score=41.21 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=121.4
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---------------------
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--------------------- 135 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--------------------- 135 (331)
+..+.+.-+...++.++..++ -+.|+..|+.-. .....+|.++|++|++.|
T Consensus 180 RERnp~aRIkaA~eALei~pd--CAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPD--CADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhh--hhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 445555555555777776554 567776665433 456789999999987541
Q ss_pred ------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC
Q 020091 136 ------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 136 ------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~ 209 (331)
...+...||+|.++.|+.++|++.|+......+.. ++-...++|-.++.. .
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-------------------~~l~IrenLie~LLe----l 308 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-------------------DNLNIRENLIEALLE----L 308 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-------------------chhhHHHHHHHHHHh----c
Confidence 02344689999999999999999999888665431 355677888888876 7
Q ss_pred CCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCC------------CccccHHHHHHHHHHHHHcCCHHHHHHHHH--
Q 020091 210 FNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGE------------GLPLSHRQARKWMKRAADCGHGKAQLEHGL-- 272 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~------------g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~-- 272 (331)
+.+.++...+.+--+. ..+.-+|.-+.+-.... |.......|.+.+++|.+.+.-...|-|+.
T Consensus 309 q~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 309 QAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred CCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 7788888888776432 23344444444332221 222334567888899988754333333221
Q ss_pred ------HHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 020091 273 ------GLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQ 307 (331)
Q Consensus 273 ------~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~ 307 (331)
-+.+.|| .||+.|---.+.. .-+.|..++.-..+
T Consensus 389 LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~twe 430 (539)
T PF04184_consen 389 LILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTWE 430 (539)
T ss_pred CCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence 1233444 7777766555543 34555555554444
|
The molecular function of this protein is uncertain. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=49.82 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=87.5
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC------
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM------ 150 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~------ 150 (331)
+.-.+++| .++.+ +..|+..+..|+..... +-+++.|.+.|-+..+-.-....-.|+.++.+.
T Consensus 675 e~vgledA----~qfiE---dnPHprLWrllAe~Al~----Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 675 EAVGLEDA----IQFIE---DNPHPRLWRLLAEYALF----KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHhchHHH----HHHHh---cCCchHHHHHHHHHHHH----HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH
Confidence 33344555 44444 46789999999998888 788999999998887765555555666666443
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCC---CccCHHHHHHHHHHH----HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 151 ----DKKEAAISLYRQAAVLGDPAA---QPANAEEAVKLLYQA----SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 151 ----~~~~~A~~~~~~a~~~~~~~~---~~~~~~~A~~~~~~a----~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
|++++|.+.|..+-..+-... ..+|+-..+.+++.. -+.+...|..++|..+.+ ...+.+|.+||
T Consensus 744 ~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~----~~~We~A~~yY 819 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE----MMEWEEAAKYY 819 (1189)
T ss_pred hhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 899999999976533211100 233444444444431 122446788999998876 66799999999
Q ss_pred HHHHH
Q 020091 220 LRAAE 224 (331)
Q Consensus 220 ~~A~~ 224 (331)
.+.-.
T Consensus 820 ~~~~~ 824 (1189)
T KOG2041|consen 820 SYCGD 824 (1189)
T ss_pred Hhccc
Confidence 87643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.2 Score=43.08 Aligned_cols=100 Identities=17% Similarity=0.041 Sum_probs=79.3
Q ss_pred ChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHH
Q 020091 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMV 141 (331)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~ 141 (331)
++...+..+...+..+++..|...+.+.+++.|+...+.++ -|....+ .+..++|..+++.-... .+-..+-
T Consensus 8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tLq 81 (932)
T KOG2053|consen 8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFR----LGKGDEALKLLEALYGLKGTDDLTLQ 81 (932)
T ss_pred cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHH----hcCchhHHHHHhhhccCCCCchHHHH
Confidence 35566778888899999999999999999998765444444 4566666 78889999777654433 3667778
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+-.+|...+..++|..+|++++...|.
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 8999999999999999999999988664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.99 Score=39.24 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
.++.+..++.-.+++.-.+..|.+.++.+++ ..+.-...||.+-.+ .||.+.|..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e--------------------~~p~L~s~Lgr~~MQ----~GD~k~a~~y 234 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE--------------------QEPQLLSGLGRISMQ----IGDIKTAEKY 234 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc--------------------ccHHHHHHHHHHHHh----cccHHHHHHH
Confidence 3445555555556666666666666665443 356777789998887 7899999999
Q ss_pred HHHHHH--------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHH
Q 020091 219 YLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 219 ~~~A~~--------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
|++.-+ ++......+.+.+|. | .+|+..|...|.+....++ +.+-++-+.|+...|+...|++..+
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~l-g---~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHL-G---QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhhee-c---ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 996532 133444556666663 2 5699999999999988855 5566788999999999999999999
Q ss_pred HHHHcCCHH-----HHHHHHHHHh
Q 020091 289 LATRAGETA-----ADHVKNVILQ 307 (331)
Q Consensus 289 ~A~~~~~~~-----a~~~l~~~~~ 307 (331)
.+.+..+.. -.+|+-.+++
T Consensus 311 ~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 311 AMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred HHhccCCccchhhhHHHHHHHHHH
Confidence 999886533 3444555553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.6 Score=38.64 Aligned_cols=154 Identities=11% Similarity=0.002 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHhC---CCHH-------HHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR---GSTL-------AMVDAGLMYWEMD-KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~---~~~~-------a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
.+|.+.|..+|.|+-.. .+|. .+|+.|.-....+ ++++|+.|+++|.+.- .+.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l----------------~~~ 69 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL----------------EKP 69 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH----------------Hhh
Confidence 57888888888887653 2443 4556666666667 7777777777776541 110
Q ss_pred H--HCC-------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCccccHHHHHHHHH
Q 020091 187 S--IAG-------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE-GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 256 (331)
Q Consensus 187 ~--~~~-------~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~-~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 256 (331)
. +.. ....+..|+.+|.. .+.....++|....+.+-. .++....+.|..-...+ ..+.+.+.+.+.
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~ 145 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILM 145 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHH
Confidence 0 011 12345566666654 2234456666666666633 25555555555555443 336666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 020091 257 RAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVK 302 (331)
Q Consensus 257 ~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l 302 (331)
+.+..-+ ....+++.++..+....+..+..+..-+
T Consensus 146 ~mi~~~~-----------~~e~~~~~~l~~i~~l~~~~~~~a~~~l 180 (278)
T PF08631_consen 146 RMIRSVD-----------HSESNFDSILHHIKQLAEKSPELAAFCL 180 (278)
T ss_pred HHHHhcc-----------cccchHHHHHHHHHHHHhhCcHHHHHHH
Confidence 6655421 1123344444555555555444444433
|
It is also involved in sporulation []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.041 Score=46.75 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+.+..|+..|.+|+..+ .+.-+.+-+.||.+.++++....-.++|+++.+ +.+.+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~---------------------N~vk~h 81 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP---------------------NLVKAH 81 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh---------------------HHHHHH
Confidence 788999999999999887 334456888999998888888888888888765 578899
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
|.||.+... ...+++|+..+.+|..
T Consensus 82 ~flg~~~l~----s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 82 YFLGQWLLQ----SKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHh----hccccHHHHHHHHHHH
Confidence 999998876 6779999999999954
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.35 Score=41.95 Aligned_cols=132 Identities=13% Similarity=0.042 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-------
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------- 261 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------- 261 (331)
...+|.+..++.- .+.|.-....+.+.++.+ ++.-...||.+-.+ .+|.+.|..+|++.-..
T Consensus 177 ~~Vmy~~~~~llG----~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLG----MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHhc----chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhcc
Confidence 3456666666653 677889999999998864 45667788888755 34999999999955322
Q ss_pred -CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 262 -GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+......+.+.+|.-..|+.+|...|.+.++.++.++.++-...+..+=.++...|....+..+...|.|
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2334556778888889999999999999999999888888888888888999999999999998888865
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.6 Score=37.80 Aligned_cols=152 Identities=12% Similarity=0.041 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C
Q 020091 62 ASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G 135 (331)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~ 135 (331)
+..+..+..++...++.|++.+|...+......-+-.. -..++..|+..+.. .++++.|+.+..+=+.. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCC
Confidence 34466778899999999999999887777766655332 35789999999999 89999999999998876 2
Q ss_pred CHHHHHHHHHHHhcC-----CCH---HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 136 STLAMVDAGLMYWEM-----DKK---EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~-----~~~---~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
-..+++..|..+... .|. .+|+.-|...+..-|...-..|-+.-+..+...+ +.--..+|..|..
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L----A~~Em~IaryY~k--- 179 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL----AGHEMAIARYYLK--- 179 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHH---
Confidence 445788888888775 333 3455555555555443222222222222221111 1111245556654
Q ss_pred CCCCHHHHHHHHHHHHHC
Q 020091 208 VDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~ 225 (331)
.+.+.-|+..++..++.
T Consensus 180 -r~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 180 -RGAYVAAINRFEEVLEN 196 (254)
T ss_pred -hcChHHHHHHHHHHHhc
Confidence 45566666666666653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.025 Score=31.97 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
++++++|.++...|++++|+..|++.++.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888887643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.35 Score=42.95 Aligned_cols=115 Identities=15% Similarity=0.050 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 212 LQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 212 ~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
.+.|...|.+|.+.+. ...+...+.+-.+- .+|...|...|++++.. .+.+.+......+...++.+.|...|
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~---~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC---NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT---CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 6667777777765432 34455555552221 22566677777777665 34455555555566667777777777
Q ss_pred HHHHHc-CCHH-H-HHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 288 ELATRA-GETA-A-DHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 288 ~~A~~~-~~~~-a-~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
++++.. .... + ..+-..+.-...-|+++.+..+.++..+..|
T Consensus 94 er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 94 ERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 777654 2222 1 1122222233334455555555555544433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.51 Score=39.28 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 107 LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
=|.-++. .++|++|..-|..|++.= ....+.|-|.++.+.+..+.|+.-+.+|+++++.
T Consensus 101 EGN~~F~----ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---------- 166 (271)
T KOG4234|consen 101 EGNELFK----NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---------- 166 (271)
T ss_pred HHHHhhh----cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch----------
Confidence 3555555 789999999999988762 2334557777777778888888888888888763
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
+-.|...-+.+|.. ...+++|++-|++..+.+.
T Consensus 167 -----------y~kAl~RRAeayek----~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 167 -----------YEKALERRAEAYEK----MEKYEEALEDYKKILESDP 199 (271)
T ss_pred -----------hHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHhCc
Confidence 45555667777776 5668888888888877644
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.5 Score=38.86 Aligned_cols=237 Identities=16% Similarity=0.061 Sum_probs=143.7
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHH--hcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRF--KHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y--~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
+-.+...+-.|+++.|. +-++...+.....-+-.-|.+. .. .|+.+.|++|-+.|+..- .+-+...+=
T Consensus 124 lLeAQaal~eG~~~~Ar----~kfeAMl~dPEtRllGLRgLyleAqr----~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 124 LLEAQAALLEGDYEDAR----KKFEAMLDDPETRLLGLRGLYLEAQR----LGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred HHHHHHHHhcCchHHHH----HHHHHHhcChHHHHHhHHHHHHHHHh----cccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 44444556778888884 4444443322222111112222 23 688999999999988775 333333222
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc---CCCCC---------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 145 LMYWEMDKKEAAISLYRQAAVL---GDPAA---------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 204 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~---------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 204 (331)
......||-+.|+++....... ....+ ...|...|...-.++.++ +...+...-+..+..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 3334568888888888765432 11111 455666666666666654 566676677777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHH-----HcCCHHHHHHHHHHHhccC
Q 020091 205 GRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA-----DCGHGKAQLEHGLGLFTEG 278 (331)
Q Consensus 205 G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~-----~~~~~~a~~~Lg~~~~~~~ 278 (331)
.++..++-..++.+-+.. ++. ++.+|.... .-+.++.-++++. ..++.++.+.++..-..-|
T Consensus 276 ----d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar----~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 276 ----DGNLRKGSKILETAWKAEPHPD----IALLYVRAR----SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred ----ccchhhhhhHHHHHHhcCCChH----HHHHHHHhc----CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 677888888888887653 232 333343321 2233444444443 2367888888888889999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 279 EMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
++..|..--+.+++..+-...+.|-.=.+.-+.+|.-++..++-+-.
T Consensus 344 e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 344 EFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred chHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 99999999999998887666665444444455566666666655543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.8 Score=39.99 Aligned_cols=171 Identities=11% Similarity=0.051 Sum_probs=87.9
Q ss_pred CchHHHhHHHHHHHHHHhCCC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCC
Q 020091 78 LPQLRAASLVCKSWNDALRPL---REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~---~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~ 151 (331)
-.+++..+.+. +-++..+.. ..+...+.+|..+-+. .-.||.++|...+..++.. .+++.+..+|.+|...
T Consensus 154 iqdydamI~Lv-e~l~~~p~~~~~~~~~i~~~yafALnRr-n~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~- 230 (374)
T PF13281_consen 154 IQDYDAMIKLV-ETLEALPTCDVANQHNIKFQYAFALNRR-NKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL- 230 (374)
T ss_pred hhhHHHHHHHH-HHhhccCccchhcchHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-
Confidence 35555554443 333333221 1444556666666553 2278999999999996543 3899999999999653
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHh-cCCCCCCCHHHHHHHH----HHHHHC
Q 020091 152 KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLH-RGRGVDFNLQEAARWY----LRAAEG 225 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~-~G~g~~~d~~~A~~~~----~~A~~~ 225 (331)
|..+ +. ......++|+.||.++-+.. +...=.|++.++. .|.. ..+-.+..+.- ....+.
T Consensus 231 --------~~~s---~~--~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~-~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 231 --------FLES---NF--TDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD-FETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred --------HHHc---Cc--cchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHHHhh
Confidence 1110 00 01222566666666665442 2233335555443 3321 11122222222 111122
Q ss_pred C---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHH
Q 020091 226 G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 267 (331)
Q Consensus 226 ~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 267 (331)
| ...-++..|..+.-.. ..+|+++|..+++++.... +.+|
T Consensus 297 g~~~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred ccccccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcC-Ccch
Confidence 2 2223333333332211 2459999999999998874 4444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.045 Score=32.71 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
..++.+||.+|...|++++|+.++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888888888888888888888754
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.058 Score=32.21 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.++.+||.+|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999999864
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.9 Score=41.37 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
.+..+..++.+... .|.++.|...+.++...+ .+...+.-+.+++..|+..+|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777777 788888888888888765 777888888888888888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.048 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+++.+|.++...+++++|+.+|++++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3566777777777777777777777776543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.11 Score=44.13 Aligned_cols=91 Identities=18% Similarity=0.082 Sum_probs=65.5
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.-+.|+.....+.|..|+..|.+|+..+ .+.=+.|-+.+|.. .++++....-.++|++. +...+.+.||.+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 3334444445555555666666555432 33445588889887 78899999999999887 4578899999998
Q ss_pred hcCCCccccHHHHHHHHHHHHHc
Q 020091 239 SFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 239 ~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
.. .+.+++|+..+.+|...
T Consensus 89 l~----s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQ----SKGYDEAIKVLQRAYSL 107 (284)
T ss_pred Hh----hccccHHHHHHHHHHHH
Confidence 77 56899999999999654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.066 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
.+++.+|.++...+++++|+.+|+++++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467788999999999999999998887654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.19 Score=47.13 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-------CC-------------CHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAE-------GG-------------YVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~-------~~-------------~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.++|||-++.. .+.+.-+..+|.+|+. .| .....||.|..|.. .+..-.|++
T Consensus 285 f~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh----~grPl~Afq 356 (696)
T KOG2471|consen 285 FNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH----SGRPLLAFQ 356 (696)
T ss_pred eecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh----cCCcHHHHH
Confidence 35678887776 6778888888888874 12 34557788888876 447888888
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
+|.+++.. .++.-|..|+.|.+.
T Consensus 357 Cf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 357 CFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888776 667788888776643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.14 E-value=3.4 Score=41.15 Aligned_cols=49 Identities=20% Similarity=0.104 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 247 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.++-|+..-+.++...-+..+..|+..+.++|++++|-+.|-.|+..+.
T Consensus 978 afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 978 AFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred chhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 5566777777777666678888999999999999999999999988653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.13 Score=46.16 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=62.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLL 183 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~ 183 (331)
.-|.-|+. .|.|++|+.+|.+++... ++-.+.|-+..|++.+.+..|..-+..|+.++..
T Consensus 102 E~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-------------- 163 (536)
T KOG4648|consen 102 ERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-------------- 163 (536)
T ss_pred Hhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--------------
Confidence 34777877 789999999999988875 6777788888888888888888777777766431
Q ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 184 YQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 184 ~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+..|+..-|..-.. .++..+|.+-++.+++.
T Consensus 164 -------Y~KAYSRR~~AR~~----Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 -------YVKAYSRRMQARES----LGNNMEAKKDCETVLAL 194 (536)
T ss_pred -------HHHHHHHHHHHHHH----HhhHHHHHHhHHHHHhh
Confidence 34444444444433 34455666666665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=93.84 E-value=2.1 Score=38.05 Aligned_cols=96 Identities=11% Similarity=-0.091 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHH--
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK-- 265 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~-- 265 (331)
....+...|.+-.. +.+|.+.|...|+++++. .+...+......+.. ..|.+.|...|++++.. ....
T Consensus 34 ~~~vy~~~A~~E~~---~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~ 106 (280)
T PF05843_consen 34 TYHVYVAYALMEYY---CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINNARALFERAISSLPKEKQS 106 (280)
T ss_dssp -THHHHHHHHHHHH---TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHC
T ss_pred CHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHH
Confidence 34556666666322 145666677777777764 334433333333332 23777777778777655 2222
Q ss_pred --HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 266 --AQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 266 --a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.+......-...|+.+.....++++.+.
T Consensus 107 ~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 107 KKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334444445567777777777777665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.97 Score=35.55 Aligned_cols=61 Identities=16% Similarity=0.040 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 228 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
..+...++..+.. .+++++|..++++++... +..++..|-.+|...|+..+|+..|++..+
T Consensus 62 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444555555543 337777777777776663 345666677777777777777777776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.5 Score=34.40 Aligned_cols=106 Identities=20% Similarity=0.011 Sum_probs=68.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAAQP-----ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.|......++.+.++..+++++.+-...... .-.......++. -...+...++..+.. .+++++|+.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~----~~~~~~~~l~~~~~~----~~~~~~a~~ 83 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE----LYLDALERLAEALLE----AGDYEEALR 83 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH----TT-HHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHh----ccCHHHHHH
Confidence 3444555678888888888888774433311 122223333322 245667778887766 788999999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 218 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 218 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
++++++.. -+..++..+-.+|.. .++..+|+..|++...
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 99999876 456778888888865 4499999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.6 Score=36.19 Aligned_cols=93 Identities=22% Similarity=0.092 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
...++..+.. .+++++|...++.+...- .+.+-.+|+.+....+.+++|+..+....+.+-
T Consensus 92 aL~lAk~~ve----~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---------- 157 (207)
T COG2976 92 ALELAKAEVE----ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---------- 157 (207)
T ss_pred HHHHHHHHHh----hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----------
Confidence 3344555555 677777777777666432 223445667777666666666666544332210
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
.+...-.-|.++.. .+|.++|+.-|.+|++.+
T Consensus 158 ------------~~~~~elrGDill~----kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 ------------AAIVAELRGDILLA----KGDKQEARAAYEKALESD 189 (207)
T ss_pred ------------HHHHHHHhhhHHHH----cCchHHHHHHHHHHHHcc
Confidence 12223345666654 666777777777776654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.53 E-value=2 Score=37.98 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
.+++..|...|..+... ++.++...|+.+|...|+.+.|...+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 78999999999988765 4788889999999999999988888765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.53 E-value=2.7 Score=41.78 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---------CHHHHH----HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---------STLAMV----DAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~~a~~----~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
..+-.-|.+|.. -.|+++|+++|++.-.-| .|.-.. .-|.-+...|.++.|+..|-.|-.+-.
T Consensus 662 elydkagdlfek----i~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 662 ELYDKAGDLFEK----IHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred HHHHhhhhHHHH----hhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 334455677777 789999999998753322 222221 345556667889999988876632210
Q ss_pred CC---CCccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 169 PA---AQPANAEEAVKLLYQASIAGHVRAQY-QLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 169 ~~---~~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.. -..+...+|+......-+......+| .++..|.+ .+|++.|.++|.++--
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADL 793 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcch
Confidence 00 03455566666665555544444444 56677776 7899999999988743
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.6 Score=33.60 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=75.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHH-----HHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STL-----AMV 141 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~-----a~~ 141 (331)
.+..+..+-..+..++|+..+..+.+.....-...+....|-+..+ +++...|+.+|..+.... .|. +..
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444444455566677766666555544433345567777777777 778888888887766543 332 334
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
.-++++...|.+++-..-.+-...-+++. -..+.--||..-.. .+|+.+|..||.+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~m--------------------R~sArEALglAa~k----agd~a~A~~~F~q 192 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPM--------------------RHSAREALGLAAYK----AGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChh--------------------HHHHHHHHhHHHHh----ccchHHHHHHHHH
Confidence 44555555555554444333322222211 13445567776554 6789999999998
Q ss_pred HHHC
Q 020091 222 AAEG 225 (331)
Q Consensus 222 A~~~ 225 (331)
.++.
T Consensus 193 ia~D 196 (221)
T COG4649 193 IAND 196 (221)
T ss_pred HHcc
Confidence 8763
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.47 Score=39.25 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=71.7
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~ 146 (331)
+..+....+.+++++|...+...+....|.. .+.+-.+|+.+... .+.+++|...+..-.+.+ .+...-.-|.+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~elrGDi 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence 5555567788999999766654444433321 34566789999988 899999999887766655 44455678999
Q ss_pred HhcCCCHHHHHHHHHHHHHcC
Q 020091 147 YWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+...|+.++|+..|.+++..+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 999999999999999999885
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.9 Score=35.10 Aligned_cols=211 Identities=16% Similarity=0.103 Sum_probs=105.8
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhC----C-----CH-
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAAR----G-----ST- 137 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~----~-----~~- 137 (331)
..+|+++.|...+.+...... ..+ +..+|+.|.-... .+ +++.|..|+++|.+. + ++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 356777777655554444331 122 3467777877777 77 999999999999765 2 11
Q ss_pred ------HHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC-CCHHHHH
Q 020091 138 ------LAMVDAGLMYWEMDKK---EAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA-GHVRAQY 196 (331)
Q Consensus 138 ------~a~~~lg~~~~~~~~~---~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~-~~~~a~~ 196 (331)
..+..|+.+|...+.. ++|..+.+.+-...+... ...+.+.+...+.+.+.. +.+++-+
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 2456788888777654 344444444432222211 334566666666665543 2233333
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-C-HHHHHHHHHHHhcCC-C-cccc--HHHHHHHHHHHHHc-C---
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAEG----G-Y-VRAMYNTSLCYSFGE-G-LPLS--HRQARKWMKRAADC-G--- 262 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~-~-~~a~~~lg~~y~~g~-g-~~~~--~~~A~~~~~~a~~~-~--- 262 (331)
....-...- -...+...+...+.+.+-. + + ...-.-+-.++..+. + .... .+.....+.+.... +
T Consensus 159 ~~~l~~i~~-l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l 237 (278)
T PF08631_consen 159 DSILHHIKQ-LAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL 237 (278)
T ss_pred HHHHHHHHH-HHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 222111100 0023344555555444321 1 1 111111111221111 1 1111 33333444433222 1
Q ss_pred CHHH-------HHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 263 HGKA-------QLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 263 ~~~a-------~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
...+ ..+-|...++.++|++|..||+-+..
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 1222 24567788999999999999998763
|
It is also involved in sporulation []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.6 Score=35.25 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 247 SHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
..+.|+.-..+|++.+. ..|...-+..|.++..+++|+.-|++..+.++..
T Consensus 149 k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 149 KWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 55666666667766643 4566666777777888888888888888877644
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.77 Score=38.27 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=47.7
Q ss_pred HhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---C---CHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 94 ALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G---STLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 94 ~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~---~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
..+...+++.++.||.+|.. .|.++|+.+|.++.+. + +++....|+.+|...+++++|--|
T Consensus 134 ~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 134 GTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 33445688888888888876 7888898888888865 2 678888888888888888887554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.62 Score=29.92 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhch
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSA 311 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~ 311 (331)
+..+.||..++..|++++|..+.+.+++. ++.++..+...+...+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 45678899999999999999999999886 466777766666655543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.9 Score=33.54 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADH 300 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 300 (331)
....+++++|++..-. -..|..+.+..++......+ .+-.+.|+..++..++|++++.|....++. ++.++..
T Consensus 31 s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3567889999985433 36688899999999886333 355678999999999999999999999876 5677777
Q ss_pred HHHHHHhhhchh
Q 020091 301 VKNVILQQLSAT 312 (331)
Q Consensus 301 ~l~~~~~~l~~~ 312 (331)
+-..+...++++
T Consensus 110 Lk~~ied~itke 121 (149)
T KOG3364|consen 110 LKETIEDKITKE 121 (149)
T ss_pred HHHHHHHHHhhc
Confidence 766776666554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.45 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.+.|+..|...||.+.|...++..+..|+..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 4678999999999999999999999877754
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.44 Score=42.83 Aligned_cols=94 Identities=18% Similarity=-0.038 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHH
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEH 270 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~L 270 (331)
.-.-|+-|.. ++.|++|+.+|.+++... ++....+-+..|+. .+.+..|..-...|+..+ +..++-.-
T Consensus 100 iKE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 3466777776 899999999999998874 46667788888887 567888888888887764 56788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 271 GLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 271 g~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
|......|+..+|.+-++.+++.-+.
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 88889999999999999999988655
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.5 Score=36.56 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---C---CHHHHHHHHHHHhccCCHH
Q 020091 211 NLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---G---HGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 211 d~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~~~~~~~~~ 281 (331)
+-+.|.+-|.++-.. .++.-++.||..|. ..|.++++..|.++.+. + +++....|+.+++.+++++
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 356777777776543 67888888888885 45888999999988876 2 4677888999999999999
Q ss_pred HHHHHH
Q 020091 282 KAVVYL 287 (331)
Q Consensus 282 ~A~~~~ 287 (331)
+|+-|-
T Consensus 196 ~AYiwa 201 (203)
T PF11207_consen 196 QAYIWA 201 (203)
T ss_pred hhhhhe
Confidence 998763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.6 Score=38.41 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+-..|+++... .|..++|++.|+...+. ++.....+|-.++...+.+.++..++.+--+.
T Consensus 261 ~KrRLAmCark----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 261 AKRRLAMCARK----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hHHHHHHHHHH----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 45678888888 89999999999998864 35567889999999999999999988886443
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.63 E-value=9.3 Score=33.90 Aligned_cols=174 Identities=14% Similarity=0.027 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHH
Q 020091 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLA 199 (331)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 199 (331)
..++-.+|+.+-+.... +.-+.-+.-....+++.+|...|..+....+ ++.++..-|+
T Consensus 118 Pesqlr~~ld~~~~~~~-e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~---------------------~~~~~~~~la 175 (304)
T COG3118 118 PESQLRQFLDKVLPAEE-EEALAEAKELIEAEDFGEAAPLLKQALQAAP---------------------ENSEAKLLLA 175 (304)
T ss_pred cHHHHHHHHHHhcChHH-HHHHHHhhhhhhccchhhHHHHHHHHHHhCc---------------------ccchHHHHHH
Confidence 34455666666554422 2222333344455677777777776666544 5688888999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH-HH--HHHhcCCCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Q 020091 200 LCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYN-TS--LCYSFGEGLPLSHRQARKWMKRAA-DCGHGKAQLEHGLGLF 275 (331)
Q Consensus 200 ~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~-lg--~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~~~ 275 (331)
.+|.. .++.+.|...+...-.......... .+ ..+.+ ..+..+....-+++. +-++.++.+.|+..+.
T Consensus 176 ~~~l~----~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q----aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~ 247 (304)
T COG3118 176 ECLLA----AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ----AAATPEIQDLQRRLAADPDDVEAALALADQLH 247 (304)
T ss_pred HHHHH----cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH----HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99987 7888888888877533222222221 11 11111 112222222333333 3368899999999999
Q ss_pred ccCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 276 TEGEMMKAVVYLELATRA----GETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~~----~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
..|+.+.|+..+--.+.. .+..+...+-.++..+...|. .+....+++
T Consensus 248 ~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp-~~~~~RRkL 299 (304)
T COG3118 248 LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP-LVLAYRRKL 299 (304)
T ss_pred HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Confidence 999999999998877765 245667777777777777775 454444443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.44 E-value=3.5 Score=35.57 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------CCH----------HHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GST----------LAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~----------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
.++..-|.-++. .+++.+|...|+.|+.. |.+ .-+.|.+.|+...+++-++++...
T Consensus 179 ~~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 179 PVLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred HHHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345555555555 67888888888877632 222 233455666666666666666665
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
..+...+ ++..|+|.-|..+.. .=+..+|..-|.++++.+.
T Consensus 255 eiL~~~~---------------------~nvKA~frRakAhaa----~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 255 EILRHHP---------------------GNVKAYFRRAKAHAA----VWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHhcCC---------------------chHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCh
Confidence 5555544 466666666666654 2345666666666665443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.27 Score=26.32 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
+.+.||..+...|+.++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665553
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.38 Score=25.72 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHH
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLE 288 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~ 288 (331)
.+.+.||..+...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788888888999999888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.44 E-value=2.2 Score=33.18 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=41.8
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA 143 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l 143 (331)
.++.-++...++..+.+ .+..+|..+..+|..|.. .++..+|-+.+++|++.|..+|+.++
T Consensus 98 ~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~k----lg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKK----LGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp HTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHH----hcchhhHHHHHHHHHHhchHHHHHHh
Confidence 45566666555555554 234578899999999988 89999999999999999999988765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.48 Score=30.42 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|.|+..+.+.|++++|..+...+++..|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45788888899999999999999999888664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.91 E-value=4 Score=33.53 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---- 261 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---- 261 (331)
-..++..+|..|.. .||.++|+++|.++.+.. ..+.+.++-.+... .+|+.....+..++-..
T Consensus 35 ir~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 35 IRMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcc
Confidence 35678899999987 789999999999987642 13344444444433 34888888888887543
Q ss_pred CCHHHHH----HHHHHHhccCCHHHHHHHHHHHH
Q 020091 262 GHGKAQL----EHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 262 ~~~~a~~----~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
++++... .-|..+...++|.+|...|-.+.
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 4454443 23555666899999998887764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=89.73 E-value=3.7 Score=31.26 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHhC-------------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-------------G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLL 183 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~ 183 (331)
.+-+++|..-+++|.+. | ++.++..|+-.+...|++++++..-. .|+.||
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~----------------~aL~YF 85 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSAD----------------RALRYF 85 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHH----------------HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHH----------------HHHHHH
Confidence 46788888888888654 1 34455677778888888888876543 344555
Q ss_pred HHHHHCCCHHHHH------HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 184 YQASIAGHVRAQY------QLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 184 ~~a~~~~~~~a~~------~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.+-=++...+... +-+..+.. .+..++|+..|+.+.+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Confidence 5544443333333 33333332 5667777777777754
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.34 E-value=1.1 Score=39.76 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=42.2
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (331)
+..+......|+.+.|..++...+..+++ +++++...|.+... .++.-+|-++|-+|... ++.+|+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~--~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPT--NPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCC--CHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34444555667777776666666666554 56666667766666 56666777777766543 46665544
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.4 Score=39.55 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=69.8
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
.=|.-|+. .++|..|+..|.+++... ++ ..+.|-+-+....|++..|+.=..++...++
T Consensus 86 eeGN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P----------- 150 (390)
T KOG0551|consen 86 EEGNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP----------- 150 (390)
T ss_pred HHhHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc-----------
Confidence 34777777 799999999999998763 32 2355777777777888888888888888776
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.+..+++.=+.|+.. .+.+.+|..|.....+.
T Consensus 151 ----------~h~Ka~~R~Akc~~e----Le~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 151 ----------THLKAYIRGAKCLLE----LERFAEAVNWCEEGLQI 182 (390)
T ss_pred ----------chhhhhhhhhHHHHH----HHHHHHHHHHHhhhhhh
Confidence 478888888888876 66788888888877543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.5 Score=31.84 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhC----C-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 118 RKNLDKALDSFLKGAAR----G-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.+|+..|++.+.+..+. + ...+..++|.++...|++++|+..+++|+.+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46777776665555432 1 2356677888888888888888888877765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.62 E-value=19 Score=32.76 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A 222 (331)
+.-|...++.+++. .++..++.++..+.
T Consensus 208 D~Wa~Ha~aHVlem----~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 208 DCWASHAKAHVLEM----NGRHKEGKEFMYKT 235 (491)
T ss_pred chHHHHHHHHHHHh----cchhhhHHHHHHhc
Confidence 34444444444443 34455555555444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.58 E-value=15 Score=31.78 Aligned_cols=86 Identities=15% Similarity=0.015 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHH----------CC----------CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHH
Q 020091 209 DFNLQEAARWYLRAAE----------GG----------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 266 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~----------~~----------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 266 (331)
.+++.+|...|+.|+. .| ....+.|.+.|+.. ..++-++++.....+.. ++..|
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~----~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK----KEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh----HHHHHHHHHHHHHHHhcCCchHHH
Confidence 6778888888887753 12 34456778888865 55888888888887766 78899
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
+|.-|..+..--+.++|..-|.++++.++.-+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 99999999989999999999999999987644
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.7 Score=38.57 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 171 (331)
|+..-|.++.. |+.++|...|+-|..+. +++++..+|.+....++.-+|-.+|-+|+...+...
T Consensus 119 Al~~A~~~~~~-----Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 119 ALKAAGRSRKD-----GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHhc-----cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 34445666666 78999999999998874 999999999999989999999999999998877554
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.3 Score=25.82 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHH--HHHHHHcC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVY--LELATRAG 294 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~--~~~A~~~~ 294 (331)
+..+.+|..++.+|++++|+.+ |+-++..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999 54776554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=87.95 E-value=4.3 Score=29.35 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=45.2
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~ 134 (331)
..+..+++.+|.+...+++........ ..++.++|.++.. .|++++|+..++.|++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 346678899888887777776654433 4578889999988 89999999999999865
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=87.86 E-value=8.9 Score=29.24 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCC----------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH------
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA------ 132 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~------ 132 (331)
+..+-..+..|-+.+|..-|+..+....... ++..+..|.-.+-. .++|++++.--.+|+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhc
Confidence 3344445667888888888888887764432 22334444455544 678777655544444
Q ss_pred -hCCCHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 133 -ARGSTL------AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 133 -~~~~~~------a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
++..-+ +.++-|..+...|+.++|+..|+++.++
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444333 4455666666679999999999999875
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.75 E-value=26 Score=33.43 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G 262 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 262 (331)
....||.++.. -.+|.+-|...+++|... + ..++...|+.+|.+- .+....|...+++|++. +
T Consensus 48 t~LqLg~lL~~---yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq~ 121 (629)
T KOG2300|consen 48 THLQLGALLLR---YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL---AQSFPPAKALLRKAIELSQS 121 (629)
T ss_pred HHHHHHHHHHH---HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcC
Confidence 34567765543 267888888888888542 1 245667788888662 23788888899999876 3
Q ss_pred CH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 263 HG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 263 ~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~------~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+ .-.+.|+.++.-.+|+..|++.+...++.-+ ....+.+....-.+.+-+..++..++..
T Consensus 122 ~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~ 192 (629)
T KOG2300|consen 122 VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQR 192 (629)
T ss_pred CchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33 3346788988889999999998766655433 3345555555544444455565555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.13 E-value=21 Score=32.30 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
....+..++.+..+.|.++.|...+.++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 44566777778888888888888888887755
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=86.72 E-value=21 Score=31.33 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=45.3
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHH---------------Hc--CCHHHHHHHHHHHhhh
Q 020091 249 RQARKWMKRA--ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELAT---------------RA--GETAADHVKNVILQQL 309 (331)
Q Consensus 249 ~~A~~~~~~a--~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~---------------~~--~~~~a~~~l~~~~~~l 309 (331)
..|+.|- +. -..|+++-+..+|..|++.+++.+|..+|-..- .. ..+...+....++..+
T Consensus 74 ~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 74 KAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp HHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHH
T ss_pred HHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 4555555 21 123677777777777777777777777662211 11 2344566666777777
Q ss_pred chhcHHHHHHHHHhhhcC
Q 020091 310 SATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~ 327 (331)
.-++++-|...+..+.+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 778888888777666543
|
; PDB: 3LKU_E 2WPV_G. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=86.28 E-value=2.5 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH--HHHHHHc
Q 020091 138 LAMVDAGLMYWEMDKKEAAISL--YRQAAVL 166 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~--~~~a~~~ 166 (331)
+.++.+|..+...|++++|+++ |+-++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666 3354444
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=85.70 E-value=3 Score=36.62 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=32.6
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
|..||.+|+.. +....++.||.++.. .+|.-.|+.||-++.-. ..+.|..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55666666543 556666666666654 23666666666666533 445566666665544
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.61 E-value=3.1 Score=40.28 Aligned_cols=84 Identities=17% Similarity=-0.009 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCHHH
Q 020091 208 VDFNLQEAARWYLRAAEGGY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~ 282 (331)
..+|...|+.++.+|..... .....+|+.+..+- | -...|-.++.++....+ +...+-+|..+....|.++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~-~---~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHY-G---LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHh-h---hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 47888888888888865432 23456777776541 1 45567777777776643 5566778888888888889
Q ss_pred HHHHHHHHHHcCC
Q 020091 283 AVVYLELATRAGE 295 (331)
Q Consensus 283 A~~~~~~A~~~~~ 295 (331)
|++.|+.|++..+
T Consensus 695 a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 695 ALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988888753
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=85.05 E-value=3.1 Score=28.85 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHc
Q 020091 272 LGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.-+...|++++|+.+|+.|++.
T Consensus 14 Ve~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 14 VKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 3366788899999988888873
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.92 E-value=0.9 Score=40.86 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|++.|..|+.++ .+..+..-+.++...+....|+.=|..|++++++. +..+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---------------------a~~y 185 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---------------------AKGY 185 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---------------------cccc
Confidence 566777777777777775 33444566667777777777777777777776532 2223
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
-.-|..... .+++.+|.++|..|++.++
T Consensus 186 kfrg~A~rl----lg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 186 KFRGYAERL----LGNWEEAAHDLALACKLDY 213 (377)
T ss_pred chhhHHHHH----hhchHHHHHHHHHHHhccc
Confidence 333333332 4566666666666666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.59 E-value=57 Score=34.33 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASI 188 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~ 188 (331)
-++.+.|.++-+ ..+.+..|..||.....++...+|++-|-+|- ++.. ..+.+++-+.++.-|-+
T Consensus 1088 i~~ldRA~efAe---~~n~p~vWsqlakAQL~~~~v~dAieSyikad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAE---RCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD---DPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hhhHHHHHHHHH---hhCChHHHHHHHHHHHhcCchHHHHHHHHhcC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 456666665543 34677888888888888888888888877652 1111 55666666666665532
Q ss_pred C------------------------------CCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 189 A------------------------------GHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLC 237 (331)
Q Consensus 189 ~------------------------------~~~~a~~~lg-~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~ 237 (331)
. +++... ..| .||. .+.|+.|.-+|.-... .+....-.+
T Consensus 1162 k~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~-~vGdrcf~-----~~~y~aAkl~y~~vSN----~a~La~TLV 1231 (1666)
T KOG0985|consen 1162 KVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQ-QVGDRCFE-----EKMYEAAKLLYSNVSN----FAKLASTLV 1231 (1666)
T ss_pred hhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHH-HHhHHHhh-----hhhhHHHHHHHHHhhh----HHHHHHHHH
Confidence 2 111111 122 1222 2345555555543321 111111112
Q ss_pred HhcCCCccccHHHHHHHHHHHHHc----------------------C-----CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 238 YSFGEGLPLSHRQARKWMKRAADC----------------------G-----HGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 238 y~~g~g~~~~~~~A~~~~~~a~~~----------------------~-----~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|. +.++-|...-++|-.. | +.+-.-.|-..|.+.|-|++-+..++-+
T Consensus 1232 ~L------geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1232 YL------GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HH------HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 21 1444444444433211 1 2333445666677788888888888876
Q ss_pred HHc--CCHHHHHHHHHHHhhhchhcHHHHHHHH
Q 020091 291 TRA--GETAADHVKNVILQQLSATSRDRAMLVV 321 (331)
Q Consensus 291 ~~~--~~~~a~~~l~~~~~~l~~~~~~~a~~~~ 321 (331)
+.. ....-..-++.++.+..+...-++.++|
T Consensus 1306 LGLERAHMgmfTELaiLYskykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYKPEKMMEHLKLF 1338 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 533 2222334567777888777777777665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.56 E-value=32 Score=31.36 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHH---HHHHHHHHhccCCH
Q 020091 209 DFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKA---QLEHGLGLFTEGEM 280 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a---~~~Lg~~~~~~~~~ 280 (331)
.+-+++|.+.-++|++.+. .-+...++.++.. ...+.++.++..+..+. +.-.+ +.+.+.++.+.+.+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 4556666666666665543 3333445555432 23566666665554322 11111 23445555555666
Q ss_pred HHHHHHHHHHH
Q 020091 281 MKAVVYLELAT 291 (331)
Q Consensus 281 ~~A~~~~~~A~ 291 (331)
+.|+..|.+-+
T Consensus 264 e~aleIyD~ei 274 (491)
T KOG2610|consen 264 EKALEIYDREI 274 (491)
T ss_pred hHHHHHHHHHH
Confidence 66666665443
|
|
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=84.42 E-value=2 Score=29.81 Aligned_cols=33 Identities=36% Similarity=0.233 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
+.++|+.+..+|++.+ ..+++++|+.+|..|++
T Consensus 2 ~l~kai~Lv~~A~~eD----~~gny~eA~~lY~~ale 34 (75)
T cd02680 2 DLERAHFLVTQAFDED----EKGNAEEAIELYTEAVE 34 (75)
T ss_pred CHHHHHHHHHHHHHhh----HhhhHHHHHHHHHHHHH
Confidence 3456666666665554 35666666666666655
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.74 E-value=0.58 Score=42.05 Aligned_cols=95 Identities=13% Similarity=-0.040 Sum_probs=75.1
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.-.++.+.++.|.+++|+..|...+...+ +.+..+..-+.++.. .+....|+.-+..|+..+ ....+-.-|.
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ein~Dsa~~ykfrg~ 190 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLK----LKKPNAAIRDCDFAIEINPDSAKGYKFRGY 190 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCC--chhhhcccccceeee----ccCCchhhhhhhhhhccCcccccccchhhH
Confidence 44566778999999999888877776644 355556666777776 889999999999999986 4445667788
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.....|+.++|.+.+..++.++.
T Consensus 191 A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 191 AERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HHHHhhchHHHHHHHHHHHhccc
Confidence 88888999999999999998854
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.35 E-value=7.4 Score=34.98 Aligned_cols=95 Identities=15% Similarity=0.002 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----CC----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----GG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 262 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~----~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 262 (331)
..+|+.+.+..|.+ .+|.+.|++++++..+ .| -......+|..|..-.-+.++.++|...+++ .|
T Consensus 103 v~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~---Gg 175 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE---GG 175 (393)
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---CC
Confidence 46789999999987 8899999999988754 23 3455678899886655566777777777664 46
Q ss_pred CHHHHHHH----HHHHhccCCHHHHHHHHHHHHH
Q 020091 263 HGKAQLEH----GLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 263 ~~~a~~~L----g~~~~~~~~~~~A~~~~~~A~~ 292 (331)
+++-.+.| |...+.-+||.+|...|...+.
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 77766543 5555668899999988877764
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=82.54 E-value=8.3 Score=27.74 Aligned_cols=44 Identities=9% Similarity=-0.088 Sum_probs=29.6
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 126 DSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 126 ~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.-+++++.. +++++.+.||..+...|++++|+..+...+..+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 344454443 47788888888888888888888888888876544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.49 E-value=12 Score=30.76 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++..+|..|.. .||.+.|++.|.++-+.. ..+.++++-.+....+|......+..++-.....
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~------ 105 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK------ 105 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc------
Confidence 4688899999999 899999999999987653 2334455555555567888777777776544221
Q ss_pred HHHHHHHHHHHHHCCCHHHH----HHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQ----YQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~----~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.|+.+.. ..-|..+.. .++|.+|.+.|..+..
T Consensus 106 -------------~~d~~~~nrlk~~~gL~~l~----~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 106 -------------GGDWERRNRLKVYEGLANLA----QRDFKEAAELFLDSLS 141 (177)
T ss_pred -------------cchHHHHHHHHHHHHHHHHH----hchHHHHHHHHHccCc
Confidence 1222222 223344433 6789999999988753
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=82.25 E-value=16 Score=26.28 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhhchhc
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA----GETAADHVKNVILQQLSATS 313 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~~~a~~~l~~~~~~l~~~~ 313 (331)
-++++++. ++.++.+.||..+...|++++|+..+...+.. +...+...+-.++..+..++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34444443 67788899999999999999999998888865 34566666666777666654
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.08 E-value=14 Score=27.77 Aligned_cols=95 Identities=9% Similarity=0.030 Sum_probs=54.3
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCCCCCCHHH-------HHHHHHHHHhCC--CHHHHH
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDK-------ALDSFLKGAARG--STLAMV 141 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~a~~~LG~~y~~g~g~~~~~~~-------A~~~~~~A~~~~--~~~a~~ 141 (331)
+...+..||.-.|+++..+......+..++ .....=|.++..--.+..|.+- +++.|.++...- .+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 445678899999988888887776655444 3444446665432222333332 455555555443 445566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.||.-+.....+++++.-.++++..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666655555555555555555544
|
|
| >cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.92 E-value=2.5 Score=29.38 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI 188 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~ 188 (331)
..|+.+..+|++.+ ..+++++|+.+|..+++
T Consensus 4 ~~Ai~~a~~Ave~D----~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 4 RDAVQFARLAVQRD----QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHH----HccCHHHHHHHHHHHHH
Confidence 35666666666654 35666666666666655
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.73 E-value=23 Score=28.52 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=54.3
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK 152 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~ 152 (331)
.+..++..++..++....-.-| +.+..-..-|.++.. .+++.+|+..|+...+.. .+.+.-.++.|+...+|
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP--~~~e~~~~~~~l~i~----r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRP--EFPELDLFDGWLHIV----RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCC--CchHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3455677777655544333333 567777778999998 899999999999987664 78888889999988776
Q ss_pred H
Q 020091 153 K 153 (331)
Q Consensus 153 ~ 153 (331)
.
T Consensus 94 ~ 94 (160)
T PF09613_consen 94 P 94 (160)
T ss_pred h
Confidence 4
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=81.51 E-value=5.2 Score=35.03 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=43.3
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 179 AVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 179 A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
|..||.+|+. +++...++.||.++.. .+|.-.|+-||-|++-. ..+.|..||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3455555543 3688999999999987 78899999999999754 667788899988865
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.23 E-value=47 Score=30.95 Aligned_cols=240 Identities=16% Similarity=0.017 Sum_probs=123.6
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHH---hcCC
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAM-VDAGLMY---WEMD 151 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~-~~lg~~~---~~~~ 151 (331)
-..|+-..|..+..+--+.......+.....=+..-.- .||++.|..-|+.-+ ++|+.. ..|--+| .+.|
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~----eG~~~~Ar~kfeAMl--~dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALL----EGDYEDARKKFEAML--DDPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh----cCchHHHHHHHHHHh--cChHHHHHhHHHHHHHHHhcc
Confidence 34566666655555544444433344433333333333 788888888887554 455542 1222222 2358
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhc--CCCCCCCHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA---GHVRAQYQLALCLHR--GRGVDFNLQEA 215 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~--G~g~~~d~~~A 215 (331)
+.+.|++|-+.+....+... ..+|.+.|+++....... +-..+-..-+.++.- +.-+.-|...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 88888888888887765443 566777777776553211 111111111111100 11124456666
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH-
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELAT- 291 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~- 291 (331)
...-..+.+. +...+-..-+..|+. ..+..++-..++.+=.. .+++. +..|...+--+-++.-++++.
