Citrus Sinensis ID: 020097

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSALGI
cccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccc
ccHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHcHccHHHHHHHHHHHcccccccccccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHEcccccEEccccccEEHHHHHHHHHHHHHHcHHHHHccccccccccccHHHHHHHHHccEcccccEEccccccEcccHHHHcccHHHHHccHHHccHHHHHHHHHccEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHcccc
mmmyeslphhyqyqEINRITLAHFAISGLCLLgaldrvdkdaVSDWVLSlqahpsnkadltngefygfhgspssqlhpddngvlmhngsnLASTYCALAILKAVGYNFANIDSKSILTSMRNlqqhdgsfmpihfgaekdLRFVYCAAAICFLLEDWSGMDRERAKAYILNCqsydggfgltpgseshgggtyCAVASLRLMGfiednvlskntsssiidlpLLLSWCLQRQaadggfqgrankpsdtcyAFWIGSVLRMLGGYNLIDKEALRGFLLTCQsqyggfgkcpgdlpdlyhsfygytafslleepglnplcaelgmtEFSALGI
MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGgfqgrankpSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSALGI
MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTsssiidlplllsWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSALGI
*******PHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAH*****DLTNGEFYGF**************VLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMT*******
MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSALG*
MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSALGI
MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNK******EFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSA*G*
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iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCAELGMTEFSALGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query331 2.2.26 [Sep-21-2011]
P53610377 Geranylgeranyl transferas yes no 0.903 0.793 0.396 1e-60
Q8BUY9377 Geranylgeranyl transferas yes no 0.882 0.774 0.397 3e-60
P53609377 Geranylgeranyl transferas yes no 0.882 0.774 0.394 6e-60
Q5EAD5377 Geranylgeranyl transferas yes no 0.903 0.793 0.393 9e-60
Q55DA3352 Geranylgeranyl transferas yes no 0.942 0.886 0.361 2e-49
B0G172339 Probable geranylgeranyl t no no 0.776 0.758 0.339 2e-37
Q5E9B3331 Geranylgeranyl transferas no no 0.858 0.858 0.315 7e-35
P53611331 Geranylgeranyl transferas no no 0.858 0.858 0.315 1e-34
Q08603331 Geranylgeranyl transferas no no 0.861 0.861 0.298 1e-34
P53612339 Geranylgeranyl transferas no no 0.861 0.840 0.295 3e-34
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1 Back     alignment and function desciption
 Score =  233 bits (595), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/315 (39%), Positives = 185/315 (58%), Gaps = 16/315 (5%)

Query: 5   ESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGE 64
           + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ  P+   D +N +
Sbjct: 34  QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLD 91

Query: 65  FYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSM 120
             GF GS       +P  N    H  +  ++A TY  L+ L  +G + + +D ++ L  +
Sbjct: 92  RCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGL 151

Query: 121 RNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFG 180
           R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A +YI    SYD G  
Sbjct: 152 RALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLA 211

Query: 181 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG 240
              G ESHGG T+C +ASL LMG +E+    K       +L  +  WC+ RQ    G+ G
Sbjct: 212 QGAGLESHGGSTFCGIASLCLMGKLEEVFSEK-------ELNRIKRWCIMRQ--QNGYHG 262

Query: 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHS 299
           R NKP DTCY+FW+G+ L++L  +   + E  R ++L+ Q +  GGF K P   PD  H+
Sbjct: 263 RPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHA 322