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHHHHHHHHHH
Confidence 6666666554 455666666666655 33666666666666444 33332 222333332233344444443
Q ss_pred --HcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 292 --RAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 292 --~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
...+.++...+.....-+..++...+....+.+.+..|
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 23555556666666666666666666555555544433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.94 E-value=35 Score=38.85 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
.-++.+..++.+.+. .|.++.|..++-.|.+.+-+.+....|..++..||...|+..+++.++..-+.
T Consensus 1668 ~~ge~wLqsAriaR~----aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARL----AGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhHHHHHHHHHHHHh----cccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 356788889999988 89999999999999999999999999999999999999999999999764444
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.44 E-value=2.5 Score=39.79 Aligned_cols=85 Identities=24% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCHHHHH
Q 020091 209 DFNLQEAARWYLRAAEGGYVRAM--YNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~~~~~a~--~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
..+++.|+..|.+|++.+...|. -+-+..+.. ..++..|+.=+.+|++.. ...+++.-|...+..+.+.+|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 67899999999999998764442 233344443 558999999999998885 3566677788888899999999
Q ss_pred HHHHHHHHcCCHH
Q 020091 285 VYLELATRAGETA 297 (331)
Q Consensus 285 ~~~~~A~~~~~~~ 297 (331)
.-|+......+.+
T Consensus 93 ~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 93 LDLEKVKKLAPND 105 (476)
T ss_pred HHHHHhhhcCcCc
Confidence 9999888765443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.39 E-value=3.8 Score=25.11 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.++|+..|...||.+.|...++..+..++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 46789999999999999999999886543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.28 E-value=65 Score=31.99 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHH
Q 020091 118 RKNLDKALDSFLKGAAR--------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEE 178 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~ 178 (331)
.+||..+++||.....- ..+..+.+|+.||....+.++|.++++.|-+.++... .+++-++
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHH
Confidence 46666666666666532 2344556666666666666666666666665543333 4455555
Q ss_pred HHHHHHH
Q 020091 179 AVKLLYQ 185 (331)
Q Consensus 179 A~~~~~~ 185 (331)
|+.+..+
T Consensus 447 AL~~~~~ 453 (872)
T KOG4814|consen 447 ALTCLQK 453 (872)
T ss_pred HHHHHHH
Confidence 5555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 331 | ||||
| 2xm6_A | 490 | Crystal Structure Of The Protein Corresponding To L | 3e-09 |
| >pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-41
Identities = 40/186 (21%), Positives = 64/186 (34%), Gaps = 21/186 (11%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
LL G + G+GV +N +KAL + K G +Y D K+
Sbjct: 75 NGCHLL--GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK 132
Query: 155 AAISLYRQAAVLGDPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALC 201
A + + +A L D P + ++A+ +A +
Sbjct: 133 A-VEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191
Query: 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261
H G G N +EA Y +A E +N GEG+ + +QA + K+
Sbjct: 192 YHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251
Query: 262 GHGKAQ 267
G A
Sbjct: 252 GAKGAC 257
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-35
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 21/185 (11%)
Query: 133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ-------------PANAEEA 179
A +V G ++ A + +A L + + N ++A
Sbjct: 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKA 61
Query: 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 239
+A + + L + G+GV N +A ++Y +A + Y + Y
Sbjct: 62 ASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH 121
Query: 240 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-LFTEGE-----MMKAVVYLELATRA 293
G+ + ++A ++ +A D G LG L+ G + KA+ + A
Sbjct: 122 DGKVVTRDFKKAVEYFTKACDLNDGDGC--TILGSLYDAGRGTPKDLKKALASYDKACDL 179
Query: 294 GETAA 298
++
Sbjct: 180 KDSPG 184
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-35
Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 29/205 (14%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISL 159
L G + G+GV KNL KA + K + G +Y+
Sbjct: 39 SGCFNL--GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS---------- 86
Query: 160 YRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219
G +Q N +A++ +A + L H G+ V + ++A ++
Sbjct: 87 -------GQGVSQ--NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYF 137
Query: 220 LRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ------LEHGLG 273
+A + Y G G P ++A +A D HG G
Sbjct: 138 TKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197
Query: 274 LFTEGEMMKAVVYLELATRAGETAA 298
+A+ A
Sbjct: 198 --ATKNFKEALARYSKACELENGGG 220
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 5e-28
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 21/157 (13%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
E L G + G+ V ++ KA++ F K G +Y D K+
Sbjct: 111 EGCASL--GGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKK 168
Query: 155 AAISLYRQAAVLGDPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALC 201
A + Y +A L D N +EA+ +A + + L
Sbjct: 169 AL-ASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAM 227
Query: 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCY 238
+ G GV N ++A + + + G A
Sbjct: 228 QYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLK 264
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-40
Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 28/223 (12%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
+A L G + G GV+ + +++ F A +G G Y+ D
Sbjct: 112 QAQQNL--GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169
Query: 155 AAISLYRQAAVLGDPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALC 201
A Y +AA G+ + N + + +++ +G Q LA
Sbjct: 170 AR-EWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADM 228
Query: 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261
+ G GV + ++ + ++AE G A + G +A +W +++A+
Sbjct: 229 YYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288
Query: 262 GHGKAQLEHGLGLFTEGE------MMKAVVYLELATRAGETAA 298
G+ Q L+ +G +A+ + + G+ A
Sbjct: 289 GNSDGQYYLAH-LYDKGAEGVAKNREQAISWYTKSAEQGDATA 330
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-40
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 27/221 (12%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW------EMDKK 153
A L G + G K KAL+ + K A +G++ +Y +++
Sbjct: 256 IAQFRL--GYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNRE 313
Query: 154 EAAISLYRQAAVLGDPAAQ------------PANAEEAVKLLYQASIAGHVRAQYQLALC 201
+A IS Y ++A GD AQ ++AV+ +A+ G AQ+ L
Sbjct: 314 QA-ISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNA 372
Query: 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261
L +G+GV + Q+AA W +AAE G A Y +G G+ + QA W A+
Sbjct: 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432
Query: 262 GHGKAQLE---HGLGLFTEGEMMKAVVYLELATRAGETAAD 299
E T ++ +A L+ + E A
Sbjct: 433 DMNLFGTENRNITEKKLTAKQLQQA---ELLSQQYIEKYAP 470
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 9e-39
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 27/210 (12%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQAAVLG 167
+ + L+ + A G A ++ G Y+ D +A +R+AA G
Sbjct: 15 ALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAM-DWFRRAAEQG 73
Query: 168 DPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214
A+ P + +AV +A++ G +AQ L + H G GV + E
Sbjct: 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133
Query: 215 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ------L 268
+ +W+ AAE G + Y G+G+ + AR+W +AA+ G+ +
Sbjct: 134 SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMY 193
Query: 269 EHGLGLFTEGEMMKAVVYLELATRAGETAA 298
GLG E + + + +G+
Sbjct: 194 SRGLG--VERNDAISAQWYRKSATSGDELG 221
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 7e-32
Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 100 EAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKK---EA 155
+ L + G GV KN ++A+ + K A +G A + G +Y+ + + +
Sbjct: 292 DGQYYL--AHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKK 349
Query: 156 AISLYRQAAVLGDPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALCL 202
A+ +R+AA G+ AAQ + ++A + +A+ G AQ QL
Sbjct: 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY 409
Query: 203 HRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAA 259
+ G GV+ + +A W+ A+ + L + +++++++ A
Sbjct: 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYA 469
Query: 260 DCGHGKAQLEHGLGLFTEG 278
+ Q G
Sbjct: 470 PEAWARMQKLKAQSAVKTG 488
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 150 MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 209
M K A+ L A++ PA ++ L Q + +G +AQ +L +G
Sbjct: 1 MKKSLLAVMLTGLFALVS----LPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETT 56
Query: 210 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ-- 267
+L +A W+ RAAE GY A Y L Y GEG+P + QA W K+AA G +AQ
Sbjct: 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116
Query: 268 ----LEHGLGLFTEGEMMKAVVYLELATRAGETAA 298
G G + + ++V + LA G +
Sbjct: 117 LGVMYHEGNG--VKVDKAESVKWFRLAAEQGRDSG 149
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 5e-37
Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 31/251 (12%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK------K 153
V L ++ + + + L G +RG+ A + D +
Sbjct: 177 ICYVEL--ATVYQKKQQP-EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233
Query: 154 EAAISLYRQAAVLGDPAAQ------------PANAEEAVKLLYQASIAGHVRAQYQLALC 201
+ A +L + A G PA+ + E+ +K L A RA+ L
Sbjct: 234 KTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKL 292
Query: 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261
+ G+ V + + A + +A A Y Y G + ++A + AA
Sbjct: 293 YYEGKWVPADAKAAEAHFEKAVGREV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351
Query: 262 GHGKAQL------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRD 315
G A G G T+ + + A V+ +LA A+ + + L+ R
Sbjct: 352 GQNSADFAIAQLFSQGKG--TKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRA 409
Query: 316 RAMLVVDSWRA 326
+V A
Sbjct: 410 EGQRLVQQELA 420
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 20/218 (9%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKK---EAA 156
A + + + A L+ A G + V + ++ + E
Sbjct: 212 TAQRVDSVARVLGDATLGTPDEKTAQA-LLEKIAPGYPASWVSLAQLLYDFPELGDVEQM 270
Query: 157 ISLYRQAAVLGDPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALCLH 203
+ P A+ PA+A+ A ++ ++ V A Y L
Sbjct: 271 MKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAH-FEKAVGREVAADYYLGQIYR 329
Query: 204 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 263
RG Q+A L AA G A + + +S G+G A + + A
Sbjct: 330 RGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389
Query: 264 GKAQ--LEHGLGLFTEGEMMKAVVYLELATRAGETAAD 299
+A T + + ++ A T A
Sbjct: 390 PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQ 427
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-28
Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 20/174 (11%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLG 167
+ ++++ + G A A + G +Y+E D K A + + +A
Sbjct: 259 YDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAE-AHFEKAV-GR 316
Query: 168 DPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214
+ AA ++A+ L A+ G A + +A +G+G +
Sbjct: 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLN 376
Query: 215 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 268
A + A A + + + Q + AA ++ L
Sbjct: 377 AYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTL 430
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 36/211 (17%), Positives = 58/211 (27%), Gaps = 30/211 (14%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY------WEMDKKEAAISLYRQAAVL 166
G + +A + + AA S A G + E + EA SL ++A
Sbjct: 46 VGTRDPAQIKQAE-ATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAE-SLLKKAFAN 103
Query: 167 GDPAAQ-------------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213
G+ N ++ Q AG+ A L L+R +G
Sbjct: 104 GEGNTLIPLAMLYLQYPHSFPNVNAQQQI-SQWQAAGYPEAGLAQVL-LYRTQGTYDQHL 161
Query: 214 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL----- 268
+ +AA + Y + P + K M+ G AQ
Sbjct: 162 DDVERICKAALNTTDICYVELATVYQKKQQ-PEQQAELLKQMEAGVSRGTVTAQRVDSVA 220
Query: 269 -EHGLGLFTEGEMMKAVVYLELATRAGETAA 298
G + A LE +
Sbjct: 221 RVLGDATLGTPDEKTAQALLEKIAPGYPASW 251
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 9e-24
Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 19/172 (11%)
Query: 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAAQ------------PANAEEAVKLLYQASIAG 190
A D A Y+Q A LG AQ PA ++A Y+A+
Sbjct: 10 ANEALKRGDTVTAQ-QNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEAT-YRAAADT 67
Query: 191 HVRAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHR 249
RAQ +L L G + EA +A G + ++ Y +
Sbjct: 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN 127
Query: 250 QARKWMKRAADCGHGKAQLEHGLGLFTEG---EMMKAVVYLELATRAGETAA 298
++ + A G+ +A L L T+G + + V + A
Sbjct: 128 AQQQISQWQAA-GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDIC 178
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 5/111 (4%)
Query: 166 LGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225
L + A + + A + Q + G+ AQ LA R + A RAA
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQI--KQAEATYRAAAD 66
Query: 226 GYVRAMYNTSLCYSFGEG-LPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 275
RA + G H +A +K+A G G + L +
Sbjct: 67 TSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIP--LAML 115
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 19/136 (13%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
A L G+ ++ G + KALD L A G A ++ + D
Sbjct: 319 AADYYL--GQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLN 376
Query: 155 AAISLYRQAAVLGDPAAQ-----------PANAEEAVKLLYQASIAGHVRAQYQLALCLH 203
A + A P A PA E +L+ Q A AQ L L
Sbjct: 377 A-YVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHAL 435
Query: 204 RGRGVDFNLQEAARWY 219
+ + +L E +
Sbjct: 436 QEEDGEESLLEHHHHH 451
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-36
Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 23/200 (11%)
Query: 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ--------- 172
+ + + A G A + + A ++AA GD A
Sbjct: 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR 62
Query: 173 ---PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-- 227
A+ +A +L +A AG + LA L + ++ A AA
Sbjct: 63 NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD 122
Query: 228 --VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-GKAQL------EHGLGLFTEG 278
V A L Y+ G P +A ++ K ++ G A+ + G F E
Sbjct: 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEP 182
Query: 279 EMMKAVVYLELATRAGETAA 298
KA+ +L ++ G
Sbjct: 183 NKQKALHWLNVSCLEGFDTG 202
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 3e-31
Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 25/173 (14%)
Query: 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYW----EMDKKEAAISLYRQAAVLGDPAAQ-- 172
+ KA K AA+G A+ + + D +A L +A G + +
Sbjct: 32 GDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQA-RQLAEKAVEAGSKSGEIV 90
Query: 173 -----------PANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAAR 217
+ A+ LL A+ V AQ L L G + +A+
Sbjct: 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150
Query: 218 WYLRAAE-GGYVRAMYNTSLCYSFGEGL--PLSHRQARKWMKRAADCGHGKAQ 267
++ ++ A Y + + GE + ++A W+ + G
Sbjct: 151 YFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC 203
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 7e-21
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTS 235
A E Q + AG RAQY LA + Q+A W +AA G A+ +
Sbjct: 2 ATEPGSQYQQQAEAGDRRAQYYLADTWVSSG----DYQKAEYWAQKAAAQGDGDALALLA 57
Query: 236 LCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-LFTEGE-----MMKAVVYLEL 289
+ QAR+ ++A + G + L + + + A+ L+
Sbjct: 58 QLKIRNPQ-QADYPQARQLAEKAVEAGSKSGE--IVLARVLVNRQAGATDVAHAITLLQD 114
Query: 290 ATRAGETAA 298
A R E+ A
Sbjct: 115 AARDSESDA 123
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 7e-20
Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 29/159 (18%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
+A+ LL + + + +A K GS + + D
Sbjct: 51 DALALL--AQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAH 107
Query: 155 AAISLYRQAAVLGDPA----AQ-------------PANAEEAVKLLYQASIAGHV-RAQY 196
A I+L + AA + AQ P + +A + +S A+Y
Sbjct: 108 A-ITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEY 166
Query: 197 QLALCLHRGRG--VDFNLQEAARWYLRAAEGGYVRAMYN 233
+ +G ++ N Q+A W + G+
Sbjct: 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEE 205
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 29/131 (22%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA----GLMYW-----EM 150
++L + + + ++ A+ A + A VDA GL+Y
Sbjct: 86 SGEIVL--ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143
Query: 151 DKKEAAISLYRQAAVLGDPA-AQ---------------PANAEEAVKLLYQASIAGHVRA 194
D +A+ ++ ++ L A+ N ++A+ L + + G
Sbjct: 144 DDVKAS-EYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202
Query: 195 QYQLALCLHRG 205
+ + +G
Sbjct: 203 CEEFDR-ISKG 212
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 8e-32
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
Query: 156 AISLYRQAAVLGDPAAQ-------PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 208
AI Y +A L + N ++ + L +A L G+ V
Sbjct: 14 AIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYV 73
Query: 209 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 268
+L++AA++Y +A G+G+ + +QA K ++A G A
Sbjct: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC- 132
Query: 269 EHGLGLF 275
L +
Sbjct: 133 -GILNNY 138
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 7e-23
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 14/132 (10%)
Query: 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY 232
+ ++A++ +A + L N Q+ ++ +A E
Sbjct: 8 KKDLKKAIQYYVKACELNEMFGCLSL------VSNSQINKQKLFQYLSKACELNSGNGCR 61
Query: 233 NTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL------EHGLGLFTEGEMMKAVVY 286
Y G+ + R+A ++ +A L G G +AV
Sbjct: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKG--VVKNEKQAVKT 119
Query: 287 LELATRAGETAA 298
E A R G A
Sbjct: 120 FEKACRLGSEDA 131
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 4e-14
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261
+ G V +L++A ++Y++A E + + ++ ++ +++ +A +
Sbjct: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLS------LVSNSQINKQKLFQYLSKACEL 54
Query: 262 GHGKAQLEHGLGLF-TEGE-----MMKAVVYLELATRAGETAA 298
G LG F G+ + KA Y A +
Sbjct: 55 NSGNGC--RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-10
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 55/121 (45%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172
+G+ V+K+L KA + Y +A L D
Sbjct: 69 NGKYVKKDLRKA---------------------AQY-----------YSKACGLNDQ--- 93
Query: 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY 232
L + G+GV N ++A + + +A G A
Sbjct: 94 --------------------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133
Query: 233 N 233
Sbjct: 134 I 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.98 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.97 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.89 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.83 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.82 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.82 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.8 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.8 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.79 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.78 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.78 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.78 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.77 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.77 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.77 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.76 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.76 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.72 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.71 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.7 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.69 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.68 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.67 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.66 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.66 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.65 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.64 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.63 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.63 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.61 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.59 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.56 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.56 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.55 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.55 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.54 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.51 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.48 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.48 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.41 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.41 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.39 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.37 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.36 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.34 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.33 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.32 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.31 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.31 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.3 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.3 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.29 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.26 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.25 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.24 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.23 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.22 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.21 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.2 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.17 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.16 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.16 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.14 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.13 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.12 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.12 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.12 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.1 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.08 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.07 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.04 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.02 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.99 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.97 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.97 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.97 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.96 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.95 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.62 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.61 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.6 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.52 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.51 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.41 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.37 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.07 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.02 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.02 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.95 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.9 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.82 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.77 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.76 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.69 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.66 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.28 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.96 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.58 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.3 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.23 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.93 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.76 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.53 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.18 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 92.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.72 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.23 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.22 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 87.69 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.34 | |
| 4ae4_A | 118 | Ubiquitin-associated protein 1; protein transport, | 83.84 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 81.96 |
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=260.51 Aligned_cols=246 Identities=17% Similarity=0.167 Sum_probs=222.2
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHhcC----CC
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAM--VDAGLMYWEM----DK 152 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~--~~lg~~~~~~----~~ 152 (331)
+.+.++......+.+.+. .+++.+++.||.+|.. .|+..++++|+.||+++++.|++.+. ++||.+|..+ +|
T Consensus 155 ~~~~~~~~~a~~~~~~a~-~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAAL-NTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHHHT-TTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHHHH-cCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 334444444455555544 5788899999999998 56666999999999999999988877 9999999887 89
Q ss_pred HHHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 153 KEAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
+++|+.+|++++ .+++.+ ..+|+++|+.||+++++.|++.++++||.+|..|.|+.+|+++|+.||+
T Consensus 233 ~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 233 EKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999 555444 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCH
Q 020091 221 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 221 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~ 296 (331)
+|+ .|++.++++||.+|..|.|+++|+++|+.||++|++.|++.++++||.+|.. .+|+++|+.||++|++.|+.
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 999 9999999999999999999999999999999999999999999999999875 56999999999999999999
Q ss_pred HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCC
Q 020091 297 AADHVKNVILQQLSATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 297 ~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~ 328 (331)
.+...+..+...+++.++.++..++++|++.+
T Consensus 391 ~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 391 EANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=252.70 Aligned_cols=242 Identities=24% Similarity=0.297 Sum_probs=133.3
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (331)
.+++.+|. .+++.+.+.+++.+++.||.+|..|.|+.+|+++|+.||++|++.|++.++++||.+|.. .+++
T Consensus 56 ~~~~~~A~----~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAM----DWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 45555553 333333334566666666666666666666666666666666666666666666666665 3566
Q ss_pred HHHHHHHHHHHHcCCCCC-------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|+++++.+++.+ ..+|+++|+.+|+++++.+++.++++||.+|..|.|+.+|+++|+.||+
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 666666666665554333 2455555555555555555555555555555555555555555555555
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCH
Q 020091 221 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 221 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~ 296 (331)
++++.|++.+++.||.+|..|.|+.+++++|+.||+++++.+++.++++||.+|.. .+++++|+.+|++|++.|+.
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555555555555555555555555555555555555555544 45555555555555555555
Q ss_pred HHHHHHHHHHhhh---chhcHHHHHHHHHh
Q 020091 297 AADHVKNVILQQL---SATSRDRAMLVVDS 323 (331)
Q Consensus 297 ~a~~~l~~~~~~l---~~~~~~~a~~~~~~ 323 (331)
.+.++++.++... ...+.++|...+++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 5555555544432 12344444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-31 Score=250.67 Aligned_cols=245 Identities=17% Similarity=0.183 Sum_probs=216.6
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (331)
.+++.+| ..+++++.+.+++.+++.||.+|..|.|+.+|+++|+.||++|++.|++.++++||.+|.. .+++
T Consensus 92 ~~~~~~A----~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQA----VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHH----HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 6778888 4555666667899999999999999999999999999999999999999999999999988 5799
Q ss_pred HHHHHHHHHHHHcCCCCC-------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|+++++.+++.+ ..+++++|+.||+++++.+++.++++||.+|..|.|+.+|+++|+.||+
T Consensus 168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999876554 3789999999999999999999999999999999888999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCC
Q 020091 221 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTE-----GEMMKAVVYLELATRAGE 295 (331)
Q Consensus 221 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~-----~~~~~A~~~~~~A~~~~~ 295 (331)
++++.|++.++++||.+|..|.|+.+|.++|+.||+++++.+++.+++.||.+|... +++++|+.+|++|++.++
T Consensus 248 ~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~ 327 (490)
T 2xm6_A 248 QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD 327 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999888899999999999999999999999999998887 899999999999999999
Q ss_pred HHHHHHHHHHHhhhc-hhcHHHHHHHHHhhhc
Q 020091 296 TAADHVKNVILQQLS-ATSRDRAMLVVDSWRA 326 (331)
Q Consensus 296 ~~a~~~l~~~~~~l~-~~~~~~a~~~~~~~~~ 326 (331)
..+.++++.++.... ..+.++|...+++..+
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 999999998887642 4477888888887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=229.10 Aligned_cols=239 Identities=19% Similarity=0.231 Sum_probs=216.6
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLM 146 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~ 146 (331)
..+......+..+++++|...+.+..+ .+++.+++.||.+|..|.|+.+++++|+.+|+++++.+++.++++||.+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344455556677899999766655554 6789999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCCHHHHHHHHHHHHHcCCCCC---------C----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC
Q 020091 147 YWE----MDKKEAAISLYRQAAVLGDPAA---------Q----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 147 ~~~----~~~~~~A~~~~~~a~~~~~~~~---------~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~ 209 (331)
|.. .+++++|+.+|+++++.+++.+ . .+++++|+.+|+++++.+++.++++||.+|..|.++.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCC
Confidence 999 8999999999999999875544 3 8999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHH
Q 020091 210 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVV 285 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~ 285 (331)
+++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999999999999999999999999999999998899999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh
Q 020091 286 YLELATRAGETAADHVKNVILQQL 309 (331)
Q Consensus 286 ~~~~A~~~~~~~a~~~l~~~~~~l 309 (331)
+|++|++.++..+..++..+....
T Consensus 244 ~~~~a~~~~~~~a~~~l~~~~~~~ 267 (273)
T 1ouv_A 244 NFKKGCKLGAKGACDILKQLKIKV 267 (273)
T ss_dssp HHHHHHHHTCHHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999998887665433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.4e-31 Score=222.93 Aligned_cols=194 Identities=19% Similarity=0.103 Sum_probs=176.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 89 KSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 89 ~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
..+++++++.+++.+++.||.+|.. .+|+++|+.||++|++.|++.++++||.+|..++
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g----------------- 64 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVS----SGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNP----------------- 64 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSST-----------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-----------------
Confidence 4567777778999999999999999 8999999999999999999999999999997732
Q ss_pred CCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCc
Q 020091 169 PAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGL 244 (331)
Q Consensus 169 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~ 244 (331)
+.+|+++|+.||+++++.+++.++++||.+|..|.|+.+|+++|++||++|++.|+ +.++++||.+|..|.|+
T Consensus 65 ---~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 65 ---QQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp ---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 44567777777777777789999999999999999999999999999999999999 99999999999999999
Q ss_pred cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020091 245 PLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTE------GEMMKAVVYLELATRAGETAADHVKNVIL 306 (331)
Q Consensus 245 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~------~~~~~A~~~~~~A~~~~~~~a~~~l~~~~ 306 (331)
++|+++|+.||++|++. +++.++++||.+|... .|+++|+.||++|++.|+..++.++..+.
T Consensus 142 ~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l~ 210 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRIS 210 (212)
T ss_dssp SCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999998 8999999999999753 39999999999999999999999887664
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=220.79 Aligned_cols=229 Identities=14% Similarity=0.148 Sum_probs=211.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCC-
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKKEAAISLYRQAAVLGDPAA- 171 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~~- 171 (331)
+.+++.+++.+|.+|.. .+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.+|+++++.+++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45789999999999999 79999999999999999999999999999999 8999999999999999975544
Q ss_pred --------C----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 172 --------Q----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 239 (331)
Q Consensus 172 --------~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~ 239 (331)
. .+++++|+.+|+++++.+++.++++||.+|..|.++.+++++|+.+|++|++.+++.+++++|.+|.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--chhc
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL--SATS 313 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l--~~~~ 313 (331)
.|.++.+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.+|+++++.++..+..+++.++... ..++
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccC
Confidence 9988899999999999999999999999999999999 999999999999999999999999999998752 1567
Q ss_pred HHHHHHHHHhhhcCCC
Q 020091 314 RDRAMLVVDSWRAMPS 329 (331)
Q Consensus 314 ~~~a~~~~~~~~~~~~ 329 (331)
.++|...+++..+..|
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7889999988776554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=236.62 Aligned_cols=239 Identities=15% Similarity=0.071 Sum_probs=197.9
Q ss_pred hHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---------------------------
Q 020091 80 QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------------------------- 132 (331)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--------------------------- 132 (331)
++.+|. .+++++.+.+++.+++.||.+|..|.++..+ .++++++.+++
T Consensus 89 ~~~~A~----~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~-~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 89 EHHEAE----SLLKKAFANGEGNTLIPLAMLYLQYPHSFPN-VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHH----HHHHHHHHTTCSSCHHHHHHHHHHCGGGCTT-CCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CHHHHH----HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 555663 4444444456666777777777666555444 44555555444
Q ss_pred --------hCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCCCC---------------CccCHHHHHHHHHHH
Q 020091 133 --------ARGSTLAMVDAGLMYWEMD---KKEAAISLYRQAAVLGDPAA---------------QPANAEEAVKLLYQA 186 (331)
Q Consensus 133 --------~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~A~~~~~~a 186 (331)
..+++.++++||.+|...| ++++|+.+|+++++.+++.+ ..+|+++|+.||+++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 3455667777777777777 99999999999999998876 458999999999999
Q ss_pred HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHH
Q 020091 187 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA 266 (331)
Q Consensus 187 ~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 266 (331)
+ +|++.++++||.+|..|.+ .+|+++|+.||++|++.|++.++++||.+|..|.|+++|+++|+.||++|+ .|++.+
T Consensus 244 a-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A 320 (452)
T 3e4b_A 244 A-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAA 320 (452)
T ss_dssp G-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHH
T ss_pred c-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHH
Confidence 9 9999999999999775554 889999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--chhcHHHHHHHHHhhhc
Q 020091 267 QLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL--SATSRDRAMLVVDSWRA 326 (331)
Q Consensus 267 ~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l--~~~~~~~a~~~~~~~~~ 326 (331)
+++||.+|.. ..|+++|+.||++|++.|+..+.++++.++... .+.+..+|..++++..+
T Consensus 321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 321 DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 9999998887 459999999999999999999999999998753 35688888888887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=197.95 Aligned_cols=181 Identities=16% Similarity=0.051 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
.+|+.||+++++.|++.++++||.+|...+++++|+.||+++++. |++.++++||.+
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----------------------g~~~a~~~lg~~ 59 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----------------------GDGDALALLAQL 59 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHH
Confidence 468999999999999999999999999887777777777666654 789999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHhc-
Q 020091 202 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFT- 276 (331)
Q Consensus 202 y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~- 276 (331)
|..| |+.+|+++|++||++|++.|++.++++||.+|..|.|+.+|+++|+.||++|++.++ +.++++||.+|..
T Consensus 60 y~~~-g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 60 KIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp TTSS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHcC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 9984 888999999999999999999999999999999999999999999999999999998 8999999999998
Q ss_pred ---cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhh----chhcHHHHHHHHHhhhc
Q 020091 277 ---EGEMMKAVVYLELATRA-GETAADHVKNVILQQL----SATSRDRAMLVVDSWRA 326 (331)
Q Consensus 277 ---~~~~~~A~~~~~~A~~~-~~~~a~~~l~~~~~~l----~~~~~~~a~~~~~~~~~ 326 (331)
.+|+++|+.||++|++. ++..+.++++.++... .+.+.++|...+++..+
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999998 8999999999999775 35589999999988654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=177.47 Aligned_cols=136 Identities=20% Similarity=0.167 Sum_probs=124.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC
Q 020091 112 KHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH 191 (331)
Q Consensus 112 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 191 (331)
..|.||.+|+++|+.||++|++.|++.++ ||.+|..++..++|+.||+++++. |+
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-----------------------g~ 56 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL-----------------------NS 56 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-----------------------TC
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-----------------------CC
Confidence 46889999999999999999999999999 999999887777666666665554 78
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 271 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 271 (331)
+.++++||.+|..|.|+.+|+++|++||++|++.|++.++++||.+|..|.|+++|.++|+.||++|++.|++.++.+|+
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred H
Q 020091 272 L 272 (331)
Q Consensus 272 ~ 272 (331)
.
T Consensus 137 ~ 137 (138)
T 1klx_A 137 N 137 (138)
T ss_dssp -
T ss_pred h
Confidence 5
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-21 Score=175.25 Aligned_cols=242 Identities=15% Similarity=0.045 Sum_probs=135.8
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK 152 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~ 152 (331)
.+..+++++|...+....+..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.+++++|.++...|+
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKE----RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence 3455666666666655555533 356667777777766 667777777777666543 55666666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 153 KEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
+++|+..|++++...+... ..+++++|+.+|+++++ ++++.+++++|.+|.. .+++++|+.+|
T Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~ 192 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA----QGEIWLAIHHF 192 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 6666666666666655443 34566666666666543 2445555556655554 45555555555
Q ss_pred HHHHHC--CC----------------------------------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--
Q 020091 220 LRAAEG--GY----------------------------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 261 (331)
Q Consensus 220 ~~A~~~--~~----------------------------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 261 (331)
+++++. ++ ..++.++|.+|.. .+++++|+.+|+++++.
T Consensus 193 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCS
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence 555432 33 4444455555433 23555555555555554
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 262 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 262 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++.+++.+|.++...|++++|+.+|+++++..+..+.............++.++|...+++.++..|.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 234555556666666666666666666665554322222222223333445556666666665555553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-21 Score=169.19 Aligned_cols=248 Identities=12% Similarity=-0.005 Sum_probs=212.2
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++.+|...+.+.++..+. +..++..++.++.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVE----LNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 455566677789999999999998887664 56777788888888 899999999999998864 8899999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 146 MYWEMD-KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 146 ~~~~~~-~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
++...| ++++|+.+|++++...+... ..+++++|+.+|+++++. ++..+++.+|.+|.. .++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~ 174 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNN 174 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----Hhh
Confidence 999999 99999999999999987766 789999999999999874 678899999999987 789
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccC
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----------GHGKAQLEHGLGLFTEG 278 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~~~~~~ 278 (331)
+++|+.+|+++++. .++.+++.+|.+|.. .+++++|..+|++++.. ....+++.+|.++...|
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999876 678899999999976 55999999999999874 34678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 279 EMMKAVVYLELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~~~~--~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
++++|+.+|+++++..+. .+..+++.++ ...++.++|...+++.++..|.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIH--SLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHH--HHHTCHHHHHHHHHTTTTTCSCC
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHH--HHhccHHHHHHHHHHHHccCCCc
Confidence 999999999999987654 4555555554 55678889999999999888864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=173.70 Aligned_cols=240 Identities=17% Similarity=0.054 Sum_probs=190.6
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (331)
...|++++|...+.+.++..|+ ++.++..+|.++.. .+++++|+.+|++++.. +++.++.++|.++...|++
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPD--LYCVRSDLGNLLKA----LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3445555555555555544332 45566667777766 67788888888877765 3677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|++++..++... ..+++++|+..|++++. ++++.+++++|.+|.. .+++++|+.+|+
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 261 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYR 261 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 888888888888766554 67888889999988876 4678999999999987 789999999999
Q ss_pred HHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-
Q 020091 221 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE- 295 (331)
Q Consensus 221 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~- 295 (331)
++++. +++.++.++|.+|.. .+++++|+.+|+++++. .+..++..+|.++...|++++|+.+|+++++..+
T Consensus 262 ~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 262 RAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99886 578999999999976 55999999999999887 5688999999999999999999999999998754
Q ss_pred -HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 296 -TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 296 -~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
..+..+++.++ ...++.++|...+++..+..|.+
T Consensus 338 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 338 FAAAHSNLASVL--QQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp CHHHHHHHHHHH--HTTTCCHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCC
Confidence 45556655555 55678889999999999888864
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-22 Score=155.98 Aligned_cols=127 Identities=18% Similarity=0.131 Sum_probs=118.7
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHH
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
+.+|+++|+.||+++++.|++.++ ||.+|..|. +.++|++||++|++.|++.++++||.+|..|.|+++|+++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~----~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQI----NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 567899999999999999999999 999999864 46679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 252 RKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNV 304 (331)
Q Consensus 252 ~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~ 304 (331)
+.||++|++.|++.++++||.+|.. .+|+++|+.||++|++.|+..++.+++.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 9999999999999999999999999 8999999999999999999999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=160.18 Aligned_cols=194 Identities=13% Similarity=0.012 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+..|++++... ++.+++++|.++...|++++|+.+|+++++++|
T Consensus 3 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-------- 70 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-------- 70 (217)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------
Confidence 468899999999999 899999999999999874 999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD-----------FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG 243 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~-----------~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g 243 (331)
+++.+++++|.+|.. . +++++|+..|+++++. +++.+++++|.+|..
T Consensus 71 -------------~~~~a~~~lg~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~--- 130 (217)
T 2pl2_A 71 -------------RYLGGYMVLSEAYVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL--- 130 (217)
T ss_dssp -------------TCHHHHHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred -------------CcHHHHHHHHHHHHH----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---
Confidence 589999999999986 6 8899999999999875 778999999999976
Q ss_pred ccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHH
Q 020091 244 LPLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 322 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~ 322 (331)
.+++++|+.+|+++++. +++.+++++|.+|...|++++|+.+|+++++..+................++.++|...++
T Consensus 131 -~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 131 -LGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp -TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred -cCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45999999999999766 6778899999999999999999999999998765444444444444566777888888877
Q ss_pred hhh
Q 020091 323 SWR 325 (331)
Q Consensus 323 ~~~ 325 (331)
+.-
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-20 Score=167.23 Aligned_cols=240 Identities=11% Similarity=0.006 Sum_probs=204.9
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAE----NENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 566677778889999999999999888654 79999999999999 899999999999999864 8999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCC---------------------CCCccCHHHHHHHHHHHHHC--C--CHHHHHHHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDP---------------------AAQPANAEEAVKLLYQASIA--G--HVRAQYQLAL 200 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~---------------------~~~~~~~~~A~~~~~~a~~~--~--~~~a~~~lg~ 200 (331)
+|...|++++|+.+|++++...+. ....+++++|+.+|+++++. . ++.+++++|.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999876432 12688999999999999875 4 7899999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 201 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 201 ~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..++++||.+|..
T Consensus 222 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 222 LFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9987 78999999999999875 678999999999977 45999999999999887 568899999999999
Q ss_pred cCCHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 277 EGEMMKAVVYLELATRAG--------------ETAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~--------------~~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.|++++|+.+|+++++.. .......++.++..+.+.+ .+....++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE--LFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH--HHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH--HHHHHHHh
Confidence 999999999999999864 2456677777776665553 44444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=162.00 Aligned_cols=249 Identities=12% Similarity=-0.010 Sum_probs=138.7
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (331)
+..+...+..|++++|...+...++..++ ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33344445556666666665555554332 45566666666666 56666666666666554 255566666666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCC-------------------------------------------------CCC------
Q 020091 147 YWEMDKKEAAISLYRQAAVLGD-------------------------------------------------PAA------ 171 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~-------------------------------------------------~~~------ 171 (331)
+...|++++|+.+|++++...+ ...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 6666666666666666665544 222
Q ss_pred -----CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH----------
Q 020091 172 -----QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY---------- 232 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~---------- 232 (331)
..+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. ++..++.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 344445555555544432 344555555555543 44455555555555443 2222221
Q ss_pred --HHHHHHhcCCCccccHHHHHHHHHHHHHcCC--H----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 233 --NTSLCYSFGEGLPLSHRQARKWMKRAADCGH--G----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 304 (331)
Q Consensus 233 --~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~ 304 (331)
.+|.++.. .+++++|+.+|+++..... + .++..+|.++...|++++|+.+|+++++..+.........
T Consensus 237 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 237 LIESAEELIR----DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22444433 2366666666666665422 2 2345677888888888888888888877654333333333
Q ss_pred HHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 305 ILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 305 ~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+......++.++|...+++..+..|.+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 333445667778888888887777764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=160.59 Aligned_cols=243 Identities=14% Similarity=0.011 Sum_probs=206.8
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 45666667888999999999998888765 479999999999999 899999999999998874 8899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCC--------------------------CCccCHHHHHHHHHHHHHC--CCHHHHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPA--------------------------AQPANAEEAVKLLYQASIA--GHVRAQYQ 197 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 197 (331)
++...|++++|+.+|++++...+.. ...+++++|+.+++++++. .++.+++.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 9999999999999999999875433 2456789999999998764 67999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 020091 198 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG 273 (331)
Q Consensus 198 lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 273 (331)
+|.+|.. .+++++|+.+|+++++. ++..++..+|.+|.. .+++++|+.+|+++... .+..+++.+|.+
T Consensus 178 la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 178 LGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999987 78999999999999875 678999999999976 45999999999999887 567899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 274 LFTEGEMMKAVVYLELATRAGET--------------AADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~~~~--------------~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+...|++++|+.+|+++++..+. .+..+++.++ ...++.++|...+++.++
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL--NVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH--HHTTCHHHHHHHTTCCSH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Confidence 99999999999999999986544 3444555555 455677888888877553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=163.17 Aligned_cols=240 Identities=11% Similarity=0.002 Sum_probs=205.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++.+|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 140 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALAV 140 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35566667788999999999988887654 479999999999999 899999999999999874 8999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC--------------------------CccCHHHHHHHHHHHHHC--C--CHHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA--------------------------QPANAEEAVKLLYQASIA--G--HVRAQ 195 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~A~~~~~~a~~~--~--~~~a~ 195 (331)
+|...|++++|+.+|++++...+... ..+++++|+.+|+++++. . ++.++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999999876543 246789999999999864 4 68999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+++.+|
T Consensus 221 ~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 292 (368)
T 1fch_A 221 CGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999987 78999999999999875 678999999999976 45999999999999876 5688999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcC--C-----------HHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 272 LGLFTEGEMMKAVVYLELATRAG--E-----------TAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~~--~-----------~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
.+|...|++++|+.+|+++++.. . ..+...++.++..+.+.+ +|..+.++
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~ 355 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD--AYGAADAR 355 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG--GHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH--hHHHhHHH
Confidence 99999999999999999998753 3 567778888877665554 55555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-20 Score=156.51 Aligned_cols=191 Identities=13% Similarity=-0.023 Sum_probs=156.4
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA 143 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l 143 (331)
...+..+...+..|++++|...+.+.++..| .++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLK----LGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3445566667889999999988888877655 489999999999999 899999999999999874 89999999
Q ss_pred HHHHhcC-----------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCH
Q 020091 144 GLMYWEM-----------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNL 212 (331)
Q Consensus 144 g~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~ 212 (331)
|.++... |++++|+..|+++++..| +++.+++++|.+|.. .+++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~~~~~lg~~~~~----~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---------------------RYAPLHLQRGLVYAL----LGER 134 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHH----cCCh
Confidence 9999999 999999999999988876 589999999999987 8899
Q ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 213 QEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 213 ~~A~~~~~~A~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.++...|++++|+.+|++
T Consensus 135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 135 DKAEASLKQALALEDTPEIRSALAELYLS----MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999765 788999999999976 55999999999999887 6789999999999999999999999998
Q ss_pred HH
Q 020091 290 AT 291 (331)
Q Consensus 290 A~ 291 (331)
+-
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 74
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-20 Score=149.92 Aligned_cols=171 Identities=20% Similarity=0.200 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++..++.||.+|.. .|++++|+.+|+++++.. ++.+++.+|.+|...|++++|+..+.++....+
T Consensus 4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--------- 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--------- 70 (184)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---------
Confidence 57889999999999 999999999999999874 999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.++..+|.++.. .+++++|..++.++... .+..++..+|.+|.. .+++++|+.+|
T Consensus 71 ------------~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~ 130 (184)
T 3vtx_A 71 ------------TSAEAYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAY 130 (184)
T ss_dssp ------------CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHH
Confidence 589999999999987 78999999999999765 789999999999976 55999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 020091 256 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 303 (331)
Q Consensus 256 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~ 303 (331)
+++++. .++.+++++|.+|...|++++|+.+|++|++.++.++.++++
T Consensus 131 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~la 180 (184)
T 3vtx_A 131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA 180 (184)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence 999887 568999999999999999999999999999999888776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=162.87 Aligned_cols=249 Identities=13% Similarity=0.007 Sum_probs=143.0
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+..+...+..|++.+|...+...++..+ .++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++.+|.+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLA----MGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3444445566777777777666666543 357777777777777 677777777777776653 66677777777
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC--------------------------CccCHHHHHHHHHHHHHC--CCHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA--------------------------QPANAEEAVKLLYQASIA--GHVRAQYQL 198 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~A~~~~~~a~~~--~~~~a~~~l 198 (331)
|...|++++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 7777777777777777766654321 244555555555555432 344555555
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC---------------------------------
Q 020091 199 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--------------------------------- 243 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g--------------------------------- 243 (331)
|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .|
T Consensus 184 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 184 AECFIK----EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ-LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHH----TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 555543 44455555555544432 344444444444433 11
Q ss_pred ----------ccccHHHHHHHHHHHHHcC--C----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 020091 244 ----------LPLSHRQARKWMKRAADCG--H----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVI 305 (331)
Q Consensus 244 ----------~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~ 305 (331)
..+++++|+.+|++++... + ...+..+|.++...|++++|+.+|+++++..+ ..+..+++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 0235555555555555442 1 12455666666667777777777777666543 3344443333
Q ss_pred HhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 306 LQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 306 ~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+ ...++.++|...+++.++..|.
T Consensus 339 ~--~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 339 Y--LIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp H--HHTTCHHHHHHHHHHHHTTSSS
T ss_pred H--HHhcCHHHHHHHHHHHHHhCcc
Confidence 3 4455666777777776666665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-19 Score=156.96 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=195.4
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (331)
...+..|++++|...+.+.++..+ .++.+++.+|.++.. .+ ++++|+.+|++++... ++.++..+|.++..
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGCYYLM----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHH----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 344677899999999998888755 478999999999999 88 9999999999999875 78999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 150 MDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
.|++++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 213 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAE 213 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHH
Confidence 9999999999999999987765 789999999999999875 689999999999987 78999999
Q ss_pred HHHHHHHH-----------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHH
Q 020091 217 RWYLRAAE-----------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 217 ~~~~~A~~-----------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A 283 (331)
.+|+++++ .....++..+|.+|.. .+++++|+.+|++++.. .+..++..+|.++...|++++|
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 99999987 3456899999999976 45999999999999876 5678999999999999999999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHh
Q 020091 284 VVYLELATRAG--ETAADHVKNVILQ 307 (331)
Q Consensus 284 ~~~~~~A~~~~--~~~a~~~l~~~~~ 307 (331)
+.+|+++++.. +..+...++..+.
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99999998875 5677777777663
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=150.18 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=187.6
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C-------HH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S-------TL 138 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~-------~~ 138 (331)
....+...+..|++++|...+...++.. .++.+++.+|.+|.. .+++++|+.+|+++++.. + +.
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYE----KGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3455556778899999999999888876 578999999999999 899999999999999764 2 78
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA---QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
+++.+|.++...|++++|+.+|++++...+... ..+++++|+.++++++.. .++.+++.+|.+|.. .++++
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWP 156 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHH
Confidence 999999999999999999999999999865432 678899999999999876 467889999999987 78999
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.+|.++...|++++|+.+|++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999875 678999999999976 45999999999999877 5678999999999999999999999999
Q ss_pred HHHcC
Q 020091 290 ATRAG 294 (331)
Q Consensus 290 A~~~~ 294 (331)
+++..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99876
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=161.63 Aligned_cols=230 Identities=16% Similarity=0.068 Sum_probs=162.2
Q ss_pred HHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHH
Q 020091 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAM 140 (331)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~ 140 (331)
......+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++++... ++ .++
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 134 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQRGHLLLK----QGKLDEAEDDFKKVLKSNPSENEEKEAQ 134 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 33444555567789999999888888887554 68899999999998 899999999999998765 33 443
Q ss_pred H------------HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------------------------------------
Q 020091 141 V------------DAGLMYWEMDKKEAAISLYRQAAVLGDPAA------------------------------------- 171 (331)
Q Consensus 141 ~------------~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------------- 171 (331)
. .+|.++...|++++|+.+|++++...+...
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3 335667777788888888887777665443
Q ss_pred --------CccCHHHHHHHHHHHHHC--CCHHHHHHH------------HHHHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 020091 172 --------QPANAEEAVKLLYQASIA--GHVRAQYQL------------ALCLHRGRGVDFNLQEAARWYLRAAEG--GY 227 (331)
Q Consensus 172 --------~~~~~~~A~~~~~~a~~~--~~~~a~~~l------------g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~ 227 (331)
..+++++|+.+|++++.. +++..+..+ |.++.. .+++++|+.+|+++++. ++
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcc
Confidence 344555555555554432 334443333 444444 45566666666666543 22
Q ss_pred ----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHH
Q 020091 228 ----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAAD 299 (331)
Q Consensus 228 ----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~ 299 (331)
...+..+|.+|.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++.. +..+.