Query: 300 FYGYTAFSLLEEPGL 314
           ++G    SL+EE G+
Sbjct: 323 YFGICGLSLMEESGI 337
Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. Acts on the Rac1, Rac2, Rap1A and Rap1B proteins. The beta subunit is responsible for peptide-binding.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 9
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=2 SV=1 Back     alignment and function description
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2 Back     alignment and function description
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1 Back     alignment and function description
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1 Back     alignment and function description
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 Back     alignment and function description
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 Back     alignment and function description
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 Back     alignment and function description
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1 Back     alignment and function description
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
255583055370 geranylgeranyl transferase type I beta s 0.996 0.891 0.742 1e-146
225449493351 PREDICTED: geranylgeranyl transferase ty 0.993 0.937 0.768 1e-145
224100967372 predicted protein [Populus trichocarpa] 0.996 0.887 0.754 1e-145
449449990363 PREDICTED: geranylgeranyl transferase ty 0.996 0.909 0.736 1e-144
356499650355 PREDICTED: geranylgeranyl transferase ty 0.996 0.929 0.693 1e-136
15225494375 geranylgeranyl transferase type-1 subuni 0.996 0.88 0.730 1e-134
37787343359 geranylgeranyltransferase type I beta su 0.996 0.919 0.687 1e-133
297823845329 geranylgeranyltransferase-I beta subunit 0.993 1.0 0.726 1e-132
356568996347 PREDICTED: geranylgeranyl transferase ty 0.972 0.927 0.695 1e-132
388517199341 unknown [Lotus japonicus] 0.996 0.967 0.687 1e-131
>gi|255583055|ref|XP_002532295.1| geranylgeranyl transferase type I beta subunit, putative [Ricinus communis] gi|223527997|gb|EEF30079.1| geranylgeranyl transferase type I beta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/330 (74%), Positives = 287/330 (86%)

Query: 2   MMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLT 61
           MMY+ LP++YQ QEINR+TLA+F ISGL +L ALDRVDKDAV+ WVLS QAHP +K+ L 
Sbjct: 41  MMYQMLPNYYQSQEINRLTLAYFTISGLHILNALDRVDKDAVASWVLSFQAHPEDKSQLN 100

Query: 62  NGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMR 121
           NG+FYGF GS SSQ     NGV +H  S+LAS+Y ALAILK VGYN +N+DSKSILTSMR
Sbjct: 101 NGQFYGFQGSRSSQFPLACNGVSVHTLSHLASSYSALAILKIVGYNLSNLDSKSILTSMR 160

Query: 122 NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGL 181
           NLQQ DGSF+PIH GAE DLRF+YCAAAICF+LEDWSGMD+E+AK YI+ CQSYDGGFG+
Sbjct: 161 NLQQPDGSFLPIHIGAETDLRFIYCAAAICFMLEDWSGMDKEQAKEYIVRCQSYDGGFGM 220

Query: 182 TPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQGR 241
             GSESHGGGT+CAVASLRLMGFI+D++LSK+   SIID+PLLL WCL+RQAADGGFQGR
Sbjct: 221 VSGSESHGGGTFCAVASLRLMGFIDDDLLSKDEPPSIIDVPLLLEWCLKRQAADGGFQGR 280

Query: 242 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFY 301
            NKP+DTCYAFW+G+VLR+LGGY  ID +ALRGFL+TCQS+YGGF K PG+LPD+YHS+Y
Sbjct: 281 LNKPTDTCYAFWVGAVLRILGGYKFIDGKALRGFLITCQSKYGGFSKFPGELPDIYHSYY 340