T Consensus 291 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 3367778888865 45999999999999876 568999999999999999999999999999875 45666
Q ss_pred HHHHHHHhhh
Q 020091 300 HVKNVILQQL 309 (331)
Q Consensus 300 ~~l~~~~~~l 309 (331)
..++.+...+
T Consensus 367 ~~l~~~~~~~ 376 (450)
T 2y4t_A 367 EGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666554433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=166.62 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=208.4
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (331)
.....+......|++++|..++.+..+..++ +..++..++.+|.. .+++++|+..|++++.. .++.+++.+|
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 380 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLAVG 380 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 3344555567788999998888888776554 66778888888888 89999999999988765 4788999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d 211 (331)
.+|...|++++|+.+|+++++..+... ..+++++|+.+|+++++. +++.+++.+|.+|.. .++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 456 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGN 456 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCC
Confidence 999999999999999999998876654 789999999999998875 578899999999987 789
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc------CC---HHHHHHHHHHHhccCCH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GH---GKAQLEHGLGLFTEGEM 280 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~---~~a~~~Lg~~~~~~~~~ 280 (331)
+++|+++|+++++. .++.++..+|.+|.. .+++++|+.+|+++.+. .. ..++..+|.+|...|++
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 99999999999774 678999999999976 45999999999999875 21 56889999999999999
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 281 MKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 281 ~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
++|+.+|+++++.++ ..+...++.++ ...++.++|.+.+++.++..|.+
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVY--LHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCC
Confidence 999999999998765 45555555554 55678899999999999888864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-19 Score=152.33 Aligned_cols=225 Identities=10% Similarity=-0.014 Sum_probs=174.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVD 142 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~ 142 (331)
.+..+...+..|++++|+..+...++..++ ++.+++.+|.+|.. .+++++|+.+|++++... .+.+++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYE----LAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--CSTTHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 456667778999999999999988887654 67789999999999 899999999999999853 3556899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHH-HHHhcCCCC
Q 020091 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLA-LCLHRGRGV 208 (331)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg-~~y~~G~g~ 208 (331)
+|.++...|++++|+.+|+++++..+... ..+++++|+.+|+++++ +.++.+++++| .+|..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---- 155 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN---- 155 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH----
Confidence 99999999999999999999999987665 67888888888888765 36788888888 77764
Q ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC----C------HHHHHHHHHHHhc
Q 020091 209 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----H------GKAQLEHGLGLFT 276 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------~~a~~~Lg~~~~~ 276 (331)
+++++|+.+|+++++. .+..+++.+|.++..- |...++++|+.+|+++++.. + ..++..||.+|..
T Consensus 156 -~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 156 -KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp -TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 3788888888888764 5677888888887542 21223677888888877652 2 2566778888888
Q ss_pred cCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 020091 277 EGEMMKAVVYLELATRAGE--TAADHVKNV 304 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~--~~a~~~l~~ 304 (331)
.|++++|+.+|+++++..+ ..+...+..
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 8888888888888877644 444444333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=165.09 Aligned_cols=249 Identities=10% Similarity=-0.042 Sum_probs=196.3
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
..+..+...+..|++.+|+..+.+.++..+ ++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 345666677889999999999998888764 68999999999999 899999999999998774 889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------------------------------------------
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA----------------------------------------------------- 171 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------------------------- 171 (331)
.+|...|++++|+..|++++..++...
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999999988775220
Q ss_pred ----------------------------------------CccCHHHHHHHHHHHHH----------------CCCHHHH
Q 020091 172 ----------------------------------------QPANAEEAVKLLYQASI----------------AGHVRAQ 195 (331)
Q Consensus 172 ----------------------------------------~~~~~~~A~~~~~~a~~----------------~~~~~a~ 195 (331)
..+++++|+.+|+++++ ..++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 16889999999999988 4567889
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL 272 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 272 (331)
+.+|.+|.. .+++++|+.+|+++++.+. ..++..+|.+|.. .+++++|+.+|++++.. .+..++..+|.
T Consensus 241 ~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 241 EHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD----RNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH----CCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 999999987 7899999999999987522 7788888888865 33777788888887765 45677777787
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 273 GLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 273 ~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++...|++++|+.+|+++++..+.........+......++.++|...+++..+..|.
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 7777788888888888777765443333333444445566777777777776655553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-19 Score=162.36 Aligned_cols=222 Identities=6% Similarity=-0.081 Sum_probs=182.2
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN-LDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~-~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
.....|++++|+..+.+.++..++ ++.+++.+|.++.. .++ +++|+.+|++++..+ ++.+++++|.++...
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~----~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHH----cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 345568888998888888887654 78889999999888 775 999999999988774 888999999999888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH
Q 020091 151 DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV 228 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~ 228 (331)
|++++|+.+|++++.+++ +++.+++++|.++.. .+++++|+.+|+++++. ++.
T Consensus 180 g~~~eAl~~~~kal~ldP---------------------~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp TCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCH
T ss_pred cCHHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCH
Confidence 999999999988888876 689999999999987 77899999999999875 789
Q ss_pred HHHHHHHHHHhcCCCccccHHHH-----HHHHHHHHHc--CCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHc--CCHH
Q 020091 229 RAMYNTSLCYSFGEGLPLSHRQA-----RKWMKRAADC--GHGKAQLEHGLGLFTEG--EMMKAVVYLELATRA--GETA 297 (331)
Q Consensus 229 ~a~~~lg~~y~~g~g~~~~~~~A-----~~~~~~a~~~--~~~~a~~~Lg~~~~~~~--~~~~A~~~~~~A~~~--~~~~ 297 (331)
.+++++|.+|..-.| ..++| +.+|++|+.. ++..+++++|.++...| ++++|+.+++++ +. ++..
T Consensus 235 ~a~~~lg~~l~~l~~---~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~ 310 (382)
T 2h6f_A 235 SVWNQRYFVISNTTG---YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHTTC---SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH
T ss_pred HHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH
Confidence 999999999977333 22444 6999999877 67889999999999888 799999999887 44 4567
Q ss_pred HHHHHHHHHhhhch------h-cHHHHHHHHHhh-hcCCCC
Q 020091 298 ADHVKNVILQQLSA------T-SRDRAMLVVDSW-RAMPSL 330 (331)
Q Consensus 298 a~~~l~~~~~~l~~------~-~~~~a~~~~~~~-~~~~~~ 330 (331)
+...++.++..+.. + ..++|..+++++ .+..|.
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 77788888876631 2 358899999998 677764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=163.89 Aligned_cols=217 Identities=12% Similarity=-0.008 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
++..++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.+|...|++++|+.+|++++...+...
T Consensus 64 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK----EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 44569999999999 89999999999999986 4899999999999999999999999999999977655
Q ss_pred -----CccCHHHHHHHHHHHHHCC--CH----------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C--CHHH
Q 020091 172 -----QPANAEEAVKLLYQASIAG--HV----------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G--YVRA 230 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~~--~~----------~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~--~~~a 230 (331)
..+++++|+.+|+++++.. ++ .....+|.+|.. .+++++|+.+|+++++. . ++.+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 7899999999999998752 22 233445888876 78999999999999875 3 7899
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 020091 231 MYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVIL 306 (331)
Q Consensus 231 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~ 306 (331)
++++|.+|.. .+++++|+.+|++++.. .+..+++.+|.+|...|++++|+.+|+++++..+ ..+..+++.++
T Consensus 216 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 216 QTGLGVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999976 55999999999999887 5688999999999999999999999999998755 55555665555
Q ss_pred hhhchhcHHHHHHHHHhhhcCCCC
Q 020091 307 QQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 307 ~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
...++.++|...+++.++..|.
T Consensus 292 --~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 292 --INLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp --HHHTCCHHHHHHHHHHHHHHHC
T ss_pred --HHCCCHHHHHHHHHHHHHhCcc
Confidence 4557778999999998766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=162.15 Aligned_cols=239 Identities=13% Similarity=-0.019 Sum_probs=187.6
Q ss_pred CCchHHHhHH-HHHHHHHHhCCCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC
Q 020091 77 TLPQLRAASL-VCKSWNDALRPLR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (331)
Q Consensus 77 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (331)
-.+++.+|.. .+.+.++..++.. ++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.++...|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 3467777754 4443333333222 35678999999999 899999999999999874 8999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHCC--CHHHHH----------------HHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIAG--HVRAQY----------------QLALCL 202 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~----------------~lg~~y 202 (331)
++++|+.+|++++...+... ..+++++|+.+|+++++.. +..++. .+|.++
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999999999987665 7899999999999998753 333332 577777
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHC--C--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 020091 203 HRGRGVDFNLQEAARWYLRAAEG--G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 276 (331)
Q Consensus 203 ~~G~g~~~d~~~A~~~~~~A~~~--~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 276 (331)
. .+++++|+.+|+++++. . ++.++..+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++..
T Consensus 193 ~-----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 193 S-----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp H-----HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred h-----cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 3 57899999999999875 3 67899999999976 45999999999999876 567899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 277 EGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.|++++|+.+|+++++..+ ..+..+++.++ ...++.++|...+++.++..|.
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISC--INLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999998765 44555555554 5667888999999998765553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=172.88 Aligned_cols=164 Identities=14% Similarity=0.020 Sum_probs=152.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++.++++||.+|.. .|++++|+.+|++|++.. ++.++++||.+|...|++++|+.+|++|+++++
T Consensus 6 P~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------- 74 (723)
T 4gyw_A 6 PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP------- 74 (723)
T ss_dssp CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Confidence 4579999999999999 999999999999999874 999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+++.++++||.+|.. .+++++|+++|++|++. +++.++++||.+|.. .+++++|+.
T Consensus 75 --------------~~~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~ 132 (723)
T 4gyw_A 75 --------------TFADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIA 132 (723)
T ss_dssp --------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence 589999999999987 88999999999999875 789999999999976 459999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+|++|++. ++..++.+||.+|...|++++|...|+++++..
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 99999987 678999999999999999999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-18 Score=160.00 Aligned_cols=249 Identities=10% Similarity=-0.038 Sum_probs=164.0
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
.....+...+..|++++|+..+.+.++..+ .++.+++.+|.+|.. .+++++|+..|++++..+ ++.+++.+|
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345666677889999999999999988865 479999999999999 899999999999999864 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------------------------------------------
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAA----------------------------------------------------- 171 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------------------------- 171 (331)
.++...|++++|+..|+ ++...+...
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999885 553322211
Q ss_pred ----------------------------------CccCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHhcCCCC
Q 020091 172 ----------------------------------QPANAEEAVKLLYQASIA--GHV-------RAQYQLALCLHRGRGV 208 (331)
Q Consensus 172 ----------------------------------~~~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~y~~G~g~ 208 (331)
..+++++|+.+|+++++. +++ .+++.+|.++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~---- 255 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL---- 255 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----
Confidence 002566666666666543 332 245566666654
Q ss_pred CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHH
Q 020091 209 DFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
.+++++|+.+|+++++. ....+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 56677777777776654 225566666666643 33666666666666654 345666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 286 YLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 286 ~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+|+++++.++................++.++|...+++..+..|.
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666666654322222222223333445556666666665555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=157.49 Aligned_cols=198 Identities=6% Similarity=-0.079 Sum_probs=174.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCCCCCccC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK-KEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.++.+++.+|.++.. .+++++|+..|++++..+ ++.+++++|.++...|+ +++|+.+|++++.+++
T Consensus 95 ~~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P------- 163 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------- 163 (382)
T ss_dssp HHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-------
T ss_pred hhHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-------
Confidence 367889999999999 899999999999999875 99999999999999996 9999999999999877
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
.++.+++++|.+|.. .+++++|+.+|++|++. ++..+++++|.++.. .+++++|+.
T Consensus 164 --------------~~~~a~~~~g~~~~~----~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~ 221 (382)
T 2h6f_A 164 --------------KNYQVWHHRRVLVEW----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQ 221 (382)
T ss_dssp --------------TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHH
T ss_pred --------------CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHH
Confidence 589999999999987 78999999999999875 789999999999976 458999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhc-cCCHHHH-----HHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 254 WMKRAADC--GHGKAQLEHGLGLFT-EGEMMKA-----VVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 254 ~~~~a~~~--~~~~a~~~Lg~~~~~-~~~~~~A-----~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
+|+++++. .+..+++++|.++.. .|..++| +.+|++|++.. +..+..+++.++......+.+++.+.+++
T Consensus 222 ~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 222 YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 99999987 678999999999999 5555777 59999999874 57788888888887655577889998888
Q ss_pred hhcCCCC
Q 020091 324 WRAMPSL 330 (331)
Q Consensus 324 ~~~~~~~ 330 (331)
+ +..|.
T Consensus 302 ~-~~~p~ 307 (382)
T 2h6f_A 302 L-QPSHS 307 (382)
T ss_dssp H-TTTCC
T ss_pred h-ccCCC
Confidence 7 66654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=158.01 Aligned_cols=240 Identities=13% Similarity=-0.006 Sum_probs=201.1
Q ss_pred CCchHHHhHHHHHHHHH-----H--hCC-----CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHH
Q 020091 77 TLPQLRAASLVCKSWND-----A--LRP-----LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDA 143 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~-----~--~~~-----~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~l 143 (331)
..|++++|...+....+ . .++ ..++.+++.+|.+|.. .+++++|+.+|++++... .+.+++.+
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l 276 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYM 276 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHH
Confidence 38999999988888877 2 111 2357789999999999 899999999999998764 38889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCC
Q 020091 144 GLMYWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 210 (331)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~ 210 (331)
|.++...|++++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+|.+|.. .+
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 352 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR----EN 352 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT----TT
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH----cC
Confidence 9999999999999999999999877666 678999999999999875 578899999999986 78
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CC------HHHHHHHHHHHhc---c
Q 020091 211 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH------GKAQLEHGLGLFT---E 277 (331)
Q Consensus 211 d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~------~~a~~~Lg~~~~~---~ 277 (331)
++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++... .+ ..+++.+|.++.. .
T Consensus 353 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTD----KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999875 678899999999976 45999999999999875 33 3389999999999 9
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 278 GEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 278 ~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
|++++|+.+|+++++..+ ..+...++.++ ...++.++|...+++.++..|.
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMK--LQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHhccc
Confidence 999999999999998765 44445555444 5667888999999998887775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=138.82 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...|++++|+.+|++++...+
T Consensus 6 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------- 73 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMR----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-------- 73 (225)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------
Confidence 356777778888877 78888888888887765 3677788888888888888888888887777654
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHhcCCCccccHHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
.++.+++.+|.+|.. . +++++|+.+|+++++ . ++..+++.+|.+|.. .+++++|
T Consensus 74 -------------~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 132 (225)
T 2vq2_A 74 -------------DSAEINNNYGWFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLA 132 (225)
T ss_dssp -------------TCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHH
T ss_pred -------------CChHHHHHHHHHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHH
Confidence 366677777777765 6 677777777777776 2 235667777777755 3477777
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 252 RKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE---TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 252 ~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~---~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..+ ......+..+ ....++.+++...++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI--AKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHH
Confidence 7777777665 4466777777777777777777777777766533 3333333322 3344555667777777665
Q ss_pred CCCC
Q 020091 327 MPSL 330 (331)
Q Consensus 327 ~~~~ 330 (331)
..|.
T Consensus 211 ~~p~ 214 (225)
T 2vq2_A 211 NFPY 214 (225)
T ss_dssp HCTT
T ss_pred hCCC
Confidence 5554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-18 Score=159.55 Aligned_cols=197 Identities=16% Similarity=0.066 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNL-DKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~-~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
..++.+++.+|.+|.. .+++ ++|+.+|++|++.. ++.+++.||.+|...|++++|+.+|+++++..+
T Consensus 99 ~~~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p------ 168 (474)
T 4abn_A 99 QVEAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK------ 168 (474)
T ss_dssp CCCHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC------
T ss_pred chhHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------
Confidence 3589999999999999 8999 99999999999874 899999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCC----CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC-----C
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHR-GRGVD----FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG-----E 242 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~g~~----~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g-----~ 242 (331)
++.+++++|.+|.. +.+.. +++++|+.+|++|++. ++..+++++|.+|..- .
T Consensus 169 ----------------~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 169 ----------------NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp ----------------CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 37889999999987 11111 8999999999999875 7789999999999651 1
Q ss_pred CccccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHH
Q 020091 243 GLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRD 315 (331)
Q Consensus 243 g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~ 315 (331)
..+++++|+.+|++++.. .++.+++++|.+|...|++++|+.+|++|++.. +..+..+++.++..+. +.+
T Consensus 233 -~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg--~~~ 309 (474)
T 4abn_A 233 -NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS--RLT 309 (474)
T ss_dssp -CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHH
T ss_pred -ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHH
Confidence 115899999999999875 467899999999999999999999999999875 4566667776665553 445
Q ss_pred HHHHHHHh
Q 020091 316 RAMLVVDS 323 (331)
Q Consensus 316 ~a~~~~~~ 323 (331)
+|.+.+.+
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 66654443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-17 Score=148.63 Aligned_cols=219 Identities=14% Similarity=0.062 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
++.+++.+|.++.. .+++++|+.+|++++... ++.+++.+|.++...|++++|+.+|++++...+...
T Consensus 2 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLA----AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 47889999999999 899999999999998764 899999999999999999999999999999877655
Q ss_pred -----CccCHHHHHHHHHHHHHC-----CCHHHHHHH------------HHHHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 020091 172 -----QPANAEEAVKLLYQASIA-----GHVRAQYQL------------ALCLHRGRGVDFNLQEAARWYLRAAEG--GY 227 (331)
Q Consensus 172 -----~~~~~~~A~~~~~~a~~~-----~~~~a~~~l------------g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~ 227 (331)
..+++++|+.+|+++++. +++.++..+ |.++.. .+++++|+.+|+++++. ++
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCc
Confidence 789999999999999875 345666666 677776 78999999999999875 67
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHH-
Q 020091 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVK- 302 (331)
Q Consensus 228 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l- 302 (331)
+.++..+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++..+ ..+...+
T Consensus 154 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 154 AELRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 8999999999976 55999999999999987 5689999999999999999999999999998754 3333222
Q ss_pred ---------HHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 303 ---------NVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 303 ---------~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+......++.++|...+++..+..|.
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 2244456678889999999998876664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=143.07 Aligned_cols=194 Identities=12% Similarity=-0.031 Sum_probs=157.8
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (331)
+..+...+..|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 4455556778888999888888887754 368888889988888 88999999999988876 378888889999
Q ss_pred HhcCCCHHHHHHHHHHHHH--cCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAV--LGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+...|++++|+.+|++++. ..+ .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP---------------------ERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT---------------------THHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc---------------------ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 9888888888888888877 322 467888899998876 7889999999999876
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
. .+..++..+|.+|.. .+++++|..+|+++... .+..++..++.++...|++++|..+++++.+..+..
T Consensus 170 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 170 LNRNQPSVALEMADLLYK----EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred cCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 5 568888899998876 45899999999998876 467788888998999999999999999998876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-18 Score=143.07 Aligned_cols=201 Identities=17% Similarity=0.145 Sum_probs=161.1
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
..+..+...+..|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSS----VNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp -----------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 345555667788999999888877776544 479999999999999 899999999999998864 889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.++...|++++|+.+|++++...+ .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM---------------------ENGDLFYMLGTVLVK----LEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC---------------------CSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Confidence 999999999999999999998865 478899999999987 7899999999999987
Q ss_pred C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHH
Q 020091 225 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAA 298 (331)
Q Consensus 225 ~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a 298 (331)
. ++..++..+|.+|.. .+++++|+.+|+++... .+..++..+|.++...|++++|+.+|+++++..+ ..+
T Consensus 154 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 154 LNENDTEARFQFGMCLAN----EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp HCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred hCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 5 678999999999976 55999999999999877 5678899999999999999999999999998754 444
Q ss_pred HHHH
Q 020091 299 DHVK 302 (331)
Q Consensus 299 ~~~l 302 (331)
...+
T Consensus 230 ~~~~ 233 (243)
T 2q7f_A 230 LHAK 233 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=158.13 Aligned_cols=237 Identities=13% Similarity=0.001 Sum_probs=145.0
Q ss_pred hHHHhHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCH
Q 020091 80 QLRAASLVCKSWNDALRPLRE-----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~-----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~ 153 (331)
++.+|...+...++..++... +.+++.+|.++.. .+++++|+.+|++++... .+.+++.+|.++...|++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCH
Confidence 566666666665555443211 3356666777666 677777777777776653 456667777777777777
Q ss_pred HHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 154 EAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
++|+.+|++++...+... ..+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 368 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFN 368 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 777777777776655544 566777777777776553 456677777777765 566777777777
Q ss_pred HHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--C------HHHHHHHHHHHhcc----------CCH
Q 020091 221 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--H------GKAQLEHGLGLFTE----------GEM 280 (331)
Q Consensus 221 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~------~~a~~~Lg~~~~~~----------~~~ 280 (331)
++++. +++.++..+|.+|.. .+++++|+.+|++++... + ....+.+|.++... |++
T Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 369 ETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 77654 456666777777654 336777777777766542 1 12345556666666 777
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 281 MKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 281 ~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++|+.+|+++++..+ ..+..+++.++ ...++.++|...+++..+..|.
T Consensus 445 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 445 NAAIKLLTKACELDPRSEQAKIGLAQLK--LQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHhccHHHHHHHHHHHHHhCCC
Confidence 777777777766543 33444444443 3445566676667666655543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=159.30 Aligned_cols=237 Identities=14% Similarity=-0.035 Sum_probs=202.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (331)
..|++++|..++....+. ..++.+++.+|.+|.. .+++++|+.+|+++...+ +..++..++.++...|+.+
T Consensus 284 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFV----RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp THHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred CcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 568888997666544443 3589999999999999 899999999999998764 7888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+|+..|++++...+... ..+++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+++|++
T Consensus 357 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 99999999998766554 78999999999999876 4689999999999987 7899999999999
Q ss_pred HHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----
Q 020091 222 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---- 293 (331)
Q Consensus 222 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---- 293 (331)
+++. ++..++..+|.+|.. .+++++|..+|+++.+. .++.++..+|.+|...|++++|+.+|+++++.
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9876 578899999999976 55999999999999876 56889999999999999999999999999886
Q ss_pred --CC---HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 294 --GE---TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 294 --~~---~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+ ..+...++.+ ....++.++|...+++..+..|.
T Consensus 509 ~~~p~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHA--YRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp CCCSGGGHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHSSC
T ss_pred ccchhhHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHhCCC
Confidence 33 3344444444 45678889999999998877664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-17 Score=139.91 Aligned_cols=196 Identities=17% Similarity=0.113 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.++...|++++|+.+|++++...+
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS---------- 102 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----------
Confidence 6778999999999 899999999999998764 899999999999999999999999999999866
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
.++.+++.+|.+|.. .+++++|+.+|+++++ . ++..++..+|.+|.. .+++++|..+
T Consensus 103 -----------~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -----------RNARVLNNYGGFLYE----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEY 163 (252)
T ss_dssp -----------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHH----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 478899999999987 7899999999999987 3 467889999999976 4599999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
|+++... .+..+++.+|.++...|++++|+.+|+++++..+ ..+...++.++ ...++.++|...++++++..|.
T Consensus 164 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA--KVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHCCC
Confidence 9999886 4688999999999999999999999999998754 44455444444 4567889999999999888776
Q ss_pred C
Q 020091 331 H 331 (331)
Q Consensus 331 ~ 331 (331)
+
T Consensus 242 ~ 242 (252)
T 2ho1_A 242 S 242 (252)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-17 Score=141.83 Aligned_cols=210 Identities=12% Similarity=0.035 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-------C
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA-------A 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~ 171 (331)
.+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++...|++++|+.+|+++++..+.. .
T Consensus 4 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYK----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 46789999999999 89999999999999866 588999999999999999999999999999875532 1
Q ss_pred -----------CccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 020091 172 -----------QPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC 237 (331)
Q Consensus 172 -----------~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~ 237 (331)
..+++++|+.+|+++++.. .+. ++.. .+++++|+.+|++++.. .+..++..+|.+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTK----LRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHH----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 4566666666666665542 222 2222 23356666666666655 356788999999
Q ss_pred HhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHH
Q 020091 238 YSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRD 315 (331)
Q Consensus 238 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~ 315 (331)
|.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..+......+.........++.+
T Consensus 149 ~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 149 YFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHH----hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 976 45999999999999886 567889999999999999999999999999886544444444444445567888
Q ss_pred HHHHHHHhhhcCC
Q 020091 316 RAMLVVDSWRAMP 328 (331)
Q Consensus 316 ~a~~~~~~~~~~~ 328 (331)
+|...+++..+..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987766
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=152.18 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=162.7
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK 152 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~ 152 (331)
...+..|++.+++..+..+....++ ...++.+.++.+|.. .|+++.|+..++.. ......++..++..+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCc
Confidence 3445566676664433322221111 012355566666666 66777777666542 22234455666666666677
Q ss_pred HHHHHHHHHHHHHcC--CCCC-----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 020091 153 KEAAISLYRQAAVLG--DPAA-----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 219 (331)
Q Consensus 153 ~~~A~~~~~~a~~~~--~~~~-----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~ 219 (331)
.++|+..|++.+..+ +... ..+++++|+.+|++ .+++.++..+|.+|.. .+++++|+.+|
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~l 153 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 777777777766543 2222 56677777777766 5789999999999987 78899999999
Q ss_pred HHHHHCCCHHHHHHHH--HHHh-cCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 220 LRAAEGGYVRAMYNTS--LCYS-FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 220 ~~A~~~~~~~a~~~lg--~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+++++.........++ ++.. .+. +++++|+.+|+++++. .++.+++++|.++...|++++|...|+++++..
T Consensus 154 ~~~~~~~p~~~~~~l~~a~~~l~~~~---~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQDEDATLTQLATAWVSLAAGG---EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhCcCcHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998764333333333 2221 233 4899999999999876 567889999999999999999999999999875
Q ss_pred --CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 295 --ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 295 --~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+..+..+++.++..+.+. .+.+...++++++.+|.|
T Consensus 231 p~~~~~l~~l~~~~~~~g~~-~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKP-PEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCCC
Confidence 566667777666554332 234678889999999886
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=154.59 Aligned_cols=245 Identities=14% Similarity=0.038 Sum_probs=196.8
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--------C
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------G 135 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--------~ 135 (331)
.+..+...+..|++++|...+.+.++..++ ++ .+++.+|.+|.. .+++++|+.+|++++.. .
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHccCchH
Confidence 345556678889999999999999888554 44 589999999999 89999999999999865 2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccC-----------------HHHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPAN-----------------AEEAVK 181 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~-----------------~~~A~~ 181 (331)
.+.++..+|.+|...|++++|+.+|++++....... ..++ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 557889999999999999999999999987621111 5677 999999
Q ss_pred HHHHHHHC----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCcc
Q 020091 182 LLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP 245 (331)
Q Consensus 182 ~~~~a~~~----~----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~ 245 (331)
+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|.. .
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~ 276 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF----L 276 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----C
Confidence 99998653 2 35688999999987 78999999999999764 33 3478999999976 4
Q ss_pred ccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHhhh
Q 020091 246 LSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG----E----TAADHVKNVILQQL 309 (331)
Q Consensus 246 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~----~----~~a~~~l~~~~~~l 309 (331)
+++++|+.+|+++... ++ ..++..+|.++...|++++|+.+|+++++.. + ..+...++.++ .
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~ 354 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH--S 354 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--H
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH--H
Confidence 5999999999999865 22 4678899999999999999999999998752 2 22445555554 4
Q ss_pred chhcHHHHHHHHHhhhcCC
Q 020091 310 SATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~ 328 (331)
..++.++|...+++.++..
T Consensus 355 ~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 355 AIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 5678889999998876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=142.20 Aligned_cols=197 Identities=17% Similarity=0.166 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.++.. .+++++|+.+|++++... ++.+++.+|.++...|++++|+.+|++++...+
T Consensus 22 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------- 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS--------- 88 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------
Confidence 46778899999998 899999999999999864 899999999999999999999999999998865
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.+++.+|.+|.. .+++++|+.+|+++++. .+..++..+|.+|.. .+++++|+.+|
T Consensus 89 ------------~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~ 148 (243)
T 2q7f_A 89 ------------SAATAYYGAGNVYVV----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYL 148 (243)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHH
T ss_pred ------------cchHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHH
Confidence 478999999999987 78999999999999875 578999999999976 45999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 256 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 256 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
+++... .+..+++.+|.++...|++++|+.+|+++++..+ ..+...++.++ ...++.++|...+++.++..|.+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY--AYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHccCHHHHHHHHHHHHccCcch
Confidence 999877 5688999999999999999999999999998754 45555555555 55677789999999988877753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-17 Score=136.69 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
.++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.++...|++++|+.+|++++...+
T Consensus 5 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------- 73 (228)
T 4i17_A 5 TDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------- 73 (228)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------
T ss_pred cCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------
Confidence 356666677777766 66777777777766654 3556666677777777777777776666666654
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHhcCCCccc
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV-------RAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~-------~a~~~lg~~y~~g~g~~~ 246 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. ++. .+++.+|.++.. .+
T Consensus 74 --------------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~ 131 (228)
T 4i17_A 74 --------------NLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AG 131 (228)
T ss_dssp --------------SHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred --------------chHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hc
Confidence 355666666666655 55666666666666553 333 446666666644 33
Q ss_pred cHHHHHHHHHHHHHcCC----HHHHHHHHHHHhccCCH---------------------------HHHHHHHHHHHHcCC
Q 020091 247 SHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEM---------------------------MKAVVYLELATRAGE 295 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~---------------------------~~A~~~~~~A~~~~~ 295 (331)
++++|+.+|+++++..+ ..++++||.+|...|+. ++|+.+|+++++..+
T Consensus 132 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 132 NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 66666666666665533 25556666666655554 888888888887654
Q ss_pred --HHHHHHHHHH
Q 020091 296 --TAADHVKNVI 305 (331)
Q Consensus 296 --~~a~~~l~~~ 305 (331)
..+...+..+
T Consensus 212 ~~~~~~~~l~~i 223 (228)
T 4i17_A 212 NRTEIKQMQDQV 223 (228)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4444444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=151.72 Aligned_cols=248 Identities=14% Similarity=0.019 Sum_probs=197.4
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C---
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G--- 135 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~--- 135 (331)
....+..+...+..|++.+|...+.+.++..++... +.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhccccH
Confidence 344556666778899999999999998888554211 4689999999999 89999999999998765 2
Q ss_pred -CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccC--------------------HH
Q 020091 136 -STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPAN--------------------AE 177 (331)
Q Consensus 136 -~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~--------------------~~ 177 (331)
.+.++..+|.+|...|++++|+.+|+++++..+... ..++ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 356889999999999999999999999987633221 5666 99
Q ss_pred HHHHHHHHHHHC----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcC
Q 020091 178 EAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFG 241 (331)
Q Consensus 178 ~A~~~~~~a~~~----~----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g 241 (331)
+|+.+|+++++. + .+.++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|..
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 239 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF- 239 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-
Confidence 999999998653 2 35678999999987 78999999999999764 33 3478999999976
Q ss_pred CCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 020091 242 EGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GE----TAADHVKNVI 305 (331)
Q Consensus 242 ~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~l~~~ 305 (331)
.+++++|..+|+++... ++ ..++..+|.++...|++++|+.+|+++++. ++ ..+...++.+
T Consensus 240 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 240 ---LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 45999999999999864 22 467789999999999999999999999875 22 3344455555
Q ss_pred HhhhchhcHHHHHHHHHhhhc
Q 020091 306 LQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 306 ~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+ ...++.++|...+++.++
T Consensus 317 ~--~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 317 Y--TALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp H--HHHTCHHHHHHHHHHHHH
T ss_pred H--HHcCCHHHHHHHHHHHHH
Confidence 4 456778899988888654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=144.97 Aligned_cols=249 Identities=14% Similarity=0.025 Sum_probs=196.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----C
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----S 136 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~ 136 (331)
..+..+...+..|++++|...+.+.++..++... +.+++.+|.+|.. .+++++|+.+|+++... + .
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3445566677889999999999998887544211 5788999999999 89999999999998765 2 4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccC--------------------HHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPAN--------------------AEEA 179 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~--------------------~~~A 179 (331)
+.++..+|.++...|++++|+.+|+++++..+... ..++ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56789999999999999999999999987633222 4566 9999
Q ss_pred HHHHHHHHHC----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCC
Q 020091 180 VKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEG 243 (331)
Q Consensus 180 ~~~~~~a~~~----~----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g 243 (331)
+.+++++++. + .+.++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|..
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--- 235 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--- 235 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---
Confidence 9999998653 2 35578899999987 78999999999999764 33 3478899999976
Q ss_pred ccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHh
Q 020091 244 LPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GE----TAADHVKNVILQ 307 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~l~~~~~ 307 (331)
.+++++|..+|+++... ++ ..++..+|.++...|++++|+.+|+++++. ++ ..+...++.++
T Consensus 236 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~- 313 (338)
T 3ro2_A 236 -LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY- 313 (338)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred -cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-
Confidence 55999999999999764 22 567789999999999999999999999875 32 22444555544
Q ss_pred hhchhcHHHHHHHHHhhhcCCC
Q 020091 308 QLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 308 ~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
...++.++|...+++..+..+
T Consensus 314 -~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 314 -TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp -HHHTCHHHHHHHHHHHHHC--
T ss_pred -HHcCChHHHHHHHHHHHHHHH
Confidence 456788999999999876654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-17 Score=133.45 Aligned_cols=164 Identities=16% Similarity=0.010 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++..+++||.+|...|++++|+.+|+++++.+| +++.+++++|.+|.. .+++++|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~----~~~~~~a 58 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP---------------------NNVETLLKLGKTYMD----IGLPNDA 58 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----CCCHHHH
Confidence 678899999999999999999999999999877 589999999999987 7899999
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
+.++.++... .+..++..+|.++.. ..+++.|..++.++... .+..++..+|.+|...|++++|+.+|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 59 IESLKKFVVLDTTSAEAYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 9999999765 678999999999976 55999999999999876 568899999999999999999999999999
Q ss_pred HcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 292 RAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 292 ~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
+.++ ..+..+++.++ ...++.++|...+++.++..|.
T Consensus 135 ~~~p~~~~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 135 SIKPGFIRAYQSIGLAY--EGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHTTHH
T ss_pred HhcchhhhHHHHHHHHH--HHCCCHHHHHHHHHHHHhCCcc
Confidence 9865 55555655555 5567889999999999888774
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-17 Score=143.98 Aligned_cols=216 Identities=15% Similarity=-0.001 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 171 (331)
+..++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++...|++++|+.+|++++...+...
T Consensus 21 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLK----LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 4567889999999 89999999999999876 4899999999999999999999999999999977655
Q ss_pred ----CccCHHHHHHHHHHHHHC--CCHHHHHHH--------------HH-HHhcCCCCCCCHHHHHHHHHHHHHC--CCH
Q 020091 172 ----QPANAEEAVKLLYQASIA--GHVRAQYQL--------------AL-CLHRGRGVDFNLQEAARWYLRAAEG--GYV 228 (331)
Q Consensus 172 ----~~~~~~~A~~~~~~a~~~--~~~~a~~~l--------------g~-~y~~G~g~~~d~~~A~~~~~~A~~~--~~~ 228 (331)
..+++++|+.+|+++++. .+...+..+ |. ++.. .+++++|+.+|+++++. .+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCH
Confidence 788999999999999875 344444444 44 3443 67899999999999875 578
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 020091 229 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNV 304 (331)
Q Consensus 229 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~ 304 (331)
.++..+|.+|.. .+++++|+.+|+++... .+..++..+|.++...|++++|+.+|+++++..+ ..+..+++.
T Consensus 173 ~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 173 QLHASLGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999976 45999999999999876 4678899999999999999999999999998765 455555555
Q ss_pred HHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 305 ILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 305 ~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
++ ...++.++|...+++..+..|.
T Consensus 249 ~~--~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 249 SY--SNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HH--HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HH--HHhccHHHHHHHHHHHHHhCCc
Confidence 54 5667889999999998766654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-16 Score=148.96 Aligned_cols=204 Identities=12% Similarity=-0.058 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
...+..+..||.+|.. .|++++|+++|++|++. ....++.++|.+|...|++++|+.+|++++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp --CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3456778899999999 89999999999999864 24667899999999999999999999999875
Q ss_pred CCCCC---------------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHH
Q 020091 167 GDPAA---------------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR-GRGVDFNLQEAARWYLRA 222 (331)
Q Consensus 167 ~~~~~---------------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~-G~g~~~d~~~A~~~~~~A 222 (331)
..... ..+++++|+.+|+++++ +++++++..+|.++.. | ..++.++|++.|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~--~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD--NWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH--HSCCCCCTHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence 22111 34679999999999976 5789999999987643 1 145678899999999
Q ss_pred HHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CH
Q 020091 223 AEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ET 296 (331)
Q Consensus 223 ~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~ 296 (331)
++. ++..++.++|..+..-....+++++|..+|+++... .+..++.++|.+|...|++++|+.+|++|++.. +.
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 875 678889999988755333456889999999999876 568899999999999999999999999999875 45
Q ss_pred HHHHHHHHHHh
Q 020091 297 AADHVKNVILQ 307 (331)
Q Consensus 297 ~a~~~l~~~~~ 307 (331)
.+..+++.++.
T Consensus 282 ~~~~~lg~~y~ 292 (472)
T 4g1t_A 282 YLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=150.30 Aligned_cols=248 Identities=13% Similarity=-0.006 Sum_probs=179.9
Q ss_pred hccCCchHHHhHHHHHHHHHHh-------CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----------CC
Q 020091 74 ASFTLPQLRAASLVCKSWNDAL-------RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GS 136 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~ 136 (331)
..+..|++++|+..+.+.++.. .+...+.++.++|.+|.. .+++++|+.+|+++... ..
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 3456799999988887766542 234457788999999999 89999999999998753 36
Q ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCCCC-------------------------------------------
Q 020091 137 TLAMVDAGLMYWE--MDKKEAAISLYRQAAVLGDPAA------------------------------------------- 171 (331)
Q Consensus 137 ~~a~~~lg~~~~~--~~~~~~A~~~~~~a~~~~~~~~------------------------------------------- 171 (331)
+.++.++|..+.. .+++++|+.+|++++++.|...
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l 215 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 7788888876654 4689999999999998876654
Q ss_pred ---------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 172 ---------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 172 ---------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
..+++++|+.+|++++. +.++.++.++|.+|.. .+++++|+.+|++|++. +++.+++++|.+|
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 23455667777777654 3567777788887776 67788888888888664 5677788888887
Q ss_pred hcCC-----------C----ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH---
Q 020091 239 SFGE-----------G----LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA--- 298 (331)
Q Consensus 239 ~~g~-----------g----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a--- 298 (331)
.... + ....+++|+.+|+++... .+..+++.+|.+|...|++++|+.+|+++++......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 5310 0 113456778888887765 4466788899999999999999999999998754322
Q ss_pred --HHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 299 --DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 299 --~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
...++.+. ....++.++|+..+++.++..|.
T Consensus 372 ~~~~~~~~~~-~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 372 LLHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHHHHHH-HHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcc
Confidence 23333332 34567788999999998888775
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-16 Score=135.30 Aligned_cols=230 Identities=13% Similarity=0.000 Sum_probs=171.6
Q ss_pred cCCchHHHhHHHHHHHHHHhCC--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC
Q 020091 76 FTLPQLRAASLVCKSWNDALRP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (331)
...+++++|+..+...++..+. ..++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.+|...|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 3457889998888777765321 2367899999999999 899999999999999874 8999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
++++|+.+|++++...+... ..+++++|+.+|+++++. +++.....++.++. .+++++|+.+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~ 166 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAKEV 166 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHHHH
Confidence 99999999999999887665 788899999999998764 56666666665554 4679999999
Q ss_pred HHHHHHCC-CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 020091 219 YLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLELAT 291 (331)
Q Consensus 219 ~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~~A~ 291 (331)
|++++... .....+.++.++.. . .+.++|+..+++++.... ..+++.+|.+|...|++++|+.+|++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWNIVEFYLG-N---ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCCSTHHHHHHHHTT-S---SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHH-h---cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98887652 22223345555533 2 366889999998876533 5778899999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhchhcHHHHHHHH
Q 020091 292 RAGETAADHVKNVILQQLSATSRDRAMLVV 321 (331)
Q Consensus 292 ~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~ 321 (331)
+.++.... ..+..+ ...++.+++++.+
T Consensus 243 ~~~p~~~~-~~~~~~--~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFV-EHRYAL--LELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCH-HHHHHH--HHHHHHHHC----
T ss_pred hCCchhHH-HHHHHH--HHHHHHHhhHHHH
Confidence 88764422 222222 3344555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=161.11 Aligned_cols=161 Identities=18% Similarity=0.058 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHH
Q 020091 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 214 (331)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~ 214 (331)
++++++++||.+|...|++++|+.+|++|+++.+ +++.++++||.+|.. .+++++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P---------------------~~~~a~~nLg~~l~~----~g~~~e 61 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP---------------------EFAAAHSNLASVLQQ----QGKLQE 61 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------------CCHHHHHHHHHHHHH----TTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----cCCHHH
Confidence 3678999999999999999999999999999876 689999999999987 889999
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 215 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 215 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
|+.+|++|++. +++.++++||.+|.. .+++++|+.+|++|++. ++..++++||.+|...|++++|+.+|++|
T Consensus 62 A~~~~~~Al~l~P~~~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 62 ALMHYKEAIRISPTFADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875 789999999999976 55999999999999987 67899999999999999999999999999
Q ss_pred HHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 291 TRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 291 ~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
++.+ +..+..+++.++..+ ++.++|.+.++++++
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~--g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIV--CDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHT--TCCTTHHHHHHHHHH
T ss_pred HHhCCCChHHHhhhhhHHHhc--ccHHHHHHHHHHHHH
Confidence 9875 567777777777655 444566666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=136.37 Aligned_cols=197 Identities=12% Similarity=0.036 Sum_probs=157.9
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (331)
..+...+..|++++|+..+...++...+.. .+.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 117 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK----KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344456778999999988888887322211 35679999999999 89999999999999986 488999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
|...|++++|+.+|+++++..+... ...++++|+.+|+++++. .++.+++.+|.++..- +...+++
T Consensus 118 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~ 196 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQG 196 (272)
T ss_dssp HHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSC
T ss_pred HHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhH
Confidence 9999999999999999999866554 456999999999999874 6789999999999761 1123388
Q ss_pred HHHHHHHHHHHC----CC------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 020091 214 EAARWYLRAAEG----GY------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 275 (331)
Q Consensus 214 ~A~~~~~~A~~~----~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 275 (331)
+|+.+|+++++. ++ ..++..+|.+|.. .+++++|+.+|+++++. +++.+.-.++.+..
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 999999999875 22 3688899999976 45999999999999877 56778777776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=148.96 Aligned_cols=194 Identities=12% Similarity=0.023 Sum_probs=167.8
Q ss_pred hHHHHHHHHhccCCchH-HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQL-RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVD 142 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~ 142 (331)
+...+..+...+..|++ ++|+..+.+.++..+ .++.+++.||.+|.. .+++++|+.+|+++++.. ++.++.+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 175 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWK----KGDVTSAHTCFSGALTHCKNKVSLQN 175 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 33445566667888999 999999999888865 479999999999999 899999999999999885 6899999
Q ss_pred HHHHHhcC---------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCC
Q 020091 143 AGLMYWEM---------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-----GRGV 208 (331)
Q Consensus 143 lg~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-----G~g~ 208 (331)
||.+|... |++++|+.+|++++++.+ +++.++++||.+|.. |. .
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~lg~~~~~~~~~~~~-~ 233 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV---------------------LDGRSWYILGNAYLSLYFNTGQ-N 233 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHhhcc-c
Confidence 99999999 899999999999988866 589999999999975 10 1
Q ss_pred CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHH
Q 020091 209 DFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 281 (331)
Q Consensus 209 ~~d~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~ 281 (331)
.+++++|+.+|++|++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.++...|+++
T Consensus 234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 17899999999999874 679999999999976 45999999999999876 57889999999999999999
Q ss_pred HHHHHHHHH
Q 020091 282 KAVVYLELA 290 (331)
Q Consensus 282 ~A~~~~~~A 290 (331)
+|+..+.+.
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 999877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-16 Score=143.40 Aligned_cols=193 Identities=12% Similarity=0.070 Sum_probs=113.0
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C-----CH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----ST 137 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~ 137 (331)
.+...+..|++++|...+.+.++.....+ .+.+++.+|.+|.. .+++++|+.+|++|++. + .+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 44556677888888877777766543333 35688888988888 88999999999988764 2 24
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.++.++|.+|...|++++|+.+|+++++..+... + ....+.++++||.+|.. .+++++|+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~------------~~~~~~~~~~lg~~y~~----~g~~~~A~~ 245 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---Q------------PQLMGRTLYNIGLCKNS----QSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---C------------HHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---C------------hHHHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 5778889999888899999888888886522111 0 00012344455555544 445555555
Q ss_pred HHHHHHH--------CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCHH---HHHHHHHHHhccCC---
Q 020091 218 WYLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGK---AQLEHGLGLFTEGE--- 279 (331)
Q Consensus 218 ~~~~A~~--------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~---a~~~Lg~~~~~~~~--- 279 (331)
+|++|++ .+...+++++|.+|.. .+++++|..+|+++... +++. ....||.++...|+
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 5555544 1223445555555543 22555555555555432 1211 12335555555554
Q ss_pred HHHHHHHHHHH
Q 020091 280 MMKAVVYLELA 290 (331)
Q Consensus 280 ~~~A~~~~~~A 290 (331)
+++|+.+++++
T Consensus 322 ~~~al~~~~~~ 332 (383)
T 3ulq_A 322 IQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 44444444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-15 Score=123.09 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=167.2
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
...+...+..|++++|...+...++..+ .++.+++.+|.+|.. .+++++|+.+|++++... ++.++..+|.+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQY----LKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4445556778999999999988888765 468999999999999 899999999999998764 88999999999
Q ss_pred HhcC-CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 147 YWEM-DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 147 ~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+... |++++|+.+|++++..+.. .+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTY-------------------PTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTC-------------------SCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCC-------------------cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 9999 9999999999999982110 1457889999999987 78999999999999875
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
++..++..+|.+|.. .+++++|..+|+++... .+..++..++.++...|+.++|..+++.+.+..+.
T Consensus 143 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 143 QPQFPPAFKELARTKML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp STTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 678999999999976 55999999999999875 56778888888899999999999999999876543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=128.57 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
..++.+++++|.++...|++++|+.+|+++++..++ .+..+++++|.+|.. .++++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~~----~~~~~ 59 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------------------QDSVTAYNCGVCADN----IKKYK 59 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------------------CCHHHHHHHHHHHHH----TTCHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------------------CCcHHHHHHHHHHHH----hhcHH
Confidence 347899999999999999999999999999998752 377899999999987 88999
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHhccCCHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG-------KAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~-------~a~~~Lg~~~~~~~~~~~ 282 (331)
+|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+|++++... ++ .+++.+|.++...|++++
T Consensus 60 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 60 EAADYFDIAIKKNYNLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 999999999986 568899999999976 459999999999999874 44 568999999999999999
Q ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHhhhchhcH---------------------------HHHHHHHHhhhcCCCCC
Q 020091 283 AVVYLELATRAGET----AADHVKNVILQQLSATSR---------------------------DRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 283 A~~~~~~A~~~~~~----~a~~~l~~~~~~l~~~~~---------------------------~~a~~~~~~~~~~~~~~ 331 (331)
|+.+|+++++.++. .+..+++.++. ..++. ++|...+++.++..|.+
T Consensus 136 A~~~~~~al~~~p~~~~~~~~~~l~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 136 AEENYKHATDVTSKKWKTDALYSLGVLFY--NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHH--HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999998877 44555555543 34444 78899999988888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-15 Score=132.45 Aligned_cols=191 Identities=16% Similarity=0.122 Sum_probs=149.8
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 108 GKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 108 G~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
|.+|.. .+++++|+.+|++|++. |+ +.++.++|.+|...|++++|+.+|++|+.+.+
T Consensus 44 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~----------- 108 (292)
T 1qqe_A 44 ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT----------- 108 (292)
T ss_dssp HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------
Confidence 677877 89999999999999875 43 56889999999999999999999999987632
Q ss_pred HHHHHHHHHCCC----HHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccc
Q 020091 180 VKLLYQASIAGH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 180 ~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~ 246 (331)
+.|+ +.++.++|.+|.. . +++++|+.+|++|++. ++ ..++.++|.+|.. .+
T Consensus 109 --------~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g 172 (292)
T 1qqe_A 109 --------HRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DG 172 (292)
T ss_dssp --------HTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TT
T ss_pred --------HcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hC
Confidence 1233 4578899999986 5 8899999999999874 22 4568899999976 45
Q ss_pred cHHHHHHHHHHHHHcC--CH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHHhhhc
Q 020091 247 SHRQARKWMKRAADCG--HG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-------DHVKNVILQQLS 310 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~--~~-------~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a-------~~~l~~~~~~l~ 310 (331)
++++|+.+|++++... +. .+++++|.++...|++++|+.+|+++++..+... ...+...+....