Query: 302 GYTAFSLLEEPGLNPLCAELGMTEFSALGI 331
           GYTAFSLLEEPGLN LC ELG+T+ +ALGI
Sbjct: 341 GYTAFSLLEEPGLNSLCVELGITDVAALGI 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449493|ref|XP_002278609.1| PREDICTED: geranylgeranyl transferase type-1 subunit beta [Vitis vinifera] gi|296086228|emb|CBI31669.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100967|ref|XP_002312088.1| predicted protein [Populus trichocarpa] gi|222851908|gb|EEE89455.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449990|ref|XP_004142747.1| PREDICTED: geranylgeranyl transferase type-1 subunit beta-like [Cucumis sativus] gi|449483868|ref|XP_004156717.1| PREDICTED: geranylgeranyl transferase type-1 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356499650|ref|XP_003518650.1| PREDICTED: geranylgeranyl transferase type-1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|15225494|ref|NP_181487.1| geranylgeranyl transferase type-1 subunit beta [Arabidopsis thaliana] gi|3355484|gb|AAC27846.1| putative geranylgeranyl transferase type I beta subunit [Arabidopsis thaliana] gi|27311719|gb|AAO00825.1| putative geranylgeranyl transferase type I beta subunit [Arabidopsis thaliana] gi|30725602|gb|AAP37823.1| At2g39550 [Arabidopsis thaliana] gi|330254599|gb|AEC09693.1| geranylgeranyl transferase type-1 subunit beta [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|37787343|gb|AAP50511.1| geranylgeranyltransferase type I beta subunit [Catharanthus roseus] Back     alignment and taxonomy information
>gi|297823845|ref|XP_002879805.1| geranylgeranyltransferase-I beta subunit [Arabidopsis lyrata subsp. lyrata] gi|297325644|gb|EFH56064.1| geranylgeranyltransferase-I beta subunit [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356568996|ref|XP_003552693.1| PREDICTED: geranylgeranyl transferase type-1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|388517199|gb|AFK46661.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
TAIR|locus:2039752375 PGGT-I [Arabidopsis thaliana ( 0.996 0.88 0.703 1.1e-126
ZFIN|ZDB-GENE-050913-85355 pggt1b "protein geranylgeranyl 0.927 0.864 0.408 2.7e-59
RGD|621754377 Pggt1b "protein geranylgeranyl 0.897 0.787 0.399 1.5e-58
UNIPROTKB|P53610377 Pggt1b "Geranylgeranyl transfe 0.897 0.787 0.399 1.5e-58
MGI|MGI:1917514377 Pggt1b "protein geranylgeranyl 0.897 0.787 0.399 3.2e-58
UNIPROTKB|Q5EAD5377 PGGT1B "Geranylgeranyl transfe 0.897 0.787 0.396 1.4e-57
UNIPROTKB|P53609377 PGGT1B "Geranylgeranyl transfe 0.897 0.787 0.392 5.9e-57
UNIPROTKB|E2QZU5377 PGGT1B "Uncharacterized protei 0.897 0.787 0.392 7.5e-57
UNIPROTKB|F1NE58332 PGGT1B "Uncharacterized protei 0.864 0.861 0.390 3.7e-55
UNIPROTKB|F1N4H5377 PGGT1B "Geranylgeranyl transfe 0.897 0.787 0.373 7.2e-52
TAIR|locus:2039752 PGGT-I [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 232/330 (70%), Positives = 266/330 (80%)

Query:     2 MMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLT 61
             MMYE LP+HYQ QEINR+TLAHF ISGL  LGA DRVDKD V+ WVLS QA P+N+  L 
Sbjct:    46 MMYELLPYHYQSQEINRLTLAHFIISGLHFLGARDRVDKDVVAKWVLSFQAFPTNRVSLK 105

Query:    62 NGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMR 121
             +GEFYGF GS SSQ   D+NG L HNGS+LASTYCALAILK +G++ + IDSKS+L SM 
Sbjct:   106 DGEFYGFFGSRSSQFPIDENGDLKHNGSHLASTYCALAILKVIGHDLSTIDSKSLLISMI 165

Query:   122 NLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGL 181
             NLQQ DGSFMPIH G E DLRFVYCAAAIC++L+ WSGMD+E AK YILNCQSYDGGFGL
Sbjct:   166 NLQQDDGSFMPIHIGGETDLRFVYCAAAICYMLDSWSGMDKESAKNYILNCQSYDGGFGL 225

Query:   182 TPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTXXXXXXXXXXXXWCLQRQAADGGFQGR 241
              PGSESHGG TYCA+ASLRLMG+I  ++LS ++            WCLQRQA DGGFQGR
Sbjct:   226 IPGSESHGGATYCAIASLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGR 285

Query:   242 ANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQYGGFGKCPGDLPDLYHSFY 301
              NKPSDTCYAFWIG+VL+++GG  LIDK ALR FL++CQS+YGGF K PG LPDLYHS+Y
Sbjct:   286 TNKPSDTCYAFWIGAVLKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYY 345