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999999863 22 2678999999999999999999999987654322 223344444456
Q ss_pred hhcHHHHHHHHHhhhcCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~ 329 (331)
.++.+++...++++....|
T Consensus 253 ~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHhccCCccHH
Confidence 6778899999888876655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-16 Score=129.53 Aligned_cols=166 Identities=14% Similarity=0.008 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH----------------HHHHHhcCCCHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD----------------AGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~----------------lg~~~~~~~~~~~A~~~~~ 161 (331)
.+..++..|..+.. .+++++|+.+|++++... ++.+++. +|.+|...|++++|+.+|+
T Consensus 3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46778888999988 899999999999999875 7788888 9999999999999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
++++.+| +++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.
T Consensus 79 ~al~~~p---------------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 79 ELLQKAP---------------------NNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHCT---------------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHCC---------------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999877 589999999999987 78999999999999875 78999999999985
Q ss_pred cCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGH-GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.. | ......+...|+++....+ ..+++.+|.++...|++++|+.+|++|++..+.
T Consensus 134 ~~-~-~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LT-A-EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HH-H-HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HH-h-HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 31 1 2355677778887765433 246788999999999999999999999998764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-15 Score=137.87 Aligned_cols=165 Identities=16% Similarity=0.099 Sum_probs=136.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
.++.+|.++.. .+++++|+.+|++|... + .+.+++++|.+|...|++++|+.+|.+|++......
T Consensus 105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--- 177 (383)
T 3ulq_A 105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--- 177 (383)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc---
Confidence 34559999999 89999999999999875 3 456889999999999999999999999987632110
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccc
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~ 246 (331)
++ ..+.+.+++++|.+|.. .+++++|+.+|++|++. ++ ..+++++|.+|.. .+
T Consensus 178 ~~-----------~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g 238 (383)
T 3ulq_A 178 AY-----------NIRLLQCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QS 238 (383)
T ss_dssp TT-----------HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TT
T ss_pred cc-----------hHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CC
Confidence 00 01235688999999987 88999999999999853 43 4688999999976 55
Q ss_pred cHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 247 SHRQARKWMKRAADC--------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++++|+.+|+++++. ....++++||.+|...|++++|+.+|++|++.
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999882 23577899999999999999999999999875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-14 Score=127.26 Aligned_cols=217 Identities=10% Similarity=-0.036 Sum_probs=147.8
Q ss_pred HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC---CCCCCH-------HHHHHHHHHHHh-C--CCHHHHHHHHHHHh
Q 020091 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR---GVRKNL-------DKALDSFLKGAA-R--GSTLAMVDAGLMYW 148 (331)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~---g~~~~~-------~~A~~~~~~A~~-~--~~~~a~~~lg~~~~ 148 (331)
..|..++.+.++..+ .++.+++.+|.++..-. ...+++ ++|+..|++|+. . +++.++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 567777788887765 48999999999886300 003564 899999999998 4 48889999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-
Q 020091 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR-AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG- 226 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~- 226 (331)
..|++++|+..|++++...+. ++. ++.++|.++.. .+++++|+..|++|++.+
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~---------------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI---------------------DPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS---------------------CTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTT
T ss_pred hcCCHHHHHHHHHHHHhcccc---------------------CccHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC
Confidence 999999999999999998663 443 67777777665 566777777777777653
Q ss_pred -CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---C---CHH
Q 020091 227 -YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---G---ETA 297 (331)
Q Consensus 227 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---~---~~~ 297 (331)
....+...+.+..... +++++|+..|++++.. .++..+..+|.++...|++++|...|++++.. . ...
T Consensus 166 ~~~~~~~~~a~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCS---KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp CCTHHHHHHHHHHHHTS---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3344444444322212 3777777777777654 45667777777777777777777777777774 2 122
Q ss_pred HHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 298 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 298 a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
....+..+. ...++.+++..++++..+..|.
T Consensus 243 l~~~~~~~~--~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 243 IWARFLAFE--SNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHH--HHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHHHccc
Confidence 333333332 3345666777777776666554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-15 Score=137.27 Aligned_cols=213 Identities=9% Similarity=0.022 Sum_probs=139.4
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C-----CH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----ST 137 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~ 137 (331)
.+...+..|++.+|...+.+.++.....+ .+.+++.+|.+|.. .+++++|+.+|++|++. + .+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----MKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 33445677889999887777766554433 36688899999988 89999999999998864 2 24
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----------------CccCHHHHHHHHHHHHH-----C--CCHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-----------------QPANAEEAVKLLYQASI-----A--GHVR 193 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~~~A~~~~~~a~~-----~--~~~~ 193 (331)
.++.++|.+|...|++++|+.+|+++++...... ..+++++|+.+|+++++ . ..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 5778899999999999999999999887522111 45667777777777665 2 2356
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC---HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-CCHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK 265 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~ 265 (331)
+++++|.+|.. .+++++|+.+|+++++. ++ ......++.+|.. .+-...+.+|+.++++.... ....
T Consensus 263 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~-~~~~~~~~~al~~~~~~~~~~~~~~ 337 (378)
T 3q15_A 263 VLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE-TVDERKIHDLLSYFEKKNLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhCCChhHHHH
Confidence 66677777765 56677777777777653 11 2334455555532 22112366666666652111 1234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
....||.+|...|++++|..+|+++++
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455677777777777777777777665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=138.55 Aligned_cols=213 Identities=15% Similarity=0.085 Sum_probs=172.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-- 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-- 171 (331)
.+..++.+|..+.. .+++++|+.+|+++++.+ ++ .+++.+|.+|...|++++|+.+|++++.......
T Consensus 47 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 47 MCLELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 35667789999999 899999999999999874 44 5789999999999999999999999987621111
Q ss_pred ---------------CccCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCCC-----------------
Q 020091 172 ---------------QPANAEEAVKLLYQASIA--------GHVRAQYQLALCLHRGRGVDFN----------------- 211 (331)
Q Consensus 172 ---------------~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~G~g~~~d----------------- 211 (331)
..+++++|+.+|+++++. ....++.++|.+|.. .++
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHH
Confidence 689999999999998754 235688999999987 788
Q ss_pred HHHHHHHHHHHHHC----C----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHh
Q 020091 212 LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLF 275 (331)
Q Consensus 212 ~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~ 275 (331)
+++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|++++.. ++ ..++..+|.+|.
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999763 2 34588899999976 45999999999999875 23 237889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 276 TEGEMMKAVVYLELATRAGE--------TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~~~~--------~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
..|++++|+.+|+++++... ..+..+++.++ ...++.++|...+++.++
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY--TLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHH
Confidence 99999999999999987532 33444555444 566788899888887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-15 Score=127.79 Aligned_cols=173 Identities=13% Similarity=0.045 Sum_probs=143.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 020091 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA 171 (331)
Q Consensus 97 ~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~ 171 (331)
+..++.+++.+|..+.. .+++++|+.+|++++... + +.+++.+|.+|...|++++|+.+|++++...+...
T Consensus 11 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp CCSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 34689999999999999 899999999999999873 5 88999999999999999999999999999865321
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CC---CCCCCHHHHHHHHHHHHHC--CCHHHH--------------
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GR---GVDFNLQEAARWYLRAAEG--GYVRAM-------------- 231 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~---g~~~d~~~A~~~~~~A~~~--~~~~a~-------------- 231 (331)
..+.+++.+|.+|.. +. ...+++++|+.+|+++++. ++..+.
T Consensus 87 ------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 87 ------------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA 148 (261)
T ss_dssp ------------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred ------------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH
Confidence 247889999999864 10 0157899999999999875 333333
Q ss_pred ---HHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHc
Q 020091 232 ---YNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTE----------GEMMKAVVYLELATRA 293 (331)
Q Consensus 232 ---~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~----------~~~~~A~~~~~~A~~~ 293 (331)
+.+|.+|.. .+++++|+.+|++++... .+.+++.+|.+|... |++++|+.+|+++++.
T Consensus 149 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 149 RKQYEAARLYER----RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 889999976 559999999999998762 357889999999876 8999999999999987
Q ss_pred CC
Q 020091 294 GE 295 (331)
Q Consensus 294 ~~ 295 (331)
.+
T Consensus 225 ~p 226 (261)
T 3qky_A 225 FP 226 (261)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-15 Score=129.66 Aligned_cols=203 Identities=13% Similarity=0.060 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+.+++.+|.+|.. .+++++|+.+|+++++. . .+.++..+|.+|...|++++|+.+|++++...
T Consensus 26 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-- 99 (311)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--
Confidence 46788999999999 89999999999999874 2 45678999999999999999999999988652
Q ss_pred CCCccCHHHHHHHHHHHHH---CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHH
Q 020091 170 AAQPANAEEAVKLLYQASI---AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSL 236 (331)
Q Consensus 170 ~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----------~~~~a~~~lg~ 236 (331)
++... .....+++++|.+|.. .+++++|+.+|+++++. ....++.++|.
T Consensus 100 --------------~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 100 --------------EKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------------HHHhCCCChHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 11100 1235677788888876 67888888888888653 13456778888
Q ss_pred HHhcCCCccccHHHHHHHHHHHHHc------C-C---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------------
Q 020091 237 CYSFGEGLPLSHRQARKWMKRAADC------G-H---GKAQLEHGLGLFTEGEMMKAVVYLELATRA------------- 293 (331)
Q Consensus 237 ~y~~g~g~~~~~~~A~~~~~~a~~~------~-~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~------------- 293 (331)
+|.. .+++++|+.+|+++... + + ..++..+|.+|...|++++|+.+|+++++.
T Consensus 162 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 162 LCQN----QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHT----TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8865 44888888888888764 1 2 345677888888888888888888888763
Q ss_pred ------------------------------------CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 294 ------------------------------------GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 294 ------------------------------------~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.+..+.............++.++|...+++.++..|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2333333344444445667788888888887765553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-14 Score=125.49 Aligned_cols=187 Identities=14% Similarity=0.047 Sum_probs=132.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (331)
..++.++|+..+..++....+..++.+++.+|.+|.. .|++++|+.+|++ .++++++..+|.+|...|+.++|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~----~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY----DQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH----TTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH----CCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4455666665555554433233466666666666666 6666666666666 45666666666666666666666
Q ss_pred HHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHH--HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Q 020091 157 ISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLA--LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY 232 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg--~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~ 232 (331)
+..|++++...+ ++.......+ .++.. .+++++|+.+|+++++. +++.+++
T Consensus 150 ~~~l~~~~~~~p---------------------~~~~~~l~~a~~~l~~~----~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 150 RKELKKMQDQDE---------------------DATLTQLATAWVSLAAG----GEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp HHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhhCc---------------------CcHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 666666666543 2332222222 22222 47899999999999875 7889999
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcCCHHHH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYLELATRAGETAAD 299 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~~~A~~~~~~~a~ 299 (331)
++|.+|.. .+++++|...|++++.. +++++++++|.++...|+.++ +..+++++.+.++..+.
T Consensus 205 ~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 205 GQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 99999976 45999999999999887 678999999999999999876 56899999988765543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=117.69 Aligned_cols=161 Identities=12% Similarity=0.049 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.++.. .+++++|+.+|+++... .++.+++.+|.++...|++++|+.+|++++...+
T Consensus 7 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------- 73 (186)
T 3as5_A 7 RQVYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--------- 73 (186)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred hhHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Confidence 35678889999999 89999999999999876 4899999999999999999999999999998865
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 255 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 255 (331)
.++.+++.+|.+|.. .+++++|+.+|++++.. ++..++..+|.+|.. .+++++|..+|
T Consensus 74 ------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~ 133 (186)
T 3as5_A 74 ------------DNVKVATVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSF 133 (186)
T ss_dssp ------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHH
Confidence 478899999999987 78999999999999875 678899999999976 45999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 256 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 256 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+++... .+..++..+|.++...|++++|+.+|+++++.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999877 46788999999999999999999999999875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.3e-15 Score=126.72 Aligned_cols=204 Identities=12% Similarity=-0.015 Sum_probs=165.4
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
....+...+..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++++... ++.+++.+|.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 344555667889999999999988887654 79999999999999 899999999999999864 8899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
+|...|++++|+.+|++++...+... ..+++++|+.+|.+++.. .+... +.++.++.. .++.+
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~ 194 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-WNIVEFYLG----NISEQ 194 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-HHHHHHHTT----SSCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHH----hcCHH
Confidence 99999999999999999999877654 458899999999998764 33333 345566554 56789
Q ss_pred HHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHH
Q 020091 214 EAARWYLRAAEGGY------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYL 287 (331)
Q Consensus 214 ~A~~~~~~A~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~ 287 (331)
+|+..++++++... ..+++.+|.+|.. .+++++|+.+|++++..... .....+.++...|++++|+..|
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVANNVH-NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999977643 6889999999976 45999999999999987532 2344577888899999999887
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=149.70 Aligned_cols=191 Identities=13% Similarity=0.017 Sum_probs=152.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--------hC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------AR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~--------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
..++.+.+..| .. .+++++|++.|++++ .. +++.+++.+|.++...|++++|+..|+++++.+
T Consensus 391 p~~~~a~~~~a---~~----~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 391 PTDVAASVLQA---TV----LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp TTSTTHHHHHH---TT----TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHhhc---cc----ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 45666777666 33 689999999999998 44 478899999999999999999999999998876
Q ss_pred CCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCcc
Q 020091 168 DPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP 245 (331)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~ 245 (331)
+ +++.+++++|.+|.. .+++++|+..|++|++. ++..+++++|.+|.. .
T Consensus 464 p---------------------~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~ 514 (681)
T 2pzi_A 464 G---------------------WRWRLVWYRAVAELL----TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----A 514 (681)
T ss_dssp C---------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----H
T ss_pred c---------------------chHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----c
Confidence 5 689999999999987 78899999999999765 788999999999976 4
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhc------hhcHH
Q 020091 246 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLS------ATSRD 315 (331)
Q Consensus 246 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~------~~~~~ 315 (331)
+++++ +.+|+++++. .+..++++||.++...|++++|+.+|++|++.++ ..+..+++.++.... ..+.+
T Consensus 515 g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 593 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIR 593 (681)
T ss_dssp TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHH
T ss_pred CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence 58888 9999999876 5788999999999999999999999999988765 455556666653322 35566
Q ss_pred HHHHHHHhhh
Q 020091 316 RAMLVVDSWR 325 (331)
Q Consensus 316 ~a~~~~~~~~ 325 (331)
+|...+.++.
T Consensus 594 ~A~~~l~~~~ 603 (681)
T 2pzi_A 594 DAARRVEALP 603 (681)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHhhCC
Confidence 6666555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-15 Score=135.62 Aligned_cols=214 Identities=17% Similarity=0.093 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA- 171 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~- 171 (331)
....+++.+|.++.. .+++++|+.+|++++..+ + ..+++.+|.++...|++++|+.+|++++.......
T Consensus 7 ~~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 7 ASCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 356788999999999 899999999999999864 4 46788999999999999999999999987622111
Q ss_pred ----------------CccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCCC----------------
Q 020091 172 ----------------QPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN---------------- 211 (331)
Q Consensus 172 ----------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~G~g~~~d---------------- 211 (331)
..+++++|+.+|+++++. ++ +.++.++|.+|.. .++
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhh
Confidence 678999999999998764 33 5589999999987 778
Q ss_pred ----HHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 020091 212 ----LQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHG 271 (331)
Q Consensus 212 ----~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg 271 (331)
+++|+.+|.++++. ++ ..++.++|.+|.. .+++++|+.+|+++... ++ ..++.++|
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999753 22 4578899999976 55999999999999865 32 23788999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 272 LGLFTEGEMMKAVVYLELATRAG----E----TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~~----~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
.+|...|++++|+.+|+++++.. + ..+..+++.+ ....++.++|...+++..+
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT--YTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH--HHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999998652 2 2344444444 4566788899888887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.8e-16 Score=122.17 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=104.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLL 183 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~ 183 (331)
.||.++.. .+++++|+..|++++... ++.+++.||.+|...|++++|+.+|++++++.+
T Consensus 2 ~LG~~~~~----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------------- 62 (150)
T 4ga2_A 2 PLGSMRRS----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------------- 62 (150)
T ss_dssp -----CCC----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HhHHHHHH----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Confidence 37888877 788888888888887764 566778888888888888888888888888766
Q ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH-HHHHHHH
Q 020091 184 YQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK-WMKRAAD 260 (331)
Q Consensus 184 ~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~-~~~~a~~ 260 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|.. |+++|++
T Consensus 63 ------~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 63 ------RDPKAHRFLGLLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAK 128 (150)
T ss_dssp ------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence 578888888888876 77888888888888764 577888888888765 335555444 4577776
Q ss_pred c--CCHHHHHHHHHHHhccCC
Q 020091 261 C--GHGKAQLEHGLGLFTEGE 279 (331)
Q Consensus 261 ~--~~~~a~~~Lg~~~~~~~~ 279 (331)
. +++.++...+.++..+|+
T Consensus 129 l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 129 LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HSTTCHHHHHHHHHHHHTCCC
T ss_pred hCcCCHHHHHHHHHHHHHhCc
Confidence 5 567777777777766664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-15 Score=127.56 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+.+++.+|.+|.. .+++++|+.+|+++++. + .+.++.++|.+|...|++++|+.+|++++...
T Consensus 42 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 115 (283)
T 3edt_B 42 VATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-- 115 (283)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--
Confidence 57889999999999 89999999999999865 2 45678999999999999999999999988761
Q ss_pred CCCccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHH
Q 020091 170 AAQPANAEEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------G--YVRAMYNTSL 236 (331)
Q Consensus 170 ~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--------~--~~~a~~~lg~ 236 (331)
++.... ....+++++|.+|.. .+++++|+.+|+++++. . ...++.++|.
T Consensus 116 --------------~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 116 --------------EKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp --------------HHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred --------------HHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 111111 235566777777765 66777777777777654 1 2445667777
Q ss_pred HHhcCCCccccHHHHHHHHHHHHHc------------------------------------------------C---CHH
Q 020091 237 CYSFGEGLPLSHRQARKWMKRAADC------------------------------------------------G---HGK 265 (331)
Q Consensus 237 ~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------------------------~---~~~ 265 (331)
+|.. .+++++|+.+|+++... . ...
T Consensus 178 ~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 178 CYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 7755 44777777777777653 1 124
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++..||.+|...|++++|+.+|+++++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667777777778888888877777653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=124.74 Aligned_cols=174 Identities=17% Similarity=0.077 Sum_probs=145.7
Q ss_pred hCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCC
Q 020091 133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH---VRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 133 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~G~g~~ 209 (331)
...++.+++.+|..+...|++++|+.+|++++...+ ++ +.+++.+|.+|.. .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---------------------~~~~~~~a~~~lg~~~~~----~ 65 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR---------------------THEWAADAQFYLARAYYQ----N 65 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS---------------------CSTTHHHHHHHHHHHHHH----T
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------CCcchHHHHHHHHHHHHH----h
Confidence 346889999999999999999999999999998876 35 8899999999987 8
Q ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCC----CccccHHHHHHHHHHHHHcC--CHHHH-----------
Q 020091 210 FNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGE----GLPLSHRQARKWMKRAADCG--HGKAQ----------- 267 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g~----g~~~~~~~A~~~~~~a~~~~--~~~a~----------- 267 (331)
+++++|+.+|+++++. ....+++.+|.+|.... -..+++++|+.+|++++... +..+.
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 9999999999999985 23678999999996410 00349999999999999863 33333
Q ss_pred ------HHHHHHHhccCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhhh--------chhcHHHHHHHHHhhhcCC
Q 020091 268 ------LEHGLGLFTEGEMMKAVVYLELATRAGE-----TAADHVKNVILQQL--------SATSRDRAMLVVDSWRAMP 328 (331)
Q Consensus 268 ------~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-----~~a~~~l~~~~~~l--------~~~~~~~a~~~~~~~~~~~ 328 (331)
+.+|.+|...|++++|+..|+++++..+ ..+.++++.++..+ ..++.++|...++++++..
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8899999999999999999999998643 46788888888766 4588899999999999888
Q ss_pred CCC
Q 020091 329 SLH 331 (331)
Q Consensus 329 ~~~ 331 (331)
|.+
T Consensus 226 p~~ 228 (261)
T 3qky_A 226 PDS 228 (261)
T ss_dssp TTC
T ss_pred CCC
Confidence 864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=128.51 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=141.5
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhC------CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------C-
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALR------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G- 135 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------~- 135 (331)
...+...+..|++++|...+.+.++... ....+.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4445556788999999988888777531 23357789999999999 89999999999999875 2
Q ss_pred ---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 136 ---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----DPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 136 ---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
...++.++|.+|...|++++|+.+|+++++.. .... ....+++++|.+|..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~la~~~~~--- 165 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP------------------DVAKQLNNLALLCQN--- 165 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH------------------HHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh------------------HHHHHHHHHHHHHHH---
Confidence 45678999999999999999999999998762 1100 124455566666654
Q ss_pred CCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH-----------------
Q 020091 208 VDFNLQEAARWYLRAAEG------G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD----------------- 260 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~------~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~----------------- 260 (331)
.+++++|+.+|+++++. + ...++..+|.+|.. .+++++|..+|+++..
T Consensus 166 -~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 166 -QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred -cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 55666666666666543 1 13345566666644 3366666666666654
Q ss_pred --------------------------------c--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 261 --------------------------------C--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 261 --------------------------------~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
. ....++..||.+|...|++++|+.+|+++++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2 234677899999999999999999999998753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=124.08 Aligned_cols=175 Identities=14% Similarity=0.063 Sum_probs=142.4
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHH----------------HHHHHhcCCCCCCCHHHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLR----------------WGKRFKHGRGVRKNLDKALDSF 128 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~----------------LG~~y~~g~g~~~~~~~A~~~~ 128 (331)
....+.++...+..|++++|+..+.+.++..|+ ++.+++. +|.+|.. .+++++|+.+|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~ 77 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKK----NRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 445677888889999999999999988887654 6888899 9999999 89999999999
Q ss_pred HHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-C
Q 020091 129 LKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-G 205 (331)
Q Consensus 129 ~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G 205 (331)
+++++.. ++.+++++|.+|...|++++|+.+|+++++++| +++.+++++|.+|.. |
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA---------------------DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------CCHHHHHHHHHHHHHHh
Confidence 9999874 899999999999999999999999999999877 589999999999853 2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 020091 206 RGVDFNLQEAARWYLRAAEGGYV-RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLG 273 (331)
Q Consensus 206 ~g~~~d~~~A~~~~~~A~~~~~~-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~ 273 (331)
..+..++...|+++...... .+++.+|.++.. .+++++|+.+|+++++.. +..+...|..+
T Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 137 ---EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp ---HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 23466778888888765432 367888888865 559999999999999884 44555555553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-14 Score=130.46 Aligned_cols=209 Identities=13% Similarity=0.056 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA--- 171 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--- 171 (331)
.++.+|..+.. .+++++|+.+|++|... + .+.+++++|.+|...|++++|+.+|++|++......
T Consensus 103 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 103 SLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 56778999998 89999999999999865 3 456889999999999999999999999987633211
Q ss_pred ---------------CccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----
Q 020091 172 ---------------QPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE---- 224 (331)
Q Consensus 172 ---------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~---- 224 (331)
..+++++|+.+|+++++. ++ +.++++||.+|.. .+++++|+.+|++|++
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence 578888888888887653 22 4577788888876 6788888888888876
Q ss_pred -C--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC---HHHHHHHHHHHhccCC---HHHHHHHHHHHH
Q 020091 225 -G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH---GKAQLEHGLGLFTEGE---MMKAVVYLELAT 291 (331)
Q Consensus 225 -~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~---~~a~~~Lg~~~~~~~~---~~~A~~~~~~A~ 291 (331)
. ....+++++|.+|.. .+++++|..+|+++... ++ ......|+.++...++ +.+|+.++++.-
T Consensus 255 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred hCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 2 236678888888865 44888888888888764 12 2344567777777777 777777777631
Q ss_pred Hc-CCHHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 292 RA-GETAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 292 ~~-~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.. ........++.++ ...++.++|...+++..
T Consensus 331 ~~~~~~~~~~~la~~y--~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 LHAYIEACARSAAAVF--ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
Confidence 11 1122333344444 45566677877777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-14 Score=125.72 Aligned_cols=212 Identities=17% Similarity=0.088 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA--- 171 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--- 171 (331)
...++..|..+.. .+++++|+.+|+++++.. + ..++..+|.++...|++++|+.+|++++.......
T Consensus 5 ~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 4567788999999 899999999999999864 4 46788999999999999999999999976521111
Q ss_pred --------------CccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCCC------------------
Q 020091 172 --------------QPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN------------------ 211 (331)
Q Consensus 172 --------------~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~G~g~~~d------------------ 211 (331)
..+++++|+.+|+++++. ++ ..++.++|.+|.. .++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHH
Confidence 678999999999998763 33 4588999999986 677
Q ss_pred --HHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 020091 212 --LQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLG 273 (331)
Q Consensus 212 --~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~ 273 (331)
+++|+.+|+++++. ++ ..++.++|.+|.. .+++++|..+|+++... ++ ..++..+|.+
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999998653 32 4578899999976 55999999999999765 33 2377899999
Q ss_pred HhccCCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 274 LFTEGEMMKAVVYLELATRAG----E----TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 274 ~~~~~~~~~A~~~~~~A~~~~----~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
+...|++++|+.+|+++++.. + ..+..+++.+ ....++.++|...+++.++
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT--YTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH
Confidence 999999999999999998652 2 2344444444 4566788899888887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-15 Score=146.13 Aligned_cols=168 Identities=13% Similarity=0.006 Sum_probs=146.0
Q ss_pred cCCchHHHhHHHHHHHH--------HHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 020091 76 FTLPQLRAASLVCKSWN--------DALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (331)
+..+++++|+..+.+.+ +. +..++.+++.+|.+|.. .+++++|+..|+++++. +++.+++++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLD----LGDVAKATRKLDDLAERVGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 78899999988888777 33 24578999999999999 89999999999999976 59999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+|...|++++|+..|++++++++ +++.+++++|.+|.. .+++++ +.+|++|++.
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P---------------------~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFP---------------------GELAPKLALAATAEL----AGNTDE-HKFYQTVWST 529 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST---------------------TCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHH----cCChHH-HHHHHHHHHh
Confidence 99999999999999999999877 589999999999987 788999 9999999875
Q ss_pred --CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC
Q 020091 226 --GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 279 (331)
Q Consensus 226 --~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~ 279 (331)
++..+++++|.+|.. .+++++|+.+|+++++. .+..+++++|.++...++
T Consensus 530 ~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 530 NDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 789999999999976 45999999999999877 457889999999877665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-14 Score=122.98 Aligned_cols=204 Identities=13% Similarity=-0.006 Sum_probs=154.1
Q ss_pred HHHHHHhc-cCCchHHHhHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC--
Q 020091 68 VLNKIAAS-FTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS-- 136 (331)
Q Consensus 68 ~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~-- 136 (331)
.+.++... ...|++++|...+.+.++.....++ +.++.++|.+|.. .+++++|+.+|++|+.. |+
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS----GGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34444433 3579999999888888776554444 5689999999999 89999999999999865 44
Q ss_pred --HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 137 --TLAMVDAGLMYWEM-DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 137 --~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
+.++.++|.+|... |++++|+.+|++|+++.+... +. .....++.++|.+|.. .++++
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---~~------------~~~~~~~~~lg~~~~~----~g~~~ 175 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---SV------------ALSNKCFIKCADLKAL----DGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CH------------HHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---Ch------------HHHHHHHHHHHHHHHH----hCCHH
Confidence 45789999999996 999999999999987633100 00 0014568899999987 78999
Q ss_pred HHHHHHHHHHHCC--CH-------HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHh--
Q 020091 214 EAARWYLRAAEGG--YV-------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK-----AQLEHGLGLF-- 275 (331)
Q Consensus 214 ~A~~~~~~A~~~~--~~-------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~-----a~~~Lg~~~~-- 275 (331)
+|+.+|+++++.. +. .++.++|.+|.. .+++++|+.+|++++...+ .. ....|+..+.
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 9999999998852 21 267899999976 4599999999999987632 22 2345666554
Q ss_pred ccCCHHHHHHHHHHHHHcCCHHH
Q 020091 276 TEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 276 ~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
+.+++++|+..|.++...++...
T Consensus 252 ~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp CTTTHHHHHHHHTTSSCCCHHHH
T ss_pred CHHHHHHHHHHhccCCccHHHHH
Confidence 46789999999999988776553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=115.33 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
.+.+++.+|..+.. .+++++|+..|++++... + +.+++.+|.+|...|++++|+..|+++++..|...
T Consensus 3 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~--- 75 (225)
T 2yhc_A 3 PPNEIYATAQQKLQ----DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP--- 75 (225)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---
Confidence 57789999999999 899999999999999753 2 47899999999999999999999999998876421
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-C-----------C--CCCCCHHHHHHHHHHHHHC
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHR-G-----------R--GVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G-----------~--g~~~d~~~A~~~~~~A~~~ 225 (331)
..+.+++.+|.+|.. | . -..+++++|+..|+++++.
T Consensus 76 ---------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 76 ---------------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp ---------------THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred ---------------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 113467777777653 0 0 0146788888888888775
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=111.29 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
..+++.+|.++...|++++|+.+|++++...+ .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~----~~~~~~A~ 62 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA---------------------FDVDVALHLGIAYVK----TGAVDRGT 62 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS---------------------CCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------------------cChHHHHHHHHHHHH----cCCHHHHH
Confidence 45678899999999999999999999887755 478999999999987 78999999
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.+|+++++. .+..++..+|.+|.. .+++++|..+|+++... .+..+++.+|.++...|++++|+.+|+++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 63 ELLERSLADAPDNVKVATVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 999999875 678899999999976 55999999999999876 5678899999999999999999999999998
Q ss_pred cCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 293 AGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 293 ~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+ ..+...++.++ ...++.++|...+++..+..|.
T Consensus 139 ~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSY--EQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHC
T ss_pred cCccchHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCC
Confidence 765 45555555555 4567889999999998765554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-14 Score=107.58 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.++..+|..|+. .|++++|+.+|++|++.. ++.+++++|.+|...|++++|+..|++++++++
T Consensus 12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------- 78 (126)
T 4gco_A 12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------- 78 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh---------
Confidence 56778889999998 899999999999998764 888999999999999999999999999988876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.++.+++++|.+|.. .+++++|+++|+++++. ++..+..+|+.++
T Consensus 79 ------------~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 79 ------------KFIKGYIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ------------hhhHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 588999999999987 78899999999999765 6788888888775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-15 Score=117.35 Aligned_cols=136 Identities=14% Similarity=0.044 Sum_probs=108.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+||.++...+++++|+..|++++...+ .++.++++||.+|.. .+++++|+++|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p---------------------~~~~~~~~la~~y~~----~~~~~~A~~~~~~ 56 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPR---------------------QKSIKGFYFAKLYYE----AKEYDLAKKYICT 56 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHH---------------------HHHTTHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCc---------------------ccHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 477788777888888888877776543 467788999999987 8999999999999
Q ss_pred HHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHH-HHHHHHcCC-
Q 020091 222 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY-LELATRAGE- 295 (331)
Q Consensus 222 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~-~~~A~~~~~- 295 (331)
+++. +++.+++++|.+|.. .+++++|+.+|+++++. .++.++++||.+|...|++++|... +++|++..+
T Consensus 57 al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 57 YINVQERDPKAHRFLGLLYEL----EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HHHhCCCCHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 9875 789999999999976 55999999999999987 5789999999999999999887764 699998754
Q ss_pred -HHHHHHHHHHH
Q 020091 296 -TAADHVKNVIL 306 (331)
Q Consensus 296 -~~a~~~l~~~~ 306 (331)
+.+......++
T Consensus 133 ~~~~~~l~~~ll 144 (150)
T 4ga2_A 133 SPAVYKLKEQLL 144 (150)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 44444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=120.29 Aligned_cols=188 Identities=16% Similarity=0.146 Sum_probs=111.5
Q ss_pred CCchHHHhHHHHHHHHHHhCC-----CCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHH
Q 020091 77 TLPQLRAASLVCKSWNDALRP-----LRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLA 139 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~-----~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a 139 (331)
..|++.+|...+.+..+..+. .++ ...+...|.+|.. .+++++|+.+|.++++. ++ ..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 78 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKN----AKQLEQAKDAYLQEAEAHANNRSLFHAAKA 78 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345666666555555544332 011 1123334555555 56666666666666543 22 335
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
+.++|.+|...|++++|+.+|++++++ ..+.|+ ..++.++|.+|.. +++++|
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l-------------------~~~~g~~~~~a~~~~~lg~~~~~-----g~~~~A 134 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVM-------------------YVENGTPDTAAMALDRAGKLMEP-----LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHH-------------------HHTTTCHHHHHHHHHHHHHHHTT-----TCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-------------------HHHcCCHHHHHHHHHHHHHHHHc-----CCHHHH
Confidence 556666666666666666655555533 222333 3466677777752 677778
Q ss_pred HHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccCC
Q 020091 216 ARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGE 279 (331)
Q Consensus 216 ~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~ 279 (331)
+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|++++.. +. ..+++.+|.++...|+
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 8887777653 22 4566777777755 34777777777777654 22 2355667777777777
Q ss_pred HHHHHHHHHHHHHcCCHH
Q 020091 280 MMKAVVYLELATRAGETA 297 (331)
Q Consensus 280 ~~~A~~~~~~A~~~~~~~ 297 (331)
+++|+.+|++++ ..+..
T Consensus 211 ~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHh-CCCCC
Confidence 888887777777 55544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=118.60 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=125.5
Q ss_pred CCCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 117 VRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
..+++++|+.+|++|++. + .+.++..+|.+|...|++++|+.+|++++... ++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------~~~ 76 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR----------------EKT 76 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------HHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH----------------HHH
Confidence 478888999999988863 2 46688999999999999999999999988652 111
Q ss_pred H---HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 187 S---IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 187 ~---~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
. ....+.++.++|.+|.. .+++++|+.+|+++++. ....++.++|.+|.. .+++++|..
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 148 (283)
T 3edt_B 77 LGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEY 148 (283)
T ss_dssp TCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 0 01346788999999987 88999999999999864 235678999999976 459999999
Q ss_pred HHHHHHHc------C-C---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 254 WMKRAADC------G-H---GKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 254 ~~~~a~~~------~-~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+|++++.. . + ..++..||.++...|++++|+.+|+++++.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999876 1 2 457789999999999999999999999875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=130.27 Aligned_cols=147 Identities=12% Similarity=-0.060 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHH
Q 020091 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQY 196 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 196 (331)
+++++|+.+|+++++. +++.+++++|.++...|++++|+.+|+++++..+ +++.+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~ 61 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP---------------------GHPEAVA 61 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST---------------------TCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHH
Confidence 4555666666665544 2555666666666666666666666666655544 3555666
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL 272 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 272 (331)
++|.+|.. .+++++|+.+|+++++. ++..+++++|.+|.. .+++++|+.+|+++.+. ++..++.++|.
T Consensus 62 ~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 62 RLGRVRWT----QQRHAEAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666654 45566666666666543 445556666666644 33566666666666554 34555666666
Q ss_pred HHhcc---CCHHHHHHHHHHHHHcC
Q 020091 273 GLFTE---GEMMKAVVYLELATRAG 294 (331)
Q Consensus 273 ~~~~~---~~~~~A~~~~~~A~~~~ 294 (331)
++... |++++|+.+|+++++.+
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666 66666666666666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=110.98 Aligned_cols=172 Identities=13% Similarity=-0.069 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
.+.+++.+|..+...|++++|+..|++++...+... ..+.+++++|.+|.. .+++++|
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~------------------~~~~a~~~lg~~~~~----~~~~~~A 60 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP------------------YSQQVQLDLIYAYYK----NADLPLA 60 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------------------THHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------------HHHHHHHHHHHHHHh----cCCHHHH
Confidence 577899999999999999999999999998765310 125799999999987 8899999
Q ss_pred HHHHHHHHHC--CCH---HHHHHHHHHHhcC------------C--CccccHHHHHHHHHHHHHcC--CHHH--------
Q 020091 216 ARWYLRAAEG--GYV---RAMYNTSLCYSFG------------E--GLPLSHRQARKWMKRAADCG--HGKA-------- 266 (331)
Q Consensus 216 ~~~~~~A~~~--~~~---~a~~~lg~~y~~g------------~--g~~~~~~~A~~~~~~a~~~~--~~~a-------- 266 (331)
+..|+++++. ++. .+++.+|.+|... . --.+++++|+..|+++++.. ++.+
T Consensus 61 ~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 61 QAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH
Confidence 9999999875 333 4899999998641 0 01348999999999999862 3222
Q ss_pred ---------HHHHHHHHhccCCHHHHHHHHHHHHHcCC--H---HHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 267 ---------QLEHGLGLFTEGEMMKAVVYLELATRAGE--T---AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 267 ---------~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~---~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.+.+|.+|+..|++++|+..|+++++..+ + .+...++.++. ..++.++|...++++...+|.|
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~--~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR--QMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH--HcCCcHHHHHHHHHHHhhCCCc
Confidence 25789999999999999999999998743 2 45556555554 5567789999999998888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-12 Score=111.90 Aligned_cols=185 Identities=17% Similarity=0.072 Sum_probs=136.5
Q ss_pred HHHHHHHh-ccCCchHHHhHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC-
Q 020091 67 DVLNKIAA-SFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS- 136 (331)
Q Consensus 67 ~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~- 136 (331)
..+.++.. ....|++.+|...+.+..+.....++ +.++..+|.+|.. .+++++|+.+|++|++. |+
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34555443 34568999998888887776655554 4588999999998 89999999999999998 22
Q ss_pred ---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCC
Q 020091 137 ---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVD 209 (331)
Q Consensus 137 ---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~ 209 (331)
..++.++|.+|.. |++++|+.+|++|+++ .-..++ ..++.++|.+|.. .
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-------------------~~~~~~~~~~~~~~~~lg~~~~~----~ 168 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-------------------FENEERLRQAAELIGKASRLLVR----Q 168 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-------------------HHHTTCHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-------------------HHhCCChhHHHHHHHHHHHHHHH----c
Confidence 4577899999988 8888888888887754 222333 5678899999987 8
Q ss_pred CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--H-----HHHHHHHHHH
Q 020091 210 FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--G-----KAQLEHGLGL 274 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~-----~a~~~Lg~~~ 274 (331)
+++++|+.+|+++++. +. ..++.++|.++.. .+++++|+.+|++++ ... . .....++..+
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~ 243 (307)
T 2ifu_A 169 QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY 243 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999863 32 3467888888865 349999999999998 532 1 1234455544
Q ss_pred hccCCHHHHHH
Q 020091 275 FTEGEMMKAVV 285 (331)
Q Consensus 275 ~~~~~~~~A~~ 285 (331)
..++.+.+..
T Consensus 244 -~~~d~~~~~~ 253 (307)
T 2ifu_A 244 -DEQDEEQLLR 253 (307)
T ss_dssp -HTTCHHHHHH
T ss_pred -HhcCHHHHHH
Confidence 4666554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=126.66 Aligned_cols=207 Identities=11% Similarity=0.012 Sum_probs=162.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA------ 171 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 171 (331)
-..+.+++.+|..+.. .+++++|+..|.+| +++.++.++|.++.+.|++++|+++|.+|....+...
T Consensus 1102 vn~p~vWsqLAKAql~----~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred cCCHHHHHHHHHHHHh----CCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 3578899999999999 89999999999887 9999999999999999999999999999987763321
Q ss_pred ----CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCcccc
Q 020091 172 ----QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLS 247 (331)
Q Consensus 172 ----~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~ 247 (331)
..+++++ +..| ++..+...+.++|..+.. .+++++|..+|.+| .-+..++.+|.+ .++
T Consensus 1175 faYAKl~rlee-le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvk----Lge 1236 (1630)
T 1xi4_A 1175 FALAKTNRLAE-LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVH----LGE 1236 (1630)
T ss_pred HHHHhhcCHHH-HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHH----hCC
Confidence 2234442 3333 344566777889999887 78899999999996 467788888866 347
Q ss_pred HHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH--
Q 020091 248 HRQARKWMKRAADCG---------------------------HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-- 298 (331)
Q Consensus 248 ~~~A~~~~~~a~~~~---------------------------~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a-- 298 (331)
+++|++.+++|.... +++-...++.+|...|.+++|+.+++.++.......
T Consensus 1237 ~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1237 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 888888888773221 333445677788889999999999999998875554
Q ss_pred HHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 299 DHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 299 ~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
...++.++.+..+++.-++.+.+.+-.+.+|
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 3458999999999999999988877666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=115.58 Aligned_cols=162 Identities=8% Similarity=-0.061 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++.+++.+|..+.. .+++++|+..|++++.. +++.+++.||.++...|++++|+.+|++++...+
T Consensus 114 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p------- 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ------- 182 (287)
T ss_dssp CCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-------
T ss_pred CCchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-------
Confidence 3577889999999988 89999999999998876 4899999999999999999999999998877654
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+........+..+.. .++..+|+..|+++++. +++.++++||.+|.. .+++++|+.
T Consensus 183 --------------~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~ 240 (287)
T 3qou_A 183 --------------DTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALE 240 (287)
T ss_dssp --------------SHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred --------------chHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHH
Confidence 234445555555544 45577789999998764 788999999999976 448999999
Q ss_pred HHHHHHHc--CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 254 WMKRAADC--GH--GKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 254 ~~~~a~~~--~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
.|++++.. ++ ..++.+||.++...|+.++|...|++++.
T Consensus 241 ~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 241 LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999876 34 67889999999999999999999998865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=110.43 Aligned_cols=182 Identities=8% Similarity=-0.028 Sum_probs=149.7
Q ss_pred HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH-HHHHHHHHHhcCCCHHHHHH
Q 020091 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL-AMVDAGLMYWEMDKKEAAIS 158 (331)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-a~~~lg~~~~~~~~~~~A~~ 158 (331)
++|..++.+.++.. ...++.++..+|.++.. .+++++|...|+++++.. ++. ++.++|.++.+.|++++|+.
T Consensus 81 ~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 81 DEAANIYERAISTL-LKKNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 78887777777631 23578899999999998 899999999999999875 565 89999999999999999999
Q ss_pred HHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 020091 159 LYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSL 236 (331)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~ 236 (331)
.|++++...+. ...++...+.+... ..+++++|+..|+++++. +++.++..+|.
T Consensus 156 ~~~~a~~~~p~---------------------~~~~~~~~a~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 156 IFKKAREDART---------------------RHHVYVTAALMEYY---CSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHHTSTTC---------------------CTHHHHHHHHHHHH---TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCC---------------------CHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999988653 45555555555322 157899999999999764 78899999999
Q ss_pred HHhcCCCccccHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 237 CYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 237 ~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
++.. .+++++|+.+|++++.. .....+..++.++...|+.++|...++++++..+.
T Consensus 212 ~~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 212 YLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 9865 34999999999999985 23457788899899999999999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-12 Score=114.12 Aligned_cols=239 Identities=13% Similarity=0.032 Sum_probs=170.3
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCH----HH
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GST----LA 139 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~----~a 139 (331)
+...+..|++++|...+.+.+...+. ++. .++..+|.+|.. .+++++|..+|+++... +++ .+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33455678899998888887776543 333 367888999988 89999999999998764 443 34
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCC-C--------------CccCHHHHHHHHHHHHHCC-------CHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLG----DPA-A--------------QPANAEEAVKLLYQASIAG-------HVR 193 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~-~--------------~~~~~~~A~~~~~~a~~~~-------~~~ 193 (331)
+.++|.++...|++++|+.+|++++... ... . ..+++++|..+++++++.. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 6789999999999999999999998653 210 1 6789999999999987632 246
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCH-HHHH----HHHHHHhcCCCccccHHHHHHHHHHHHHcCC-
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYV-RAMY----NTSLCYSFGEGLPLSHRQARKWMKRAADCGH- 263 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~~-~a~~----~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 263 (331)
++.++|.++.. .+++++|..+++++... +.. .... .++.++.. .+++++|..+++++.....
T Consensus 176 ~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 176 CLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCC
Confidence 78889998876 78899999999998753 221 1111 23333433 3489999999998876532
Q ss_pred -----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 264 -----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GET----AADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 264 -----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~~----~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
......+|.++...|++++|...+++++.. +.. .+...++.++ ...++.++|...+++.+
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY--WQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH--HHhCCHHHHHHHHHHHH
Confidence 235578899999999999999999988764 211 2334444444 34566777777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-12 Score=99.56 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
++++.++|..|+..|++++|+.+|+++++.++ .++.+++++|.+|.. .+++++|+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~~~~~~~~----~~~~~~A~ 67 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---------------------ENAILYSNRAACLTK----LMEFQRAL 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHhhHHHh----hccHHHHH
Confidence 34455566666666666666666666665544 356666666666654 55566666
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG 273 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 273 (331)
.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++. ++.+++..|+.+
T Consensus 68 ~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 68 DDCDTCIRLDSKFIKGYIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 666666543 345555555555543 22555555555555444 334444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=110.16 Aligned_cols=158 Identities=9% Similarity=-0.063 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
..++.+|..+.. .+++++|+..|++++.. +++.+++.+|.++...|++++|+..|++++...+
T Consensus 7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------- 71 (176)
T 2r5s_A 7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----------- 71 (176)
T ss_dssp TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-----------
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-----------
Confidence 457788999988 89999999999998765 5999999999999999999999999998877643
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
++.....++.+...+ ..+..+|+..|+++++. +++.+++++|.+|.. .+++++|+.+|++
T Consensus 72 -----------~~~~~~~~~~~~~~~---~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 72 -----------DNSYKSLIAKLELHQ---QAAESPELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWN 133 (176)
T ss_dssp -----------CHHHHHHHHHHHHHH---HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHh---hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHH
Confidence 233333334332211 11223578999999865 678999999999976 4599999999999
Q ss_pred HHHcC--C--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 258 AADCG--H--GKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 258 a~~~~--~--~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
++... + ..++.+||.++...|+.++|+..|++++.
T Consensus 134 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 134 ILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 98874 2 55899999999999999999999998875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=124.84 Aligned_cols=162 Identities=13% Similarity=-0.044 Sum_probs=124.7
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHH
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEA 155 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~ 155 (331)
.|++++|...+.+.++..+ .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++++|.+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3677888777777776644 479999999999999 899999999999999875 89999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Q 020091 156 AISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYN 233 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~ 233 (331)
|+.+|+++++..+ +++.+++++|.+|.. .+++++|+.+|+++++. ++..++.+
T Consensus 76 A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 130 (568)
T 2vsy_A 76 AAVLLQQASDAAP---------------------EHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQ 130 (568)
T ss_dssp HHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999998876 589999999999987 78999999999999875 67899999
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHHH
Q 020091 234 TSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHG 271 (331)
Q Consensus 234 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg 271 (331)
+|.+|.. .+-.+++++|..+|+++++.+ +...+..|+
T Consensus 131 l~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 131 LLNWRRR-LCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHH-TTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHH-hhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999976 211259999999999998874 344555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=108.15 Aligned_cols=166 Identities=8% Similarity=-0.047 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST------LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
...+...+..+.. .+++++|+++|.++.+.. .. ..++.+|.++...|++++|+.+|++++.......
T Consensus 75 ~~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~- 149 (293)
T 2qfc_A 75 KKQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI- 149 (293)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-
Confidence 4456667888888 899999999999998753 22 3467899999999999999999999987643210
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHhcCCC
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GY----VRAMYNTSLCYSFGEG 243 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~~----~~a~~~lg~~y~~g~g 243 (331)
+. .+...+++++|.+|.. .+++++|+.+|++|++. ++ ..+++++|.+|..
T Consensus 150 --~~------------~~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~--- 208 (293)
T 2qfc_A 150 --DV------------YQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL--- 208 (293)
T ss_dssp --CT------------THHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---
T ss_pred --ch------------HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH---
Confidence 00 0125688999999987 88999999999999832 22 2689999999976
Q ss_pred ccccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHhccCCHHHH-HHHHHHHHHc
Q 020091 244 LPLSHRQARKWMKRAADCG--------HGKAQLEHGLGLFTEGEMMKA-VVYLELATRA 293 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~~~~~~~~~~A-~~~~~~A~~~ 293 (331)
.+++++|+.+|++++... ...+++++|.+|...|++++| ..+|++|+..
T Consensus 209 -~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 -DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 559999999999998652 157889999999999999999 8889999863
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=104.35 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++..+ ++.++++||.+|...|++++|+.+|++++.++|
T Consensus 34 ~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------- 101 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------- 101 (151)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------
Confidence 367789999999998 899999999999998874 899999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
+++.+++++|.+|.. .+++++|+.+|+++++...
T Consensus 102 -------------~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 102 -------------NDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp -------------SCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred -------------CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 588999999999987 7889999999999987643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-12 Score=106.40 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAV 180 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~ 180 (331)
+..++.+|.++.. .+++++|+.+|+++++ .++.+++++|.+|...|++++|+.+|++++...+
T Consensus 6 ~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------ 68 (213)
T 1hh8_A 6 AISLWNEGVLAAD----KKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------ 68 (213)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------
Confidence 4567888999888 8999999999998863 3788899999999999999999999998888765
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 181 KLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 181 ~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 69 ---------~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 69 ---------HLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp ---------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred ---------cchHHHHHHHHHHHH----cccHHHHHHHHHHHHHh
Confidence 578889999999887 78899999999998874
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=111.83 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=163.3
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C------CHHH
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G------STLA 139 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~------~~~a 139 (331)
.....|++++|...+.+.++..+..+++ .++..+|.++.. .|++++|+.+|++++.. + ...+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 3456799999999888888877666655 457889999999 89999999999999864 2 2356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------------CccCHHHHHHHHHHHHHC----CCH-HHHH--
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------------QPANAEEAVKLLYQASIA----GHV-RAQY-- 196 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~A~~~~~~a~~~----~~~-~a~~-- 196 (331)
+.++|.++...|++++|+.+|++++...+... ..+++++|..+++++... +.+ ....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 77899999999999999999999998765432 678999999999998753 332 1111
Q ss_pred --HHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC-
Q 020091 197 --QLALCLHRGRGVDFNLQEAARWYLRAAEGGY------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH- 263 (331)
Q Consensus 197 --~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~- 263 (331)
.++.++.. .+++++|..+++++..... ...+..+|.++.. .+++++|..+++++... +.
T Consensus 218 ~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~ 289 (373)
T 1hz4_A 218 NKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEIVLEELNENARSLRLM 289 (373)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCcch
Confidence 23344554 6889999999999976532 3356788888876 45999999999998754 32
Q ss_pred ---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 264 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 264 ---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..++..+|.++...|++++|..+|++++..
T Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 246778999999999999999999999865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=103.34 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
...++++|.++...|++++|+.+|+++++ .++.+++++|.+|.. .+++++|+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~lg~~~~~----~g~~~~A~ 57 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD------------------------PHSRICFNIGCMYTI----LKNMTEAE 57 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------------CCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC------------------------CChHHHHHHHHHHHH----cCCHHHHH
Confidence 34577899999999999999999988741 267899999999987 78999999
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CH----------------HHHHHHHHHHhc
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG----------------KAQLEHGLGLFT 276 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----------------~a~~~Lg~~~~~ 276 (331)
.+|+++++. ++..+++++|.+|.. .+++++|+.+|+++++.. +. .+++++|.++..
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 999999875 688999999999976 459999999999999863 22 889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCHH
Q 020091 277 EGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~~~ 297 (331)
.|++++|+.+|+++++..+..
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSG
T ss_pred ccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999987643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-11 Score=92.97 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.+++.+|.++...|++++|+.+|++++...+ .++.+++.+|.++.. .+++++|+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A~~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------RSAEAWYNLGNAYYK----QGDYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC---------------------cchhHHHHHHHHHHH----hcCHHHHHH
Confidence 4678899999999999999999998887755 478889999999876 688999999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 218 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 218 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+|++++.. ++..+++.+|.++.. .+++++|..+|+++... .+..+++.+|.++...|++++|..+|+++++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999765 567889999999965 44999999999999876 45788899999999999999999999999876
Q ss_pred CC
Q 020091 294 GE 295 (331)
Q Consensus 294 ~~ 295 (331)
++
T Consensus 133 ~~ 134 (136)
T 2fo7_A 133 DP 134 (136)
T ss_dssp ST
T ss_pred CC
Confidence 54
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-11 Score=115.44 Aligned_cols=217 Identities=10% Similarity=-0.006 Sum_probs=157.1
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC---CCCCHH-------HHHHHHHHHHh-C--CCHHHHHHHHHHHhc
Q 020091 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG---VRKNLD-------KALDSFLKGAA-R--GSTLAMVDAGLMYWE 149 (331)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g---~~~~~~-------~A~~~~~~A~~-~--~~~~a~~~lg~~~~~ 149 (331)
.+...+.+.+...| .++.+++.+|.++..-.. ..|+++ +|+..|++|+. . +++..++.+|.++..
T Consensus 256 ~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777777765 479999999999873000 036765 99999999996 3 488999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--
Q 020091 150 MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHV-RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-- 226 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-- 226 (331)
.|++++|+..|++++...+. ++ .++.++|.++.. .+++++|+..|++|++..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~---------------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI---------------------DPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS---------------------CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCTTC
T ss_pred cCCHHHHHHHHHHHhCcccc---------------------CchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCC
Confidence 99999999999999988653 43 578888888765 567889999999998763
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HH--HHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TA--ADH 300 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~--a~~ 300 (331)
....+...+.+.... .++.++|..+|+++++. +++..+..++.++...|+.++|..+|++|+...+ +. ...
T Consensus 389 ~~~~~~~~a~~~~~~---~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 389 RHHVYVTAALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp CTHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred chHHHHHHHHHHHHH---cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 334444444442121 33888999999988876 5678888888888888999999999999988642 21 112
Q ss_pred HHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 301 VKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 301 ~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+...+......|+.+.+..+.++.++..|
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 22222223445677788877777766555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=112.36 Aligned_cols=189 Identities=14% Similarity=0.084 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++... ++.+++++|.+|...|++++|+..|++++.+.+
T Consensus 2 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------- 69 (281)
T 2c2l_A 2 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------- 69 (281)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------
Confidence 367889999999999 899999999999999864 899999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHhcCCCccccHHHHHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~--a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.+... .+....+... ...++..|
T Consensus 70 -------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~~ 125 (281)
T 2c2l_A 70 -------------QSVKAHFFLGQCQLE----MESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------RIAKKKRW 125 (281)
T ss_dssp -------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------HHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------HHHHHHHH
Confidence 589999999999987 789999999999998753211 1111111111 23344555
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH--HHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH--VKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~--~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
....... .+......++.++ .|++++|+..|++|++.++.+... .+..+.. -..+..+++.+++.+..+
T Consensus 126 ~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 126 NSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEA-KHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHH-HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHhhhc
Confidence 5544433 4556666777754 799999999999999886644322 2222222 122445677777876654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-11 Score=104.94 Aligned_cols=161 Identities=9% Similarity=-0.025 Sum_probs=126.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 106 RWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL------AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 106 ~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~------a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.....+.. .+++++|..+|+++.+.. .+. .+..+|.++...+++++|+.+|++++....... +.
T Consensus 80 ~~i~~~~~----~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~---~~- 151 (293)
T 3u3w_A 80 DQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---DV- 151 (293)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS---CT-
T ss_pred HHHHHHHH----HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc---cH-
Confidence 34556666 799999999999998753 333 334689999888999999999999998543211 00
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHhcCCCccccH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----G----YVRAMYNTSLCYSFGEGLPLSH 248 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-----~----~~~a~~~lg~~y~~g~g~~~~~ 248 (331)
.+...++.+||.+|.. .+++++|+.+|++|++. + ...+++++|.+|.. .+++
T Consensus 152 -----------~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y 212 (293)
T 3u3w_A 152 -----------YQNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRY 212 (293)
T ss_dssp -----------THHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCH
T ss_pred -----------HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHH
Confidence 0114578999999987 78999999999999841 2 24578999999987 5599
Q ss_pred HHHHHHHHHHHHc----CC----HHHHHHHHHHHhccC-CHHHHHHHHHHHHHc
Q 020091 249 RQARKWMKRAADC----GH----GKAQLEHGLGLFTEG-EMMKAVVYLELATRA 293 (331)
Q Consensus 249 ~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~-~~~~A~~~~~~A~~~ 293 (331)
++|+.+++++++. ++ ..+++++|.+|...| ++++|+.+|++|+..
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999864 11 678899999999999 579999999999863
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-11 Score=91.37 Aligned_cols=128 Identities=21% Similarity=0.280 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++...+++++|+.+|++++...+
T Consensus 2 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----------- 66 (136)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------
T ss_pred cHHHHHHHHHHH----cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----------
Confidence 567889999998 89999999999999875 4788999999999999999999999999988765
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
+++.+++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.+|.. .+++++|..+|++
T Consensus 67 ----------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 67 ----------RSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQK 128 (136)
T ss_dssp ----------TCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHH
Confidence 478888999999986 78999999999999875 568889999999975 4599999999999
Q ss_pred HHHcC
Q 020091 258 AADCG 262 (331)
Q Consensus 258 a~~~~ 262 (331)
+....
T Consensus 129 ~~~~~ 133 (136)
T 2fo7_A 129 ALELD 133 (136)
T ss_dssp HHHHS
T ss_pred HHccC
Confidence 87653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-12 Score=99.99 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...|++++|+.+|++++..+| +++.++++||.+|.. .+++++|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---------------------~~~~~~~~lg~~~~~----~g~~~~A 89 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---------------------YNVDYIMGLAAIYQI----KEQFQQA 89 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----HccHHHH
Confidence 455666677777666666666666666666655 466666666666665 5566666
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+.+|++|++. +++.+++++|.+|.. .+++++|+.+|++++..
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 6666666543 444555555555533 22444444444444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=117.73 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|+.+|+++++. .++.+++++|.++...|++++|+.+|++++.+.+....... +++. ........++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~-----~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQ-----KAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHH-----HHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHH-----HHHHHHHHHH
Confidence 45677888888887754 47889999999999999999999999999998775432111 1111 1112236889
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|++|++. +++.+++++|.+|.. .+++++|+.+|+++++. .+..++..||
T Consensus 200 ~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 200 LNLAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999987 88999999999999875 689999999999976 45999999999999887 5788999999
Q ss_pred HHHhccCCHHHH-HHHHHHHHH
Q 020091 272 LGLFTEGEMMKA-VVYLELATR 292 (331)
Q Consensus 272 ~~~~~~~~~~~A-~~~~~~A~~ 292 (331)
.++...|++++| ...|++...
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 456766654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-12 Score=101.96 Aligned_cols=158 Identities=10% Similarity=-0.034 Sum_probs=125.7
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLM 146 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~ 146 (331)
.+..+...+..|++++|...+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++... ++.....++.+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLE----TKQFELAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHH----TTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHH----CCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence 455666678889999999888888877664 79999999999999 899999999999998765 56555555544
Q ss_pred Hh-cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 147 YW-EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 147 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
.. ..++..+|+..|++++...| +++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP---------------------DNFELACELAVQYNQ----VGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HHHhhcccchHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHh
Confidence 32 22223346777777776655 689999999999987 88999999999999987
Q ss_pred C----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 226 G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 226 ~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
. +..++.++|.+|.. .++.++|..+|++++.
T Consensus 138 ~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence 4 25699999999965 4488999999998864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-11 Score=106.27 Aligned_cols=175 Identities=10% Similarity=-0.053 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQL 198 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 198 (331)
.+.+.-..++.... -+++++++.+|..+...|++++|+..|++++...+ +++.+++.|
T Consensus 100 ~~~~~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~a~~~l 157 (287)
T 3qou_A 100 QPEEAIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN---------------------QNGEIGLLL 157 (287)
T ss_dssp CCHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---------------------SCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---------------------cchhHHHHH
Confidence 34445555555443 56788999999999999999999999999998877 689999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 020091 199 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL 274 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 274 (331)
|.+|.. .+++++|+.+|++++.. +.......++..+.. ..+..+|+..|++++.. ++..++++||.+|
T Consensus 158 a~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l 229 (287)
T 3qou_A 158 AETLIA----LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQL 229 (287)
T ss_dssp HHHHHH----TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH----CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999987 78999999999999765 333444455554543 23667789999999876 6789999999999
Q ss_pred hccCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 275 FTEGEMMKAVVYLELATRAGE----TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 275 ~~~~~~~~A~~~~~~A~~~~~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
...|++++|+..|+++++..+ ..+..+++.++..+.+. +++...+++.+
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~--~~a~~~~r~al 282 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG--DALASXYRRQL 282 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC--CcHHHHHHHHH
Confidence 999999999999999998753 56788888888776554 45666666654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-11 Score=105.03 Aligned_cols=166 Identities=11% Similarity=-0.023 Sum_probs=126.4
Q ss_pred HHHHhccCCchHHHhHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----H
Q 020091 70 NKIAASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----T 137 (331)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~ 137 (331)
..+...+..+++.+|...+....+......+ ...++.+|.+|.. .+++++|+.+|++|++. ++ .
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3455677889999998888877765443222 2234468999887 78999999999999984 22 4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.++.+||.+|...|++++|+.+|+++++.-... .. .......+++++|.+|.. .+++++|+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~------------~~~~~~~~~~nlg~~y~~----~~~y~~A~~ 217 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HD------------NEEFDVKVRYNHAKALYL----DSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SC------------CHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--cc------------chhHHHHHHHHHHHHHHH----HhHHHHHHH
Confidence 478999999999999999999999998531100 00 001245688999999987 899999999
Q ss_pred HHHHHHHC----C----CHHHHHHHHHHHhcCCCccc-cHHHHHHHHHHHHHc
Q 020091 218 WYLRAAEG----G----YVRAMYNTSLCYSFGEGLPL-SHRQARKWMKRAADC 261 (331)
Q Consensus 218 ~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~a~~~ 261 (331)
+|++|++. + .+.+++++|.+|.. .+ ++++|..+|++|...
T Consensus 218 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHH
Confidence 99999863 2 27889999999976 33 579999999999763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=93.45 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.++..||..++. .+++++|+.+|++|++.. ++.+++++|.+|...|++++|+..|++++++.+... .++
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~-- 79 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR--ADY-- 79 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCH--
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--hhh--
Confidence 6778899999999 899999999999999874 899999999999999999999999999998754211 000
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNT 234 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~l 234 (331)
...+.+++++|.+|.. .+++++|+++|+++++. .++.....|
T Consensus 80 ----------~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 80 ----------KLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp ----------HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 0124678899999987 88999999999999874 344444333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-11 Score=103.91 Aligned_cols=166 Identities=12% Similarity=-0.018 Sum_probs=127.1
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--------C
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--------S 136 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--------~ 136 (331)
+..+...+..|++++|...+...++..+... ....++.+|.+|.. .+++++|+.+|++|+... .
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT----SSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3555567788999999888887777654422 12456788999988 789999999999998641 1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
..+++++|.+|...|++++|+.+|+++++...... .+.. -...+++++|.+|.. .+++++|+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~------------~~~~~~~nlg~~y~~----~~~y~~Al 216 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEE------------FDVKVRYNHAKALYL----DSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHH------------HHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--cccc------------chHHHHHhHHHHHHH----HhhHHHHH
Confidence 56889999999999999999999999984411000 0000 012688999999987 89999999
Q ss_pred HHHHHHHHCC--------CHHHHHHHHHHHhcCCCccccHHHH-HHHHHHHHH
Q 020091 217 RWYLRAAEGG--------YVRAMYNTSLCYSFGEGLPLSHRQA-RKWMKRAAD 260 (331)
Q Consensus 217 ~~~~~A~~~~--------~~~a~~~lg~~y~~g~g~~~~~~~A-~~~~~~a~~ 260 (331)
.+|++|++.. ...+++++|.+|.. .+++++| ..+|++|..
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence 9999997641 26789999999976 4489999 888999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9e-11 Score=93.40 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
.+..++.+|.++...|++++|+.+|++++...+ .++.+++++|.+|.. .+++++|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A 66 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP---------------------SNAIYYGNRSLAYLR----TECYGYA 66 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHH----cCCHHHH
Confidence 345677788888888888888888888777655 467788888888876 6788888
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHH--HHHHHhccCCHHHHHHHHHH
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE--HGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~--Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++... .+..++.. ++..+...|++++|+.++.+
T Consensus 67 ~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 67 LGDATRAIELDKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888888764 567788888888865 34888888888888766 34555533 44446777888888888877
Q ss_pred HHH
Q 020091 290 ATR 292 (331)
Q Consensus 290 A~~ 292 (331)
+..
T Consensus 143 ~~~ 145 (166)
T 1a17_A 143 KRS 145 (166)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=92.61 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+..++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...|++++|+.+|.+++...+
T Consensus 12 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------- 78 (166)
T 1a17_A 12 RAEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------- 78 (166)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------
Confidence 36788999999999 899999999999998764 899999999999999999999999999998866
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH--HhcCCCccccHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC--YSFGEGLPLSHRQARK 253 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~--y~~g~g~~~~~~~A~~ 253 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+ +.. .+++++|+.
T Consensus 79 ------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~ 138 (166)
T 1a17_A 79 ------------KYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIA 138 (166)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 578999999999987 78999999999999875 566777555554 543 458999999
Q ss_pred HHHHHHH
Q 020091 254 WMKRAAD 260 (331)
Q Consensus 254 ~~~~a~~ 260 (331)
++.++..
T Consensus 139 ~~~~~~~ 145 (166)
T 1a17_A 139 GDEHKRS 145 (166)
T ss_dssp HHHHHHH
T ss_pred cccchHH
Confidence 9988754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=106.07 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=125.0
Q ss_pred CchHHHhHHHHHHHHHHhCCCCCHHHHHHH-------HHHHhcCCCCCCCHHHHHHHHHHHHhC------------CC--
Q 020091 78 LPQLRAASLVCKSWNDALRPLREAMVLLRW-------GKRFKHGRGVRKNLDKALDSFLKGAAR------------GS-- 136 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~L-------G~~y~~g~g~~~~~~~A~~~~~~A~~~------------~~-- 136 (331)
.++..+|...|.+..+..++ .++++..+ +.++.. .....+++..+++++.. |-
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~----~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFR----AWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHH----HHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred CCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHH----HHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 45555555555555555443 45555544 444444 34444555555555542 10
Q ss_pred ---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 137 ---------TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 137 ---------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
.+....++.++...|++++|...|...+..++ ++. ++|.+|.++..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p---------------------~~~-~~~~~a~l~~~--- 147 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS---------------------EHL-VAWMKAVVYGA--- 147 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC---------------------HHH-HHHHHHHHHHH---
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---------------------chH-HHHHHHHHHHH---
Confidence 22333445555555555555555555444332 456 99999999987
Q ss_pred CCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhccC
Q 020091 208 VDFNLQEAARWYLRAAEGGYV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEG 278 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~ 278 (331)
.+++++|+.+|+++....++ .+.++||.++.. .+++++|+.||+++.... ..++.+++|.++..+|
T Consensus 148 -~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 148 -AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp -TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred -cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 89999999999988776533 489999999965 449999999999998664 3468999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 020091 279 EMMKAVVYLELATRAGET 296 (331)
Q Consensus 279 ~~~~A~~~~~~A~~~~~~ 296 (331)
+.++|...|+++...++.
T Consensus 223 r~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 999999999999987665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-10 Score=100.50 Aligned_cols=221 Identities=8% Similarity=-0.090 Sum_probs=153.7
Q ss_pred HHHHHHhccCCchH-HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHhCC--CHHHHHH
Q 020091 68 VLNKIAASFTLPQL-RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK--NLDKALDSFLKGAARG--STLAMVD 142 (331)
Q Consensus 68 ~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~--~~~~A~~~~~~A~~~~--~~~a~~~ 142 (331)
...........+.+ ++|+..+...+..-|+ +..+++.-|.+... .+ ++++++.++.+++..+ +..+++.
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~----l~~~~~~eeL~~~~~~L~~nPk~y~aW~~ 108 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELAS--HYTIWIYRFNILKN----LPNRNLYDELDWCEEIALDNEKNYQIWNY 108 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHT----CTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHH----cccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence 34444444555555 5898888888888765 78999999999988 55 9999999999999875 8899999
Q ss_pred HHHHH----hcC---CCHHHHHHHHHHHHHcCCCCC-----------CccCHH--HHHHHHHHHHHC--CCHHHHHHHHH
Q 020091 143 AGLMY----WEM---DKKEAAISLYRQAAVLGDPAA-----------QPANAE--EAVKLLYQASIA--GHVRAQYQLAL 200 (331)
Q Consensus 143 lg~~~----~~~---~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~--~A~~~~~~a~~~--~~~~a~~~lg~ 200 (331)
.+.++ ... +++++++.++.++++.++.+. ..+.++ +++.++.++++. .+..|+.+.+.
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99888 665 789999999999998877544 233444 677777776654 46677777776
Q ss_pred HHhcCCCCCCC------HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-----CHHHH
Q 020091 201 CLHRGRGVDFN------LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQ 267 (331)
Q Consensus 201 ~y~~G~g~~~d------~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~ 267 (331)
++.. .+. ++++++++.+++.. ++..+++.++.++.... +..+....++.+.++.+ ++.+.
T Consensus 189 ll~~----l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 189 LLFS----KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD---RSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHS----SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT---CCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHh----ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC---CChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 6654 222 66777777777653 66777777777775432 13444445555544432 56667
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH-cCCHHHHHH
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATR-AGETAADHV 301 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~-~~~~~a~~~ 301 (331)
..|+.+|.+.|+.++|+..|+++++ .++....++
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHH
Confidence 7777777777777777777777775 466555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-11 Score=90.64 Aligned_cols=110 Identities=13% Similarity=-0.042 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+..++.+|..+.. .+++++|+.+|+++++.. ++.+++++|.+|...|++++|+..|++++.+++
T Consensus 3 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------- 69 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred hHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------
Confidence 36778889999988 899999999999998764 788999999999999999999999999988876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--------YVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--------~~~a~~~lg~~y 238 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.. +..+...++.+.
T Consensus 70 ------------~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 70 ------------NFVRAYIRKATAQIA----VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 578899999999987 788999999999987643 344555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-10 Score=94.90 Aligned_cols=94 Identities=17% Similarity=-0.010 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-C----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 261 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~-~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 261 (331)
+.++.++|.+|.. .+++++|+.+|+++++. + + ..++.++|.+|.. .+++++|..+|+++...
T Consensus 66 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 66 HRALHQVGMVERM----AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Confidence 3445555555554 45555555555555442 2 1 2345555665544 33566666666665532
Q ss_pred ---CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 262 ---GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 262 ---~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++. .++.++|.++...|++++|+.+++++++.
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 138 QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 232 34578888888888999998888888764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=119.46 Aligned_cols=207 Identities=11% Similarity=-0.005 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCCCCc
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQA-----AVLGDPAAQP 173 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~ 173 (331)
++.++..++..+.. .+++++|+.+|+.+.+. +++.....|+.+|.+.|+..+++.+|..- ..+|+.....
T Consensus 60 D~~~y~~V~~~ae~----~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 60 DPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTCC---------------
T ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 34455555555544 45555555555554432 23334445555555555555555554321 0111111145
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHH
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARK 253 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 253 (331)
+.+++|..+|.++ ..+..||.++.+ .+++++|++.|++| +++..+-.++.++.. .++++.|..
T Consensus 136 g~yeeA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~----~~ef~lA~~ 198 (449)
T 1b89_A 136 KMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVD----GKEFRLAQM 198 (449)
T ss_dssp -CTTTHHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred CCHHHHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHH----cCcHHHHHH
Confidence 5555555555544 344555555554 55566666666655 455555554444433 225555544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 254 WMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 254 ~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+..... -+++-...+..+|.+.|.+++|+.+++.++... ......-++.++.+..+++..++.+.+..-.+.+|
T Consensus 199 ~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 199 CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 433211 334444456678899999999999999998764 56777889999999999999999888776555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.9e-12 Score=99.13 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|++++..+ ++.+++++|.++...|++++|+.+|++++.+++
T Consensus 19 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------- 86 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-------- 86 (148)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------
T ss_pred hhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------
Confidence 367788888988888 889999999999888764 888888999999888999999999888888766
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 87 -------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 -------------XEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL 118 (148)
T ss_dssp -------------TCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred -------------CCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 578888999998886 78899999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=96.69 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++++|.+|...|++++|+.+|++++.+++
T Consensus 9 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------- 76 (164)
T 3sz7_A 9 PESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------- 76 (164)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Confidence 357889999999999 899999999999999864 899999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. ++..+++..+...
T Consensus 77 -------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 77 -------------KYSKAWSRLGLARFD----MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp -------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 589999999999987 78999999999999764 5555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.8e-11 Score=91.09 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
+.++.+||..++..|++++|+.+|++|+++.| .++.+++++|.+|.. .+++++|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p---------------------~~~~~~~nlg~~~~~----~~~~~~A~ 62 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP---------------------SNITFYNNKAAVYFE----EKKFAECV 62 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHhHHHHHHH----hhhHHHHH
Confidence 44566777777777777777777777777655 467777777777776 67777777
Q ss_pred HHHHHHHHCCC--HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 217 RWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 217 ~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
.+|+++++.+. ......+ ..+++++|.++...|++++|+.+|++++...
T Consensus 63 ~~~~~al~~~~~~~~~~~~~-----------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 63 QFCEKAVEVGRETRADYKLI-----------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHTTCCHHHH-----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCcccchhhHHH-----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777765311 1001111 2355667777777778888888887777653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=104.94 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--C---------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---------------TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
++.+++.+|.+|+. .+++++|+.+|++|+... + +.+++++|.+|...|++++|+.+|++
T Consensus 146 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57899999999999 999999999999999874 4 68999999999999999999999999
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
++.+.+ +++.+++++|.+|.. .+++++|+.+|+++++. ++..++.++|.++..
T Consensus 222 al~~~p---------------------~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 222 ALELDS---------------------NNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHhCC---------------------CcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999876 589999999999987 88999999999999875 688999999999976
Q ss_pred CCCccccHHHH-HHHHHHHH
Q 020091 241 GEGLPLSHRQA-RKWMKRAA 259 (331)
Q Consensus 241 g~g~~~~~~~A-~~~~~~a~ 259 (331)
.+++++| ...|++..
T Consensus 277 ----~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 ----IRRQLAREKKLYANMF 292 (336)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 4477777 44555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.6e-12 Score=109.21 Aligned_cols=200 Identities=13% Similarity=0.083 Sum_probs=152.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH-------HHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA-------GLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l-------g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
.++..|.-+ . .+|+..|.+.|.+++... .++++..+ +.++....+..+++..+++++.+.+....
T Consensus 9 ~~~~~~~~~-~----~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~- 82 (282)
T 4f3v_A 9 SLFESAVSM-L----PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN- 82 (282)
T ss_dssp HHHHHHHHH-T----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC-
T ss_pred HHHHHHhcc-c----CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh-
Confidence 345555555 3 699999999999999875 89999988 78888877788888888888875442100
Q ss_pred cCHHHHHHHHHHHHH-CC-----------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh
Q 020091 174 ANAEEAVKLLYQASI-AG-----------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYS 239 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~-~~-----------~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~ 239 (331)
-... .| -.+....++.++.. .+++++|.+.|......+ +. +++.+|.++.
T Consensus 83 -----------a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~----~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~ 146 (282)
T 4f3v_A 83 -----------ARIAIGGLYGDITYPVTSPLAITMGFAACEAA----QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG 146 (282)
T ss_dssp -----------CEEECCTTTCCCEEECSSHHHHHHHHHHHHHH----HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH
T ss_pred -----------hhhccCCcccccccccCCHhHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH
Confidence 0000 01 13455567777876 788999999999987654 45 8999999998
Q ss_pred cCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhhc
Q 020091 240 FGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-----ETAADHVKNVILQQLS 310 (331)
Q Consensus 240 ~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~-----~~~a~~~l~~~~~~l~ 310 (331)
. .+++++|+.+|+.+....+ ..++++||.++...|++++|+.+|++++... ..++.++.+.++. .
T Consensus 147 ~----~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~--~ 220 (282)
T 4f3v_A 147 A----AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR--S 220 (282)
T ss_dssp H----TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH--H
T ss_pred H----cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH--H
Confidence 7 6699999999998876543 3589999999999999999999999998543 2345666666655 5
Q ss_pred hhcHHHHHHHHHhhhcCCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++.++|...++++....|.
T Consensus 221 lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTCHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCc
Confidence 56778999999999887774
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=88.59 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++.+|.++...+++++|+.+|++++...+
T Consensus 14 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------- 81 (133)
T 2lni_A 14 DLALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-------- 81 (133)
T ss_dssp CHHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--------
T ss_pred ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------
Confidence 457788888888888 788888888888888764 788888888888888888888888888887755
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. .+..++..++.++.
T Consensus 82 -------------~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 82 -------------TFIKGYTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp -------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred -------------CchHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467888888888876 67888888888888765 45667777777764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=95.23 Aligned_cols=94 Identities=16% Similarity=0.035 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 267 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 267 (331)
+.+++++|.++.. .+++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|++++.. +++.++
T Consensus 21 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3344444444433 34444444444444332 334444444444433 22444444444444443 345666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
+++|.+|...|++++|+.+|+++++.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666667777777777766665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-10 Score=115.14 Aligned_cols=217 Identities=16% Similarity=0.082 Sum_probs=154.9
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~ 154 (331)
....|.+++|..+|+ ++. .+..+ ++.++.. .+++++|++++++. ..+.+++.+|..+...|+++
T Consensus 1059 ai~lglyEEAf~IYk----Ka~--~~~~A---~~VLie~----i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFR----KFD--VNTSA---VQVLIEH----IGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHhCCCHHHHHHHHH----HcC--CHHHH---HHHHHHH----HhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHH
Confidence 456678888855544 322 12222 2444545 67888888888755 77999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---------CccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 155 AAISLYRQAAVLGDPAA---------QPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~---------~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+|+..|.+| +++.. ..+++++|+.+|..|.+.. .+.+...+|.+|.. .+++++ ++.| +.
T Consensus 1123 EAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK----l~rlee-le~f---I~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK----TNRLAE-LEEF---IN 1191 (1630)
T ss_pred HHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh----hcCHHH-HHHH---Hh
Confidence 999999887 22222 7889999999999987753 34455579998886 456664 4444 34
Q ss_pred CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH----
Q 020091 225 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH---- 300 (331)
Q Consensus 225 ~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~---- 300 (331)
..+...+..+|..+.. .+++++|..+|.+| ..+..||.+|...|++++|+..+++|.+ ..++.
T Consensus 1192 ~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~n---~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKANS---TRTWKEVCF 1258 (1630)
T ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhCC---HHHHHHHHH
Confidence 4566777889999976 55999999999997 5788899999999999999999998833 23321
Q ss_pred ------------------------HHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 301 ------------------------VKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 301 ------------------------~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.-..+...-..+..++++.+++..+..++.|
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 1122222344566777777777776666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-11 Score=92.33 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++..+ ++.+++.+|.+|...|++++|+.+|++++.+++
T Consensus 17 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------- 83 (142)
T 2xcb_A 17 TLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--------- 83 (142)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 56788889999988 899999999999998764 888999999999999999999999999998876
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 84 ------------~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 ------------NEPRFPFHAAECHLQ----LGDLDGAESGFYSARAL 115 (142)
T ss_dssp ------------TCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred ------------CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 588899999999987 78899999999998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-10 Score=93.39 Aligned_cols=154 Identities=16% Similarity=0.044 Sum_probs=117.9
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHH
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLM 146 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~ 146 (331)
.+..|++.+|...+..+ ...+ ...+.++..+|.+|.. .+++++|+.+|++++.. + .+.++.++|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQAL-LAHP-ATASGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHH-HTST-TTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHh-cCCh-HHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 35678899997643322 2222 2578899999999999 89999999999999872 2 45678999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 020091 147 YWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221 (331)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~ 221 (331)
+...|++++|+.+|++++.... ..+ ...+++++|.+|.. .+++++|+.+|++
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLA-------------------SLPEDPLAASANAYEVATVALH----FGDLAGARQEYEK 132 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH-------------------HSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH-------------------HcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence 9999999999999999887511 112 24578899999987 7899999999999
Q ss_pred HHHC----CCH----HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 222 AAEG----GYV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 222 A~~~----~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++. ++. .++.++|.+|.. .+++++|..+|+++.+.
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQ----EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 9753 443 346899999976 44999999999999764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-10 Score=86.76 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...+++++|+.+|++++...+ .++.+++++|.+|.. .+++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---------------------~~~~~~~~la~~~~~----~~~~~~A 69 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---------------------KDAKLYSNRAACYTK----LLEFQLA 69 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---------------------TCHHHHHHHHHHHTT----TTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------CcHHHHHHHHHHHHH----hccHHHH
Confidence 455666666666666666666666666666544 356666666666654 5666666
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccC
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG 278 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~ 278 (331)
+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++... .+..++..++.++...|
T Consensus 70 ~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 70 LKDCEECIQLEPTFIKGYTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666553 445566666666644 33566666666666554 23455555555554433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.9e-11 Score=95.22 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=95.5
Q ss_pred CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH-HhcCCCccc
Q 020091 172 QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC-YSFGEGLPL 246 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~-y~~g~g~~~ 246 (331)
..+++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+ |.. .+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ----AS 93 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----TT
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cC
Confidence 34455555555555544 3689999999999987 78999999999999764 689999999999 644 23
Q ss_pred cH--HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHH
Q 020091 247 SH--RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 297 (331)
Q Consensus 247 ~~--~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 297 (331)
++ ++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..+..
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 66 9999999999887 568899999999999999999999999999986643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=93.59 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=95.9
Q ss_pred ccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH-HhcCC
Q 020091 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM-YWEMD 151 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~-~~~~~ 151 (331)
.+..|++++|...+...++..+ .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+ +...+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 3556778888877777777655 478889999999988 89999999999998875 488889999988 77788
Q ss_pred CH--HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 152 KK--EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 152 ~~--~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
++ ++|+.+|++++...+ +++.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 94 ~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDS---------------------NEITALMLLASDAFM----QANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhCC---------------------CcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhC
Confidence 87 888888888888765 578888999998887 788999999999988753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.3e-10 Score=102.10 Aligned_cols=202 Identities=12% Similarity=0.017 Sum_probs=157.1
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCH---------------HHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA---------------MVLLRWGKRFKHGRGVRKNLDKALDSFL 129 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~a~~~LG~~y~~g~g~~~~~~~A~~~~~ 129 (331)
|...+..+......|++.+|...+...++..+..++. .++..||.+|.. .+++++|.++|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKLREFIP 79 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 5567788888888999999999999988877665432 468999999999 999999999999
Q ss_pred HHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 130 KGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 130 ~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
++... +. ......+|.++...+++++|+.+|++++....... -.........+||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~la~~ 144 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---------------RVFLKHSLSIKLATL 144 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---------------CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---------------ccHHHHHHHHHHHHH
Confidence 98753 22 23456788888888999999999888765411000 001236788999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CCH-----
Q 020091 202 LHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG----- 264 (331)
Q Consensus 202 y~~G~g~~~d~~~A~~~~~~A~~~--------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~----- 264 (331)
|.. .+++.+|..+++++... ....++..+|.+|.. .+|+++|..+|+++... +++
T Consensus 145 ~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 145 HYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 987 78999999999998652 235678899999976 56999999999998754 222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..+..+|.++...+++++|..+|..+.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34567899899999999999999999763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-11 Score=100.58 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|.+.+...... ..+..+..+|.++...+++++|+.+|.+++...+........ .+.-....+ ...++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~~---~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNI---EISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HHHHHHHHH---HHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hHHHHHHHH---HHHHH
Confidence 67788887777755433 467788999999999999999999999999986543211111 000000111 14788
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+|++++.. .+..++..++
T Consensus 92 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 92 LNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 899999987 78899999999999775 678888899998866 55889999999988776 5677888888
Q ss_pred HHHhccCCHHHHH
Q 020091 272 LGLFTEGEMMKAV 284 (331)
Q Consensus 272 ~~~~~~~~~~~A~ 284 (331)
.++...++.+++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 8887777666666
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-10 Score=82.07 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...+++++|+.+|++++...+
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------- 69 (118)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---------
Confidence 45678888888888 78888888888888775 3788888888888888888888888888887765
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+.
T Consensus 70 ------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 ------------DWGKGYSRKAAALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 477888888888876 67888888888888775 5667777777664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-10 Score=85.20 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 266 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 266 (331)
.+.+++++|..+.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+
T Consensus 3 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHH
Confidence 35778999999987 78999999999999875 678999999999976 55999999999999987 56889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
++.+|.++...|++++|+.+|+++++.+
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999876
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=90.48 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHH
Q 020091 210 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
+++++|+.+|++++.. .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++++|.+|...|++++|+.
T Consensus 32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444332 234444444444432 22444444444444433 344555556666666666666666
Q ss_pred HHHHHHHc
Q 020091 286 YLELATRA 293 (331)
Q Consensus 286 ~~~~A~~~ 293 (331)
+|+++++.
T Consensus 108 ~~~~al~~ 115 (142)
T 2xcb_A 108 GFYSARAL 115 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.8e-10 Score=83.44 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...+++++|+.+|.+++...+
T Consensus 11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------- 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--------- 77 (131)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---------
Confidence 46677888888888 78888888888888765 3778888888888888888888888888877655
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
.++.+++.+|.+|.. .+++++|+.+|+++++. ++..++..+|.++..
T Consensus 78 ------------~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 ------------AYSKAYGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ------------cCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 467788888888876 67788888888888764 567777777777743
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-10 Score=89.54 Aligned_cols=93 Identities=18% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQL 268 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 268 (331)
.+++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+++
T Consensus 12 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 12 DKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334444444443 34444444444444432 334444444444433 22444455555444443 3345555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 269 EHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
++|.+|...|++++|+.+|+++++.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5555555566666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-10 Score=85.56 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPAN 175 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 175 (331)
..++..++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...+++++|+.+|++++...+
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------- 74 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG------- 74 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------
Confidence 3478899999999999 899999999999998864 789999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 176 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 176 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 75 --------------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 75 --------------QSVKAHFFLGQCQLE----MESYDEAIANLQRAYSL 106 (137)
T ss_dssp --------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred --------------hhHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 588999999999987 78999999999999864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-09 Score=83.92 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQP 173 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 173 (331)
.++..++.+|.++.. .+++++|+.+|+++++.. + +.+++++|.+|...+++++|+.+|++++...+
T Consensus 26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----- 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----- 96 (148)
T ss_dssp CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----
Confidence 467888889999988 899999999999998875 2 77888999999999999999999988888765
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 174 ANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 174 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+..
T Consensus 97 ----------------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 97 ----------------GDVKALYRRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp ----------------CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ----------------cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 478889999998886 78899999999998765 56777777777763
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-10 Score=83.36 Aligned_cols=115 Identities=18% Similarity=0.099 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...+++++|+.+|++++...+ .++.+++.+|.+|.. .+++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A 65 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP---------------------ANAVYFCNRAAAYSK----LGNYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---------------------CCHHHHHHHHHHHHH----hhchHHH
Confidence 345566666677666677777776666666544 356666677776665 5667777
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 279 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~ 279 (331)
+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++... .+..++..+|.++...|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 7777766553 445566666666644 33666666666666554 345555566665555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=81.33 Aligned_cols=110 Identities=21% Similarity=0.283 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...|++++|+.+|++++...+
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------- 74 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----------
Confidence 6778888888888 78899999999988875 3778888889888888888888888888887755
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
.++.+++++|.+|.. .+++++|+.+|+++++. .+..++..+|.++.
T Consensus 75 -----------~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 75 -----------NNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp -----------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 467788888888876 67888888888888764 56777888887764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-09 Score=103.93 Aligned_cols=179 Identities=10% Similarity=0.010 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHHHH-cCCCCCCccCHHHHHHHHH
Q 020091 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKKE-------AAISLYRQAAV-LGDPAAQPANAEEAVKLLY 184 (331)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~A~~~~~ 184 (331)
.+++..|++|+.. .++.+++.+|.++.. .|+.+ +|+..|++|+. ..+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p---------------- 318 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---------------- 318 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS----------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc----------------
Confidence 4788999999876 589999999999985 67766 77777777775 433
Q ss_pred HHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CH-HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 185 QASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YV-RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 185 ~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+++..+..+|.++.. .+++++|...|+++++.. ++ .++..+|.++.. .++.++|...|++|++.
T Consensus 319 -----~~~~l~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 319 -----KNMLLYFAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKARED 385 (530)
T ss_dssp -----SCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTC
T ss_pred -----ccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 589999999999987 689999999999999874 33 578888888765 44899999999999987
Q ss_pred CC--HHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 262 GH--GKAQLEHGLG-LFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 262 ~~--~~a~~~Lg~~-~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
.. ...+...+.+ +...|++++|...|+++++..+..+...+..+......++.++|..++++.+...|
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 43 3444454544 34599999999999999987554444444444445667889999999999887644
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-10 Score=86.58 Aligned_cols=93 Identities=19% Similarity=0.096 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHH
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVK 181 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~ 181 (331)
++.+|..+.. .+++++|+..|++++... ++.+++.||.++...|++++|+..|++++.+++
T Consensus 20 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------------- 82 (121)
T 1hxi_A 20 PMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------------- 82 (121)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------
Confidence 4667777777 677778888887777653 777777788777777777777777777777765
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 182 LLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 182 ~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.++++||.+|.. .+++++|+.+|+++++.
T Consensus 83 --------~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 83 --------KDIAVHAALAVSHTN----EHNANAALASLRAWLLS 114 (121)
T ss_dssp --------TCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC-
T ss_pred --------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 467777777777765 66777777777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-10 Score=89.47 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------------------GSTLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--------------------~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
.+..+..+|..++. .+++++|+.+|.+|+.. .++.+++++|.+|...|++++|+.+
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 46778899999999 89999999999999876 2457889999999999999999999
Q ss_pred HHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH-HHHHHHHH
Q 020091 160 YRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV-RAMYNTSL 236 (331)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~-~a~~~lg~ 236 (331)
|.+++.+++ +++.+++++|.+|.. .+++++|+.+|+++++. ++. .....|+.
T Consensus 86 ~~~al~~~p---------------------~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 86 SSEVLKREE---------------------TNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhcCC---------------------cchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999998876 589999999999987 78899999999999875 344 34555555
Q ss_pred HH
Q 020091 237 CY 238 (331)
Q Consensus 237 ~y 238 (331)
+.
T Consensus 141 ~~ 142 (162)
T 3rkv_A 141 VT 142 (162)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-11 Score=112.83 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
.+++++|+.+|+++.+. ..+.++.++|.++...+++++|+.+|++|+.+.+...... .+. ..........++
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-~~~-----~~~~~~~~~~~~ 320 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-EKE-----SKASESFLLAAF 320 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-HHH-----HHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-hHH-----HHHHHHHHHHHH
Confidence 34566788778776654 4778899999999999999999999999999866432111 111 111222346889
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
+++|.+|.. .+++++|+.+|++|++. ++..+++++|.+|.. .+++++|+.+|+++++. .+..++..|+
T Consensus 321 ~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 321 LNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999987 88999999999999875 789999999999976 55999999999999987 4678899999
Q ss_pred HHHhccCCHHHHHHH
Q 020091 272 LGLFTEGEMMKAVVY 286 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~ 286 (331)
.++...+++++|...
T Consensus 393 ~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 393 MCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887743
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=9.6e-10 Score=90.92 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH----------------HHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----------------LAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----------------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
.+..+..+|.++.. .+++++|+.+|++++... ++ .+++++|.+|...+++++|+.+|+
T Consensus 37 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 37 SAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35678889999999 899999999999999863 44 889999999999999999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
+++...+ .++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.++.
T Consensus 113 ~al~~~p---------------------~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 113 KVLKIDK---------------------NNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHST---------------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhCc---------------------ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 9998866 589999999999987 88999999999999875 67889999999985
Q ss_pred c
Q 020091 240 F 240 (331)
Q Consensus 240 ~ 240 (331)
.
T Consensus 168 ~ 168 (198)
T 2fbn_A 168 K 168 (198)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-09 Score=84.54 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQ 172 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 172 (331)
+.+++.+|.+|.. .+++++|+.+|+++++. ++ ..++.++|.++...|++++|+.+|++++...+..
T Consensus 9 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-- 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-- 82 (164)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Confidence 5678888988888 88999999999988765 32 2477888888888888888888888887652110
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHH
Q 020091 173 PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 252 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 252 (331)
++. .....+++++|.+|.. .+++++|+.+|+++++.. ...+ +.
T Consensus 83 -~~~------------~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~-------------~~~~---~~---- 125 (164)
T 3ro3_A 83 -KDR------------AVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIA-------------QELK---DR---- 125 (164)
T ss_dssp -TCH------------HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH-------------HHTT---CH----
T ss_pred -CCc------------HHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHH-------------HHcc---ch----
Confidence 000 0124567788888876 677888888888876420 0000 00
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 253 KWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 253 ~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
.....++..+|.++...|++++|+.+++++++.
T Consensus 126 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 126 --------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 001345566777777777777777777777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=90.74 Aligned_cols=206 Identities=6% Similarity=-0.137 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCC---------------Cc---cCH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD--KKEAAISLYRQAAVLGDPAA---------------QP---ANA 176 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~~~~~~---------------~~---~~~ 176 (331)
...++|+..+.+++..+ +..+++..|.++...+ ++++++.++.+++..++... .. .++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44568999999999875 9999999999999988 99999999999999987776 12 789
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC--ccccH
Q 020091 177 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ--EAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--LPLSH 248 (331)
Q Consensus 177 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~--~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g--~~~~~ 248 (331)
++++.++.++++. .+..++++-+.++.. .++++ ++++++.++++. .+..|+++.+.++..-.. ....+
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 9999999999864 689999999999876 45566 999999999876 689999999999865211 01128
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcC-----CHHHHHHHHHHHhhhchhcHHHHHHH
Q 020091 249 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLV 320 (331)
Q Consensus 249 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~~~A~~~~-----~~~a~~~l~~~~~~l~~~~~~~a~~~ 320 (331)
++++.++.+++.. .+..+++.++.++...|+..+ ...+.+++++.+ +..+...++.++.. .++.++|.+.
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHH
Confidence 9999999999877 678999999999988887444 556777776644 78888888888874 5788899999
Q ss_pred HHhhhc-CCCC
Q 020091 321 VDSWRA-MPSL 330 (331)
Q Consensus 321 ~~~~~~-~~~~ 330 (331)
++.+.+ ..|.