Query:   302 GYTAFSLLEEPGLNPLCAELGMTEFSALGI 331
             GYTAFSLLEE GL+PLC ELG+   +A GI
Sbjct:   346 GYTAFSLLEEQGLSPLCPELGLPLLAAPGI 375
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=IMP;IDA
GO:0005953 "CAAX-protein geranylgeranyltransferase complex" evidence=IPI
GO:0018344 "protein geranylgeranylation" evidence=IMP;IDA
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=TAS
ZFIN|ZDB-GENE-050913-85 pggt1b "protein geranylgeranyltransferase type I, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|621754 Pggt1b "protein geranylgeranyltransferase type I, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P53610 Pggt1b "Geranylgeranyl transferase type-1 subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1917514 Pggt1b "protein geranylgeranyltransferase type I, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EAD5 PGGT1B "Geranylgeranyl transferase type-1 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P53609 PGGT1B "Geranylgeranyl transferase type-1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZU5 PGGT1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE58 PGGT1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4H5 PGGT1B "Geranylgeranyl transferase type-1 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P32434PGTB1_SCHPO2, ., 5, ., 1, ., 5, 90.32110.93950.8760yesno
Q55DA3PGTB1_DICDI2, ., 5, ., 1, ., 5, 90.36110.94250.8863yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.58LOW CONFIDENCE prediction!
4th Layer2.5.1.590.824
3rd Layer2.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 1e-122
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 1e-100
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 3e-61
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 5e-61
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 2e-53
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 5e-51
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 3e-46
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 2e-30
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 3e-13
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 9e-13
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 8e-11
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 1e-09
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 5e-08
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 2e-06
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 8e-06
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 3e-05
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 0.001
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information 
 Score =  351 bits (904), Expect = e-122
 Identities = 134/316 (42%), Positives = 178/316 (56%), Gaps = 26/316 (8%)

Query: 2   MMYESLPHHYQYQEINRITLAHFAISGLCLLGALDR---VDKDAVSDWVLSLQAHPSNKA 58
              + LP  YQ  + NR+T+A FA+SGL LLGALD     +KD + +W+ SLQ   +   
Sbjct: 10  RCLQLLPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSN--- 66

Query: 59  DLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILT 118
            L  G F G                  ++  NLA TY AL  L  +G + + +D K+IL 
Sbjct: 67  -LPRGGFRGSSTLGLP------GTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILN 119

Query: 119 SMRNLQQHDGSFMPIHF--GAEKDLRFVYCAAAICFLLEDWS--GMDRERAKAYILNCQS 174
            +  LQ  DGSF  +    G E D+RF YCA AIC++L+DWS   +D+E+   YI + QS
Sbjct: 120 FLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQS 179

Query: 175 YDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAA 234
           YDGGFG  PG ESHGG T+CA+ASL L+G +E          S   L  L  W + RQ +
Sbjct: 180 YDGGFGQGPGLESHGGSTFCAIASLSLLGKLE--------ELSEKFLERLKRWLVHRQVS 231

Query: 235 DGGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDL 293
             GF GR NKP+DTCY+FW+G+ L++L  + LID E  R +LL+ Q    GGF K P   
Sbjct: 232 GTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSH 291

Query: 294 PDLYHSFYGYTAFSLL 309
           PD  HS+ G  A SL+
Sbjct: 292 PDPLHSYLGLAALSLI 307

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 331
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
PLN02710439 farnesyltranstransferase subunit beta 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
PLN02710 439 farnesyltranstransferase subunit beta 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 99.97
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.97
KOG0367347 consensus Protein geranylgeranyltransferase Type I 99.96
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.91
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.87
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.86
COG1689274 Uncharacterized protein conserved in archaea [Func 99.86
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.86
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.85
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.85
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.84
PLN02993763 lupeol synthase 99.84
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.83
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.83
PLN03012759 Camelliol C synthase 99.82
PLN02993763 lupeol synthase 99.82
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.82
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.81
PLN03012759 Camelliol C synthase 99.81
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.79
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.77
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.66
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.62
COG1689274 Uncharacterized protein conserved in archaea [Func 99.56
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.39
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.35
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.33
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.28
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.26
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.26
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.19
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.17
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.06
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.89
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.85
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.61
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.14
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.05
PLN02592 800 ent-copalyl diphosphate synthase 97.43
PLN02279 784 ent-kaur-16-ene synthase 97.01
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 96.73
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 96.13
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 95.51
PF05817 636 Ribophorin_II: Oligosaccharyltransferase subunit R 93.47
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 90.13
PF05817 636 Ribophorin_II: Oligosaccharyltransferase subunit R 88.32
PLN02592 800 ent-copalyl diphosphate synthase 87.05
PLN02279 784 ent-kaur-16-ene synthase 82.74
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-82  Score=561.40  Aligned_cols=319  Identities=49%  Similarity=0.860  Sum_probs=296.7