T Consensus 281 ~~~l~~~~Dpi 291 (306)
T 3dra_A 281 YDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHTTCGG
T ss_pred HHHHHhccChH
Confidence 999885 5663
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-09 Score=83.33 Aligned_cols=141 Identities=12% Similarity=-0.000 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
.++..+|.++...+++++|+.+|+++++..+.. ++. .....++.++|.+|.. .+++++|+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~------------~~~~~~~~~l~~~~~~----~g~~~~A~~ 70 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDK------------AAERIAYSNLGNAYIF----LGEFETASE 70 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCH------------HHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---CCc------------hHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 345666666666666666666666665442100 000 0012355566666654 556666666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----
Q 020091 218 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---- 293 (331)
Q Consensus 218 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~---- 293 (331)
+|+++++. ... .+ +. .....++.++|.++...|++++|+.+++++++.
T Consensus 71 ~~~~a~~~------------~~~-~~---~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 71 YYKKTLLL------------ARQ-LK---DR------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHHHHH------------HHH-TT---CH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH------------HHH-hC---Cc------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 66666431 000 00 00 001356678888888899999999999888764
Q ss_pred CC----HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 294 GE----TAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 294 ~~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
++ ..+..+++.+ ....++.++|...+++.++.
T Consensus 123 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 123 KDRIGEGRACWSLGNA--YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TCHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHHH--HHHccCHHHHHHHHHHHHHH
Confidence 22 2334444444 45667788999888886643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.1e-10 Score=81.74 Aligned_cols=98 Identities=15% Similarity=0.027 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++++|.++...+++++|+.+|++++...+
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------- 71 (112)
T 2kck_A 4 QNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-------- 71 (112)
T ss_dssp SSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--------
T ss_pred CcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--------
Confidence 456777888888888 889999999999888764 788888899998888888888888888888765
Q ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~~~--~~~a~~~lg~~y~~G~g~~-~d~~~A~~~~~~A~~~ 225 (331)
. ++.+++++|.+|.. . +++++|+++|++++..
T Consensus 72 -------------~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 72 -------------DEYNKDVWAAKADALRY----IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -------------CTTCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGG
T ss_pred -------------ccchHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhc
Confidence 4 67888888888876 7 8888898888888765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-09 Score=79.04 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
+.+++.+|.++...+++++|+.+|++++...+ +++.+++.+|.+|.. .+++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~la~~~~~----~~~~~~A~ 63 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------NNAEAWYNLGNAYYK----QGDYDEAI 63 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---------------------CcHHHHHHHHHHHHH----hCCHHHHH
Confidence 34555555555555555555555555555433 245555555555554 45555555
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL 274 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 274 (331)
.+|+++++. ++..+++.+|.+|.. .+++++|..+|+++... .+..++..+|.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 64 EYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 555555443 334444445544433 22444555555444443 2334444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=99.45 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=85.6
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
.....+...+..|++.+|+..+...++..++ ++.+++++|.+|.. .+++++|+.+|++++... ++.+++++|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455666678899999999999988888654 79999999999999 899999999999999874 899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+|...|++++|+.+|++++.+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999998754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=82.27 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...|++++|+.+|++++...+..
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 71 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-------- 71 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--------
Confidence 6778999999999 899999999999999864 88999999999999999999999999998774310
Q ss_pred HHHHHHHHHHCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHh
Q 020091 179 AVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYS 239 (331)
Q Consensus 179 A~~~~~~a~~~~~----~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~lg~~y~ 239 (331)
..+ +.+++++|.+|.. .+++++|+.+|+++++. .+......++.++.
T Consensus 72 ----------~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 72 ----------REDYRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 011 7788999999987 78999999999999876 45777777777763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=86.49 Aligned_cols=102 Identities=14% Similarity=0.018 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---------CH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---------ST-----LAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~-----~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
.+..+..+|..++. .+++++|+..|++|+... +. .+++++|.++...|++++|+..|.+|++
T Consensus 10 ~a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36678889999999 899999999999999764 22 3999999999999999999999999988
Q ss_pred cCCCCCCccCHHHHHHHHHHHH--HCCCHHHH----HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 166 LGDPAAQPANAEEAVKLLYQAS--IAGHVRAQ----YQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 166 ~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~----~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+ |.++. +++++.++ +++|.++.. .+++++|+..|++|++.
T Consensus 86 l----------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 Y----------------FNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp H----------------HHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred h----------------hhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 7 11111 12578888 999999987 89999999999999874
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=102.19 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CC---------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---------------TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
++.+++.+|.+|+. .+++++|+.+|++|+.. .+ ..+++++|.+|...+++++|+.+|.+
T Consensus 267 ~a~~~~~~G~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVYFK----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 57789999999999 89999999999999975 34 68999999999999999999999999
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
++.+.+ +++.+++++|.+|.. .+++++|+.+|++|++. ++..++..++.++..
T Consensus 343 al~~~p---------------------~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 343 ALGLDS---------------------ANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHhcCC---------------------ccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999876 589999999999987 88999999999999886 567889999999865
Q ss_pred CCCccccHHHHH
Q 020091 241 GEGLPLSHRQAR 252 (331)
Q Consensus 241 g~g~~~~~~~A~ 252 (331)
.+++.+|.
T Consensus 398 ----~~~~~~a~ 405 (457)
T 1kt0_A 398 ----AKEHNERD 405 (457)
T ss_dssp ----HHHHHHHH
T ss_pred ----HHHHHHHH
Confidence 33555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=107.63 Aligned_cols=216 Identities=10% Similarity=0.008 Sum_probs=89.6
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (331)
..|++++|. .+.+.. +++.+++.||..+.. .+++++|++.|.++ +++.++..++..+...|++++|
T Consensus 15 ~~~~ld~A~----~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAY----EFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHH----HHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHH
Confidence 447788884 455553 467899999999999 89999999999775 6788999999999999999999
Q ss_pred HHHHHHHHHcCCCCC----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 157 ISLYRQAAVLGDPAA----------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 157 ~~~~~~a~~~~~~~~----------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
+.+++++.+..++.. ..+++.++..+++. .+..++.++|..+.. .+.+++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYD----EKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC----C--------------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCHHHHHHHHHHh----
Confidence 999999886432211 56777777777743 455699999999887 78899999999988
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVIL 306 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~ 306 (331)
.-+..|+.++.+ .+++++|.+.|++| +++.++..+..++...|+++.|..+.... ...+.. . ...+.
T Consensus 149 --~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~ad~-l--~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADE-L--EELIN 215 (449)
T ss_dssp --TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCHHH-H--HHHHH
T ss_pred --hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCHhh-H--HHHHH
Confidence 467889999976 55999999999999 68999999999999999999997776642 222222 2 23333
Q ss_pred hhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 307 QQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 307 ~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
.....+..+++..++++-+...+.|
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 3456678889999999988887766
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-09 Score=81.55 Aligned_cols=95 Identities=16% Similarity=0.026 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.+++.+|.++.. .+++++|+.+|+++++.. ++ .+++.+|.++...|++++|+.+|++++...+
T Consensus 3 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-------- 70 (129)
T 2xev_A 3 RTAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-------- 70 (129)
T ss_dssp CCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--------
Confidence 346778888887 788888888888887643 44 6788888888888888888888888887765
Q ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASIAGH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~---~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
++ +.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 71 -------------~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 71 -------------THDKAAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp -------------TSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred -------------CCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 34 6778888888876 67888888888888764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-09 Score=76.81 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
+.+++.+|.++...|++++|+.+|++++...+ +++.+++++|.+|.. .+++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~----~~~~~~A~ 58 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP---------------------HNHVLYSNRSAAYAK----KGDYQKAY 58 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---------------------CcHHHHHHHHHHHHh----hccHHHHH
Confidence 34455555555555555555555555554433 245555555555544 44555555
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH
Q 020091 217 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 260 (331)
Q Consensus 217 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 260 (331)
.+|+++++. ++..+++.+|.+|.. .+++++|..+|+++.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 59 EDGCKTVDLKPDWGKGYSRKAAALEF----LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 555555442 234444444444433 2244444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-09 Score=81.31 Aligned_cols=100 Identities=21% Similarity=0.088 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCH
Q 020091 189 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 264 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 264 (331)
...+.+++.+|.++.. .+++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|++++.. +++
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhH
Confidence 3578999999999987 88999999999999875 678999999999976 55999999999999887 568
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.+++.+|.++...|++++|+.+|+++++..+.
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 89999999999999999999999999986543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-10 Score=99.81 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG 135 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~ 135 (331)
+..++.+|.+++. .+++++|+.+|++|+...
T Consensus 179 a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~ 209 (338)
T 2if4_A 179 ADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYM 209 (338)
T ss_dssp HHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHh
Confidence 5567777777777 778888888888777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-09 Score=97.09 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----------------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----------------R--GSTLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----------------~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
+..+..+|..+.. .+++++|+.+|++|++ . .++.+++++|.+|...+++++|+.+|++
T Consensus 223 a~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 5668888999988 8999999999999887 2 2556778888888888888888888888
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 240 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 240 (331)
++++.+ +++.+++++|.+|.. .+++++|+.+|++|++. ++..+...++.++..
T Consensus 299 al~~~p---------------------~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 299 ALEIDP---------------------SNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHTTCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCc---------------------hhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 887765 477888888888876 67788888888888664 566677777777643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-09 Score=84.35 Aligned_cols=100 Identities=21% Similarity=0.087 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHhcCCCccccHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------------------GYVRAMYNTSLCYSFGEGLPLSHRQ 250 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--------------------~~~~a~~~lg~~y~~g~g~~~~~~~ 250 (331)
.+.++..+|..+.. .+++++|+.+|++|+.. ....+++++|.+|.. .+++++
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~ 81 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHE 81 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHH
Confidence 46778899999987 78999999999999764 345789999999977 569999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 251 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 251 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
|+.++.+++.. .++.+++.+|.+|...|++++|+.+|+++++..+.+.
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999987 5789999999999999999999999999999876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-09 Score=82.28 Aligned_cols=95 Identities=14% Similarity=-0.042 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 269 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 269 (331)
.++.+|..+.. .+++++|+..|+++++. +++.+++.+|.++.. .+++++|+.+|+++++. ++..+++.
T Consensus 19 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46788988876 78899999999999875 789999999999976 45999999999999887 56889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 270 HGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
||.+|...|++++|+.+|+++++..+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999877654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=110.47 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
+++++|.++...|++++|+.+|+++++..+ .++.+++++|.+|.. .+++++|+.+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p---------------------~~~~~~~~lg~~~~~----~g~~~~A~~~ 62 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNP---------------------SNAIYYGNRSLAYLR----TECYGYALGD 62 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------ccHHHHHHHHHHHHH----hcCHHHHHHH
Confidence 445566677777777777777777777655 478888899998887 7889999999
Q ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 020091 219 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG--LFTEGEMMKAVVYLE 288 (331)
Q Consensus 219 ~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~--~~~~~~~~~A~~~~~ 288 (331)
|++|++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+ +...|++++|+..++
T Consensus 63 ~~~al~l~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 63 ATRAIELDKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999876 578888899998876 55899999999998876 456778888887 788899999999998
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=76.96 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CC----
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH---- 263 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~---- 263 (331)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|++++.. .+
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhH
Confidence 5678899999987 78999999999999875 578899999999976 55999999999999876 23
Q ss_pred ---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhh
Q 020091 264 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQL 309 (331)
Q Consensus 264 ---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~~~l~~~~~~l 309 (331)
..+++.+|.++...|++++|+.+|+++++.. +......+..+...+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999875 455555555554433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-08 Score=86.56 Aligned_cols=222 Identities=9% Similarity=-0.075 Sum_probs=132.9
Q ss_pred ccCCchHH-HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC----------HHHHHHHHHHHHhCC--CHHHHH
Q 020091 75 SFTLPQLR-AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAARG--STLAMV 141 (331)
Q Consensus 75 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~----------~~~A~~~~~~A~~~~--~~~a~~ 141 (331)
....|.+. +|+..+...+...|+ +..+++.-+.+... .++ +++++.++..++..+ +..+++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~----l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~ 112 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD--FATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHH----hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33455554 777777777776554 77888888887765 222 678999999888764 889999
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHcCCCCC-----------CccC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC
Q 020091 142 DAGLMYWEMD--KKEAAISLYRQAAVLGDPAA-----------QPAN-AEEAVKLLYQASIA--GHVRAQYQLALCLHRG 205 (331)
Q Consensus 142 ~lg~~~~~~~--~~~~A~~~~~~a~~~~~~~~-----------~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G 205 (331)
.-+.++...+ ++++++.++.++++.++.+. ..+. +++++.++.++++. .+..|+++.+.++..-
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999998877 48899999999998876543 1222 45566666665543 4566666666555431
Q ss_pred CCC----------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCcc-------ccHHHHHHHHHHHHHcCCHHH
Q 020091 206 RGV----------DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP-------LSHRQARKWMKRAADCGHGKA 266 (331)
Q Consensus 206 ~g~----------~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~~~a 266 (331)
... .+.++++++++.+++.. ++..+++.+..++..+.|.. .-+++++.++.+..+......
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 000 02355666666666542 55666665555555544321 234566666666655533323
Q ss_pred HHHHHHHHh-----ccCCHHHHHHHHHHHHHcCCHHHHHHH
Q 020091 267 QLEHGLGLF-----TEGEMMKAVVYLELATRAGETAADHVK 302 (331)
Q Consensus 267 ~~~Lg~~~~-----~~~~~~~A~~~~~~A~~~~~~~a~~~l 302 (331)
+..++.++. ..+..++...++.+.++.++....+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 333222221 244555666666666666665554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-08 Score=77.41 Aligned_cols=109 Identities=17% Similarity=0.025 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G 262 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~-----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 262 (331)
..+..++.+|..+.. .+++++|+.+|+++++... ..+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCcc
Confidence 578899999999987 7899999999999998743 7889999999976 55999999999999876 5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 020091 263 HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVIL 306 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~ 306 (331)
+..+++.+|.++...|++++|+.+|+++++.. +..+...+..+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 68899999999999999999999999999875 455555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-10 Score=106.92 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+.+++.+|.++.. .+++++|+.+|++|++.. ++.+++++|.+|...+++++|+.+|++++++.+
T Consensus 6 a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---------- 71 (477)
T 1wao_1 6 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK---------- 71 (477)
T ss_dssp HTTSSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----------
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------
Confidence 4455667777777 899999999999998764 788999999999999999999999999998866
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH--HhcCCCccccHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC--YSFGEGLPLSHRQARKW 254 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~--y~~g~g~~~~~~~A~~~ 254 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. ++..++.+++.+ +.. .+++++|+..
T Consensus 72 -----------~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~ 132 (477)
T 1wao_1 72 -----------KYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAG 132 (477)
T ss_dssp -----------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC---
T ss_pred -----------CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 578899999999987 78899999999999775 567788888887 543 4588888888
Q ss_pred HH
Q 020091 255 MK 256 (331)
Q Consensus 255 ~~ 256 (331)
++
T Consensus 133 ~~ 134 (477)
T 1wao_1 133 DE 134 (477)
T ss_dssp --
T ss_pred cc
Confidence 88
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-09 Score=77.97 Aligned_cols=99 Identities=9% Similarity=-0.070 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--C--
Q 020091 189 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G-- 262 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~-- 262 (331)
++++.+++.+|.++.. .+++++|+.+|+++++. .+..+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 3 p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CSSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccc
Confidence 3567788899999987 78999999999999875 578889999999976 45899999999999887 4
Q ss_pred CHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCC
Q 020091 263 HGKAQLEHGLGLFTE-GEMMKAVVYLELATRAGE 295 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~-~~~~~A~~~~~~A~~~~~ 295 (331)
+..+++.+|.++... |++++|+.++++++...+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 678889999999999 999999999999987654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-09 Score=84.27 Aligned_cols=98 Identities=17% Similarity=-0.052 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C-------CHH-----HHHHHHHHHhcCCCccccHHHHHHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-------YVR-----AMYNTSLCYSFGEGLPLSHRQARKWMK 256 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~-------~~~-----a~~~lg~~y~~g~g~~~~~~~A~~~~~ 256 (331)
.+..+.++|..+.. .+++++|+.+|++|++. . +.. ++.++|.++.. .+++++|+.+|.
T Consensus 10 ~a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 10 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 35667899999886 78999999999999875 3 333 89999999976 459999999999
Q ss_pred HHHHc-------C--CHHHH----HHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 257 RAADC-------G--HGKAQ----LEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 257 ~a~~~-------~--~~~a~----~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
+|++. . +..++ +++|.++...|++++|+..|++|++..+.
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99987 4 56788 99999999999999999999999987554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.7e-09 Score=79.00 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH---HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CC-
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH- 263 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~---~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~- 263 (331)
+.+++.+|.++.. .+++++|+.+|+++++. ++. .+++.+|.+|.. .+++++|+.+|++++.. ++
T Consensus 2 ~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 2 ARTAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp -CCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTST
T ss_pred cHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCc
Confidence 3467899999987 78999999999999874 455 799999999976 55999999999999886 45
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 264 --GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 264 --~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
+.+++.+|.++...|++++|+.+|+++++..+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999999999998754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-08 Score=86.80 Aligned_cols=177 Identities=5% Similarity=-0.099 Sum_probs=109.7
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
|+.+|++.+.. ....+.+.+|.++...|++++|+.++.+.+..++. .++.+++..++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-------------------~~~lea~~l~vqi 145 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-------------------EGTTELLLLAIEV 145 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-------------------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-------------------cCcHHHHHHHHHH
Confidence 56666666554 35566677888887778888777777777665531 1367777777777
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHH--HHHhc-CCCccccHHHHHHHHHHHHHcCCH--HHHHHH
Q 020091 202 LHRGRGVDFNLQEAARWYLRAAEGGY------VRAMYNTS--LCYSF-GEGLPLSHRQARKWMKRAADCGHG--KAQLEH 270 (331)
Q Consensus 202 y~~G~g~~~d~~~A~~~~~~A~~~~~------~~a~~~lg--~~y~~-g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~L 270 (331)
|.. .++.+.|.+.+++..+... -.....|+ ++... |. .++.+|+..|++..+.... .....+
T Consensus 146 ~L~----~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~---~~~q~A~~~f~El~~~~p~~~~~~lLl 218 (310)
T 3mv2_B 146 ALL----NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK---ETATSNFYYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC---STTTHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHH----CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhCCCcccHHHHH
Confidence 776 6778888888887765543 33344444 22322 22 2678888888887665321 222223
Q ss_pred HHHHhccCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 271 GLGLFTEGEMMKAVVYLELATR------------AGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 271 g~~~~~~~~~~~A~~~~~~A~~------------~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
. ++..+|++++|...++.+.+ .+++++..|+..+...+ ++ ++.+++++++..+|+|
T Consensus 219 n-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l--gk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 219 N-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ--GL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp H-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT--TC--TTHHHHHHHHHTTCCC
T ss_pred H-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh--Ch--HHHHHHHHHHHhCCCC
Confidence 3 67778888888888875543 22333333333233333 33 6677788888888876
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.2e-09 Score=95.66 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH--HHCCCHHHHHHHHHHHhcCCCCCCCHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA--SIAGHVRAQYQLALCLHRGRGVDFNLQ 213 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~y~~G~g~~~d~~ 213 (331)
.+.++..+|..+...+++++|+..|++++...+.. . ........ .+..++.+++++|.+|.. .++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~ 290 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-----R--AAAEDADGAKLQPVALSCVLNIGACKLK----MSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----H--HHSCHHHHGGGHHHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC-----c--cccChHHHHHHHHHHHHHHHHHHHHHHh----ccCHH
Confidence 35668899999999999999999999998742100 0 00001111 122456677778877776 67777
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 284 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 284 (331)
+|+.+|++|++. +++.+++.+|.+|.. .+++++|+.+|++|++. ++..++..|+.++...++.+++.
T Consensus 291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777764 456666666666654 33666666666666655 34555566666655555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=80.49 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCH
Q 020091 118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHV 192 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 192 (331)
.+++++|+.+|+++++.+ ++.++++||.+|...|++++|+.+|+++++..+ +++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~ 61 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---------------------NHQ 61 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------Cch
Confidence 678899999999999873 557889999999999999999999999998876 578
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRA 230 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a 230 (331)
.+++++|.+|.. .+++++|+.+|+++++. +++..
T Consensus 62 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 62 ALRVFYAMVLYN----LGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999987 78899999999999765 44444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=96.56 Aligned_cols=132 Identities=14% Similarity=-0.015 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH-------------------HHHHHHHHHHhcCCCccccHHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV-------------------RAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~-------------------~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
.+.+++++|..+.. .+++++|+.+|++|+..... .+++++|.+|.. .+++++|
T Consensus 178 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~----~g~~~~A 249 (338)
T 2if4_A 178 AADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK----LKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT----TTCCHHH
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH----cCCHHHH
Confidence 35667788888876 77888888888888775432 378899999976 4599999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcC
Q 020091 252 RKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 327 (331)
Q Consensus 252 ~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~ 327 (331)
+.+|++++.. .+..+++++|.+|...|++++|+.+|+++++.. +..+..++..+... .....+++...++++...
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~-~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ-EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCC
Confidence 9999999887 568899999999999999999999999997664 45555566555433 344556777788887777
Q ss_pred CCCC
Q 020091 328 PSLH 331 (331)
Q Consensus 328 ~~~~ 331 (331)
.|.|
T Consensus 329 ~p~~ 332 (338)
T 2if4_A 329 KDEG 332 (338)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-09 Score=81.38 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=72.4
Q ss_pred CchHHHhHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 020091 78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (331)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (331)
.|++++|+..+.+.++... +..++.+++.||.+|.. .+++++|+.+|+++++.. ++.+++++|.++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 4677888777776665410 12467899999999999 899999999999999874 8999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 020091 155 AAISLYRQAAVLGDPA 170 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~ 170 (331)
+|+.+|++++...+..
T Consensus 79 ~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 79 QGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999999886643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-07 Score=85.18 Aligned_cols=198 Identities=10% Similarity=-0.046 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-------------------CHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-------------------STLAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-------------------~~~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
|.+...-|.-+.. .+++++|++.|.++++.. ...++.+||.+|...|++++|+.+|.
T Consensus 4 p~~~l~~a~~l~~----~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 4 PGSKLEEARRLVN----EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp TTHHHHHHHHHHH----HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555666666 799999999999998752 12468899999999999999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHH
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYN 233 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--------~~~~a~~~ 233 (331)
++...-.... ++ .....+..++|.++.. .+++++|+.++++++.. .......+
T Consensus 80 ~~~~~~~~~~------~~---------~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 80 HSTEYMMQFA------KS---------KTVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HTHHHHHTSC------HH---------HHHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHHcc------ch---------HHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 8876422100 00 0012345678888865 78999999999999752 23678899
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CH--HH
Q 020091 234 TSLCYSFGEGLPLSHRQARKWMKRAADC----G----HGKAQLEHGLGLFTEGEMMKAVVYLELATRA----G-ET--AA 298 (331)
Q Consensus 234 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~-~~--~a 298 (331)
||.+|.. .+++.+|..++.++... + ...++..+|.+|...|++++|..+|+++... . +. .+
T Consensus 141 la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 141 LATLHYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 9999976 55999999999998753 1 1467789999999999999999999999764 2 21 24
Q ss_pred HHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 299 DHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 299 ~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
......+......++..+|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444445555667778888877766654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-09 Score=77.98 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++... ++.+++++|.++...|++++|+.+|++++.+.+... +..
T Consensus 3 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE---HVA 75 (111)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT---SHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc---HHH
Confidence 46789999999999 899999999999999864 899999999999999999999999999999876310 000
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
....+++.+|.++..
T Consensus 76 ------------~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 76 ------------IRSKLQYRLELAQGA 90 (111)
T ss_dssp ------------HHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHH
Confidence 016778888888764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=80.62 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=79.9
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC----------HHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAARG--STLAMVDAGLM 146 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~----------~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (331)
+.+++|...+...++..|+ ++.+++++|.++.. .++ +++|+..|++|++.+ +++++++||.+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~----l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLE----LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3478888888888887664 89999999999987 544 569999999999886 99999999999
Q ss_pred HhcC-----------CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 147 YWEM-----------DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 147 ~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
|... +++++|+.+|++|+++++. ...+.++++...++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~---~~~y~~al~~~~ka 137 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD---NTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHTH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhC
Confidence 9876 4899999999999999874 33455555554444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-06 Score=76.42 Aligned_cols=179 Identities=8% Similarity=-0.079 Sum_probs=137.5
Q ss_pred HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC-HHH
Q 020091 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK--NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK-KEA 155 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~--~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~-~~~ 155 (331)
+.+++..+...+...| .+..+++.-+.+... .+ ++++++.++.++++.. +..|+...+.++...+. .++
T Consensus 90 l~~EL~~~~~~L~~~P--Kny~aW~hR~wlL~~----l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRVNP--KSYGTWHHRCWLLSR----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhc----cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHH
Confidence 5677777777777655 489999999998887 34 6999999999999875 99999999999999888 699
Q ss_pred HHHHHHHHHHcCCCCC-----------Cc--------------cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCC
Q 020091 156 AISLYRQAAVLGDPAA-----------QP--------------ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGV 208 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~-----------~~--------------~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~ 208 (331)
++.++.++++.++.+. .. +.+++++.++.+++. +++..+++.+..++..+.|.
T Consensus 164 el~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 164 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 9999999999877665 11 458899999999975 68999999888888776542
Q ss_pred C-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCccccHHHHHHHHHHHHHcCCHH
Q 020091 209 D-------FNLQEAARWYLRAAEGGYVRAMYNTSLCYS-FGEGLPLSHRQARKWMKRAADCGHGK 265 (331)
Q Consensus 209 ~-------~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~ 265 (331)
. +-++++++++.+.++...-..+..++.+.. .+.......++...|+.+..+.++..
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 2 347899999999987644334444444432 11111346789999999998887643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=79.83 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK----------EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
+.+++|+..|++++..+ ++++++++|.++...+++ ++|+..|++|+++++
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP------------------ 77 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP------------------ 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------------------
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc------------------
Confidence 45889999999999875 999999999999987665 466666666666655
Q ss_pred HHCCCHHHHHHHHHHHhc-CCCC------CCCHHHHHHHHHHHHHCCC
Q 020091 187 SIAGHVRAQYQLALCLHR-GRGV------DFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 187 ~~~~~~~a~~~lg~~y~~-G~g~------~~d~~~A~~~~~~A~~~~~ 227 (331)
++++++++||.+|.. |.-+ .+++++|+.+|++|++.+.
T Consensus 78 ---~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 78 ---KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ---CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 689999999999975 2101 1479999999999987643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-07 Score=81.82 Aligned_cols=216 Identities=9% Similarity=-0.117 Sum_probs=152.8
Q ss_pred hHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC-C-CHH
Q 020091 80 QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMYWEM-D-KKE 154 (331)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~-~-~~~ 154 (331)
...+|+..+...+...|+ +..+++.-|.+... .+ ++++++.++.+++..+ +..+++..+.++... + +++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~----l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTS----LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 345888888888888765 78999999999988 45 6999999999999875 999999999999887 7 899
Q ss_pred HHHHHHHHHHHcCCCCC-----------CccC--------HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC---CCC
Q 020091 155 AAISLYRQAAVLGDPAA-----------QPAN--------AEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG---VDF 210 (331)
Q Consensus 155 ~A~~~~~~a~~~~~~~~-----------~~~~--------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g---~~~ 210 (331)
+++.++.++++.++.+. ..+. ..+++.++.++++. .+..|+++.+.++..-.+ ...
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 99999999998876654 1122 34888888888764 688889888888865110 011
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccc----------------cHHHHHHHHHHHHH--------cCCH
Q 020091 211 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPL----------------SHRQARKWMKRAAD--------CGHG 264 (331)
Q Consensus 211 d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~----------------~~~~A~~~~~~a~~--------~~~~ 264 (331)
.++++++++.+++.. ++..+++++..++........ ....-......... ...+
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 267888999888764 788888888877755321100 11111111111111 1345
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCHHHHHH
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATR-AGETAADHV 301 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~-~~~~~a~~~ 301 (331)
-+..-|+.+|...++.++|...|+..++ .++....++
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 6777888888888888899998888874 455554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-07 Score=87.75 Aligned_cols=170 Identities=7% Similarity=-0.139 Sum_probs=115.5
Q ss_pred HHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCC----------HHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 020091 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (331)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~----------~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (331)
++|+..+...++.-|+ +..+++.-|.++.. .++ +++++.++.+++... +..++++.+.++..
T Consensus 46 eeal~~~~~~l~~nP~--~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 46 ESVLELTSQILGANPD--FATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3666667767666554 67777777777766 444 777777777777664 77777777777777
Q ss_pred CC--CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHC-
Q 020091 150 MD--KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDF-NLQEAARWYLRAAEG- 225 (331)
Q Consensus 150 ~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~-d~~~A~~~~~~A~~~- 225 (331)
.+ ++++++.++.++++.++ .+..|+++.|.++.. .+ .++++++++.++++.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~---------------------~N~~aW~~R~~~l~~----l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TCCCHHHHHHHHHTTTTTT
T ss_pred cccccHHHHHHHHHHHHhhcc---------------------ccccHHHHHHHHHHH----cCCChHHHHHHHHHHHHHC
Confidence 76 55777777777777655 477777777777765 33 677788888887765
Q ss_pred -CCHHHHHHHHHHHhcCCC----------ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHH
Q 020091 226 -GYVRAMYNTSLCYSFGEG----------LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 282 (331)
Q Consensus 226 -~~~~a~~~lg~~y~~g~g----------~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~ 282 (331)
.+..|+++.|.++..-.+ ....++++++++.+|+.. ++..+++.++.++...+++++
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567777777777654100 124567777777777765 566777777777766655433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=67.35 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
++.+++.+|.++.. .+++++|+.+|++++.. +++.+++++|.++...+++++|+.+|++++...+
T Consensus 8 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------- 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------- 74 (91)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 57789999999999 89999999999999886 4899999999999999999999999999998866
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHR 204 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~ 204 (331)
+++.++.++|.++..
T Consensus 75 ------------~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 75 ------------NNAEAKQNLGNAKQK 89 (91)
T ss_dssp ------------TCHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHh
Confidence 589999999998853
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-07 Score=89.63 Aligned_cols=165 Identities=7% Similarity=-0.056 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK----------KEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQA 186 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a 186 (331)
.-.++|++++.+++..+ +..+++..+.++...++ +++++.+|.+++..++
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p------------------ 104 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP------------------ 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT------------------
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC------------------
Confidence 44568999999999875 89999999999988766 7888888888887766
Q ss_pred HHCCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-
Q 020091 187 SIAGHVRAQYQLALCLHRGRGVDF--NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 261 (331)
Q Consensus 187 ~~~~~~~a~~~lg~~y~~G~g~~~--d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 261 (331)
.+..++++-+.++.. .+ ++++++.++.++++. .+..|+++.++++..-. ..++++++++.++++.
T Consensus 105 ---K~y~aW~hR~w~l~~----l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~---~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 105 ---KSYGTWHHRCWLLSR----LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA---VAPAEELAFTDSLITRN 174 (567)
T ss_dssp ---TCHHHHHHHHHHHHT----CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC---CCHHHHHHHHHTTTTTT
T ss_pred ---CCHHHHHHHHHHHHH----cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC---CChHHHHHHHHHHHHHC
Confidence 589999999999987 44 789999999999876 68999999999986621 2789999999999887
Q ss_pred -CCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhch
Q 020091 262 -GHGKAQLEHGLGLFTE--------------GEMMKAVVYLELATRA--GETAADHVKNVILQQLSA 311 (331)
Q Consensus 262 -~~~~a~~~Lg~~~~~~--------------~~~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~ 311 (331)
.+..+++..+.++... +.+++|+.++.+|+.. ++..+.+.++.++....+
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 6789999999988763 5689999999999986 467888888888876654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=69.10 Aligned_cols=77 Identities=18% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 020091 123 KALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLAL 200 (331)
Q Consensus 123 ~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 200 (331)
+|+.+|++++... ++.+++++|.+|...|++++|+.+|++++...+ .++.+++++|.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~ 61 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---------------------TYSVAWKWLGK 61 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---------------------CcHHHHHHHHH
Confidence 4677777777653 777788888888888888888888887777655 46777788888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 201 CLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 201 ~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
+|.. .+++++|+.+|+++++
T Consensus 62 ~~~~----~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 62 TLQG----QGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHH
Confidence 8776 6778888888887765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-06 Score=76.69 Aligned_cols=170 Identities=10% Similarity=-0.034 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHH
Q 020091 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQ 195 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 195 (331)
...++|+.++.+++..+ +..+++..+.++...+ ++++++.++.+++..++ .+..++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP---------------------Kny~aW 126 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL---------------------KSYQVW 126 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC---------------------CCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---------------------CcHHHH
Confidence 45568999999999875 8999999999998887 69999999999998877 589999
Q ss_pred HHHHHHHhcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC----ccccHHHHHHHHHHHHHc--CCHHH
Q 020091 196 YQLALCLHRGRGVDF-NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG----LPLSHRQARKWMKRAADC--GHGKA 266 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~-d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g----~~~~~~~A~~~~~~a~~~--~~~~a 266 (331)
+..+.++... .+ ++++++.++.++++. .+..+++..++++..-.. ......+++.++.++++. .+-.|
T Consensus 127 ~hR~wlL~~l---~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 127 HHRLLLLDRI---SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHHHHH---CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHh---cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 9999998762 13 789999999999876 678999999988854110 011234999999999887 57899
Q ss_pred HHHHHHHHhccCC-------HHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhchh
Q 020091 267 QLEHGLGLFTEGE-------MMKAVVYLELATRA--GETAADHVKNVILQQLSAT 312 (331)
Q Consensus 267 ~~~Lg~~~~~~~~-------~~~A~~~~~~A~~~--~~~~a~~~l~~~~~~l~~~ 312 (331)
+.+.+.++...+. +++++.++.+++.. ++..+...+..++......
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999988886 79999999999976 5688888888888776655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-07 Score=64.48 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...+++++|+.+|++++...+ +++.+++++|.+|.. .+++++|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~----~~~~~~A 62 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------NNAEAWYNLGNAYYK----QGDYDEA 62 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHH----HhhHHHH
Confidence 355677788888777888888888877777654 467777788887776 6778888
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
+.+|+++++. ++..++.++|.++.
T Consensus 63 ~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 63 IEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8888887664 56777777777764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=66.92 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++++||.+|...|++++|+.+|++++.
T Consensus 6 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555554 455555555555554432 444555555555555555555555444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.7e-08 Score=70.32 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=42.5
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDA 143 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~l 143 (331)
.+..+...+..|++++|+..+.+.++..++ ++.+++.||.+|.. .+++++|+.+|+++++. ++..+...+
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 344444455666666666666666665443 45566666666666 66666666666666643 344444444
Q ss_pred HHHH
Q 020091 144 GLMY 147 (331)
Q Consensus 144 g~~~ 147 (331)
..++
T Consensus 84 ~~~l 87 (100)
T 3ma5_A 84 QDAK 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.6e-07 Score=66.03 Aligned_cols=76 Identities=14% Similarity=-0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 020091 214 EAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 214 ~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
+|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|++++.. .+..+++.||.+|...|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466677777654 567777777777755 34777777777777765 4567888888888888888888888888
Q ss_pred HHHc
Q 020091 290 ATRA 293 (331)
Q Consensus 290 A~~~ 293 (331)
+++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.9e-07 Score=65.93 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
++.+++.+|.++...|++++|+.+|++++...+ +++.+++++|.+|.. .+++++|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~lg~~~~~----~g~~~~A 57 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---------------------QNPVGYSNKAMALIK----LGEYTQA 57 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHH----hcCHHHH
Confidence 356777888888888888888888888887765 467888888888876 6778888
Q ss_pred HHHHHHHHHC--CC------HHHHHHHHHHHh
Q 020091 216 ARWYLRAAEG--GY------VRAMYNTSLCYS 239 (331)
Q Consensus 216 ~~~~~~A~~~--~~------~~a~~~lg~~y~ 239 (331)
+.+|+++++. ++ ..+++.+|.++.
T Consensus 58 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 58 IQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 8888888765 33 556666666664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-06 Score=75.24 Aligned_cols=180 Identities=10% Similarity=-0.032 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 84 ASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
++..+.++.... .....+.+.+|.++.. .+++++|+.++.+.+.. ++.+++..++.++...|+.+.|.+.
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 443334444332 2456777899999999 89999999999999876 4788999999999999999999999
Q ss_pred HHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH--Hh-cCCCCCCCHHHHHHHHHHHHHCC-C---HHHHH
Q 020091 160 YRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC--LH-RGRGVDFNLQEAARWYLRAAEGG-Y---VRAMY 232 (331)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~--y~-~G~g~~~d~~~A~~~~~~A~~~~-~---~~a~~ 232 (331)
+++.....++. -| ++.....+|+.. .. .| .+++.+|+..|+++++.. + ...++
T Consensus 159 l~~~~~~~~d~----------~~-------~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLl 218 (310)
T 3mv2_B 159 FDNYTNAIEDT----------VS-------GDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp HHHHHHHSCHH----------HH-------HHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHhcCccc----------cc-------cchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHH
Confidence 98876664200 00 013444555533 22 12 247999999999988763 3 33444
Q ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHH
Q 020091 233 NTSLCYSFGEGLPLSHRQARKWMKRAAD------------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 298 (331)
Q Consensus 233 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~------------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 298 (331)
+ ++.. .+++++|...++.... ..++++..++..+....|+ +|.++++++.+..+..+
T Consensus 219 n---~~~~----~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 219 N---LHLQ----QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp H---HHHH----HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred H---HHHH----cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 5 5544 4499999999986543 4578888888888888887 89999999998875443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.1e-06 Score=82.17 Aligned_cols=131 Identities=8% Similarity=-0.091 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C--CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 267 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 267 (331)
.++..+..+..+ .++.+.|...|.+|.+. + ....+...+.+-..- .++.+.|...|+++++. .++..+
T Consensus 435 ~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~---~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 435 YVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI---SKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT---TSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCchHHH
Confidence 345555555544 45689999999999876 3 344555556555432 23689999999999886 455666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRAGE---TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~~~---~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..++.+....|+.+.|..+|++|+...+ .........+.-....|+.+.+..+.++..+..|.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6777777788999999999999998765 23333333344445567888888888888877775
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=64.81 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
.+.-|+.||..++. .+++.+|+.||++|++. ..+..+..||.++.+.|++++|+.++++++.+.|
T Consensus 4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 46789999999999 99999999999999874 2577899999999999999999999999998877
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-06 Score=79.40 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=100.3
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCC---CCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--CH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRP---LRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--ST 137 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~~ 137 (331)
.+.....+|++++|+.++.+.++.... ..| +.++.+||.+|.. .|++++|..+|+++++. | ||
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 334456889999999999888876543 224 4579999999999 89999999999999865 3 55
Q ss_pred H---HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH---HHHHHHHHHhcCCCCCCC
Q 020091 138 L---AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR---AQYQLALCLHRGRGVDFN 211 (331)
Q Consensus 138 ~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---a~~~lg~~y~~G~g~~~d 211 (331)
. ++.+||.+|...|++++|+.+|++|+++ +++..-.+++. ...+|+.++.. .+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i----------------~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~ 450 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI----------------LLVTHGPSHPITKDLEAMRMQTEME----LRM 450 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHTCTTSHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------HHHHhCCCChHHHHHHHHHHHHHHH----HHH
Confidence 4 5789999999999999999999988754 33333345654 44678888865 667
Q ss_pred HHHHHHHHHHHHH
Q 020091 212 LQEAARWYLRAAE 224 (331)
Q Consensus 212 ~~~A~~~~~~A~~ 224 (331)
+.+|...|+++-+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988854
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.4e-06 Score=78.87 Aligned_cols=87 Identities=8% Similarity=-0.075 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
.|++++|+.+|+++.+. .|+ .++.+||.+|...|++++|+.+|+++++. +++..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------~~~~l 385 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------YMKLY 385 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------HHHHc
Confidence 79999999999999864 254 46789999999999999999999887754 33444
Q ss_pred HCCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 188 IAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 188 ~~~~~---~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
-.+++ .++++||.+|.. ++++++|+.+|++|++
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWH----AGHIEVGHGMICKAYA 421 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 34554 467899999987 7889999999999975
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=63.28 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL-AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 105 ~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
+.+|.++.. .+++++|+.+|+++++.. ++. +++++|.+|...|++++|+.+|++++..++.
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 567888888 899999999999998874 788 9999999999999999999999999998774
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-06 Score=61.69 Aligned_cols=87 Identities=9% Similarity=-0.144 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK-AQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQ 308 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~ 308 (331)
+..|.++.. .+++++|+.+|++++.. .+.. +++.+|.+|...|++++|+.+|+++++.++........
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 445566654 44777888888877765 3556 77888888888888888888888888776543322111
Q ss_pred hchhcHHHHHHHHHhhhcCCCC
Q 020091 309 LSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 309 l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
..+.++...+++.....|+
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHC
T ss_pred ---HHHHHHHHHHHHHhccCcc
Confidence 4455666666665544443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-05 Score=59.37 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHH
Q 020091 230 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAA 298 (331)
Q Consensus 230 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a 298 (331)
-++.||..++. .+++..|+.||++|... ...+.+..||.+++..|++++|+.++++|++.. +..+
T Consensus 7 dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 7 DCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34455555544 33555555555555432 235677899999999999999999999998765 4566
Q ss_pred HHHHHHHHh
Q 020091 299 DHVKNVILQ 307 (331)
Q Consensus 299 ~~~l~~~~~ 307 (331)
..|+..+..
T Consensus 83 ~~n~~~~~~ 91 (104)
T 2v5f_A 83 NGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 666664433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.8e-05 Score=58.36 Aligned_cols=100 Identities=11% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC----CHHHHHHHHHHHhccCCHHHH
Q 020091 210 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----HGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~~~~~~~A 283 (331)
.+...+.+-|.+..+. .+..+.+++|+++.+ ...+.+..+++..|+...+.+ +.+..|+||..++..|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 3466777788887774 468899999999976 233558889999999998876 357889999999999999999
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHhhhc
Q 020091 284 VVYLELATRAGE--TAADHVKNVILQQLS 310 (331)
Q Consensus 284 ~~~~~~A~~~~~--~~a~~~l~~~~~~l~ 310 (331)
..+++++++..+ .+|......+...+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999998754 777777666665553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00011 Score=66.22 Aligned_cols=140 Identities=11% Similarity=-0.112 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--CCC-CCCCHHHHHH-HHHHHH---
Q 020091 151 DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR--GRG-VDFNLQEAAR-WYLRAA--- 223 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~--G~g-~~~d~~~A~~-~~~~A~--- 223 (331)
.++.+|+.+|++|++++| +++.++..++.+|.. +.+ ...+...++. .++.+.
T Consensus 213 ~~~~~A~~l~e~Al~lDP---------------------~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSP---------------------EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp HHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 345777888888877766 688888888877742 111 1111222222 222221
Q ss_pred -HCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHH
Q 020091 224 -EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHV 301 (331)
Q Consensus 224 -~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 301 (331)
...++.++..++.++.. ..++++|+.++++|+..+ +..++..+|.++...|+.++|+..|++|+..++....+
T Consensus 272 ~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~- 346 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL- 346 (372)
T ss_dssp GGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH-
T ss_pred cCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH-
Confidence 13567777777776643 349999999999999884 45667789999999999999999999999998765432
Q ss_pred HHHHHhhhchhcHHHH
Q 020091 302 KNVILQQLSATSRDRA 317 (331)
Q Consensus 302 l~~~~~~l~~~~~~~a 317 (331)
-.........+++..
T Consensus 347 -~~~~~l~F~sn~~~i 361 (372)
T 3ly7_A 347 -YWIENGIFQTSVPYV 361 (372)
T ss_dssp -HHHHHSSSCCCHHHH
T ss_pred -HHHhCceeecchhhh
Confidence 233333344444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-05 Score=73.38 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHhC-----C--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-----G--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-----~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
.+++++|+.+|+++.+. | |+ .++.+||.+|...|++++|+.+|+++++. +++..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------~~~~l 374 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP----------------YSKHY 374 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHHHS
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----------------HHHHc
Confidence 57999999999999864 2 54 45789999999999999999999988754 33333
Q ss_pred HCCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 188 IAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 188 ~~~~~---~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
-.+++ ..+++||.+|.. ++++++|+.+|++|++
T Consensus 375 G~~Hp~~a~~l~nLa~~~~~----qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 PVYSLNVASMWLKLGRLYMG----LENKAAGEKALKKAIA 410 (433)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence 33455 458899999987 7899999999999976
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-05 Score=55.58 Aligned_cols=71 Identities=11% Similarity=-0.094 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
..++..+..+|.++.... .....++|..+|++|+..+ ++.+.+.||..++..|++++|+.+|+++++..++
T Consensus 3 p~~~~~~~~~a~al~~~~-~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLH-KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTT-TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 458899999998886421 1344899999999999875 9999999999999999999999999999998776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.4e-05 Score=70.31 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=72.5
Q ss_pred ccCCchHHHhHHHHHHHHHHhCC---CCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--CHH---
Q 020091 75 SFTLPQLRAASLVCKSWNDALRP---LRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--STL--- 138 (331)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~---~~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~~~--- 138 (331)
.-..|++++|+.++.+.++.... ..| +.++.+||.+|.. .|++++|+.+|+++++. | ||+
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 34568899999999888775432 234 3578899999999 89999999999999864 3 554
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
.+++||.+|...|++++|+.+|++|+++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0012 Score=64.76 Aligned_cols=200 Identities=6% Similarity=-0.140 Sum_probs=148.6
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHH-HHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHH
Q 020091 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKAL-DSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISL 159 (331)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~-~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~ 159 (331)
....+|.+.+...+. ++..++..+.++.. .++.++|. ..|++|+..- +...++.++.+....+++++|...
T Consensus 327 Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF--APEIWFNMANYQGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344567777776554 78999999999887 67788997 9999999753 556677888888889999999999
Q ss_pred HHHHHHcC-----------CC-----------CC-----------CccCHHHHHHHHHHHHHC-C--CHHHHHHHHHHHh
Q 020091 160 YRQAAVLG-----------DP-----------AA-----------QPANAEEAVKLLYQASIA-G--HVRAQYQLALCLH 203 (331)
Q Consensus 160 ~~~a~~~~-----------~~-----------~~-----------~~~~~~~A~~~~~~a~~~-~--~~~a~~~lg~~y~ 203 (331)
|++++... +. .. ..++.+.|..+|.+|.+. . ....+...+.+-.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99998742 21 11 457789999999999875 3 3556666666554
Q ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhc
Q 020091 204 RGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-----GKAQLEHGLGLFT 276 (331)
Q Consensus 204 ~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~~~ 276 (331)
. ..++.+.|...|.++++. .++..+...+..... .++.+.|..+|++|+.... ...+..+..+-..
T Consensus 481 ~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 481 H---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp T---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred H---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4 246689999999999885 555555555554433 3489999999999998744 2344455555566
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 020091 277 EGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 277 ~~~~~~A~~~~~~A~~~~~ 295 (331)
.|+.+.+...++++.+.-+
T Consensus 554 ~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp TCCSHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 8999999999999987643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.005 Score=58.18 Aligned_cols=156 Identities=8% Similarity=-0.086 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCC---C
Q 020091 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAG---H 191 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 191 (331)
.|+.++|++.|.+..+.| +..++..|=..+...+.. .......+.++|..+|.+....| +
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~--------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA--------------TESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC--------------SSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch--------------hhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 789999999999998887 555555554444443210 00012334555555555554443 6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGK 265 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 265 (331)
...+..|-..|.. .++.++|.++|++..+.| +...+..|-..|.. .++.++|.+.|..-.+.| +..
T Consensus 105 ~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 105 EATFTNGARLAVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHH
Confidence 6777777777765 688999999999998875 66777777777765 449999999999988875 566
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 266 AQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 266 a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
.+..|-..|...|+.++|...|++.-+.+-
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 777888889999999999999999987763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00013 Score=63.31 Aligned_cols=106 Identities=11% Similarity=-0.050 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhc-----CCCHHHHHHHHH
Q 020091 98 LREAMVLLRWGKRFKH-------GRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWE-----MDKKEAAISLYR 161 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~-------g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~-----~~~~~~A~~~~~ 161 (331)
..++++++.+|.+... |.|......+|...+++|++++ +..++..||.+|.. +|+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3478888888877743 2345566788999999999886 45688999999988 589999999999
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 226 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~ 226 (331)
+|+++++. ++..+.+.+|..+.. ..+|+++|..++++|+...
T Consensus 229 rAL~LnP~--------------------~~id~~v~YA~~l~~---~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 229 HLTRYCSA--------------------HDPDHHITYADALCI---PLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHCCT--------------------TCSHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCC--------------------CCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHcCC
Confidence 99888763 358899999998865 1488999999999998753
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00022 Score=61.75 Aligned_cols=108 Identities=10% Similarity=-0.050 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCC-ccccHHHHHHHHH
Q 020091 189 AGHVRAQYQLALCLHR-------GRGVDFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFGEG-LPLSHRQARKWMK 256 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~-------G~g~~~d~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g~g-~~~~~~~A~~~~~ 256 (331)
.+++++++..|..... |.+......+|...+++|++.+ +..++..||.+|..--+ .-.+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3688899988876532 3355677889999999999874 35689999999976210 1249999999999
Q ss_pred HHHHcC---CHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCH
Q 020091 257 RAADCG---HGKAQLEHGLGLFT-EGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 257 ~a~~~~---~~~a~~~Lg~~~~~-~~~~~~A~~~~~~A~~~~~~ 296 (331)
+|++.+ +.++.+.+|..+.. .++.++|..++++|+...+.
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999873 48999999999888 59999999999999987544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00017 Score=66.97 Aligned_cols=87 Identities=8% Similarity=-0.147 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS 187 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~ 187 (331)
.+++++|+..|+++++. .|+ .++.+||.+|...|++++|+.+|++++.. +++..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i----------------~~~~l 363 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP----------------YRIFF 363 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHHHS
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------HHHHc
Confidence 47999999999999865 244 46789999999999999999999988754 33443
Q ss_pred HCCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 188 IAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 188 ~~~~~---~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
-..++ ..+++||.+|.. ++++++|+.+|++|++
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~----~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLH----QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 34554 458899999987 7899999999999976
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=56.69 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRK---NLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~---~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
..+..+.|++|.++.+ .+ +.++++..|+..++.+ +.+++|+||..|++.+++++|+.+++++++..|.
T Consensus 29 ~~~~~~~F~ya~~Lv~----S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVR----SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp CCCHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4589999999999988 55 7779999999999877 4679999999999999999999999999999774
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0008 Score=60.50 Aligned_cols=151 Identities=11% Similarity=-0.048 Sum_probs=101.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 020091 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (331)
Q Consensus 90 ~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (331)
+..+..+...++--+|.-|.-+... +...+..+|+.+|++|++.. ++.++..++.+|... .. .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~-~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------~~------~~ 250 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLH-GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------HS------QH 250 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------HH------HS
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------hc------cC
Confidence 4455566655666777777766552 33566799999999999874 888888888888521 00 00
Q ss_pred CCCCCccCHHHHHH-HHHHH----HHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcC
Q 020091 168 DPAAQPANAEEAVK-LLYQA----SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFG 241 (331)
Q Consensus 168 ~~~~~~~~~~~A~~-~~~~a----~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g 241 (331)
+ . ......++. .++.+ ....++.++..++.++.. .+++++|+.++++|+..+ +..++..+|.++..
T Consensus 251 ~-~--~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~- 322 (372)
T 3ly7_A 251 P-L--DEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM- 322 (372)
T ss_dssp C-C--CHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred C-C--chhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-
Confidence 0 0 000111111 11111 123578888888887764 688999999999998874 45566788999865
Q ss_pred CCccccHHHHHHHHHHHHHcCCHH
Q 020091 242 EGLPLSHRQARKWMKRAADCGHGK 265 (331)
Q Consensus 242 ~g~~~~~~~A~~~~~~a~~~~~~~ 265 (331)
.++.++|.+.|.+|...+...
T Consensus 323 ---~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 323 ---KGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp ---TTCHHHHHHHHHHHHHHSCSH
T ss_pred ---CCCHHHHHHHHHHHHhcCCCc
Confidence 449999999999999986543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00021 Score=51.17 Aligned_cols=70 Identities=7% Similarity=-0.062 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 226 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.++..+..+|.++....+ ....++|..+|++|+.. .++.+.+.||..++..|++++|+.+|+++++.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777777777743322 23578888888888776 56888899999999999999999999999887765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=67.81 Aligned_cols=94 Identities=14% Similarity=-0.018 Sum_probs=74.4
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCC---CCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC-----C--
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRP---LRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G-- 135 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~-----~-- 135 (331)
+..+.....+|++++|+..+.+.++.... ..| +.++.+||.+|.. .|++++|+.++++++.. |
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCC
Confidence 34444456778999999888877754322 224 4578999999999 89999999999999864 3
Q ss_pred CHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 020091 136 STL---AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (331)
Q Consensus 136 ~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (331)
+|. .+++||.+|...|++++|+.+|++|+++
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 554 5789999999999999999999988754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0096 Score=56.22 Aligned_cols=167 Identities=12% Similarity=0.009 Sum_probs=120.7
Q ss_pred CHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CC----CCC
Q 020091 136 STLAM-VDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR-GR----GVD 209 (331)
Q Consensus 136 ~~~a~-~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-G~----g~~ 209 (331)
.|++. ..+=..+.+.|+.++|+.+|.+....|-. -+...+..|=.+|.. |. ...
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~--------------------pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ--------------------LSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC--------------------CCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------------CCHhHHHHHHHHHHhCCchhhhhhc
Confidence 45543 33335566778888888888887766532 255566655555543 22 123
Q ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCHHHH
Q 020091 210 FNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKA 283 (331)
Q Consensus 210 ~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A 283 (331)
++.++|.+.|.+....| +...+..|-..|.. .++.++|..+|++-...| +...+..|-..|...|+.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 46899999999988876 67778888777766 459999999999988775 567777788888999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhhhchhcHHHHHHHHHhhhc
Q 020091 284 VVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRA 326 (331)
Q Consensus 284 ~~~~~~A~~~~~-~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~ 326 (331)
...|+...+.|- ++....-..+......++.++|.+++++.++
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 999999998873 3333344455556677888999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0051 Score=46.30 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH----HHHHHHHHHHhccCCHHHHHH
Q 020091 212 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLGLFTEGEMMKAVV 285 (331)
Q Consensus 212 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~~~~~~~~~~A~~ 285 (331)
.....+-|.++... ....+.++++|++.+. ..+.+..+++..++.....+++ +..|.||..+++.|+|++|..
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55666777777664 4588999999999663 3366777899999998877643 567899999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHhhhch
Q 020091 286 YLELATRAG--ETAADHVKNVILQQLSA 311 (331)
Q Consensus 286 ~~~~A~~~~--~~~a~~~l~~~~~~l~~ 311 (331)
+.+..++.. +.+|..+...+...+.+
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999875 57888777777665544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.96 E-value=0.085 Score=49.55 Aligned_cols=45 Identities=9% Similarity=-0.205 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+.....|++++. +..+..++..+..+.. .++.++|...|.+|+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC
Confidence 345567777776 4567888888887765 67888999999988765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.017 Score=43.63 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHV 301 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~ 301 (331)
.+.+.++++|++.+... ..+..+++..++.....+. .+..+.||..+++.|++++|..+.+..++. ++.+|..+
T Consensus 39 s~qt~F~yAw~Lv~S~~-~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 57888999999876543 5678899999988876643 567899999999999999999999999876 57888888
Q ss_pred HHHHHhhhchh
Q 020091 302 KNVILQQLSAT 312 (331)
Q Consensus 302 l~~~~~~l~~~ 312 (331)
...+...+.++
T Consensus 118 k~~Ie~ki~kd 128 (134)
T 3o48_A 118 KSMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77777766544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.019 Score=45.24 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=70.0
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----- 135 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~----- 135 (331)
.+.....+++.+.++.|+.++..+.....+..+ ..+++.+|..++. .++|.+|..+|++|+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHHhc
Confidence 355556677788899887777665555433333 3578999999999 899999999999986431
Q ss_pred C----------------------HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 136 S----------------------TLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 136 ~----------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
. .+..|.++.||.+.++.++|+..++..
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 157799999999999999999987653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.44 E-value=0.078 Score=49.80 Aligned_cols=161 Identities=7% Similarity=-0.097 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-------CccCHHHHH-HHHHHH--HH
Q 020091 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------QPANAEEAV-KLLYQA--SI 188 (331)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~A~-~~~~~a--~~ 188 (331)
.......|++++.. ..+..++..+..+...|+.++|...|++|+.. |... .....++.. .++... .+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 45678899999885 47889999999999999999999999999999 4432 000000110 111110 00
Q ss_pred -------C--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 189 -------A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 189 -------~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
. .....+...+..... .++.+.|...|.+| ... ....+...+.+-.. ..++.+.|...|++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r----~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLK----KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSS 345 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHH
Confidence 0 012344555555544 35689999999999 432 23333333433322 12378999999999
Q ss_pred HHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 258 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 258 a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
++.. +.++-+..++......|+.+.|...|+++
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 34555556677777889999999999987
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.059 Score=40.45 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
....+.|.++..+.+. ....+..+++..++.....+.+ +.+|.||..+++.|++++|..+++..++..|.
T Consensus 33 ~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 5789999999999871 2233445599999998887744 68899999999999999999999999998774
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.049 Score=41.68 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHH
Q 020091 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADH 300 (331)
Q Consensus 226 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 300 (331)
-...+.|+++|++..... ..+..+++..++.....+. .+..|.||..+++.|+|++|..+.+..++. ++.+|..
T Consensus 37 vs~~t~F~YAw~Lv~S~~-~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 467888999999876443 6678899999998887543 567799999999999999999999999987 5677877
Q ss_pred HHHHHHhhhch
Q 020091 301 VKNVILQQLSA 311 (331)
Q Consensus 301 ~l~~~~~~l~~ 311 (331)
+...+...+.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.067 Score=42.10 Aligned_cols=117 Identities=10% Similarity=-0.026 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhC--CCH---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHH---HH
Q 020091 118 RKNLDKALDSFLKGAAR--GST---------LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVK---LL 183 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~---------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~---~~ 183 (331)
.+-|+.|+-....++.. .++ .+++.+|..++..+++..|...|++|+.........+...-.+. -+
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~ 112 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAST 112 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCC
Confidence 47888888888876543 223 37889999999999999999999999876332111111000000 00
Q ss_pred HHHHH-CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Q 020091 184 YQASI-AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA-AEGGYVRAMYNTSLCY 238 (331)
Q Consensus 184 ~~a~~-~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A-~~~~~~~a~~~lg~~y 238 (331)
....+ ....+..|.++.||.. .+++.+|+..++.. .+.-.+..-..||.+|
T Consensus 113 p~s~~~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 113 PQSQCLPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----CCCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 00001 1234677888888887 77888888887765 4456777777777776
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.31 Score=48.03 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHH
Q 020091 189 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 268 (331)
Q Consensus 189 ~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 268 (331)
..++..+.+||.++.. .++++.|+++|.++ ++......|-.. .++.++....-+.+...|.....+
T Consensus 678 ~~~~~~W~~la~~al~----~~~~~~A~~~y~~~---~d~~~l~~l~~~-------~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQ----RFNFKLAIEAFTNA---HDLESLFLLHSS-------FNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH---TCHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc---cChhhhHHHHHH-------cCCHHHHHHHHHHHHHcCchHHHH
Confidence 3678899999999987 78999999999987 555554444333 225565555556666666554443
Q ss_pred HHHHHHhccCCHHHHHHHHHH
Q 020091 269 EHGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~ 289 (331)
.+ +...|++++|++.|..
T Consensus 744 ~~---~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 744 NA---YWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HH---HHHHTCHHHHHHHHHH
T ss_pred HH---HHHcCCHHHHHHHHHH
Confidence 32 4457777777777643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.096 Score=40.52 Aligned_cols=119 Identities=17% Similarity=0.109 Sum_probs=82.6
Q ss_pred HHHCCCHHHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHHCC----------CHHHHHHHHHHHhcCCCccccHH
Q 020091 186 ASIAGHVRAQYQLALCLHRGRGVDFNL------QEAARWYLRAAEGG----------YVRAMYNTSLCYSFGEGLPLSHR 249 (331)
Q Consensus 186 a~~~~~~~a~~~lg~~y~~G~g~~~d~------~~A~~~~~~A~~~~----------~~~a~~~lg~~y~~g~g~~~~~~ 249 (331)
.+.+.+++.+.......+. .+|. ++-++.|++|+..- ++.-+...+... . .+|.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-e----i~D~d 77 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-A----IQEPD 77 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-H----HHCGG
T ss_pred eeCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-H----hcCHH
Confidence 4556889999988888875 3555 77889999997642 223333333332 1 36999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHhhhchhc
Q 020091 250 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATS 313 (331)
Q Consensus 250 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~------~~a~~~l~~~~~~l~~~~ 313 (331)
+|...|+.+... ..+..+...|..-..+|+..+|.+.+.+|+..++ +.|..|+.....++...+
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~~~l~~~e 149 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQKKQLLSEE 149 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTCSCSSCTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCCCeecccc
Confidence 999999999765 3455666667766779999999999999999987 556666665555554443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.41 Score=36.58 Aligned_cols=71 Identities=1% Similarity=-0.124 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
...+.+.|+++.++... ....|..+++..++.....+ .-+.+|.||..+++.|++++|..+.+..++..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S-~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45788899998887762 12445668999999888653 5688999999999999999999999999999774
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.26 Score=37.16 Aligned_cols=72 Identities=1% Similarity=-0.123 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
...+.+.|+++.+..+. ....|..+++..++.....+ .-+.+|.||..+++.|++++|..+.+..++..|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S-~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34678888888777662 12446678999999888754 46789999999999999999999999999987743
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.34 Score=45.39 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
.+..||++.+. ...+..|..||.+|+... +...+..||.+....++.-+|+-+|.+++....|
T Consensus 154 ~l~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 154 CLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 45667888877 567788888888888763 6677888888888888888888888887765443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.53 E-value=2.6 Score=41.35 Aligned_cols=80 Identities=15% Similarity=0.008 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQL 198 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 198 (331)
++++.|.+.. -...++..+..||..+...++++.|+.+|.++ +|+..+..+|.. .++.+....+
T Consensus 666 ~~~~~A~~~~---~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~----------~d~~~l~~l~~~---~~~~~~~~~~ 729 (814)
T 3mkq_A 666 GQLTLARDLL---TDESAEMKWRALGDASLQRFNFKLAIEAFTNA----------HDLESLFLLHSS---FNNKEGLVTL 729 (814)
T ss_dssp TCHHHHHHHH---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------TCHHHHHHHHHH---TTCHHHHHHH
T ss_pred CCHHHHHHHH---HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc----------cChhhhHHHHHH---cCCHHHHHHH
Confidence 5666666553 34467888999999999999999999999875 234444444433 3444444455
Q ss_pred HHHHhcCCCCCCCHHHHHHH
Q 020091 199 ALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 199 g~~y~~G~g~~~d~~~A~~~ 218 (331)
+.+... .+++..|...
T Consensus 730 ~~~a~~----~~~~~~A~~~ 745 (814)
T 3mkq_A 730 AKDAET----TGKFNLAFNA 745 (814)
T ss_dssp HHHHHH----TTCHHHHHHH
T ss_pred HHHHHH----cCchHHHHHH
Confidence 544443 3444444444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.18 E-value=4.3 Score=36.66 Aligned_cols=90 Identities=19% Similarity=0.064 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc-----
Q 020091 195 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----- 261 (331)
Q Consensus 195 ~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----- 261 (331)
-..||.+|.. .+++.+|.+.+.+..+. ++ .+.+..-..+|.. .+|..++...|.+|...
T Consensus 102 ~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 102 EARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccCC
Confidence 3488999987 88999999999988652 33 2334455556655 45999999999998543
Q ss_pred CCHHHH----HHHHHHHh-ccCCHHHHHHHHHHHHH
Q 020091 262 GHGKAQ----LEHGLGLF-TEGEMMKAVVYLELATR 292 (331)
Q Consensus 262 ~~~~a~----~~Lg~~~~-~~~~~~~A~~~~~~A~~ 292 (331)
.++..+ ..-|.++. ..++|.+|..+|-.+.+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 234322 34688888 89999999999988864
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.51 Score=44.24 Aligned_cols=76 Identities=22% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
.+..||.+.........|..||.+|+...|. +...++.||.+... .++.-+|+-+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~---------------------~G~~~nqLavla~~----~~~~l~a~y~ 208 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS---------------------NGQPYNQLAILASS----KGDHLTTIFY 208 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------BSHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC---------------------CCchHHHHHHHHhc----ccccHHHHHH
Confidence 4568899988888889999999999988774 56666667766654 4566666666
Q ss_pred HHHHHHC--CCHHHHHHHHHHHh
Q 020091 219 YLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 219 ~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
|.+++.. ..+.|..+|...+.
T Consensus 209 y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 209 YCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhHHHHHHHHHH
Confidence 6666432 45555556655553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.72 E-value=3.1 Score=33.04 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
||++.|.+..+. .++..-|..||..-...|+++-|+.+|+++
T Consensus 19 g~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 19 GNLDAALDEAKK---LNDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TCHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 555555555332 245555556666655555555555555553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.23 E-value=1.1 Score=34.60 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHhCCCH----------HHHHHHHHHHhcCCCHHHHHHHHH
Q 020091 98 LREAMVLLRWGKRFKHGRGVRKNL------DKALDSFLKGAARGST----------LAMVDAGLMYWEMDKKEAAISLYR 161 (331)
Q Consensus 98 ~~~~~a~~~LG~~y~~g~g~~~~~------~~A~~~~~~A~~~~~~----------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (331)
..+++.++..-..... .+|. ++-++.|++|+..=.| .-+...+.. ...+|.++|...|+
T Consensus 10 p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred CCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 3567777666666655 4555 6666777777653211 112222222 22255555555555
Q ss_pred HHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 162 ~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
.++.... ..+..+...+..-.+ +++..+|.+.+.+|+..+.
T Consensus 85 ~a~~~hK---------------------kFAKiwi~~AqFEiR----qgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 85 MARANCK---------------------KFAFVHISFAQFELS----QGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHCT---------------------TBHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhH---------------------HHHHHHHHHHHHHHH----cccHHHHHHHHHHHhccCC
Confidence 5554411 344444444444444 5677777777777776543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.22 E-value=4.7 Score=31.97 Aligned_cols=83 Identities=11% Similarity=-0.108 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHH
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLE 269 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 269 (331)
++..-|..||..... .+|++-|.++|+++ ++...+..|-.+- +|.++=...-+.|...|+....+.
T Consensus 32 ~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~~---~D~~~L~~Ly~~t-------g~~e~L~kla~iA~~~g~~n~af~ 97 (177)
T 3mkq_B 32 NDSITWERLIQEALA----QGNASLAEMIYQTQ---HSFDKLSFLYLVT-------GDVNKLSKMQNIAQTREDFGSMLL 97 (177)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHT---TCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHh---CCHHHHHHHHHHh-------CCHHHHHHHHHHHHHCccHHHHHH
Confidence 678889999998876 78999999999987 5666655554443 266666666667767776665554
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 020091 270 HGLGLFTEGEMMKAVVYLEL 289 (331)
Q Consensus 270 Lg~~~~~~~~~~~A~~~~~~ 289 (331)
. ++..|++++++..|.+
T Consensus 98 ~---~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 98 N---TFYNNSTKERSSIFAE 114 (177)
T ss_dssp H---HHHHTCHHHHHHHHHH
T ss_pred H---HHHcCCHHHHHHHHHH
Confidence 3 4457888888888744
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.83 E-value=15 Score=37.11 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh---CCC----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RGS----TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 90 ~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~---~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
.|+-+..+.+...+...||.++ .++.++++..+.+-.. .++ ..|++-||.++...++ +++.++..
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh------~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~ 436 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIH------KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKN 436 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHT------SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHH
T ss_pred hhhhccchHHHHHHHHHhhhhc------cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHH
Confidence 4555544444455666677776 4455556666555443 222 2355566666544432 45555555
Q ss_pred HHH
Q 020091 163 AAV 165 (331)
Q Consensus 163 a~~ 165 (331)
.+.
T Consensus 437 ~L~ 439 (963)
T 4ady_A 437 IIV 439 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=87.69 E-value=2.9 Score=31.82 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=46.9
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG 144 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg 144 (331)
..+|.-++...++...+. ....+|..++.+|..|.. .++..+|.+++.+|++.|..+|+.+.-
T Consensus 102 v~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~K----lg~~r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILK--NNEVSASILVAIANALRR----VGDERDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp HHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHH----hcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence 345666666555544322 223468999999999999 899999999999999999999987653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.34 E-value=20 Score=31.15 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=43.0
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAM 140 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~ 140 (331)
....+.+....+..|++-+|.+.++. +..-|.. .+++++|++.+...+. .|...+-
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rt----------------l~~Ry~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa 72 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRT----------------IANRYVR----SKSYEHAIELISQGALSFLKAKQGGSG 72 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH----------------HHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHH----------------HHHHHHH----hcCHHHHHHHHHHHHHHHHHCCCcchH
Confidence 44567777778888999999655442 3334445 6889999999887653 4666666
Q ss_pred HHHHHHHh
Q 020091 141 VDAGLMYW 148 (331)
Q Consensus 141 ~~lg~~~~ 148 (331)
..|+..+.
T Consensus 73 ~DLa~llv 80 (312)
T 2wpv_A 73 TDLIFYLL 80 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
|
| >4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* | Back alignment and structure |
|---|
Probab=83.84 E-value=11 Score=27.67 Aligned_cols=36 Identities=8% Similarity=-0.077 Sum_probs=20.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 127 SFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 127 ~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
...+...+|.+......+....-. +.++|+.|+..-
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h 46 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHh
Confidence 344555666666666665444333 666666666543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=81.96 E-value=11 Score=29.72 Aligned_cols=139 Identities=11% Similarity=0.022 Sum_probs=84.2
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW 148 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~ 148 (331)
+-+....+.-.+++.+.-+..-+... .++--..++++..- .|.+..+.-.+ ...+...+.+.-..||.
T Consensus 6 ~~kI~Ks~kY~dYdt~~fLsa~L~~~-----~~eY~lL~~I~Lyy----ngEY~R~Lf~L---~~lNT~Ts~YYk~LCy~ 73 (242)
T 3kae_A 6 IGKICKSIRYRDYETAIFLAACLLPC-----KPEYRMLMSIVLYL----NGEYTRALFHL---HKLNTCTSKYYESLCYK 73 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHH----TTCHHHHHHHH---HTCCBHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHccC-----ChHHHhhhhhhhhh----cchHhHHHHHH---HhcchHHHHHHHHHHHH
Confidence 33444455556777664332222221 22223334555554 68888776554 56788889999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 020091 149 EMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQY-QLALCLHRGRGVDFNLQEAARWYLRAAEGGY 227 (331)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~ 227 (331)
..+|+.+|+..+++.++-.-... .|.+--+..+ -+++++.+-.+ -+|.++.+ .++.++|+.+|..+-....
T Consensus 74 klKdYkkA~~~le~il~~kvd~d--~~~d~~~~~f--fvd~~DkEfFy~l~a~lltq----~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 74 KKKDYKKAIKSLESILEGKVERD--PDVDARIQEM--FVDPGDEEFFESLLGDLCTL----SGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HTTCHHHHHHHHHHHHTTCSBCC--CCCCHHHHTT--SCCTTCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcccccC--ccccccccee--eeccchHHHHHHHHHHHHHH----hcCHHHhhhHhhhhcCCcc
Confidence 99999999999999985422211 1111111111 12345665544 47777776 7899999999999866543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 331 | ||||
| d1klxa_ | 133 | a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He | 7e-10 | |
| d1klxa_ | 133 | a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He | 4e-04 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 2e-07 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 2e-07 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 6e-07 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 2e-05 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 6e-04 |
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Score = 54.4 bits (129), Expect = 7e-10
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 13/132 (9%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEA------------AISLYR 161
G V+K+L KA+ ++K + +K++
Sbjct: 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI-NKQKLFQYLSKACELNSGNGCRF 60
Query: 162 QAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 221
+ + +A + +A L + G+GV N ++A + + +
Sbjct: 61 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 120
Query: 222 AAEGGYVRAMYN 233
A G A
Sbjct: 121 ACRLGSEDACGI 132
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Score = 37.4 bits (85), Expect = 4e-04
Identities = 10/82 (12%), Positives = 25/82 (30%)
Query: 205 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 264
G V +L++A ++Y++A E + + + + + C
Sbjct: 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 61
Query: 265 KAQLEHGLGLFTEGEMMKAVVY 286
E+G + +
Sbjct: 62 GDFYENGKYVKKDLRKAAQYYS 83
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 49.5 bits (116), Expect = 2e-07
Identities = 11/89 (12%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 252
+ L ++ + + +A +++ +A + +N + Y G+G+ + ++A
Sbjct: 3 KELVGLGAKSYKEK----DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA 58
Query: 253 KWMKRAADCGHGKAQLEHGLGLFTEGEMM 281
+ +A D + G ++ +
Sbjct: 59 SFYAKACDLNYSNGCHLLGNLYYSGQGVS 87
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 49.1 bits (115), Expect = 2e-07
Identities = 23/107 (21%), Positives = 49/107 (45%)
Query: 166 LGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225
LG + + + +A K +A + L + ++G+GV+ NL++AA +Y +A +
Sbjct: 8 LGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67
Query: 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL 272
Y + Y G+G+ + +A ++ +A D + + G
Sbjct: 68 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGG 114
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 47.6 bits (111), Expect = 6e-07
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYN 233
+ + L + G GV N ++A + + + G A
Sbjct: 213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 255
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 250
+ H G G N +EA Y +A E +N GEG+ + +Q
Sbjct: 177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ 236
Query: 251 ARKWMKRAADCGHGKAQ 267
A + K+ G A
Sbjct: 237 AIENFKKGCKLGAKGAC 253
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.6 bits (80), Expect = 6e-04
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
+ SLP ++L I + LP+L S VCK W
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.67 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.65 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.51 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.43 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.23 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.22 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.1 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.08 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.04 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.0 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.92 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.91 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.64 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.55 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.38 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.48 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 85.59 | |
| d3bgea1 | 184 | Uncharacterized protein NTHI1458 {Haemophilus infl | 84.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 83.6 |
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.97 E-value=3.7e-30 Score=223.43 Aligned_cols=239 Identities=19% Similarity=0.234 Sum_probs=219.0
Q ss_pred hHHHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 020091 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG 144 (331)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg 144 (331)
|...+......+..+++.+| ..|++++++.+++.+++.||.+|..|.|+.+|+.+|..||++++..+++.++..||
T Consensus 2 p~~~~~lG~~~~~~~d~~~A----~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQA----KKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHH----HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence 44455555667788999999 56777777889999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CCHHHHHHHHHHHHHcCCCCC-------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC
Q 020091 145 LMYWEM----DKKEAAISLYRQAAVLGDPAA-------------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 207 (331)
Q Consensus 145 ~~~~~~----~~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g 207 (331)
.++..+ .+.++|+.+|+++++.+...+ ...+..+++.++.+..+.++..++++||.+|..|.+
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence 999874 689999999999998877665 678899999999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHH
Q 020091 208 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKA 283 (331)
Q Consensus 208 ~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A 283 (331)
...+...+..|++++++.|++.++++||.+|..|.|+.+|+++|+.||+++++.|++.++++||.+|.. .+|+++|
T Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A 237 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQA 237 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred cccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 5599999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 020091 284 VVYLELATRAGETAADHVKNVILQ 307 (331)
Q Consensus 284 ~~~~~~A~~~~~~~a~~~l~~~~~ 307 (331)
+.||++|++.|+..|+..+..+..
T Consensus 238 ~~~~~kAa~~g~~~A~~~l~~l~~ 261 (265)
T d1ouva_ 238 IENFKKGCKLGAKGACDILKQLKI 261 (265)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTCCC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999988776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.94 E-value=3.9e-25 Score=191.41 Aligned_cols=222 Identities=15% Similarity=0.149 Sum_probs=205.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCCCC----
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----DKKEAAISLYRQAAVLGDPAA---- 171 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~~~~~~---- 171 (331)
||.+++.||..++. .+|+++|++||++|++.|++.++++||.+|..+ .++.+|+.+|++++..+.+.+
T Consensus 1 ~p~~~~~lG~~~~~----~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence 68999999999999 899999999999999999999999999999984 799999999999999877665
Q ss_pred ---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Q 020091 172 ---------QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGE 242 (331)
Q Consensus 172 ---------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~ 242 (331)
...+.++|+.+|+++++.|...++..||..+..|.....+...|+.++.++...++..+++.||.+|..+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence 57899999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--hhcHHH
Q 020091 243 GLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLS--ATSRDR 316 (331)
Q Consensus 243 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~--~~~~~~ 316 (331)
+...+...+..|++.+++.+++.++++||.+|.. .+|+++|+.||++|++.|++.++++++.++.... ..+..+
T Consensus 157 ~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~ 236 (265)
T d1ouva_ 157 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ 236 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred CcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHH
Confidence 9999999999999999999999999999999887 6799999999999999999999999999997532 336678
Q ss_pred HHHHHHhhh
Q 020091 317 AMLVVDSWR 325 (331)
Q Consensus 317 a~~~~~~~~ 325 (331)
|...+++..
T Consensus 237 A~~~~~kAa 245 (265)
T d1ouva_ 237 AIENFKKGC 245 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.92 E-value=8.1e-25 Score=169.98 Aligned_cols=132 Identities=20% Similarity=0.175 Sum_probs=122.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHH
Q 020091 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVR 193 (331)
Q Consensus 114 g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 193 (331)
|.||++|+++|+.||++|++.|++.++++||.. ...++++|+.||+++++.|++.
T Consensus 2 G~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~-------------------------~~~~~~~a~~~~~~aa~~g~~~ 56 (133)
T d1klxa_ 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSN-------------------------SQINKQKLFQYLSKACELNSGN 56 (133)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTC-------------------------TTSCHHHHHHHHHHHHHTTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHCCChhhhhhhccc-------------------------cccCHHHHHHHHhhhhcccchh
Confidence 679999999999999999999999999999732 3456777888888888889999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEH 270 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 270 (331)
++++||.+|..|.++.+|+.+|++||++|++.|++.++++||.+|..|.|+++|..+|+.||++|++.|+++++..|
T Consensus 57 a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~l 133 (133)
T d1klxa_ 57 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 133 (133)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC
T ss_pred hhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.7e-22 Score=178.24 Aligned_cols=248 Identities=17% Similarity=0.059 Sum_probs=165.5
Q ss_pred HHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 020091 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (331)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (331)
+...+..|++++|...+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+|.+|..
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh
Confidence 44467789999999999988887654 78999999999999 899999999999998874 88999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC----------------------------------------------------------
Q 020091 150 MDKKEAAISLYRQAAVLGDPAA---------------------------------------------------------- 171 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~---------------------------------------------------------- 171 (331)
.|++++|+..|.++....+...
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 9999999999999887765443
Q ss_pred ---------------------CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcC-CC--------------------
Q 020091 172 ---------------------QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRG-RG-------------------- 207 (331)
Q Consensus 172 ---------------------~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~y~~G-~g-------------------- 207 (331)
..+++++|+.+++++++ ++++.++..+|.+|..- .-
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 239 (388)
T d1w3ba_ 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence 34556666666666543 24455555555555430 00
Q ss_pred ---------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 020091 208 ---------VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL 274 (331)
Q Consensus 208 ---------~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 274 (331)
..+++++|+.+|+++++. +++.+++.+|.+|.. .+++.+|+.+|+++... .....+..+|.++
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 034555555555555543 445555555555544 33556666666655544 3345556666666
Q ss_pred hccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCCC
Q 020091 275 FTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 331 (331)
Q Consensus 275 ~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~ 331 (331)
...|++++|+.+|+++++..+ ..+..+++.++ ...++.++|...+++.++..|.+
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL--QQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH--HTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCC
Confidence 667777777777777766543 33444444443 34456667777777776666653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.9e-20 Score=165.62 Aligned_cols=233 Identities=12% Similarity=0.012 Sum_probs=198.3
Q ss_pred HHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 020091 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (331)
.+..+...+..|++.+|+..+...++..| .++.+++.||.+|.. .+++++|+.+|.++++.. ++.+++.+|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 95 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALAV 95 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHhhhccccccccccccccc
Confidence 35677778999999999999998888755 479999999999999 899999999999999874 8999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC--------------------------CccCHHHHHHHHHHHHHC----CCHHHH
Q 020091 146 MYWEMDKKEAAISLYRQAAVLGDPAA--------------------------QPANAEEAVKLLYQASIA----GHVRAQ 195 (331)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~A~~~~~~a~~~----~~~~a~ 195 (331)
+|...+++++|+..|++++...+... ..+.+.+|+..|.+++.. .++.++
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~ 175 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999998766543 346778899999998864 357889
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 271 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 271 (331)
..+|.++.. .+++++|+.+|++++.. +++.+++.+|.+|.. .+++++|+.+|+++++. +++.++++||
T Consensus 176 ~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg 247 (323)
T d1fcha_ 176 CGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLG 247 (323)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHH----HHHHhhhhcccccccccccccccchhhhhhcccc----cccchhHHHHHHHHHHHhhccHHHHHHHH
Confidence 999999987 78999999999999865 689999999999976 55999999999999876 6789999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcC--CH-----------HHHHHHHHHHhhhchhcH
Q 020091 272 LGLFTEGEMMKAVVYLELATRAG--ET-----------AADHVKNVILQQLSATSR 314 (331)
Q Consensus 272 ~~~~~~~~~~~A~~~~~~A~~~~--~~-----------~a~~~l~~~~~~l~~~~~ 314 (331)
.+|...|++++|+.+|++|++.. +. ....+++..+..+.+.+.
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~ 303 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 303 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999852 22 233445666665555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.86 E-value=2.1e-21 Score=150.39 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=117.0
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHH
Q 020091 172 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 251 (331)
Q Consensus 172 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A 251 (331)
+++|+++|+.||+++++.|++.++++||.. ...|.++|++||++|++.|++.+++.||.+|..|.++++|..+|
T Consensus 5 v~kd~~~A~~~~~kaa~~g~~~a~~~l~~~------~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 5 VKKDLKKAIQYYVKACELNEMFGCLSLVSN------SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHHHHHHTC------TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cccCHHHHHHHHHHHHHCCChhhhhhhccc------cccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHH
Confidence 568999999999999999999999999853 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCHHHHHHH
Q 020091 252 RKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVK 302 (331)
Q Consensus 252 ~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~l 302 (331)
+.||+++++.+++.++++||.+|.. ..|.++|+.||++|++.|+..|+..|
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~l 133 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 133 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHhC
Confidence 9999999999999999999999887 56999999999999999999998753
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=7.2e-18 Score=150.54 Aligned_cols=222 Identities=17% Similarity=0.082 Sum_probs=190.8
Q ss_pred hccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 020091 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (331)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (331)
.....+....+...........+ .++.+++.+|.++.. .+++++|..++++++.. +++.++..+|.++...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 144 LLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cccccchhhhhHHHHHHhhccCc--chhHHHHhhcccccc----cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccc
Confidence 34455556666555566665544 478999999999999 89999999999999876 48899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 020091 152 KKEAAISLYRQAAVLGDPAA-----------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARW 218 (331)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~ 218 (331)
++++|+..|+++....+... ..+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+
T Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~ 293 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDC 293 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHH
T ss_pred cHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 99999999999998877665 678999999999999875 789999999999987 7899999999
Q ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 219 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 219 ~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
|+++... .+...+..+|.+|.. .+++++|+.+|+++++. .++.++++||.+|...|++++|+.+|++|++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 294 YNTALRLCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHhhhccCCccchhhhHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999875 678899999999976 45999999999999876 568899999999999999999999999999875
Q ss_pred --CHHHHHHHHHHHhhh
Q 020091 295 --ETAADHVKNVILQQL 309 (331)
Q Consensus 295 --~~~a~~~l~~~~~~l 309 (331)
+..+..+++.++..+
T Consensus 370 P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 370 PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 577888888887654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.8e-17 Score=144.79 Aligned_cols=219 Identities=13% Similarity=-0.040 Sum_probs=173.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--------
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-------- 171 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-------- 171 (331)
...+..|..+.. .|++++|+.+|+++++.. ++.+++.||.++...|++++|+.+|.+++++.+...
T Consensus 20 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 95 (323)
T d1fcha_ 20 PQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 95 (323)
T ss_dssp SSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccc
Confidence 345789999999 899999999999999985 899999999999999999999999999999987665
Q ss_pred ---CccCHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHC----CCHHHH
Q 020091 172 ---QPANAEEAVKLLYQASIAGHV-----------RAQYQLALCLHRGR--GVDFNLQEAARWYLRAAEG----GYVRAM 231 (331)
Q Consensus 172 ---~~~~~~~A~~~~~~a~~~~~~-----------~a~~~lg~~y~~G~--g~~~d~~~A~~~~~~A~~~----~~~~a~ 231 (331)
..+++++|+..|+++...... ....+++....... ...+.+.+|+..|.+++.. .++.++
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~ 175 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence 678899999999998764211 11111111111000 0134678899999999874 357889
Q ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHh
Q 020091 232 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQ 307 (331)
Q Consensus 232 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~ 307 (331)
..+|.++.. .+++++|+.+|++++.. .+..+++.+|.+|...|++++|+.+|+++++.. +..+..+++.++.
T Consensus 176 ~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 176 CGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHH----HHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999999976 45999999999999876 578899999999999999999999999999864 5667777766665
Q ss_pred hhchhcHHHHHHHHHhhhcCCCC
Q 020091 308 QLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 308 ~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
. .++.++|+..+++.++..|.
T Consensus 252 ~--~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 252 N--LGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp H--HTCHHHHHHHHHHHHHHHHT
T ss_pred H--CCCHHHHHHHHHHHHHhCCc
Confidence 5 56778999999998876554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1e-15 Score=135.18 Aligned_cols=219 Identities=6% Similarity=-0.118 Sum_probs=177.0
Q ss_pred cCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCH
Q 020091 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK 153 (331)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~ 153 (331)
...+.+++|+..+.+.++.-|+ +..+++..|.++... .+++++|+.+|.+++... +..+++++|.++...|++
T Consensus 54 ~~~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l---~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~ 128 (315)
T d2h6fa1 54 QRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSL---QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 128 (315)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HhCCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHh---CcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccH
Confidence 4568889999999999998664 899999999998772 357999999999998874 899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Q 020091 154 EAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAM 231 (331)
Q Consensus 154 ~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~ 231 (331)
++|+.+|.+++++++ .+..+++++|.++.. .+++++|+.+|+++++. .+..++
T Consensus 129 ~eAl~~~~kal~~dp---------------------~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~p~n~~a~ 183 (315)
T d2h6fa1 129 SQELEFIADILNQDA---------------------KNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVW 183 (315)
T ss_dssp TTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhhhhhhhh---------------------cchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHCCccHHHH
Confidence 999999999998877 589999999999987 78899999999999886 679999
Q ss_pred HHHHHHHhcCCC--ccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 020091 232 YNTSLCYSFGEG--LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG----ETAADHVKN 303 (331)
Q Consensus 232 ~~lg~~y~~g~g--~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~----~~~a~~~l~ 303 (331)
+++|.++..... ...++++|+.++.+++.. ++..+++.+|.++.. ...+++...++++.+.. ...+...+.
T Consensus 184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~ 262 (315)
T d2h6fa1 184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLV 262 (315)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHH
Confidence 999999865432 244578999999999887 568899999997654 44688889999887754 344555666
Q ss_pred HHHhhhchhcHHHHHHHHHhhh
Q 020091 304 VILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 304 ~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
.++......+.+.+...+.+..
T Consensus 263 ~~y~~~~~~~~~~~~~~~~ka~ 284 (315)
T d2h6fa1 263 DIYEDMLENQCDNKEDILNKAL 284 (315)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 6665555555555666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.3e-15 Score=129.52 Aligned_cols=168 Identities=13% Similarity=-0.001 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE 177 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 177 (331)
.+.+++.+|.+|.. .|++++|+.+|++|+.. +++.+++++|.+|...|++++|+..|++++...+.
T Consensus 36 ~a~~~~~~G~~y~~----~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------- 103 (259)
T d1xnfa_ 36 RAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-------- 103 (259)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh--------
Confidence 56789999999999 89999999999999987 49999999999999999999999999999998774
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc---------------
Q 020091 178 EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF--------------- 240 (331)
Q Consensus 178 ~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~--------------- 240 (331)
++.+++++|.+|.. .+++++|+.+|+++++. .+......++.++..
T Consensus 104 -------------~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 104 -------------YNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp -------------CTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -------------hhhhHHHHHHHHHH----HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 45555555555544 45555555555555543 223333333332211
Q ss_pred ----------------C-CCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 241 ----------------G-EGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 241 ----------------g-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
+ .........+...+..+... ....++++||.+|...|++++|+.+|++|+...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 167 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 1 00011122222222222221 23456788999999999999999999999987653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.9e-15 Score=129.06 Aligned_cols=194 Identities=5% Similarity=-0.074 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM-DKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
.++++..+|.++.. .+.+++|+..|.+|++.+ +..++++.|.++... +++++|+.+|.++++..+
T Consensus 42 ~~~a~~~~~~~~~~----~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-------- 109 (315)
T d2h6fa1 42 FRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-------- 109 (315)
T ss_dssp HHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHHHh----CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--------
Confidence 35677788999988 789999999999999986 999999999998885 579999999999999877
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHH
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKW 254 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 254 (331)
.+..+++++|.++.. .+++++|+.+|.++++. .+..+++++|+++.. .+++++|+.+
T Consensus 110 -------------~~~~a~~~~~~~~~~----l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~ 168 (315)
T d2h6fa1 110 -------------KNYQVWHHRRVLVEW----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQY 168 (315)
T ss_dssp -------------TCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHH
T ss_pred -------------hhhhHHHHHhHHHHh----hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHH
Confidence 589999999999987 78899999999999875 689999999999976 5589999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhccCC------HHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHHHHHhh
Q 020091 255 MKRAADC--GHGKAQLEHGLGLFTEGE------MMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSW 324 (331)
Q Consensus 255 ~~~a~~~--~~~~a~~~Lg~~~~~~~~------~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~ 324 (331)
|.++++. .+..+++++|.++...+. +++|+.++.++++.. +..+..+++.++..... .++...+++.
T Consensus 169 ~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~---~~~~~~~~~~ 245 (315)
T d2h6fa1 169 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL---SKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG---GGCHHHHHHH
T ss_pred HHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcCh---HHHHHHHHHH
Confidence 9999987 568899999999877664 789999999999875 56777777777655433 3444555555
Q ss_pred hcCCC
Q 020091 325 RAMPS 329 (331)
Q Consensus 325 ~~~~~ 329 (331)
....|
T Consensus 246 ~~l~~ 250 (315)
T d2h6fa1 246 LDLQP 250 (315)
T ss_dssp HHHTT
T ss_pred HHhCC
Confidence 44444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.2e-14 Score=117.26 Aligned_cols=145 Identities=17% Similarity=0.043 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAV 180 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~ 180 (331)
+..+++.|..+.. .+|+++|++.|.++ ...++.+++++|.+|...|++++|+.+|++|+++++
T Consensus 5 ~~~l~~~g~~~~~----~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp------------ 67 (192)
T d1hh8a_ 5 AISLWNEGVLAAD----KKDWKGALDAFSAV-QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------------ 67 (192)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh------------
Confidence 4567788999999 89999999999875 345789999999999999999999999999999877
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHH-HHHHHHHHHhcCCCccccHHHHHHHHHH
Q 020091 181 KLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVR-AMYNTSLCYSFGEGLPLSHRQARKWMKR 257 (331)
Q Consensus 181 ~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~--~~~-a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 257 (331)
.++.+++++|.+|.. .+++++|+..|++|+... +.. .+..+|..+
T Consensus 68 ---------~~~~a~~~~g~~~~~----~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~------------------- 115 (192)
T d1hh8a_ 68 ---------HLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF------------------- 115 (192)
T ss_dssp ---------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC-------------------
T ss_pred ---------hhhhhHHHHHHHHHh----hccHHHHHHHHHHHHHhCccCchHHHHHhhhhc-------------------
Confidence 589999999999987 889999999999998631 110 000011000
Q ss_pred HHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q 020091 258 AADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 296 (331)
Q Consensus 258 a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~ 296 (331)
.....++++++|.++...|++++|+..|++|++....
T Consensus 116 --~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 116 --KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp --EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred --ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 0112457789999999999999999999999887553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.1e-12 Score=110.98 Aligned_cols=181 Identities=14% Similarity=0.005 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCH
Q 020091 119 KNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHV 192 (331)
Q Consensus 119 ~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 192 (331)
...+.|+..+.++... ..+.+++++|.+|...|++++|+..|++++.+.| +++
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p---------------------~~~ 71 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---------------------DMP 71 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------------CCH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC---------------------CCH
Confidence 3455666667776643 2456889999999999999999999999999877 589
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQL 268 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~ 268 (331)
.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++.. +.....
T Consensus 72 ~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 143 (259)
T d1xnfa_ 72 EVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSL 143 (259)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhhhchHHHH----HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH----HhhHHHHHHHHHHHHhhccccHHHHH
Confidence 999999999987 89999999999999875 678999999999976 459999999999998874 345555
Q ss_pred HHHHHHhccCCHHHHHHHHHHH------------------------------------HHc--CCHHHHHHHHHHHhhhc
Q 020091 269 EHGLGLFTEGEMMKAVVYLELA------------------------------------TRA--GETAADHVKNVILQQLS 310 (331)
Q Consensus 269 ~Lg~~~~~~~~~~~A~~~~~~A------------------------------------~~~--~~~~a~~~l~~~~~~l~ 310 (331)
.++.++...+..+.+....... ... ....+.++++.++ ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~--~~ 221 (259)
T d1xnfa_ 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY--LS 221 (259)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH--HH
Confidence 5555444433222222211111 111 1123444555555 45
Q ss_pred hhcHHHHHHHHHhhhcCCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++.++|...+++.+..+|.
T Consensus 222 ~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 222 LGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp TTCHHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 67889999999999888885
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3e-12 Score=111.94 Aligned_cols=241 Identities=13% Similarity=0.039 Sum_probs=164.2
Q ss_pred HHHhccCCchHHHhHHHHHHHHHHhCCCCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C----CHHH
Q 020091 71 KIAASFTLPQLRAASLVCKSWNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLA 139 (331)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a 139 (331)
.+...+..|++++|+..+.+.++..++... ..++..+|.+|.. .|++++|+.+|++++.. + ...+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344467889999999999988887765432 4588899999999 89999999999999764 2 2356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----C---------------CccCHHHHHHHHHHHHHC-------CCHH
Q 020091 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPA----A---------------QPANAEEAVKLLYQASIA-------GHVR 193 (331)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~----~---------------~~~~~~~A~~~~~~a~~~-------~~~~ 193 (331)
+.+++.++...+++.+|+..+.+++...... . ..++++++..++.++... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 7889999999999999999999887642111 1 567788888888887642 2345
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-----CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-- 262 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 262 (331)
+...++..+.. .+++.++..++.++... + ...+...+|.++.. .++.++|..+++++....
T Consensus 174 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~ 245 (366)
T d1hz4a_ 174 CLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFA 245 (366)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhccc
Confidence 66667776665 56777777777777542 1 12344556666644 337777777777776541
Q ss_pred ----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhhhchhcHHHHHHHHHhhh
Q 020091 263 ----HGKAQLEHGLGLFTEGEMMKAVVYLELATRA----GE----TAADHVKNVILQQLSATSRDRAMLVVDSWR 325 (331)
Q Consensus 263 ----~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~ 325 (331)
......++|.++...|++++|..++++++.. +. ..+..+++.++ ...++.++|...+++.+
T Consensus 246 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY--WQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
Confidence 1244566777777778888888877777642 21 22333344443 34566667777666644
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=9.1e-12 Score=107.90 Aligned_cols=201 Identities=14% Similarity=0.076 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA 174 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 174 (331)
.+...|.+|.. .+++++|++.|.+|++. ++ +.++.++|.+|...+++++|+.+|++++++.... +
T Consensus 39 ~y~~aa~~y~~----~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~---~ 111 (290)
T d1qqea_ 39 LCVQAATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR---G 111 (290)
T ss_dssp HHHHHHHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc---c
Confidence 45556889998 89999999999999875 33 3578899999999999999999999988762210 0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccc
Q 020091 175 NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPL 246 (331)
Q Consensus 175 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~ 246 (331)
+.. ....++.++|.+|.. ..+++++|+++|++|++. +. ..++.++|.+|.. .+
T Consensus 112 ~~~------------~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g 172 (290)
T d1qqea_ 112 QFR------------RGANFKFELGEILEN---DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DG 172 (290)
T ss_dssp CHH------------HHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TT
T ss_pred cch------------hHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cC
Confidence 111 114567788888754 157899999999999753 32 3457888999876 45
Q ss_pred cHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHhhhc
Q 020091 247 SHRQARKWMKRAADCG--H-------GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--A-----ADHVKNVILQQLS 310 (331)
Q Consensus 247 ~~~~A~~~~~~a~~~~--~-------~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~--~-----a~~~l~~~~~~l~ 310 (331)
++++|+.+|++++... . ...++.+|.++...++++.|...++++.+..+. . ....+...+....
T Consensus 173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d 252 (290)
T d1qqea_ 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (290)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC
Confidence 9999999999988752 1 134567888888899999999999998876532 1 1122222333444
Q ss_pred hhcHHHHHHHHHhhhcCCC
Q 020091 311 ATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~ 329 (331)
.+.+.++...++++.+..|
T Consensus 253 ~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 253 SEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp TTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHhhcCH
Confidence 4557778777776665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1.7e-13 Score=121.21 Aligned_cols=218 Identities=8% Similarity=-0.105 Sum_probs=157.7
Q ss_pred HHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CC--CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-
Q 020091 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKH----GR--GVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD- 151 (331)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~----g~--g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~- 151 (331)
.++|+.++.+.++..|+ +..++...+.++.. |. ...+++++|+.+|++++..+ ++.+++.+|.++...+
T Consensus 45 ~~~al~~~~~~l~~~P~--~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence 37888888888887765 67777666655442 00 01345889999999999875 8999999998887764
Q ss_pred -CHHHHHHHHHHHHHcCCCCC------------CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc-CCC--CCCCH-
Q 020091 152 -KKEAAISLYRQAAVLGDPAA------------QPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR-GRG--VDFNL- 212 (331)
Q Consensus 152 -~~~~A~~~~~~a~~~~~~~~------------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-G~g--~~~d~- 212 (331)
+.++|+.++.+++...+... ..+.+++|+.++++++.. .+..+++++|.++.. |.- ....+
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 68999999999999977665 678899999999998764 689999999999875 321 01111
Q ss_pred ----------------------HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHH
Q 020091 213 ----------------------QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKA 266 (331)
Q Consensus 213 ----------------------~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a 266 (331)
+++...|.+++.. ....++..+|.++.. .++..+|+..|.++.... +..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~ 278 (334)
T d1dcea1 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV----LQSELESCKELQELEPENKWCLLT 278 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHH----HhhHHHHHHHHHHHHhhCchHHHH
Confidence 1222222232222 122233344555533 458889999999998774 4678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 304 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~ 304 (331)
++.+|.+|...|++++|+.+|++|++.++..+.++...
T Consensus 279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 279 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp HHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 88999999999999999999999999988766654444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=6.1e-11 Score=102.56 Aligned_cols=178 Identities=13% Similarity=0.039 Sum_probs=135.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQ 197 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 197 (331)
..++++|.++|.+| |.+|...+++++|+..|.+|+++... .++.. +.+.++.+
T Consensus 30 ~~~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~---~~~~~------------~~a~~~~~ 82 (290)
T d1qqea_ 30 SYKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKK---AGNED------------EAGNTYVE 82 (290)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHH---TTCHH------------HHHHHHHH
T ss_pred cccHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHH---cCCCH------------HHHHHHHH
Confidence 44678899888876 67898999999999999998875210 00000 12457889
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC--
Q 020091 198 LALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-- 263 (331)
Q Consensus 198 lg~~y~~G~g~~~d~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~-- 263 (331)
+|.+|.. .+++++|+++|+++++. |. ..++..+|.+|....| ++++|+.+|++|++. +.
T Consensus 83 ~g~~y~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~A~~l~~~~~~~~ 155 (290)
T d1qqea_ 83 AYKCFKS----GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH---DYAKAIDCYELAGEWYAQDQSVA 155 (290)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHH----hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHH---HHHHHHHHHHHHHHHHHhcCchh
Confidence 9999987 78999999999999763 44 5668899988865434 999999999999764 33
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 264 --GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-------TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 264 --~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~-------~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
..++.++|.++...|++++|+.+|++++.... ......+..+...+..++...+...+++..+..|
T Consensus 156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34578899999999999999999999998632 1223344556666788899999999999887765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.8e-11 Score=90.16 Aligned_cols=106 Identities=14% Similarity=0.037 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHH
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVK 181 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~ 181 (331)
+...|..++. .+++++|+..|.++++.. ++.+++++|.+|...|++++|+..|.+++.+++
T Consensus 6 l~~~g~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------- 68 (117)
T d1elwa_ 6 LKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------------- 68 (117)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-------------
Confidence 4456777777 788888888888887764 777888888888888888888888888887766
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 182 LLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 182 ~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+++.+++++|.+|.. .+++++|+.+|+++++. +++.++..++.+-
T Consensus 69 --------~~~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 69 --------DWGKGYSRKAAALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp --------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------chhhHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 578888888888876 67788888888888765 5666666666553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3e-11 Score=98.20 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=108.8
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
..+.+....+..|++++|+..+. .. ...++.+++++|.+|.. .+++++|+.+|++|++.+ ++.+++++|
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~----~i-~~~~~~~~~nlG~~~~~----~g~~~~A~~~~~kAl~ldp~~~~a~~~~g 77 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFS----AV-QDPHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQRG 77 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----TS-SSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH----hc-CCCCHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 45667777889999999976554 33 34589999999999999 999999999999999875 999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.+|...|++++|+..|++|+...+...........+ ..+....++++++|.+|.. .+++++|++.|.+|+.
T Consensus 78 ~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~-----~~~~~~~e~~~n~a~~~~~----~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 78 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL-----QFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB-----CCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHT
T ss_pred HHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh-----hcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHh
Confidence 999999999999999999997644332000000000 0001124678899999987 7889999999999986
Q ss_pred C
Q 020091 225 G 225 (331)
Q Consensus 225 ~ 225 (331)
.
T Consensus 149 ~ 149 (192)
T d1hh8a_ 149 M 149 (192)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=1.3e-11 Score=100.36 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCH
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANA 176 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 176 (331)
+++..+...|..|+. .|++++|+.+|++|+... ++.+++++|.+|...|++++|+.+|.+|++++|
T Consensus 2 ~~a~~l~~~Gn~~~~----~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-------- 69 (201)
T d2c2la1 2 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------- 69 (201)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--------
Confidence 467888999999999 999999999999999874 999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 177 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 177 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+++.+++++|.+|.. .+++++|+.+|++|++.
T Consensus 70 -------------~~~~a~~~lg~~~~~----l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 70 -------------QSVKAHFFLGQCQLE----MESYDEAIANLQRAYSL 101 (201)
T ss_dssp -------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred -------------CcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 589999999999987 88999999999999863
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.9e-13 Score=125.06 Aligned_cols=209 Identities=11% Similarity=0.000 Sum_probs=127.8
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhcCCCHHHHHHHH
Q 020091 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--TLAMVDAGLMYWEMDKKEAAISLY 160 (331)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~ 160 (331)
+|.+.+++..+.-++ .+.+++++|.+|.. .+++++| |++++..+. +.+....+.+. + ..+..++..+
T Consensus 4 eA~q~~~qA~~l~p~--~a~a~~~la~~~~~----~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~-~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD--MTDSKLGPAEVWTS----RQALQDL---YQKMLVTDLEYALDKKVEQDLW-N-HAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHHGG--GTCSSSCSSSSHHH----HHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-H-HHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHhhHHHHHHH----HchHHHH---HHHHHHcChhhHHHHhHHHHHH-H-HHHHHHHHHH
Confidence 455556666665554 46677888888888 7778776 778776542 22222222211 1 1245667777
Q ss_pred HHHHHcCCCCC-------CccCHHHHHHHHHHHH---------HCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 161 RQAAVLGDPAA-------QPANAEEAVKLLYQAS---------IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 161 ~~a~~~~~~~~-------~~~~~~~A~~~~~~a~---------~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
++......... ......+|...|..++ ++.+..++.++|..+.. .++.++|...+++++.
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHH
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHHHHHHHHhC
Confidence 77665432222 1122334444444443 24677889999999976 7889999999999998
Q ss_pred CCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCHHHHH
Q 020091 225 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADH 300 (331)
Q Consensus 225 ~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 300 (331)
.....++.+||.++.. .+++++|+.||++|+.. ++..++++||.++...|+..+|+.+|.+|+.. ....|..
T Consensus 149 ~~~~~~~~~LG~l~~~----~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~ 224 (497)
T d1ya0a1 149 YICQHCLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 8888899999999977 45999999999999987 56789999999999999999999999999875 5788899
Q ss_pred HHHHHHhhhc
Q 020091 301 VKNVILQQLS 310 (331)
Q Consensus 301 ~l~~~~~~l~ 310 (331)
|+..++.+..
T Consensus 225 nL~~~~~~~~ 234 (497)
T d1ya0a1 225 NLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9988876544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=6.1e-11 Score=93.14 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHH
Q 020091 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEA 179 (331)
Q Consensus 102 ~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A 179 (331)
..+...|..|+. .+++++|+.+|++++..+ ++.+++++|.+|...|++++|+..|++++++++
T Consensus 11 ~~l~~~gn~~~~----~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p----------- 75 (159)
T d1a17a_ 11 EELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----------- 75 (159)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-----------
Confidence 445556777777 788888888888887764 777888888888888888888888888877765
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 180 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 180 ~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.++.+++++|.+|.. .+++++|+.+|++++.. .+..+...++.+.
T Consensus 76 ----------~~~~a~~~~g~~~~~----~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 76 ----------KYIKGYYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp ----------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ----------cchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 477888888888776 67788888888888654 4566666665554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.5e-10 Score=100.83 Aligned_cols=209 Identities=11% Similarity=0.009 Sum_probs=166.8
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC----C------CHH
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G------STL 138 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~----~------~~~ 138 (331)
...+..|++++|...+....+..+..++ ..++..+|.++.. .+++..|...+.++... . ...
T Consensus 59 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~ 134 (366)
T d1hz4a_ 59 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHEF 134 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhcccchhhHHHH
Confidence 3456779999999999888876655443 4578889999999 89999999999998753 1 234
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----------------CccCHHHHHHHHHHHHHC----C-----CHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA----------------QPANAEEAVKLLYQASIA----G-----HVR 193 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~A~~~~~~a~~~----~-----~~~ 193 (331)
....+|.++...+++++|..+|.++........ ..+++.++...+.++... + ...
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 667899999999999999999999998765544 567788888888887542 1 244
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc----CC
Q 020091 194 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH 263 (331)
Q Consensus 194 a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~ 263 (331)
++..+|.++.. .+++++|..+++++.... ......++|.+|.. .+++++|..+++++... +.
T Consensus 215 ~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 286 (366)
T d1hz4a_ 215 ANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEIVLEELNENARSLRL 286 (366)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhccc
Confidence 56778888876 789999999999997642 24567789999976 44999999999998743 32
Q ss_pred ----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 264 ----GKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 264 ----~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..++..+|.+|...|++++|+.+|++|++.
T Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 457789999999999999999999999875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.23 E-value=3.6e-11 Score=88.84 Aligned_cols=92 Identities=20% Similarity=0.098 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHH
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAV 180 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~ 180 (331)
..+.+|.++.. .|++++|+.+|++++... ++.++++||.++...+++++|+.+|++++++.|
T Consensus 18 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------------ 81 (112)
T d1hxia_ 18 NPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------------ 81 (112)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHH----HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc------------
Confidence 35788999999 899999999999999875 899999999999999999999999999999877
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 020091 181 KLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 223 (331)
Q Consensus 181 ~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~ 223 (331)
.++.++++||.+|.. .+++++|+++|++.+
T Consensus 82 ---------~~~~a~~~la~~y~~----~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 82 ---------KDIAVHAALAVSHTN----EHNANAALASLRAWL 111 (112)
T ss_dssp ---------TCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred ---------ccccchHHHHHHHHH----CCCHHHHHHHHHHHh
Confidence 589999999999987 789999999999874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3e-10 Score=89.06 Aligned_cols=120 Identities=16% Similarity=0.044 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHH
Q 020091 192 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 267 (331)
Q Consensus 192 ~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 267 (331)
+..+...|..|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++|+..|+++++. .+..++
T Consensus 10 a~~l~~~gn~~~~----~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~p~~~~a~ 81 (159)
T d1a17a_ 10 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGY 81 (159)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh----ccccchHHHHHHHHHHHcccchHHH
Confidence 3445667888876 78999999999999875 788999999999977 45999999999999876 568899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhchhcHHHHHH
Q 020091 268 LEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAML 319 (331)
Q Consensus 268 ~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~l~~~~~~l~~~~~~~a~~ 319 (331)
+.+|.++...|++++|+.+|++++... +..+...+..+...+.....+++..
T Consensus 82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 82 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999875 4566666666655555544545543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=6.3e-12 Score=110.89 Aligned_cols=186 Identities=3% Similarity=-0.170 Sum_probs=137.8
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHH-HHHHHHHhcCCCHHH
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAM-VDAGLMYWEMDKKEA 155 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~-~~lg~~~~~~~~~~~ 155 (331)
+.+.+|+..+...++..+ .++.+++.+|.++..- ..+++++|+.++.+++... +..++ ..+|.++...+.+++
T Consensus 87 ~~~~~al~~~~~~l~~~p--k~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRL--PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CcHHHHHHhhHHHHHh--ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 557788888888887755 4788889999877651 1567999999999998874 66665 577889988999999
Q ss_pred HHHHHHHHHHcCCCCC-----------------------------------------CccCHHHHHHHHHHHHHC--CCH
Q 020091 156 AISLYRQAAVLGDPAA-----------------------------------------QPANAEEAVKLLYQASIA--GHV 192 (331)
Q Consensus 156 A~~~~~~a~~~~~~~~-----------------------------------------~~~~~~~A~~~~~~a~~~--~~~ 192 (331)
|+.+|++++..++... ......++...|.+++.. .+.
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~ 242 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL 242 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence 9999999998877554 112222344444444433 344
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC--HHHHH
Q 020091 193 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQL 268 (331)
Q Consensus 193 ~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 268 (331)
.++..+|.++.. .+++.+|+..|.++++. .+..++..+|.+|.. .+++++|+.+|+++++.++ ...+.
T Consensus 243 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 243 FRCELSVEKSTV----LQSELESCKELQELEPENKWCLLTIILLMRALDP----LLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp SSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT----GGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred hHHHHHHHHHHH----HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 455566766665 67899999999999876 457889999999964 5599999999999999865 45556
Q ss_pred HHHHHHhc
Q 020091 269 EHGLGLFT 276 (331)
Q Consensus 269 ~Lg~~~~~ 276 (331)
.|+..+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 77776653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.7e-10 Score=85.79 Aligned_cols=109 Identities=8% Similarity=-0.018 Sum_probs=97.0
Q ss_pred HHHHHHHhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Q 020091 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (331)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (331)
+...++..++..|++++|+..|...++..|+ ++.+++.+|.+|.. .+++++|+..|.+++..+ ++.+++++|
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g 78 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccc----cccccccchhhhhHHHhccchhhHHHHHH
Confidence 3455667788999999999999999988664 79999999999999 999999999999999874 999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 020091 145 LMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCL 202 (331)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 202 (331)
.++...|++++|+..|+++++..| .++.++..++.+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~p---------------------~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKHEA---------------------NNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT---------------------TCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHh
Confidence 999999999999999999999877 4778887777764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=5e-11 Score=96.73 Aligned_cols=96 Identities=22% Similarity=0.089 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHH
Q 020091 191 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 266 (331)
Q Consensus 191 ~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 266 (331)
.+..+...|..|.. .+++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|.+|++. .++.+
T Consensus 3 ~a~~l~~~Gn~~~~----~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai~~~~~al~l~p~~~~a 74 (201)
T d2c2la1 3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVKA 74 (201)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhhHHHHHHHHhCCCcHHH
Confidence 56677889999887 78999999999999865 788999999999976 45999999999999887 56889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 267 QLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 267 ~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+++||.+|...|++++|+..|++|++..
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3e-10 Score=85.04 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=87.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC----HHHHHHH
Q 020091 197 QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEH 270 (331)
Q Consensus 197 ~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~L 270 (331)
+|...+.. .+++++|.+.|++++.. .++.+++++|+++.. .+...++.+|+..|++++..+. .+++++|
T Consensus 4 ~l~n~~~~----~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 4 AVLNELVS----VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcC----HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 44555544 67899999999999875 788999999999964 2224578899999999987653 3478999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhc
Q 020091 271 GLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLS 310 (331)
Q Consensus 271 g~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~ 310 (331)
|.+|+..|++++|+.+|+++++.++ ..|..+...+...+.
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999998754 777777777766554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=6.1e-10 Score=84.05 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
..+.++|..++..|++++|+.+|.+++++++ .++.+++++|.+|.. .+++++|+.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p---------------------~~~~~~~~~a~~~~~----~~~~~~A~~ 59 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP---------------------TNMTYITNQAAVYFE----KGDYNKCRE 59 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------------ccHHHHHhHHHHHHH----cCchHHHHH
Confidence 3455778888888888888888888887765 477788888888876 677888888
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 218 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 218 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
+|++|++. .+..++..+|.+ ++.+|.++...+++++|+.+|++++...
T Consensus 60 ~~~~al~l~~~~~~~~~~~a~~-----------------------------~~~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 60 LCEKAIEVGRENREDYRQIAKA-----------------------------YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHH-----------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcccHHHHHHHHHH-----------------------------HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 88888663 233333333333 3467888888888888888888887653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.10 E-value=5.3e-10 Score=82.36 Aligned_cols=89 Identities=10% Similarity=-0.054 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
+++|.++...|++++|+..|++++...| .++.+++++|.+|.. .+++++|+.+|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~a~~~lg~~~~~----~~~~~~A~~~~~ 74 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEP---------------------EREEAWRSLGLTQAE----NEKDGLAIIALN 74 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccccc---------------------ccchhhhhhhhhhhh----hhhHHHhhcccc
Confidence 4555555555555555555555555544 355555666665554 455555555555
Q ss_pred HHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 020091 221 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 258 (331)
Q Consensus 221 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 258 (331)
++++. .++.+++.||.+|.. .+++++|+++|++.
T Consensus 75 ~al~~~p~~~~a~~~la~~y~~----~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 75 HARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cccccccccccchHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 55443 344555555555543 33455555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.5e-09 Score=86.09 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----------------TLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----------------~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
+..+...|..++. .+++++|+.+|++|++... ..++.++|.+|...|++++|+.+++++
T Consensus 13 a~~l~~~G~~~~~----~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 13 STIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence 3445556666666 6777777777777765310 123445666666666666666666666
Q ss_pred HHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 164 AVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 164 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+.++| .++.+++++|.+|.. .+++++|+.+|+++++. +++.+...++.+.
T Consensus 89 l~~~p---------------------~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 89 LELDS---------------------NNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hhccc---------------------cchhhhHHHHHHHHH----hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 65554 356666666666655 55566666666666543 3555555555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=6.6e-10 Score=83.86 Aligned_cols=112 Identities=13% Similarity=0.201 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEE 178 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 178 (331)
+..+-.+|..|+. .+++++|+.+|.++++.+ ++.+++++|.+|...|++++|+..|++++++.+....
T Consensus 4 a~~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~------ 73 (128)
T d1elra_ 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE------ 73 (128)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT------
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH------
Confidence 4566789999999 899999999999999875 8999999999999999999999999999987542110
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Q 020091 179 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNT 234 (331)
Q Consensus 179 A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-~~~~a~~~l 234 (331)
.+ ...+.+++++|.++.. .+++++|+++|++++.. .++.....+
T Consensus 74 --~~------~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~~~~~~~~~l 118 (128)
T d1elra_ 74 --DY------RQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (128)
T ss_dssp --CH------HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred --HH------HHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 00 0124577888888886 78999999999999765 344444333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=6.9e-10 Score=79.17 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 020091 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (331)
Q Consensus 100 ~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (331)
.++.+|.||.++.. .+|+.+|+.||++|++. ..++++.+||.++.+.|++++|+.+|+++++++|
T Consensus 4 saddc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-- 77 (95)
T d1tjca_ 4 TAEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-- 77 (95)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc--
Confidence 46789999999999 89999999999999865 1367899999999999999999999999999987
Q ss_pred CCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Q 020091 171 AQPANAEEAVKLLYQASIAGHVRAQYQLALCLH 203 (331)
Q Consensus 171 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 203 (331)
+++.+++|++.+..
T Consensus 78 -------------------~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 78 -------------------EHQRANGNLKYFEY 91 (95)
T ss_dssp -------------------TCHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHH
Confidence 58999999987653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.04 E-value=2e-09 Score=85.15 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 020091 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (331)
Q Consensus 104 ~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (331)
+...|..++. .+++.+|+..|.+|+.. ..+.++.++|.+|...+++++|+..|.++++
T Consensus 30 ~~~~~~~~~~----~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 105 (169)
T d1ihga1 30 LKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 105 (169)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence 4557888888 89999999999998743 1344667888888888888888888888888
Q ss_pred cCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Q 020091 166 LGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 239 (331)
Q Consensus 166 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 239 (331)
+.+ +++.+++++|.+|.. .+++++|+..|+++++. ++..+...|+.++.
T Consensus 106 ~~p---------------------~~~~a~~~~g~~~~~----l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 106 IDP---------------------SNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp TCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhh---------------------hhhhHHHhHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 766 578888888888876 67888888888888765 56777777777763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.1e-11 Score=115.75 Aligned_cols=195 Identities=6% Similarity=-0.110 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc---------CHHHHHHHHHHHHHCC-
Q 020091 123 KALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPA---------NAEEAVKLLYQASIAG- 190 (331)
Q Consensus 123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~A~~~~~~a~~~~- 190 (331)
+|+++|++|+.. +++++++++|.++...+++++| |++++..++..+... .+..++..+++..+..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 799999999865 5888999999999999999876 888887765433211 1234555566555431
Q ss_pred ---CHHH-HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH
Q 020091 191 ---HVRA-QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 264 (331)
Q Consensus 191 ---~~~a-~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 264 (331)
.... ...++.++.. .+.|+.|+..|.++... .+..++.++|..+.. ..+..+|...+++++.....
T Consensus 81 ~~~~~~~~~~~~~~l~~a----~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~ 152 (497)
T d1ya0a1 81 NPNRSEVQANLSLFLEAA----SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIVKPQSSSCSYICQ 152 (497)
T ss_dssp CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHTC-----------------------------------CCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHHHHHHHHhCCCHH
Confidence 1222 2223333332 45577777777766543 567788999999954 34899999999999888777
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCCC
Q 020091 265 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 330 (331)
Q Consensus 265 ~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~~ 330 (331)
.++.+||.++...+++++|+.+|++|++..+ ..+..+++.++. ..++..+|...+.+.+...|.
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~--~~~~~~~A~~~y~ral~~~~~ 218 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS--SKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH--HTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999999999754 567777777765 456777888888887765543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=1.1e-07 Score=82.19 Aligned_cols=182 Identities=12% Similarity=0.003 Sum_probs=115.4
Q ss_pred HhHHHHHHHHHHhCCCCCHHHHHHHHHHHhc--------CC--CCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhc
Q 020091 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKH--------GR--GVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWE 149 (331)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~--------g~--g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~ 149 (331)
.+..+|.+.+...+. ++..++........ |. ...+..++|...|++|+.. .+...+..++.++..
T Consensus 34 Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 34 RVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 344556666666553 67776665554321 00 0134567899999999975 256677888999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 020091 150 MDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GY 227 (331)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~ 227 (331)
.++.++|...|.+++...+.. ...++..++.+... .+++++|+..|.++++. ..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~--------------------~~~~w~~~~~~~~~----~~~~~~ar~i~~~al~~~~~~ 167 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDID--------------------PTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSC--------------------THHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCC
T ss_pred cccHHHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCc
Confidence 999999999999999876542 23345555555544 45566777777776654 23
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 228 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 228 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
...+...+....... ++.+.|...|++++.. .++..+..++.++...|++++|...|++|+..
T Consensus 168 ~~~~~~~a~~e~~~~---~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 168 HHVYVTAALMEYYCS---KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp THHHHHHHHHHHHTS---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 444445554433322 2666677777776654 34556666666666677777777777777664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.6e-08 Score=79.95 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHH-HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAE-EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
+..+...|..++..+++++|+.+|++++...+......+.. .....+ ...++.++|.+|.. .+++++|
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~nla~~y~k----~~~~~~A 81 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL-------RLASHLNLAMCHLK----LQAFSAA 81 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH-------HHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchh-------HHHHHHHHHHHHHh----hhhcccc
Confidence 44566889999999999999999999998865443222211 111111 12345667777765 5667777
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 275 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 275 (331)
+.+++++++. .++.+++.+|.+|.. .+++++|+.+|++++.. +++.+...|+.+..
T Consensus 82 ~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 82 IESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cchhhhhhhccccchhhhHHHHHHHHH----hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777653 456666666666654 33666666666666554 34555555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.7e-09 Score=80.90 Aligned_cols=109 Identities=10% Similarity=0.015 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 020091 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 220 (331)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~ 220 (331)
-+|+..+...+++++|++.|++++..++ .++.+++++|.++.. .+..+|+.+|+..|+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p---------------------~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~ 60 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS---------------------VSKSTQFEYAWCLVR-TRYNDDIRKGIVLLE 60 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC---------------------CCHHHHHHHHHHHTT-SSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC---------------------CCHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 3566666677788888888888887776 599999999999864 112457789999999
Q ss_pred HHHHCCC----HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 020091 221 RAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 275 (331)
Q Consensus 221 ~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 275 (331)
+++..+. ..++++||.+|.. .+++++|+.+|+++++. ++..+...++.+..
T Consensus 61 ~~l~~~~~~~~~~~~~~Lg~~y~~----~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 61 ELLPKGSKEEQRDYVFYLAVGNYR----LKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhccCCchHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9988653 3489999999976 45999999999999987 55778877776543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.99 E-value=7.5e-09 Score=80.40 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC------------------CHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------------------STLAMVDAGLMYWEMDKKEAAISLYRQ 162 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (331)
+..+..-|..++. .+++.+|+..|.+|++.- ....+.|+|.+|...+++++|+.+|.+
T Consensus 17 a~~~~~~G~~~f~----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~ 92 (153)
T d2fbna1 17 AFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 92 (153)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence 3445556777777 788888888888887531 123556788888888888888888888
Q ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 163 AAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 163 a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+++++| .++.+++++|.+|.. .+++++|+.+|+++++. ++..+...++.+.
T Consensus 93 al~~~p---------------------~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 93 VLKIDK---------------------NNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHST---------------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cccccc---------------------hhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888766 478888888888876 77888888888888764 5677777777665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.98 E-value=5.7e-09 Score=82.42 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020091 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----------------STLAMVDAGLMYWEMDKKEAAISLYRQA 163 (331)
Q Consensus 101 ~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (331)
+..+...|..++. .+++.+|+.+|.+|+..- ....+.++|.||...+++++|+.+|.++
T Consensus 15 a~~~~e~G~~~~~----~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a 90 (168)
T d1kt1a1 15 AAIVKEKGTVYFK----GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 90 (168)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence 4567778988988 899999999999988530 1234567888888888888888888888
Q ss_pred HHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 164 AVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 164 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
+.++| +++.+++++|.+|.. .+++++|+.+|.++++. ++..+...++.+.
T Consensus 91 l~l~p---------------------~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 91 LGLDS---------------------ANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHCT---------------------TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hhccc---------------------chHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88766 588888888888887 78888888888888875 5677777777775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.92 E-value=2.4e-08 Score=78.68 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAA-QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
+..+...|..++..|++++|+.+|.+|+..-+... ...........+ ....+.|+|.+|.. .+++.+|
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~~----l~~~~~A 83 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF-------LLAAFLNLAMCYLK----LREYTKA 83 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH-------HHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchh-------HHHHHHhHHHHHHH----hhhcccc
Confidence 45567899999999999999999999987532211 111111111111 12334456666554 5555666
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc
Q 020091 216 ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 261 (331)
Q Consensus 216 ~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 261 (331)
+.++++++.. ++..+++++|.+|.. .+++++|+.+|.+++..
T Consensus 84 i~~~~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 84 VECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 6555555442 344444444444433 22444444444444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.91 E-value=4.7e-09 Score=82.89 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 020091 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAA 216 (331)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~y~~G~g~~~d~~~A~ 216 (331)
.....|..+...+++++|+..|.+++...+. ..+.....+.. ++...
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~-------~~~~~~~~~~~~~~~~~~------------------------ 77 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG-------SRAAAEDADGAKLQPVAL------------------------ 77 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HHHHSCHHHHGGGHHHHH------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh-------hhhhhhhHHHHHhChhhH------------------------
Confidence 3457888999999999999999988754210 00000000000 11123
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 020091 217 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 294 (331)
Q Consensus 217 ~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~ 294 (331)
..+.++|.+|.. .+++++|+..|.++++. +++.+++++|.+|...|++++|+..|+++++.+
T Consensus 78 ------------~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 78 ------------SCVLNIGACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp ------------HHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHHHHHHh----hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 334445555544 33555555555555544 445666666666666666666666666666653
Q ss_pred --CHHHHHHHHHHHhhh
Q 020091 295 --ETAADHVKNVILQQL 309 (331)
Q Consensus 295 --~~~a~~~l~~~~~~l 309 (331)
+..+...+..+...+
T Consensus 142 p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 142 PEDKAIQAELLKVKQKI 158 (169)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 344445555544433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.88 E-value=5.1e-08 Score=75.50 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 020091 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 217 (331)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~ 217 (331)
..+...|..++..|++.+|+..|++|+..-+......+.. ..-..... ....+.|+|.+|.. .+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~--~~~~~~~~---~~~~~~Nla~~~~~----l~------- 81 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--LLDKKKNI---EISCNLNLATCYNK----NK------- 81 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH--HHHHHHHH---HHHHHHHHHHHHHH----TT-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHH--HHHhhhhH---HHHHHhhHHHHHHH----hc-------
Confidence 3455688888999999999999999987643221111100 00000000 11233344444443 34
Q ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-
Q 020091 218 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG- 294 (331)
Q Consensus 218 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~- 294 (331)
++++|+.++.+++.. .+..+++++|.+|...|++++|+.+|+++++.+
T Consensus 82 -----------------------------~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 82 -----------------------------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred -----------------------------ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555555555555444 345666666666666777777777777776653
Q ss_pred -CHHHHHHHHHHHhhh
Q 020091 295 -ETAADHVKNVILQQL 309 (331)
Q Consensus 295 -~~~a~~~l~~~~~~l 309 (331)
+..+...+..+...+
T Consensus 133 ~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 133 NNLDIRNSYELCVNKL 148 (153)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 344555555544433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=3.5e-08 Score=69.95 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHH
Q 020091 229 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETA 297 (331)
Q Consensus 229 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~ 297 (331)
+.++.+|.++.. .+++.+|+.||++|++. ...+++.+||.+++..|++++|+.+|+++++.+ +..
T Consensus 6 ddc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 6 EDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 334555555544 23555555555555432 124677788888888888888888888888764 466
Q ss_pred HHHHHHHHHhhh
Q 020091 298 ADHVKNVILQQL 309 (331)
Q Consensus 298 a~~~l~~~~~~l 309 (331)
+..|++.+...+
T Consensus 82 a~~Nl~~~~~~l 93 (95)
T d1tjca_ 82 ANGNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 677776665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.74 E-value=3.7e-08 Score=75.65 Aligned_cols=100 Identities=9% Similarity=0.091 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHH
Q 020091 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD----------KKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQ 185 (331)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~ 185 (331)
.+.+++|+..|++|++.. ++++++++|.++...+ .+++|+..|++|++++|
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P----------------- 72 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP----------------- 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----------------
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 345788999999888764 8888999998887543 34566666666666554
Q ss_pred HHHCCCHHHHHHHHHHHhc-CC--C----CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 020091 186 ASIAGHVRAQYQLALCLHR-GR--G----VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 238 (331)
Q Consensus 186 a~~~~~~~a~~~lg~~y~~-G~--g----~~~d~~~A~~~~~~A~~~--~~~~a~~~lg~~y 238 (331)
.++.+++++|.+|.. |. + ..+++.+|+++|++|++. ++..+...|+.+.
T Consensus 73 ----~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 73 ----KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 699999999999964 21 0 012355666666666543 3455555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.69 E-value=7.4e-08 Score=73.90 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=74.2
Q ss_pred chHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR------GVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~------g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
+.+++|...+...++..| .++.+++++|.++..-. ...+.+++|+..|++|++.+ ++.+++++|.+|...
T Consensus 11 ~~fe~A~~~~e~al~~~P--~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 458899988888888866 48999999999986300 01355789999999999875 999999999999775
Q ss_pred C----C-------HHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 020091 151 D----K-------KEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCL 202 (331)
Q Consensus 151 ~----~-------~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 202 (331)
| + +++|+.+|++++++.| ++..++..|+.+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P---------------------~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQP---------------------DNTHYLKSLEMTA 130 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCC---------------------CHHHHHHHHHHHH
Confidence 3 2 3445555555554443 5777777777765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=1.8e-06 Score=74.33 Aligned_cols=192 Identities=11% Similarity=-0.003 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHH---CCCHHHH
Q 020091 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASI---AGHVRAQ 195 (331)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~a~ 195 (331)
.+++...|++|+.. .++..+++-+..+...++.. ...+.........++|...|++|++ +.+...+
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~ 102 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL---------AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------HHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchH---------HHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHH
Confidence 45677788888875 47887776655443211100 0000000022233444455555543 2467778
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcC--CHHHHHHH
Q 020091 196 YQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEH 270 (331)
Q Consensus 196 ~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~L 270 (331)
..++.++.. .+++++|...|.++++.. ....+..++.+... ..+.+.|...|.++.... ....+...
T Consensus 103 ~~ya~~~~~----~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~----~~~~~~ar~i~~~al~~~~~~~~~~~~~ 174 (308)
T d2onda1 103 FAYADYEES----RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred HHHHHHHHh----cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 888888876 788999999999998863 24466677777654 458999999999998774 45666777
Q ss_pred HHHH-hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHhhhcCCC
Q 020091 271 GLGL-FTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 329 (331)
Q Consensus 271 g~~~-~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~~~~~~~ 329 (331)
+... ...|+.+.|...|++++...+......+..+......++.++|..++++..+..|
T Consensus 175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 7654 4478999999999999997655555556666666678899999999999877655
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.64 E-value=1.2e-07 Score=73.51 Aligned_cols=100 Identities=14% Similarity=0.022 Sum_probs=78.2
Q ss_pred HHHHHHH--HHHHhcCCCCCCCHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020091 101 AMVLLRW--GKRFKHGRGVRKNLDKALDSFLKGAARG--------------STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (331)
Q Consensus 101 ~~a~~~L--G~~y~~g~g~~~~~~~A~~~~~~A~~~~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (331)
+.++..+ |..++. .|++++|+..|++|++.. .+.++.++|.+|...|++++|+..|++++
T Consensus 7 a~a~~~l~~g~~~~~----~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 7 VGAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 3444545 778877 899999999999999742 24678899999999999999999999888
Q ss_pred HcCCCCCCccCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 165 VLGDPAAQPANAEEAVKLLYQASIA------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 165 ~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
.+.+ +.... ....+++++|.+|.. .+++++|+.+|++|++
T Consensus 83 ~~~~----------------~~~~~~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 83 HYFN----------------RRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHH----------------HHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hccc----------------ccccccccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHH
Confidence 6522 11111 124578999999987 7899999999999986
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.55 E-value=2.3e-07 Score=71.82 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=81.2
Q ss_pred HHHHHhccCCchHHHhHHHHHHHHHHhCCCCC----------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---
Q 020091 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLRE----------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--- 135 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--- 135 (331)
+..+...+..|++++|+..|.+.++..++.++ +.++.++|.+|.. .+++++|+..+.+++...
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----cCccchhhHhhhhhhhccccc
Confidence 44455677889999999999999998876543 5689999999999 999999999999998641
Q ss_pred ----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 020091 136 ----------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (331)
Q Consensus 136 ----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (331)
...+++++|.+|...|++++|+..|++|+++.+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 234789999999999999999999999998743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.12 E-value=1.9e-05 Score=62.23 Aligned_cols=93 Identities=13% Similarity=-0.018 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhC--C----------------------CHHHHHHHHHHHhcCCCHHHHHH
Q 020091 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G----------------------STLAMVDAGLMYWEMDKKEAAIS 158 (331)
Q Consensus 103 a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~--~----------------------~~~a~~~lg~~~~~~~~~~~A~~ 158 (331)
++...|..... .|++++|++.|.+|+.. | ...++.+++.++...|++++|+.
T Consensus 13 ~~~~~g~~~~~----~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 13 AEKTAGVHAAA----AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 44455555555 56666666666666654 1 23567788888888888888888
Q ss_pred HHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 020091 159 LYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 224 (331)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~ 224 (331)
++++++...+ .+..++..|+.+|.. .+++.+|++.|+++..
T Consensus 89 ~~~~al~~~P---------------------~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 89 ELEALTFEHP---------------------YREPLWTQLITAYYL----SDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHST---------------------TCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---------------------ccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence 8888888766 588888888888886 7888888888888743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=2.2e-05 Score=61.89 Aligned_cols=116 Identities=10% Similarity=-0.111 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 020091 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 215 (331)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A 215 (331)
...+++..|......|+.++|+..|.+|+.+........ +.. .++-..
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-~~~-------------------------------~~w~~~ 57 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-LRD-------------------------------FQFVEP 57 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-GTT-------------------------------STTHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-Ccc-------------------------------hHHHHH
Confidence 346778899999999999999999999998854322100 000 000000
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 020091 216 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 290 (331)
Q Consensus 216 ~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A 290 (331)
....+......++.+++.++.. .+++++|+.++++++.. .+..++..|+.+|...|++.+|+..|+++
T Consensus 58 ---~r~~l~~~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 58 ---FATALVEDKVLAHTAKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 0001111223445555555543 23566666666665554 34556666666666666666666666665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.02 E-value=6.7e-06 Score=69.16 Aligned_cols=119 Identities=8% Similarity=-0.029 Sum_probs=86.8
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--
Q 020091 148 WEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-- 225 (331)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 225 (331)
...|++++|+..|+++++..| +++.+...||.+|.. .+++++|+..|+++++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P---------------------~d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P 61 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASP---------------------KDASLRSSFIELLCI----DGDFERADEQLMQSIKLFP 61 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT---------------------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCG
T ss_pred HHCCCHHHHHHHHHHHHHHCC---------------------CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 455777777777777777665 699999999999987 88999999999999876
Q ss_pred CCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 020091 226 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG---KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 295 (331)
Q Consensus 226 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~ 295 (331)
++..+...++.++.. .....++...+.+....+.+ ......+..+...|+.++|...++++.+..+
T Consensus 62 ~~~~~~~~l~~ll~a----~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 62 EYLPGASQLRHLVKA----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp GGHHHHHHHHHHHHH----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHh----ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 567777788877743 22333433333333223333 3445678888889999999999999987643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.98 E-value=2.9e-06 Score=71.49 Aligned_cols=123 Identities=10% Similarity=-0.023 Sum_probs=77.7
Q ss_pred HhccCCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 020091 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (331)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (331)
...+..|++++|+..+.+.++..|+ ++.+...||.+|.. .|++++|+..|+++++.. +..+...++.++...
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCI----DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 77 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 3456778888887777777766553 77778888888877 788888888888887764 666666777666544
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 020091 151 DKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 225 (331)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 225 (331)
+..+++...+.+....+++ ....+....+.++.. .++.++|...+.++.+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~p--------------------~~~~~~l~~a~~~~~----~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGEN--------------------EELTKSLVSFNLSMV----SQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHTTSCCCEECCCSC--------------------HHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhhcccCc--------------------hHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhc
Confidence 3333332222221111111 123344555666655 67888888888888663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=6.9e-05 Score=54.51 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CHHHHHH
Q 020091 227 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHV 301 (331)
Q Consensus 227 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~ 301 (331)
.+.+.|+.||++..-. ...+..+|+..|+.+...+. .+.++.||..|+..|++++|..++++++++. +..|..+
T Consensus 34 s~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp CHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 4678899999986533 35688999999999987643 4788999999999999999999999999874 5667766
Q ss_pred HHHHHhhhch
Q 020091 302 KNVILQQLSA 311 (331)
Q Consensus 302 l~~~~~~l~~ 311 (331)
...+...+.+
T Consensus 113 ~~~Ie~~~~k 122 (124)
T d2pqrb1 113 KSMVEDKIQK 122 (124)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666655543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.38 E-value=0.00025 Score=51.51 Aligned_cols=70 Identities=1% Similarity=-0.119 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 020091 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (331)
Q Consensus 99 ~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (331)
..+.+.|++|.+..+- ....+..+|+..|+.....+ ..+++|+||..|++.|++++|..+++++++..|.
T Consensus 33 ~s~qt~F~YAw~Lv~S-~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4577888888777651 12466789999999998764 3489999999999999999999999999999874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=7.5 Score=33.23 Aligned_cols=115 Identities=10% Similarity=-0.112 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCc-------cccHHHHHHHHHHHHHcC
Q 020091 190 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGL-------PLSHRQARKWMKRAADCG 262 (331)
Q Consensus 190 ~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~-------~~~~~~A~~~~~~a~~~~ 262 (331)
..+.+.|.+|..+.. .|+.++|..+|..++...+. +-.|+.-- -|..+ +....++ ...
T Consensus 317 ~~~r~~YW~gRa~~~----~G~~~~A~~~~~~~a~~~~f--YG~LAa~~-Lg~~~~~~~~~~~~~~~~~-------~~~- 381 (450)
T d1qsaa1 317 EKDEWRYWQADLLLE----RGREAEAKEILHQLMQQRGF--YPMVAAQR-IGEEYELKIDKAPQNVDSA-------LTQ- 381 (450)
T ss_dssp GSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCSH--HHHHHHHH-TTCCCCCCCCCCCSCCCCH-------HHH-
T ss_pred cHHHHHHHHHHHHHH----cCChhhHHHHHHHHhcCCCh--HHHHHHHH-cCCCCCCCcCCCCccHHHh-------hhc-
Confidence 357788999999887 78899999999998865331 11222221 12110 1010000 000
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhchhcHHHHHHHHHh
Q 020091 263 HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 323 (331)
Q Consensus 263 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~l~~~~~~l~~~~~~~a~~~~~~ 323 (331)
+ .-+..+..++..|....|...+..+++..+..-...++.+...+.. ...++....+
T Consensus 382 ~--~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~--~~~aI~a~~~ 438 (450)
T d1qsaa1 382 G--PEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQW--WDLSVQATIA 438 (450)
T ss_dssp S--HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred C--hHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--hhHHHHHHHH
Confidence 1 1123345566778888888877777766666655555555544433 3344444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.48 E-value=7.8 Score=33.13 Aligned_cols=116 Identities=14% Similarity=0.024 Sum_probs=66.7
Q ss_pred ccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CH-HHHHHHHHHHhcCCCccccH
Q 020091 173 PANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YV-RAMYNTSLCYSFGEGLPLSH 248 (331)
Q Consensus 173 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~G~g~~~d~~~A~~~~~~A~~~~-~~-~a~~~lg~~y~~g~g~~~~~ 248 (331)
.+|.+.|..++...... -.+.....+...........+..+.+..++......+ +. .....++..+.. .|.
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~-----~~~ 301 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT-----GDR 301 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH-----TCH
T ss_pred ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHc-----CCh
Confidence 45566666666554332 2333333333333222222445677777777665543 22 223344444432 377
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 020091 249 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 293 (331)
Q Consensus 249 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~~ 293 (331)
..+..++...... ......|.+|..+...|+.++|..+|..++..
T Consensus 302 ~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~ 348 (450)
T d1qsaa1 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (450)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence 7777777764322 34677788998888899999998888887753
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.59 E-value=0.54 Score=31.43 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=22.0
Q ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 020091 244 LPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 292 (331)
Q Consensus 244 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~A~~ 292 (331)
...+..+|+....+|++ +...|++++|+.+|..|++
T Consensus 8 ~~~~~~~A~~l~~~Av~-------------~D~~g~y~eA~~~Y~~aie 43 (93)
T d1wfda_ 8 QDSDSTAAVAVLKRAVE-------------LDAESRYQQALVCYQEGID 43 (93)
T ss_dssp CCCHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHH
Confidence 34456666666666655 4556666666666666654
|
| >d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein NTHI1458 species: Haemophilus influenzae [TaxId: 727]
Probab=84.05 E-value=4.1 Score=30.56 Aligned_cols=78 Identities=10% Similarity=-0.048 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 020091 124 ALDSFLKGAARGSTLA-MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAAQPANAEEAVKLLYQASIAGHVRAQYQLALC 201 (331)
Q Consensus 124 A~~~~~~A~~~~~~~a-~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 201 (331)
-+..|.|++...+++| ++.|+.++..++|..--..-+...+..+-..+.+.-...|+..++..-..|.|++...|+.+
T Consensus 7 ~iSA~~KSiRgSD~dAaly~larml~~GeDp~~i~RRl~~~AsEDIGlAdp~al~~a~~~~~a~~~iG~PE~~i~Laqa 85 (184)
T d3bgea1 7 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQA 85 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCChHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3456777888778775 56688888777787654444444444444444566677777777777778888888888764
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| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=83.60 E-value=3 Score=29.46 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=42.3
Q ss_pred CCchHHHhHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 020091 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA 143 (331)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~LG~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l 143 (331)
.++.-++...++..+++ .+.-+|..+..+|..|.. -|+..+|-+.+++|++.|.-+|+.+.
T Consensus 98 ~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kk----ig~~re~nell~~ACe~G~KeAC~~i 158 (161)
T d1wy6a1 98 IQGKRDKLEEIGREILK--NNEVSASILVAIANALRR----VGDERDATTLLIEACKKGEKEACNAV 158 (161)
T ss_dssp HTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHH----hcchhhHHHHHHHHHHHhHHHHHHHh
Confidence 34555555555555555 233478888888888888 78888888888888888888877654
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