Q ss_pred             CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020097            1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDD   80 (331)
Q Consensus         1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~   80 (331)
                      +|||+.||++|+++|.||++++||++++|++||+++..+++++|+||++.|+.|...   .+--++||.|+.+..+|.++
T Consensus        21 ~RhL~llP~~y~shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr---~~~k~~GF~Gsr~~~~p~~~   97 (347)
T KOG0367|consen   21 ERHLQLLPSPYQSHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDR---TNLKICGFRGSRSMNIPIAT   97 (347)
T ss_pred             HHHHHhCCCcccccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccC---CCceeeeeeeeccccCCCCC
Confidence            489999999999999999999999999999999999999999999999999977521   22238999999999888775


Q ss_pred             CCCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCCCCcc
Q 020097           81 NGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGM  160 (331)
Q Consensus        81 ~~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~  160 (331)
                      .   .+|.||+++||.++.+|+.||++++++||+.+++++..+|++||+|.+.+.|+|+|||++|||+++++||+.++.+
T Consensus        98 ~---~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~i  174 (347)
T KOG0367|consen   98 N---TYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGI  174 (347)
T ss_pred             C---CCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcccccc
Confidence            3   5789999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             cHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCccccC
Q 020097          161 DRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADGGFQG  240 (331)
Q Consensus       161 ~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dGGf~g  240 (331)
                      |+++++.||++||++|||||..|+.|||+|+||||||+|++++++-++.+     ++..+++++++|+.+||..+|||+|
T Consensus       175 D~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l-----~~~~~~erlirWli~RQ~~sgGfqG  249 (347)
T KOG0367|consen  175 DKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEEL-----SNTSKVERLIRWLIQRQVSSGGFQG  249 (347)
T ss_pred             CHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhh-----ccccCHHHHHHHHHHHhhccCCcCC
Confidence            99999999999999999999999999999999999999999998822211     1245689999999999999999999


Q ss_pred             CCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc
Q 020097          241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLNPLCA  319 (331)
Q Consensus       241 r~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~~~~~~  319 (331)
                      |+||++||||+||++++|++|+...++|.+.+.+||.+||.. .|||++.|+..||++|||++++||++++++++.||+|
T Consensus       250 R~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~~~~v~p  329 (347)
T KOG0367|consen  250 RTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKGLSPVCP  329 (347)
T ss_pred             CCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCCCCCCCc
Confidence            999999999999999999999999999999999999999998 6999999999999999999999999999999999999


Q ss_pred             cccccccccCC
Q 020097          320 ELGMTEFSALG  330 (331)
Q Consensus       320 ~~~~~~~~~~~  330 (331)
                      .++||.++++.
T Consensus       330 ~l~~s~~~~~r  340 (347)
T KOG0367|consen  330 SLNMSMRASER  340 (347)
T ss_pred             cccccHHHHHH
Confidence            99999987653

>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
1n4p_B377 Protein Geranylgeranyltransferase Type-I Complexed 7e-61
1dce_B331 Crystal Structure Of Rab Geranylgeranyltransferase 8e-35
3pz1_B330 Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) 8e-35
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 7e-25
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 7e-25
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 7e-25
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 7e-25
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 8e-25
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 8e-25
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 8e-25
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 8e-25
2h6g_B437 W102t Protein Farnesyltransferase Mutant Complexed 9e-25
1jcq_B437 Crystal Structure Of Human Protein Farnesyltransfer 1e-24
2h6i_B437 W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN 2e-24
2h6h_B437 Y365f Protein Farnesyltransferase Mutant Complexed 3e-24
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 7e-24
3dra_B390 Candida Albicans Protein Geranylgeranyltransferase- 3e-16
3q73_B520 Cryptococcus Neoformans Protein Farnesyltransferase 1e-09
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377 Back     alignment and structure 
Iteration: 1

 Score =  230 bits (587), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 182/315 (57%), Gaps = 16/315 (5%)
Query: 5   ESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGE 64
           + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ  P+   D +N +
Sbjct: 34  QVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLD 91
Query: 65  FYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSM 120
             GF GS       +P  N    H  +  ++A TY  L+ L  +G + + +D ++ L  +
Sbjct: 92  RCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGL 151
Query: 121 RNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFG 180
           R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A +YI    SYD G  
Sbjct: 152 RALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLA 211
Query: 181 LTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTXXXXXXXXXXXXWCLQRQAADGGFQG 240
              G ESHGG T+C +ASL LMG +E+    K              WC+ RQ    G+ G
Sbjct: 212 QGAGLESHGGSTFCGIASLCLMGKLEEVFSEKE-------LNRIKRWCIMRQ--QNGYHG 262
Query: 241 RANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHS 299
           R NKP DTCY+FW+G+ L++L  +   + E  R ++L+ Q +  GGF K P   PD  H+
Sbjct: 263 RPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHA 322
Query: 300 FYGYTAFSLLEEPGL 314
           ++G    SL+EE G+
Sbjct: 323 YFGICGLSLMEESGI 337
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331 Back     alignment and structure
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437 Back     alignment and structure
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437 Back     alignment and structure
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437 Back     alignment and structure
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390 Back     alignment and structure
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 1e-97
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 1e-82
3dss_B 331 Geranylgeranyl transferase type-2 subunit beta; pr 2e-11
3dss_B 331 Geranylgeranyl transferase type-2 subunit beta; pr 4e-06
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 2e-78
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 4e-78
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 2e-73
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 1e-21
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 2e-05
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 3e-04
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
 Score =  292 bits (748), Expect = 1e-97
 Identities = 122/330 (36%), Positives = 186/330 (56%), Gaps = 16/330 (4%)

Query: 1   MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADL 60
               + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ  P+   D 
Sbjct: 30  QRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DR 87

Query: 61  TNGEFYGFHGSPSSQLHPDD----NGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSI 116
           +N +  GF GS    +  +          ++  ++A TY  L+ L  +G + + +D ++ 
Sbjct: 88  SNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEAC 147

Query: 117 LTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYD 176
           L  +R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A +YI    SYD
Sbjct: 148 LAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYD 207

Query: 177 GGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG 236
            G     G ESHGG T+C +ASL LMG +E+         S  +L  +  WC+ RQ    
Sbjct: 208 NGLAQGAGLESHGGSTFCGIASLCLMGKLEE-------VFSEKELNRIKRWCIMRQ--QN 258

Query: 237 GFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTC-QSQYGGFGKCPGDLPD 295
           G+ GR NKP DTCY+FW+G+ L++L  +   + E  R ++L+      GGF K P   PD
Sbjct: 259 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPD 318

Query: 296 LYHSFYGYTAFSLLEEPGLNPLCAELGMTE 325
             H+++G    SL+EE G+  +   L ++ 
Sbjct: 319 ALHAYFGICGLSLMEESGICKVHPALNVST 348
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 100.0
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.91
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.89
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.88
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.82
2wy7_A310 Complement C3D fragment; immune system, immune res 99.6
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.57
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.4
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.21
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.16
2wy7_A310 Complement C3D fragment; immune system, immune res 99.1
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.08
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.08
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.66
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.63
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.59
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 98.56
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.44
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.43
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.26
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 98.24
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.17
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.05
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.05
3prx_B 1642 Cobra venom factor; immune system, complement, imm 98.0
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 97.85
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 97.68
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 97.64
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.55
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 97.53
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.24
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 97.18
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 97.17
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 97.12
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.82
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 96.5
3prx_B 1642 Cobra venom factor; immune system, complement, imm 95.49
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 90.82
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 90.77
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 88.31
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 87.89
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
Probab=100.00  E-value=3.2e-77  Score=570.64  Aligned_cols=315  Identities=38%  Similarity=0.734  Sum_probs=282.0

Q ss_pred             CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCC-CCCCCccccCCCCCCCCCCC
Q 020097            1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKAD-LTNGEFYGFHGSPSSQLHPD   79 (331)
Q Consensus         1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~-~~dg~~ggf~~~~~~~~~~~   79 (331)
                      +|+|+.||.+|+++|++|+|++||+|++|+|||.++.++++++++||++||+.|.+... .+||||+||.+..   .|+.
T Consensus        30 ~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~---~p~~  106 (377)
T 1n4q_B           30 QRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLG---IPFN  106 (377)
T ss_dssp             HHHHHEECGGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTC---CCCC
T ss_pred             HHHhhcCCccccccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccC---CChh
Confidence            36888999999999999999999999999999998778899999999999986643211 1467777777652   2332


Q ss_pred             CC----CCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhC
Q 020097           80 DN----GVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLE  155 (331)
Q Consensus        80 ~~----~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~  155 (331)
                      +.    ..+++|.+|+.+||+||++|.++|++++.++++++++||+++|++||+|...+.+++.|+|+||||++++.+|+
T Consensus       107 d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg  186 (377)
T 1n4q_B          107 PSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLN  186 (377)
T ss_dssp             SSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTT
T ss_pred             hhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhc
Confidence            21    13568899999999999999999998999999999999999999999998764558999999999999999999


Q ss_pred             CCCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCC
Q 020097          156 DWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAAD  235 (331)
Q Consensus       156 ~~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~d  235 (331)
                      .++.++++++++||++|||+|||||..|+.|||+++||||+++|.+++..+...       ...+++++++||.+||  +
T Consensus       187 ~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~-------~~~~~~rli~wL~~rQ--~  257 (377)
T 1n4q_B          187 NWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF-------SEKELNRIKRWCIMRQ--Q  257 (377)
T ss_dssp             CGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHS-------CHHHHHHHHHHHHTTB--S
T ss_pred             CCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCccccc-------chhhHHHHHHHHHhcC--C
Confidence            888889999999999999999999999999999999999999999999875210       0126899999999999  7


Q ss_pred             ccccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccCC-CCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCC
Q 020097          236 GGFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQSQ-YGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGL  314 (331)
Q Consensus       236 GGf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~  314 (331)
                      |||+|||||.+|+|||||++++|.+|+..+++|.+++++||++||++ +|||+++|++.||++||||+|++|++++++++
T Consensus       258 gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~~l  337 (377)
T 1n4q_B          258 NGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGI  337 (377)
T ss_dssp             SSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCTTC
T ss_pred             CCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999998899999999999999999 99999999999999999999999999999999


Q ss_pred             CCCCccccccccc
Q 020097          315 NPLCAELGMTEFS  327 (331)
Q Consensus       315 ~~~~~~~~~~~~~  327 (331)
                      .+|||.+|||.+.
T Consensus       338 ~~i~p~~~i~~~~  350 (377)
T 1n4q_B          338 CKVHPALNVSTRT  350 (377)
T ss_dssp             CCEETTTTEEHHH
T ss_pred             CCCCCcccCCHHH
Confidence            9999999999654
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 331
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 1e-101
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 2e-84
d3dssb1 325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 1e-13
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 5e-79
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 1e-04
d2sqca2271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 4e-04
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 0.001
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 0.004
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  298 bits (764), Expect = e-101
 Identities = 125/330 (37%), Positives = 185/330 (56%), Gaps = 16/330 (4%)

Query: 1   MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADL 60
               + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SLQ  P    D 
Sbjct: 13  QRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLP--TEDR 70

Query: 61  TNGEFYGFHGSPS--SQLHPDDNGVLMHNG--SNLASTYCALAILKAVGYNFANIDSKSI 116
           +N +  GF GS       +P  N    H     ++A TY  L+ L  +G + + +D ++ 
Sbjct: 71  SNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEAC 130

Query: 117 LTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYD 176
           L  +R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A +YI    SYD
Sbjct: 131 LAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYD 190

Query: 177 GGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG 236
            G     G ESHGG T+C +ASL LMG +E+    K       +L  +  WC+ RQ    
Sbjct: 191 NGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEK-------ELNRIKRWCIMRQ--QN 241

Query: 237 GFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTC-QSQYGGFGKCPGDLPD 295
           G+ GR NKP DTCY+FW+G+ L++L  +   + E  R ++L+      GGF K P   PD
Sbjct: 242 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPD 301

Query: 296 LYHSFYGYTAFSLLEEPGLNPLCAELGMTE 325
             H+++G    SL+EE G+  +   L ++ 
Sbjct: 302 ALHAYFGICGLSLMEESGICKVHPALNVST 331
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.9
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.87
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.83
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.82
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.43
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.33
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.58
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.27
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.22
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.2
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.01
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 97.91
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.84
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 97.83
d1hzfa_ 326 C4adg fragment of complement factor C4a {Human (Ho 97.69
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 96.06
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.1e-79  Score=570.44  Aligned_cols=316  Identities=39%  Similarity=0.745  Sum_probs=283.4

Q ss_pred             CccccCCCcchhhhhhhhhHHHHHhhhHHhhcCCCCCcChHHHHHHHHHhccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020097            1 MMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLQAHPSNKADLTNGEFYGFHGSPSSQLHPDD   80 (331)
Q Consensus         1 ~~~l~~lp~~~~~~d~~r~~~~y~~l~~L~lL~~~~~~~~~~~~~~i~~~q~~~~~~~~~~dg~~ggf~~~~~~~~~~~~   80 (331)
                      +|||+.||.+|+++|++|+|++||+|++|+|||+++..+++++++||++||+.+....  .+...+||+++.....+..+
T Consensus        13 ~~~l~~lp~~~~~~D~~R~~~~Yw~l~sL~lL~~l~~~~~~~~i~~l~~~q~~~~~~~--~~~~~~gf~gs~~~~~~~~~   90 (346)
T d1n4qb_          13 QRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDR--SNLDRCGFRGSSYLGIPFNP   90 (346)
T ss_dssp             HHHHHEECGGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTC--TTGGGCEECSSSTTCCCCCS
T ss_pred             HHHHhcCCHHHHHHHhhhHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhccccccc--cCccccCccCcccccCCCCc
Confidence            3789999999999999999999999999999999988899999999999998654221  22235788887765544333


Q ss_pred             C----CCccCCCCcHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhccCCCCCCcccccCCccChhHHHHHHHHHHHhCC
Q 020097           81 N----GVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLED  156 (331)
Q Consensus        81 ~----~~~~~~~~~l~~Ty~Al~~L~~lg~~~~~~~~~~~~~~l~~~q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~  156 (331)
                      .    ..-.++.+|+.+||+||++|.+++++++.+||+++++||.++|++||+|...+.++|.|+|+||||++++++|+.
T Consensus        91 ~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~  170 (346)
T d1n4qb_          91 SKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN  170 (346)
T ss_dssp             SCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCC
Confidence            2    123468899999999999999999999999999999999999999999987667789999999999999999999


Q ss_pred             CCcccHHHHHHHHHhcCCCCCCcccCCCCCCChhhHHHHHHHHHHcCCccccccccCCCCCCCCHHHHHHHHHhcCCCCc
Q 020097          157 WSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNTSSSIIDLPLLLSWCLQRQAADG  236 (331)
Q Consensus       157 ~~~~~~~~~~~~I~~~Q~~dGGFg~~p~~esh~~~Ty~AlaaL~llg~~~~~~~~~~~~~~~~~~~~~~~wL~~~Q~~dG  236 (331)
                      +++++++++++||++|||+|||||..|+.|||+++|||||++|.++++.+.-.       ...+++++++||.+||  +|
T Consensus       171 ~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~-------~~~~~~~l~~WL~~Rq--~g  241 (346)
T d1n4qb_         171 WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF-------SEKELNRIKRWCIMRQ--QN  241 (346)
T ss_dssp             GGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHS-------CHHHHHHHHHHHHTTB--SS
T ss_pred             CccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhccccccc-------chhhHHHHHHHHHhcc--cC
Confidence            88999999999999999999999999999999999999999999999875210       0236889999999999  59


Q ss_pred             cccCCCCCCCCcchhhHHHHHHHHhCCCCCCCHHHHHHHHHhccC-CCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 020097          237 GFQGRANKPSDTCYAFWIGSVLRMLGGYNLIDKEALRGFLLTCQS-QYGGFGKCPGDLPDLYHSFYGYTAFSLLEEPGLN  315 (331)
Q Consensus       237 Gf~gr~~k~~D~~yt~~~~a~L~lL~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~p~~~~D~~hT~~al~aLsll~~~~~~  315 (331)
                      ||+|||||.+|+||+||++++|.+|+..+++|.+++.+||+.||+ ..|||+++|++.||++||||+|++||+++++++.
T Consensus       242 Gf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~~~l~gLsl~~~~~l~  321 (346)
T d1n4qb_         242 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGIC  321 (346)
T ss_dssp             SBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCTTCC
T ss_pred             CcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence            999999999999999999999999999899999999999988865 5899999999999999999999999999999999


Q ss_pred             CCCccccccccc
Q 020097          316 PLCAELGMTEFS  327 (331)
Q Consensus       316 ~~~~~~~~~~~~  327 (331)
                      +|||.+|||++.
T Consensus       322 ~~~p~~~i~~~~  333 (346)
T d1n4qb_         322 KVHPALNVSTRT  333 (346)
T ss_dssp             CEETTTTEEHHH
T ss_pred             CcCCccCCCHHH
Confidence            999999999865
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure