Citrus Sinensis ID: 020113
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | 2.2.26 [Sep-21-2011] | |||||||
| Q6Z9A3 | 361 | Probable mannose-1-phosph | yes | no | 1.0 | 0.916 | 0.786 | 1e-163 | |
| O22287 | 361 | Mannose-1-phosphate guany | yes | no | 1.0 | 0.916 | 0.789 | 1e-162 | |
| Q941T9 | 361 | Probable mannose-1-phosph | yes | no | 1.0 | 0.916 | 0.786 | 1e-162 | |
| Q84JH5 | 361 | Probable mannose-1-phosph | no | no | 1.0 | 0.916 | 0.792 | 1e-162 | |
| Q9M2S0 | 364 | Probable mannose-1-phosph | no | no | 1.0 | 0.909 | 0.730 | 1e-149 | |
| Q8H1Q7 | 331 | Probable mannose-1-phosph | no | no | 0.888 | 0.888 | 0.711 | 1e-128 | |
| Q54K39 | 359 | Mannose-1-phosphate guany | yes | no | 0.993 | 0.916 | 0.578 | 1e-117 | |
| Q9Y5P6 | 360 | Mannose-1-phosphate guany | yes | no | 0.996 | 0.916 | 0.551 | 1e-112 | |
| Q2YDJ9 | 360 | Mannose-1-phosphate guany | yes | no | 0.996 | 0.916 | 0.554 | 1e-112 | |
| Q8BTZ7 | 360 | Mannose-1-phosphate guany | yes | no | 0.996 | 0.916 | 0.548 | 1e-112 |
| >sp|Q6Z9A3|GMPP3_ORYSJ Probable mannose-1-phosphate guanylyltransferase 3 OS=Oryza sativa subsp. japonica GN=Os08g0237200 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/361 (78%), Positives = 310/361 (85%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL I ITCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYP +
Sbjct: 61 LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
+I+FH+ GGEA+IMV DEPSKYGVVVMEE TG VEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 LIKFHKNHGGEATIMVTKVDEPSKYGVVVMEEATGMVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIELKPTSIEKEVFP I+A+ KLFAMVLPGFWMD+GQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRISADAKLFAMVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
S+++LATG++I+GNVLVHE AKIG+GCLIGPD K
Sbjct: 241 SANRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACIS+SIIGWHSTVG+WAR+ENMTILGEDVHV DEVY+NG V+LPHKEIKSSI+ PEIV
Sbjct: 301 HACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVILPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3 |
| >sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1475), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/361 (78%), Positives = 310/361 (85%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KLEIKITCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M+EFH+ GGEASIM VDEPSKYGVVVMEE+TG+VEKFVEKPK +VGNKINAGIYLLN
Sbjct: 121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLD+IEL+PTSIEKE FP+IAA L+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
S +KL +G +I+GNVLV E A IG+GCLIGPD K
Sbjct: 241 SPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVG+WAR+ENMTILGEDVHV+DE+YSNG VVLPHKEIKS+I+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q941T9|GMPP2_ORYSJ Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os01g0847200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1474), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/361 (78%), Positives = 310/361 (85%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL I ITCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYP +
Sbjct: 61 LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
+I+FH+ GGEA+IM VDEPSKYGVVVMEE TG VEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 LIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIELKPTSIEKEVFP IA++ KLFA+VLPGFWMD+GQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIASDAKLFALVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
S+++LATG++I+GNVLVHE AKIG+GCLIGPD K
Sbjct: 241 STNRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVHIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACIS+SIIGWHSTVG+WAR+ENMTILGEDVHV DEVY+NG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q84JH5|GMPP1_ORYSJ Probable mannose-1-phosphate guanylyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0268400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 570 bits (1470), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/361 (79%), Positives = 307/361 (85%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDF NKPMILHQIEALK VGVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL IKITCSQETEPLGTAGPLALARDKL D SG+PFFVLNSDVISEYP +
Sbjct: 61 LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
+I+FH+ GGEA+IM VDEPSKYGVVVME+ T KVE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIELKPTSIEKEVFP IAA+N LFAMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
+ +KLA+G++++GNVLVHE A IG+GCLIGPD K
Sbjct: 241 APAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVG WARVENMTILGEDVHV DEVYSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q9M2S0|GMPP2_ARATH Probable mannose-1-phosphate guanylyltransferase 2 OS=Arabidopsis thaliana GN=At3g55590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/364 (73%), Positives = 300/364 (82%), Gaps = 33/364 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA+GV EVVLAINY+PE
Sbjct: 1 MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60
Query: 59 -VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP 117
VM F + E L IKITCSQETEPLGTAGPLALARDKL+D SG+PFFVLNSDVIS+YP
Sbjct: 61 LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120
Query: 118 LKQMIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
L++MI FH GGEASIMV DEPSKYGVVVMEE TG+VE+FVEKPK FVGNKINAGIY
Sbjct: 121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180
Query: 175 LLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 234
LLNPSVLDRIEL+PTSIEKE+FP+IA KL+AM+LPGFWMDIGQP+DYITGLRLYLD L
Sbjct: 181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240
Query: 235 QKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD------------------------- 269
+K S SKLATG +I+GNVLV E A+IG+GCLIGP+
Sbjct: 241 RKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVH 300
Query: 270 --KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327
++ACISSSIIGWHSTVG+WARVENM+ILG++V+V DE+Y NG VVL +KEIKS I+ P
Sbjct: 301 VKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKP 360
Query: 328 EIVM 331
+IVM
Sbjct: 361 DIVM 364
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q8H1Q7|GMPP3_ARATH Probable mannose-1-phosphate guanylyltransferase 3 OS=Arabidopsis thaliana GN=At4g30570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/326 (71%), Positives = 267/326 (81%), Gaps = 32/326 (9%)
Query: 21 VPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79
+PKPLVDF NKPMILHQIEALK GVTEVVLAIN+Q PEVMLNF+KE+EKKLEIKIT SQ
Sbjct: 1 MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60
Query: 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMV--- 136
ETEPLGTAGPLALARDKL+D+SG+PFFVLNSDVI EYPL +MIEFH+ EASIMV
Sbjct: 61 ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120
Query: 137 DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVF 196
D+PSKYGVVV EE T +VE FVEKPK+FVGNKINAGIYLL+PSVLDRIEL+ TSIEKE+F
Sbjct: 121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180
Query: 197 PEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVLVHE 256
P+IA+E KL+AMVLPGFWMDIGQPKDYITG R+YL+ L++ + +LATG NIIGNVLVHE
Sbjct: 181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVLVHE 240
Query: 257 GAKIGDGCLIGPD---------------------------KHACISSSIIGWHSTVGRWA 289
A IG+GCLIGPD +HACIS+SI+GW STVGRWA
Sbjct: 241 SAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIKEHACISNSIVGWDSTVGRWA 300
Query: 290 RVENMTILGEDVHVAD-EVYSNGAVV 314
RV N+T+LG+DV+VAD EVY++G V+
Sbjct: 301 RVFNITVLGKDVNVADAEVYNSGVVI 326
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q54K39|GMPPB_DICDI Mannose-1-phosphate guanyltransferase beta OS=Dictyostelium discoideum GN=gmppB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/361 (57%), Positives = 269/361 (74%), Gaps = 32/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKP+V+FANK MILHQIEAL +GV EVVLA+NY+P++M
Sbjct: 1 MKALILVGGFGTRLRPLTLSKPKPIVEFANKAMILHQIEALCKIGVNEVVLAVNYRPQLM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+L+ +EKKL IKI+ S ET PLGTAGPLALARD L D GEPFFVLNSD+I ++P
Sbjct: 61 SQYLEPYEKKLGIKISYSHETVPLGTAGPLALARDLLND--GEPFFVLNSDIICDFPFAD 118
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++ FH+ GGE +IMV +EPSKYGVVV +E G++ KFVEKP+ +VGNKINAG+Y+ N
Sbjct: 119 LLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIFN 178
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
P++LDRI+ KPTSIEKE+FP +AA+++L+ M L GFWMD+GQPKD+++G+ LYL+ L+
Sbjct: 179 PTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSK 238
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
LATG+ IIG VL+ + I GCLIGP+ K
Sbjct: 239 QPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIGK 298
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
++ I S+IIGW+S++G+W R+EN ++LGEDVHV+DE+Y NG +LPHK I SSI PEI+
Sbjct: 299 NSWIKSTIIGWNSSIGKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEII 358
Query: 331 M 331
M
Sbjct: 359 M 359
|
Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q9Y5P6|GMPPB_HUMAN Mannose-1-phosphate guanyltransferase beta OS=Homo sapiens GN=GMPPB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/361 (55%), Positives = 258/361 (71%), Gaps = 31/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+K E++L I+I+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
P+VL RI+L+PTSIEKEVFP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
+L +G I+GNVLV A+IG C IGP+
Sbjct: 240 QPERLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRS 299
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
H+ + S I+GW VG+W R+EN+T+LGEDV V DE+Y NGA VLPHK I S+ P I+
Sbjct: 300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359
Query: 331 M 331
M
Sbjct: 360 M 360
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q2YDJ9|GMPPB_BOVIN Mannose-1-phosphate guanyltransferase beta OS=Bos taurus GN=GMPPB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/361 (55%), Positives = 259/361 (71%), Gaps = 31/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPL DF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLADFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+K E+KL I+I+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG+V +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLKSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
+L +G I+GNVLV A+IG+ C IGP+
Sbjct: 240 HPEQLCSGPGIVGNVLVDPRARIGENCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
H+ + S I+GW VG+W R+EN+T+LGEDV V DE+Y NGA VLPHK I S+ P I+
Sbjct: 300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359
Query: 331 M 331
M
Sbjct: 360 M 360
|
Bos taurus (taxid: 9913) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q8BTZ7|GMPPB_MOUSE Mannose-1-phosphate guanyltransferase beta OS=Mus musculus GN=Gmppb PE=2 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/361 (54%), Positives = 258/361 (71%), Gaps = 31/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+K E++L I+I+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
P+VL RI+LKPTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
+L +G I+GNVLV A+IG C IGP+
Sbjct: 240 HPERLYSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
H+ + S I+GW VG+W R+EN+T+LGEDV V DE+Y NGA VLPHK I S+ P I+
Sbjct: 300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359
Query: 331 M 331
M
Sbjct: 360 M 360
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| 224087493 | 361 | predicted protein [Populus trichocarpa] | 1.0 | 0.916 | 0.842 | 1e-170 | |
| 224098483 | 361 | predicted protein [Populus trichocarpa] | 1.0 | 0.916 | 0.831 | 1e-169 | |
| 218117841 | 361 | GDP-D-mannose pyrophosphorylase [Prunus | 1.0 | 0.916 | 0.825 | 1e-168 | |
| 80973464 | 361 | GDP-mannose pyrophosphorylase [Malpighia | 1.0 | 0.916 | 0.819 | 1e-168 | |
| 224831509 | 361 | GMP [Carica papaya] | 1.0 | 0.916 | 0.831 | 1e-167 | |
| 224112691 | 361 | predicted protein [Populus trichocarpa] | 1.0 | 0.916 | 0.825 | 1e-167 | |
| 449441368 | 361 | PREDICTED: mannose-1-phosphate guanylylt | 1.0 | 0.916 | 0.831 | 1e-167 | |
| 225449380 | 361 | PREDICTED: mannose-1-phosphate guanylylt | 1.0 | 0.916 | 0.817 | 1e-166 | |
| 357460959 | 361 | Mannose-1-phosphate guanyltransferase [M | 1.0 | 0.916 | 0.817 | 1e-166 | |
| 218533669 | 361 | GDP-mannose pyrophosphorylase [Carica pa | 1.0 | 0.916 | 0.828 | 1e-166 |
| >gi|224087493|ref|XP_002308180.1| predicted protein [Populus trichocarpa] gi|222854156|gb|EEE91703.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 304/361 (84%), Positives = 319/361 (88%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKE+EK+LEIKITCSQETEPLGTAGPLALARDKLIDDSG PFFVLNSDVISEYPLKQ
Sbjct: 61 LNFLKEYEKRLEIKITCSQETEPLGTAGPLALARDKLIDDSGAPFFVLNSDVISEYPLKQ 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MIEFH+G GGEASIM VDEPSKYGVV+MEET+GKVEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKGHGGEASIMVTKVDEPSKYGVVLMEETSGKVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIEL+PTSIEKEVFP+IAAENKLFAMVLPGFWMDIGQPKDY+TGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAENKLFAMVLPGFWMDIGQPKDYVTGLRLYLDSLRKM 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SS KLATG NI+GNVLV E A IG+GCLIGPD K
Sbjct: 241 SSPKLATGPNIVGNVLVDESAVIGEGCLIGPDVAIGPGCIIDSGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVGRWAR+ENMTILGEDVHV+DEVYSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGRWARIENMTILGEDVHVSDEVYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224098483|ref|XP_002311190.1| predicted protein [Populus trichocarpa] gi|222851010|gb|EEE88557.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/361 (83%), Positives = 318/361 (88%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFE KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ
Sbjct: 61 LNFLKEFETKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MI+FH+ GGEASIM VDEPSKYGVVVMEE+TGKVE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIDFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVERFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSV+DRIEL+PTSIEKEVFP+IAA+NKL+AMVLPGFWMDIGQP+DYI GLRLYLD L+KN
Sbjct: 181 PSVIDRIELRPTSIEKEVFPKIAADNKLYAMVLPGFWMDIGQPRDYIVGLRLYLDSLKKN 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SSSKLATG +I+GNVLV E AKIG+GCLIGPD K
Sbjct: 241 SSSKLATGPHIVGNVLVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCSVMRGVYIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVGRWARVENMTILGEDV V DE+YSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGRWARVENMTILGEDVQVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218117841|dbj|BAH03298.1| GDP-D-mannose pyrophosphorylase [Prunus persica] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/361 (82%), Positives = 316/361 (87%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GV+EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVSEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ FLKEFE K+ IKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP KQ
Sbjct: 61 MTFLKEFETKVGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKQ 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MIEFH+ GGEASIM VDEPSKYGVVVMEE+TGKV+KFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVQKFVEKPKLFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIEL+PTSIEKEVFP IAAENKLFAMVLPGFWMDIGQP+DYITGLRLYLD L+KN
Sbjct: 181 PSVLDRIELRPTSIEKEVFPNIAAENKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKN 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SSSKLA GSN++GNVLV E AKIG+GCLIGPD K
Sbjct: 241 SSSKLARGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACIS SIIGWHSTVG+WARVENMTILGEDVHV+DE+YSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISGSIIGWHSTVGQWARVENMTILGEDVHVSDEIYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Prunus persica Species: Prunus persica Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|80973464|gb|ABB53473.1| GDP-mannose pyrophosphorylase [Malpighia glabra] gi|161898831|gb|ABX80393.1| GDP-mannose pyrophosphorylase [Malpighia glabra] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 296/361 (81%), Positives = 319/361 (88%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FEKKL+IKITCSQETEPLGTAGPLALARDKLID+SGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFEKKLDIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MIEFH+ GGEASIM VDEPSKYGVVVMEE+TG+VE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKNHGGEASIMVTKVDEPSKYGVVVMEESTGRVERFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIEL+PTSIEKEVFP+IAA+N L+AMVLPGFWMDIGQPKDYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAADNSLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKK 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SS+KLATGSN++GNVLV E AKIG+GCLIGPD K
Sbjct: 241 SSTKLATGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HAC+SSSIIGWHSTVG+WARVENMTILGEDVH+ DEVYSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACVSSSIIGWHSTVGQWARVENMTILGEDVHLCDEVYSNGGVVLPHKEIKSSIIKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Malpighia glabra Species: Malpighia glabra Genus: Malpighia Family: Malpighiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224831509|gb|ACN66754.1| GMP [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 300/361 (83%), Positives = 314/361 (86%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA GV+EV+LAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSMPKPLVDFANKPMILHQIEALKAAGVSEVILAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID+SGEPFFVLNSDVISEYPL +
Sbjct: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLTE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MI+FH GGEASIM VDEPSKYGVVV+EE T KVEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIKFHNSHGGEASIMVTKVDEPSKYGVVVIEEATRKVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRI+L+PTSIEKEVFPEIAAENKL+AMVLPGFWMDIGQPKDYITGLRLYLD L+K
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPEIAAENKLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKT 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SSSKLATGS+I+GNVLV E A I DGCLIGPD K
Sbjct: 241 SSSKLATGSHIVGNVLVDESAVIEDGCLIGPDVAIGPGCTIESGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVGRWARVENMTILGEDVHV DEVYSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGRWARVENMTILGEDVHVGDEVYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112691|ref|XP_002316262.1| predicted protein [Populus trichocarpa] gi|222865302|gb|EEF02433.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 298/361 (82%), Positives = 317/361 (87%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KLEIKITCSQETEPLGTAGPLALARDKLID SGEPFFVLNSDVISEYPLKQ
Sbjct: 61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQ 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MIEFH+ GGEASIM VDEPSKYGVVV EE+TGKVE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKVHGGEASIMVTKVDEPSKYGVVVTEESTGKVERFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIEL+PTSIEKEVFP+IAAE+KL+AMVLPGFWMDIGQP+DYITGLRLYLD L+KN
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAEDKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKN 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SSSKLA G +I+GNVLV E AKIG+GCLIGPD K
Sbjct: 241 SSSKLANGPHIVGNVLVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCSVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVG+WARVEN+TILGEDVHV DE+YSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENLTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441368|ref|XP_004138454.1| PREDICTED: mannose-1-phosphate guanylyltransferase 1-like [Cucumis sativus] gi|449476438|ref|XP_004154737.1| PREDICTED: mannose-1-phosphate guanylyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 300/361 (83%), Positives = 314/361 (86%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA+GV EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVEEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFEKKL IKITCSQETEPLGTAGPLALAR KLID SGEPFFVLNSDVISEYPLKQ
Sbjct: 61 LNFLKEFEKKLGIKITCSQETEPLGTAGPLALARGKLIDASGEPFFVLNSDVISEYPLKQ 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MIEFH+ GGEASIM VDEPSKYGVVVM+E+TGKVEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMDESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIEL+PTSIEKEVFP IAAE KL+AMVLPGFWMDIGQPKDYITGLRLYL+ L+KN
Sbjct: 181 PSVLDRIELRPTSIEKEVFPSIAAEQKLYAMVLPGFWMDIGQPKDYITGLRLYLNSLRKN 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SSS LA GS+I+GNVLV E AKIG+GCLIGPD K
Sbjct: 241 SSSVLAVGSHIVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVG+WARVENMTILGEDVHV DE+YSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVGDEIYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449380|ref|XP_002282422.1| PREDICTED: mannose-1-phosphate guanylyltransferase 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 295/361 (81%), Positives = 315/361 (87%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV+EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVSEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFE KL I ITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP K+
Sbjct: 61 LNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MIEFH+ GGEASIM VDEPSKYGVVVMEE+ G+V++FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESIGRVDRFVEKPKLFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRIEL+PTSIEKEVFP+IAAE KL+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SSSKLA+G++I+GNVLV E AKIG+GCLIGPD K
Sbjct: 241 SSSKLASGAHIVGNVLVDESAKIGEGCLIGPDVAIGPGCVVEAGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVG+WARVENMTILGEDVHV DE+YSNG VVLPHKEIKSSI+ PEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357460959|ref|XP_003600761.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula] gi|355489809|gb|AES71012.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 295/361 (81%), Positives = 318/361 (88%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALK +GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKDIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE+KL+IKITCSQETEPLGTAGPLALARDKLID SGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFEEKLDIKITCSQETEPLGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MI+FH+ GGEASIM VDEPSKYGVVVMEETTG+VEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIKFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLD IEL+PTSIEKEVFP+IAA KL+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDHIELRPTSIEKEVFPKIAANKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
+SSKLA+G +I+GNV+VHE AKIG+GCLIGPD K
Sbjct: 241 TSSKLASGPHILGNVIVHETAKIGEGCLIGPDVAIGPGCTIESGVRLSCCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHSTVG+WARVENMTILGEDVHV+DEVYSNG VVLPHKEIK+SI+NPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEIKTSILNPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218533669|gb|ACK87007.1| GDP-mannose pyrophosphorylase [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 299/361 (82%), Positives = 313/361 (86%), Gaps = 30/361 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA GV+EV+LAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSMPKPLVDFANKPMILHQIEALKAAGVSEVILAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID+SGEPFFVLNSDVISEYPL +
Sbjct: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLTE 120
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
MI+FH GGEASIM VDEPSKYGVVV+EE TGKVEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIKFHNSHGGEASIMVTKVDEPSKYGVVVIEEATGKVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLDRI+L+PTSIEKEVFPEIAAENKL+AMVLPGFWMDIGQPKDYITGLRLYLD L+K
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPEIAAENKLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKT 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------------------------K 270
SSSKLATGS+I+GNVLV E A I DGCLIGPD K
Sbjct: 241 SSSKLATGSHIVGNVLVDESAVIEDGCLIGPDVVIGPGCTIESGVRLSRCTVMRGVRIKK 300
Query: 271 HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
HACISSSIIGWHS VGRWARVENMTILGEDVHV DEVYSNG VVLPHKEIK SI+ PEIV
Sbjct: 301 HACISSSIIGWHSPVGRWARVENMTILGEDVHVGDEVYSNGGVVLPHKEIKFSILKPEIV 360
Query: 331 M 331
M
Sbjct: 361 M 361
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| TAIR|locus:2005504 | 361 | CYT1 "CYTOKINESIS DEFECTIVE 1" | 0.909 | 0.833 | 0.737 | 8.9e-143 | |
| TAIR|locus:2100001 | 364 | AT3G55590 [Arabidopsis thalian | 0.909 | 0.826 | 0.713 | 8.7e-111 | |
| UNIPROTKB|F1N7H5 | 360 | GMPPB "Mannose-1-phosphate gua | 0.809 | 0.744 | 0.591 | 2e-102 | |
| FB|FBgn0037279 | 369 | CG1129 [Drosophila melanogaste | 0.803 | 0.720 | 0.594 | 4.1e-102 | |
| MGI|MGI:2660880 | 360 | Gmppb "GDP-mannose pyrophospho | 0.809 | 0.744 | 0.584 | 8.4e-102 | |
| UNIPROTKB|Q295Y7 | 371 | GA10892 "Mannose-1-phosphate g | 0.803 | 0.716 | 0.590 | 8.4e-102 | |
| RGD|1560458 | 360 | Gmppb "GDP-mannose pyrophospho | 0.809 | 0.744 | 0.580 | 1.1e-101 | |
| UNIPROTKB|Q2YDJ9 | 360 | GMPPB "Mannose-1-phosphate gua | 0.809 | 0.744 | 0.588 | 2.2e-101 | |
| TAIR|locus:2118671 | 331 | AT4G30570 [Arabidopsis thalian | 0.752 | 0.752 | 0.747 | 9.7e-96 | |
| UNIPROTKB|F6X690 | 387 | GMPPB "Uncharacterized protein | 0.809 | 0.692 | 0.584 | 1.8e-95 |
| TAIR|locus:2005504 CYT1 "CYTOKINESIS DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 8.9e-143, Sum P(2) = 8.9e-143
Identities = 227/308 (73%), Positives = 250/308 (81%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LN TCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M+EFH+ GGEASIMV DEPSKYGVVVMEE+TG+VEKFVEKPK +VGNKINAGIYLLN
Sbjct: 121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVLD+IEL+PTSIEKE FP+IAA L+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKH---ACISSSIIGW-HSTVGRWARVEN 293
S +KL +G +I+GNVLV E A IG+GCLIGPD CI S + TV R R++
Sbjct: 241 SPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300
Query: 294 MTILGEDV 301
+ +
Sbjct: 301 HACISSSI 308
|
|
| TAIR|locus:2100001 AT3G55590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 222/311 (71%), Positives = 249/311 (80%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA+GV EVVLAINY+PE
Sbjct: 1 MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60
Query: 59 -VMLNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP 117
VM TCSQETEPLGTAGPLALARDKL+D SG+PFFVLNSDVIS+YP
Sbjct: 61 LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120
Query: 118 LKQMIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
L++MI FH GGEASIMV DEPSKYGVVVMEE TG+VE+FVEKPK FVGNKINAGIY
Sbjct: 121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180
Query: 175 LLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 234
LLNPSVLDRIEL+PTSIEKE+FP+IA KL+AM+LPGFWMDIGQP+DYITGLRLYLD L
Sbjct: 181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240
Query: 235 QKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKH---ACISSSIIGW-HSTVGRWAR 290
+K S SKLATG +I+GNVLV E A+IG+GCLIGP+ C+ S + H TV R
Sbjct: 241 RKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVH 300
Query: 291 VENMTILGEDV 301
V+ + +
Sbjct: 301 VKRYACISSSI 311
|
|
| UNIPROTKB|F1N7H5 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
Identities = 161/272 (59%), Positives = 207/272 (76%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG+V +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
+L +G I+GNVLV A+IG+ C IGP+
Sbjct: 240 HPEQLCSGPGIVGNVLVDPSARIGENCSIGPN 271
|
|
| FB|FBgn0037279 CG1129 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 161/271 (59%), Positives = 204/271 (75%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
+ALILVGG+GTRLRPLTLS PKPLV+FANKP++LHQ+EAL G +V+LA++Y+ E M
Sbjct: 12 RALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEALVDAGCRQVILAVSYRAEQME 71
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
S ETEPLGTAGPLALA+ ++ S EPFFVLNSDVI ++P KQ+
Sbjct: 72 KELKVEAKKLGVELIFSHETEPLGTAGPLALAKT-ILAASSEPFFVLNSDVICDFPFKQL 130
Query: 122 IEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
++FH G E +I+V +EPSKYGVV+ +E G ++ F+EKP+ FV NKINAGIY+ NP
Sbjct: 131 VQFHCNHGKEGTIVVTKVEEPSKYGVVLYDEN-GCIKNFIEKPQEFVSNKINAGIYIFNP 189
Query: 179 SVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKNS 238
SVLDRIE+KPTSIEKEVFPE+ + +L+AM L GFWMDIGQPKD++TG+ LYL L++
Sbjct: 190 SVLDRIEVKPTSIEKEVFPEMTQQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQ 249
Query: 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
S KL TG ++GNVLV AKIG+GC IGP+
Sbjct: 250 SPKLYTGPGVVGNVLVDPTAKIGEGCRIGPN 280
|
|
| MGI|MGI:2660880 Gmppb "GDP-mannose pyrophosphorylase B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 159/272 (58%), Positives = 205/272 (75%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
P+VL RI+LKPTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
+L +G I+GNVLV A+IG C IGP+
Sbjct: 240 HPERLYSGPGIVGNVLVDPSARIGQNCSIGPN 271
|
|
| UNIPROTKB|Q295Y7 GA10892 "Mannose-1-phosphate guanyltransferase beta" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 160/271 (59%), Positives = 204/271 (75%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
+ALILVGG+GTRLRPLTLS PKPLV+FANKP++LHQ+EAL G +V+LA++Y+ E M
Sbjct: 14 RALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEALVDAGCRQVILAVSYRAEQME 73
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
S ETEPLGTAGPLALA+ ++ S EPFFVLNSDVI ++P KQ+
Sbjct: 74 KELKVEADKLGVELIFSHETEPLGTAGPLALAKS-ILSASPEPFFVLNSDVICDFPFKQL 132
Query: 122 IEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
++FHR G E +I+V +EPSKYGVV+ +E G ++ F+EKP+ FV NKINAGIY+ NP
Sbjct: 133 VQFHRNHGKEGTIVVTKVEEPSKYGVVLYDED-GCIKNFIEKPQEFVSNKINAGIYIFNP 191
Query: 179 SVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKNS 238
SVL+RIE+KPTSIEKEVFP +A + +L+AM L GFWMDIGQPKD++TG+ LYL L++
Sbjct: 192 SVLERIEVKPTSIEKEVFPAMAEQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQ 251
Query: 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
S KL TG ++GNVLV A IG+GC IGP+
Sbjct: 252 SPKLYTGPGVVGNVLVDPTATIGEGCRIGPN 282
|
|
| RGD|1560458 Gmppb "GDP-mannose pyrophosphorylase B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 158/272 (58%), Positives = 205/272 (75%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
P+VL RI+LKPTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
+L +G ++GNVLV A+IG C IGP+
Sbjct: 240 HPERLYSGPGVVGNVLVDPSARIGQNCSIGPN 271
|
|
| UNIPROTKB|Q2YDJ9 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 2.2e-101, Sum P(2) = 2.2e-101
Identities = 160/272 (58%), Positives = 206/272 (75%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPL DF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLADFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG+V +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
PSVL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLKSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
+L +G I+GNVLV A+IG+ C IGP+
Sbjct: 240 HPEQLCSGPGIVGNVLVDPRARIGENCSIGPN 271
|
|
| TAIR|locus:2118671 AT4G30570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 189/253 (74%), Positives = 212/253 (83%)
Query: 21 VPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNXXXXXXXXXXXXXTCSQ 79
+PKPLVDF NKPMILHQIEALK GVTEVVLAIN+Q PEVMLN T SQ
Sbjct: 1 MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60
Query: 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMV--- 136
ETEPLGTAGPLALARDKL+D+SG+PFFVLNSDVI EYPL +MIEFH+ EASIMV
Sbjct: 61 ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120
Query: 137 DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVF 196
D+PSKYGVVV EE T +VE FVEKPK+FVGNKINAGIYLL+PSVLDRIEL+ TSIEKE+F
Sbjct: 121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180
Query: 197 PEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVLVHE 256
P+IA+E KL+AMVLPGFWMDIGQPKDYITG R+YL+ L++ + +LATG NIIGNVLVHE
Sbjct: 181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVLVHE 240
Query: 257 GAKIGDGCLIGPD 269
A IG+GCLIGPD
Sbjct: 241 SAVIGEGCLIGPD 253
|
|
| UNIPROTKB|F6X690 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 1.8e-95, Sum P(2) = 1.8e-95
Identities = 159/272 (58%), Positives = 206/272 (75%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
M++FHR G E SI+V +EPSKYGVVV E TG++ +FVEKP+ FV NKINAG+Y+LN
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILN 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 237
P+VL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PTVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
+L +G I+GNVLV A+IG C IGP+
Sbjct: 240 QPEQLCSGPGIVGNVLVDPSARIGQNCSIGPN 271
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A3QMC8 | GMPPB_CAEEL | 2, ., 7, ., 7, ., 1, 3 | 0.5177 | 0.9939 | 0.9013 | yes | no |
| Q68EY9 | GMPBA_XENLA | 2, ., 7, ., 7, ., 1, 3 | 0.5512 | 0.9969 | 0.9166 | N/A | no |
| O74484 | MPG1_SCHPO | 2, ., 7, ., 7, ., 1, 3 | 0.5604 | 0.9969 | 0.9090 | yes | no |
| Q4I1Y5 | MPG1_GIBZE | 2, ., 7, ., 7, ., 1, 3 | 0.5452 | 0.9969 | 0.9065 | yes | no |
| P0C5I2 | GMPPB_PIG | 2, ., 7, ., 7, ., 1, 3 | 0.5429 | 0.9969 | 0.9166 | yes | no |
| Q2UJU5 | MPG1_ASPOR | 2, ., 7, ., 7, ., 1, 3 | 0.5424 | 0.9969 | 0.9065 | yes | no |
| O74624 | MPG1_HYPJE | 2, ., 7, ., 7, ., 1, 3 | 0.5397 | 0.9969 | 0.9065 | N/A | no |
| O93827 | MPG1_CANAL | 2, ., 7, ., 7, ., 1, 3 | 0.5179 | 0.9969 | 0.9116 | N/A | no |
| Q8H1Q7 | GMPP3_ARATH | 2, ., 7, ., 7, ., 1, 3 | 0.7116 | 0.8882 | 0.8882 | no | no |
| Q9P8N0 | MPG1_PICAN | 2, ., 7, ., 7, ., 1, 3 | 0.5506 | 0.9969 | 0.9065 | N/A | no |
| Q9M2S0 | GMPP2_ARATH | 2, ., 7, ., 7, ., 1, 3 | 0.7307 | 1.0 | 0.9093 | no | no |
| Q68EQ1 | GMPPB_XENTR | 2, ., 7, ., 7, ., 1, 3 | 0.5484 | 0.9969 | 0.9166 | yes | no |
| Q5B1J4 | MPG1_EMENI | 2, ., 7, ., 7, ., 1, 3 | 0.5561 | 0.9969 | 0.9065 | yes | no |
| Q6BN12 | MPG1_DEBHA | 2, ., 7, ., 7, ., 1, 3 | 0.5179 | 0.9969 | 0.9116 | yes | no |
| Q8BTZ7 | GMPPB_MOUSE | 2, ., 7, ., 7, ., 1, 3 | 0.5484 | 0.9969 | 0.9166 | yes | no |
| Q54K39 | GMPPB_DICDI | 2, ., 7, ., 7, ., 1, 3 | 0.5789 | 0.9939 | 0.9164 | yes | no |
| Q7JZB4 | GMPPB_DROME | 2, ., 7, ., 7, ., 1, 3 | 0.5583 | 0.9909 | 0.8888 | yes | no |
| Q9Y5P6 | GMPPB_HUMAN | 2, ., 7, ., 7, ., 1, 3 | 0.5512 | 0.9969 | 0.9166 | yes | no |
| Q2YDJ9 | GMPPB_BOVIN | 2, ., 7, ., 7, ., 1, 3 | 0.5540 | 0.9969 | 0.9166 | yes | no |
| Q6DBU5 | GMPPB_DANRE | 2, ., 7, ., 7, ., 1, 3 | 0.5290 | 0.9969 | 0.9166 | yes | no |
| Q70SJ2 | MPG1_KLULA | 2, ., 7, ., 7, ., 1, 3 | 0.5441 | 0.9969 | 0.9141 | yes | no |
| Q61S97 | GMPPB_CAEBR | 2, ., 7, ., 7, ., 1, 3 | 0.5313 | 0.9909 | 0.9010 | N/A | no |
| Q6Z9A3 | GMPP3_ORYSJ | 2, ., 7, ., 7, ., 1, 3 | 0.7867 | 1.0 | 0.9168 | yes | no |
| Q9Y725 | MPG11_CANGA | 2, ., 7, ., 7, ., 1, 3 | 0.5248 | 0.9969 | 0.9141 | yes | no |
| Q7RVR8 | MPG1_NEUCR | 2, ., 7, ., 7, ., 1, 3 | 0.5424 | 0.9969 | 0.9065 | N/A | no |
| Q6CCU3 | MPG1_YARLI | 2, ., 7, ., 7, ., 1, 3 | 0.5357 | 0.9969 | 0.9090 | yes | no |
| P0CO20 | MPG1_CRYNJ | 2, ., 7, ., 7, ., 1, 3 | 0.5589 | 0.9969 | 0.9065 | yes | no |
| P0CO21 | MPG1_CRYNB | 2, ., 7, ., 7, ., 1, 3 | 0.5589 | 0.9969 | 0.9065 | N/A | no |
| Q4U3E8 | MPG1_ASPFU | 2, ., 7, ., 7, ., 1, 3 | 0.5479 | 0.9969 | 0.9065 | yes | no |
| P41940 | MPG1_YEAST | 2, ., 7, ., 7, ., 1, 3 | 0.5497 | 0.9969 | 0.9141 | yes | no |
| O22287 | GMPP1_ARATH | 2, ., 7, ., 7, ., 1, 3 | 0.7894 | 1.0 | 0.9168 | yes | no |
| Q84JH5 | GMPP1_ORYSJ | 2, ., 7, ., 7, ., 1, 3 | 0.7922 | 1.0 | 0.9168 | no | no |
| Q295Y7 | GMPPB_DROPS | 2, ., 7, ., 7, ., 1, 3 | 0.5527 | 0.9909 | 0.8840 | yes | no |
| Q941T9 | GMPP2_ORYSJ | 2, ., 7, ., 7, ., 1, 3 | 0.7867 | 1.0 | 0.9168 | yes | no |
| Q752H4 | MPG1_ASHGO | 2, ., 7, ., 7, ., 1, 3 | 0.5359 | 0.9969 | 0.9141 | yes | no |
| A2VD83 | GMPBB_XENLA | 2, ., 7, ., 7, ., 1, 3 | 0.5457 | 0.9969 | 0.9166 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.963 |
| 3rd Layer | 2.7.7.13 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 331 | |||
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-159 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 3e-93 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 1e-75 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 2e-63 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 6e-61 | |
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 1e-59 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 4e-51 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 2e-50 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 1e-48 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 1e-47 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 7e-43 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 4e-41 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 5e-31 | |
| TIGR02623 | 254 | TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti | 1e-28 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 8e-27 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 2e-26 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 3e-22 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 6e-22 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-21 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 5e-21 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 6e-21 | |
| COG1210 | 291 | COG1210, GalU, UDP-glucose pyrophosphorylase [Cell | 3e-19 | |
| COG1213 | 239 | COG1213, COG1213, Predicted sugar nucleotidyltrans | 1e-18 | |
| TIGR01099 | 260 | TIGR01099, galU, UTP-glucose-1-phosphate uridylylt | 3e-18 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 6e-18 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 3e-17 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 6e-17 | |
| COG4750 | 231 | COG4750, LicC, CTP:phosphocholine cytidylyltransfe | 4e-16 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 2e-14 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 5e-14 | |
| cd05824 | 80 | cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate | 6e-14 | |
| cd04197 | 217 | cd04197, eIF-2B_epsilon_N, The N-terminal domain o | 8e-14 | |
| PRK14357 | 448 | PRK14357, glmU, bifunctional N-acetylglucosamine-1 | 3e-12 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 2e-11 | |
| PRK10122 | 297 | PRK10122, PRK10122, GalU regulator GalF; Provision | 3e-11 | |
| PRK14359 | 430 | PRK14359, glmU, bifunctional N-acetylglucosamine-1 | 8e-11 | |
| PRK14353 | 446 | PRK14353, glmU, bifunctional N-acetylglucosamine-1 | 1e-10 | |
| TIGR01105 | 297 | TIGR01105, galF, UTP-glucose-1-phosphate uridylylt | 2e-10 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 1e-09 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 1e-08 | |
| cd04183 | 231 | cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv | 2e-08 | |
| PRK14356 | 456 | PRK14356, glmU, bifunctional N-acetylglucosamine-1 | 2e-08 | |
| cd02509 | 274 | cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guan | 4e-08 | |
| PRK14358 | 481 | PRK14358, glmU, bifunctional N-acetylglucosamine-1 | 5e-08 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 6e-08 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 7e-07 | |
| pfam12804 | 178 | pfam12804, NTP_transf_3, MobA-like NTP transferase | 8e-07 | |
| PRK13389 | 302 | PRK13389, PRK13389, UTP--glucose-1-phosphate uridy | 2e-06 | |
| PRK14352 | 482 | PRK14352, glmU, bifunctional N-acetylglucosamine-1 | 2e-06 | |
| PRK09451 | 456 | PRK09451, glmU, bifunctional N-acetylglucosamine-1 | 3e-06 | |
| PRK14360 | 450 | PRK14360, glmU, bifunctional N-acetylglucosamine-1 | 5e-06 | |
| cd02516 | 218 | cd02516, CDP-ME_synthetase, CDP-ME synthetase is i | 2e-05 | |
| COG2266 | 177 | COG2266, COG2266, GTP:adenosylcobinamide-phosphate | 3e-05 | |
| cd04182 | 186 | cd04182, GT_2_like_f, GT_2_like_f is a subfamily o | 3e-05 | |
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 3e-05 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 6e-05 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 1e-04 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 2e-04 | |
| COG1211 | 230 | COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith | 2e-04 | |
| TIGR00453 | 217 | TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha | 3e-04 | |
| COG0836 | 333 | COG0836, {ManC}, Mannose-1-phosphate guanylyltrans | 3e-04 | |
| cd02503 | 181 | cd02503, MobA, MobA catalyzes the formation of mol | 3e-04 | |
| PRK00317 | 193 | PRK00317, mobA, molybdopterin-guanine dinucleotide | 4e-04 | |
| COG0746 | 192 | COG0746, MobA, Molybdopterin-guanine dinucleotide | 5e-04 | |
| PRK00155 | 227 | PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat | 5e-04 | |
| PRK05450 | 245 | PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt | 7e-04 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 9e-04 | |
| cd05636 | 163 | cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho | 0.001 | |
| cd02517 | 239 | cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca | 0.001 | |
| PRK13368 | 238 | PRK13368, PRK13368, 3-deoxy-manno-octulosonate cyt | 0.001 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 0.002 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 0.002 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 0.002 | |
| PRK14489 | 366 | PRK14489, PRK14489, putative bifunctional molybdop | 0.002 | |
| TIGR02665 | 186 | TIGR02665, molyb_mobA, molybdopterin-guanine dinuc | 0.004 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 443 bits (1142), Expect = e-159
Identities = 166/234 (70%), Positives = 201/234 (85%), Gaps = 4/234 (1%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTL+VPKPLV+F NKPMI HQIEAL GV E++LA+NY+PE M
Sbjct: 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ FLKE+EKKL IKIT S ETEPLGTAGPLALARD L DD EPFFVLNSDVI ++PL +
Sbjct: 61 VPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAE 119
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
+++FH+ G E +I+ V++PSKYGVVV +E TG++E+FVEKPK FVGNKINAGIY+LN
Sbjct: 120 LLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILN 179
Query: 178 PSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231
PSVLDRI L+PTSIEKE+FP++A+E +L+A LPGFWMDIGQPKD++ G+ LYL
Sbjct: 180 PSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 3e-93
Identities = 128/352 (36%), Positives = 185/352 (52%), Gaps = 39/352 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL GG+GTRLRPLT PKPL+ A KP+I + +EAL A GV E+VL + Y E +
Sbjct: 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQI 61
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ + + L ++IT E EPLGTAG L A D L D F VLN DV+++ L +
Sbjct: 62 EEYFGD-GEGLGVRITYVVEKEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSE 117
Query: 121 MIEFHRGRGGEASI---MVDEPSKYGVVVMEETTGKVEKFVEKPKNFVG--NKINAGIYL 175
++EFH+ +G A+I V +PS++GVV ++ G+V +F EKP N INAGIY+
Sbjct: 118 LLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYI 177
Query: 176 LNPSVLDRIEL-KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDF 233
+P V D IE + E+E+ P +AA+ ++ V G+W+DIG P+D + L L
Sbjct: 178 FDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237
Query: 234 LQ------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDK----------HACISSS 277
+ + IIG V++ GAKIG G LIGP I +S
Sbjct: 238 DGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNS 297
Query: 278 IIGWHSTVGRWARVENMTILGE-----------DVHVADEVYSNGAVVLPHK 318
II + +G + + + +I+GE DV + VV+
Sbjct: 298 IIMDNVVIGHGSYIGD-SIIGENCKIGASLIIGDVVIGINSEILPGVVVGPG 348
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 1e-75
Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTRLRPLT + PKPL+ A KP++ + IE L G+ E++L + Y E +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
+ + K + I + EPLGTAG + A D L DD F V+N DV+++ L +++
Sbjct: 61 YFGD-GSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELL 116
Query: 123 EFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPS 179
FHR +G +A+I V++PS+YGVV +++ G+V +FVEKP N NAGIY+ P
Sbjct: 117 RFHREKGADATIAVKEVEDPSRYGVVELDD-DGRVTRFVEKPTLPESNLANAGIYIFEPE 175
Query: 180 VLDRIELKPTS---IEKEVFPEIAAENKLFAMVLPGFWMDIG 218
+LD I + P + E K++ + G+W+DIG
Sbjct: 176 ILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-63
Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 17/247 (6%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVM 60
KA+IL GG GTRL PLT ++ KPLV +K PMI + + L G+ E ++ + +
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ K +++T + + EP GTA +ALA D L DD E VL D I ++
Sbjct: 61 VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120
Query: 121 MIEFHR--GRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVG-NKINAGIY 174
++ R G + V++P+ YGV+ +E G+V +FVEKP N + GIY
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDE-NGRVIRFVEKPDLPKASNYASMGIY 179
Query: 175 LLNPSVLDRI--ELKP-----TSIEKEVFPEIAAENKLFAMVLPGF--WMDIGQPKDYIT 225
N V + LK I + + + A + G+ W D+G
Sbjct: 180 FFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWE 239
Query: 226 GLRLYLD 232
L
Sbjct: 240 ANLKLLT 246
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 6e-61
Identities = 115/337 (34%), Positives = 170/337 (50%), Gaps = 45/337 (13%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL G GTR+RPLT + PKP++ A KP++ H IEAL+ G+ + V + Y E +
Sbjct: 1 MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LK 119
+ + + + I + E LGTA L A++ +DD F VLN DV+ + L+
Sbjct: 61 REYFGD-GSRGGVPIEYVVQEEQLGTADALGSAKE-YVDD---EFLVLNGDVLLDSDLLE 115
Query: 120 QMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLL 176
++I R +I VD+PS YGVV + G+V VEKP+N N INAGIYL
Sbjct: 116 RLI-----RAEAPAIAVVEVDDPSDYGVVETDG--GRVTGIVEKPENPPSNLINAGIYLF 168
Query: 177 NPSVLDRIELKPTSIEKEVFPEI-------AAENKLFAMVLPGFWMDIGQPKDYITGLRL 229
+P + + +E S E E+ E K+ A+ L GFW+D+G+P D +
Sbjct: 169 SPEIFELLEKTKLSPRGEY--ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEA 226
Query: 230 YLDFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLI-GPDKHACISSSIIGWHSTVGRW 288
LD L+ + I G V++ EGA I G I GP IG + +G
Sbjct: 227 LLDNLEPRIEGTVEENVTIKGPVVIGEGAVIRSGTYIEGP--------VYIGKNCDIGPN 278
Query: 289 ARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325
A + T++G +VH+ + V EIK+SI+
Sbjct: 279 AYIRPYTVIGNNVHIGNAV-----------EIKNSII 304
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 1e-59
Identities = 94/257 (36%), Positives = 138/257 (53%), Gaps = 29/257 (11%)
Query: 3 ALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEV 59
A+ILVGG GTR RPL+L VPKPL A KPMI H IEA V + EV+L Y V
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60
Query: 60 MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLK 119
+F+ + +++ + I QE +PLGTAG L RD+++ + FFVLN+DV ++PL+
Sbjct: 61 FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120
Query: 120 QMIEFHRGRGGEASIMVDEPSK-----YGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
+++EFH+ G +I+ E S+ YG +V + +TG+V +VEKP+ FV + IN G+Y
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180
Query: 175 LLNPSVLDRIEL---------------------KPTSIEKEVFPEIAAENKLFAMVLPGF 213
L +P + D I+ + +E++V +A KL+ F
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF 240
Query: 214 WMDIGQPKDYITGLRLY 230
W I I RLY
Sbjct: 241 WSQIKTAGSAIYANRLY 257
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-51
Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 8/224 (3%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL GG GTRLR + +PKPL A +P + + +E L G++ +VL++ Y E +
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
+ + + I+I E EPLGT G + A KL +D F VLN D + L ++
Sbjct: 61 YFGD-GYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQ---FLVLNGDTYFDVDLLALL 116
Query: 123 EFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPS 179
R G +A++ V + S+YG V ++ G+V FVEK IN G+YLL
Sbjct: 117 AALRASGADATMALRRVPDASRYGNVTVDG-DGRVIAFVEKGPGAAPGLINGGVYLLRKE 175
Query: 180 VLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDY 223
+L I S+E +V P + +L+ + G+++DIG P+DY
Sbjct: 176 ILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDY 219
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-50
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 16/228 (7%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+IL G GTR+RPLT + PKPLV A KP+I H ++ L A G+ +V+ ++ + +
Sbjct: 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIE 60
Query: 62 NFLKEFEKKLEIKITCSQE-TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + L I I S E E L T G + A L EPF V+N D++ + L
Sbjct: 61 AHLGDSRFGLRITI--SDEPDELLETGGGIKKALPLL---GDEPFLVVNGDILWDGDLAP 115
Query: 121 MIEFHRGRGGEAS---IMVDEPSK--YGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYL 175
++ H R +V P G ++ G++ + V GI +
Sbjct: 116 LLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDA-DGRLRR---GGGGAVAPFTFTGIQI 171
Query: 176 LNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDY 223
L+P + I S+ ++ A +LF +V G W D+G P+
Sbjct: 172 LSPELFAGIPPGKFSL-NPLWDRAIAAGRLFGLVYDGLWFDVGTPERL 218
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 1e-48
Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 27/232 (11%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
+I+ GG GTRLRPLT + PKP++ KP++ I+ A G +++NY E++ +
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIED 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
+ + K + I+ +E +PLGTAG L+L +K +PF V+N D+++ + ++
Sbjct: 61 YFGD-GSKFGVNISYVREDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLL 115
Query: 123 EFHRGRGGEASIMVDE-----PSKYGVVVMEETTGKVEKFVEKPK-NFVGNKINAGIYLL 176
+FH+ +A++ V E P YGVV E G++ EKP +F +NAGIY+L
Sbjct: 116 DFHKENNADATVCVREYEVQVP--YGVVETEG--GRITSIEEKPTHSF---LVNAGIYVL 168
Query: 177 NPSVLDRIELK-----PTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDY 223
P VLD I P IEK I K+ + +W+DIG+P+DY
Sbjct: 169 EPEVLDLIPKNEFFDMPDLIEK----LIKEGKKVGVFPIHEYWLDIGRPEDY 216
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-47
Identities = 80/242 (33%), Positives = 127/242 (52%), Gaps = 17/242 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK LIL GG GTRLRPLT + PK L+ A KP+I + IE L+ G+ ++ + + E +
Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + + ++IT + EPLG A + ARD L EPF V D + + +
Sbjct: 61 KEALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFL---GDEPFVVYLGDNLIQEGISP 116
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++ +ASI+ V++P ++GV V+++ G++ + VEKPK N G+Y
Sbjct: 117 LVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFT 174
Query: 178 PSVLDRI-ELKPTSI-EKEVFPE-----IAAENKLFAMVLPGFWMDIGQPKDYITGLRLY 230
P++ D I LKP+ E E+ + I ++ ++ G+W D G P+D + RL
Sbjct: 175 PAIFDAISRLKPSWRGELEI-TDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLL 233
Query: 231 LD 232
LD
Sbjct: 234 LD 235
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 7e-43
Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 25/341 (7%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVM 60
KALIL G GTRLRPLT + PK L+ ANKP++ + IE L G+T++ + + E +
Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ E E + KIT + EPLG A + ARD L DD F V D + + + +
Sbjct: 61 KEIVGEGE-RFGAKITYIVQGEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISR 116
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++ + +A I+ V +P+ +GV V+E+ ++ K VEKPK N G+Y+
Sbjct: 117 FVKSFEEKDYDALILLTKVRDPTAFGVAVLED-GKRILKLVEKPKEPPSNLAVVGLYMFR 175
Query: 178 PSVLDRIE-LKPT-----SIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231
P + + I+ +KP+ I + I K+ + G+W D G+P+D + RL L
Sbjct: 176 PLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL 235
Query: 232 DFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGP---DKHACISSSIIGWHSTVGRW 288
D +++ + S I G V+V EGAKI + + GP + I +S IG ++++G
Sbjct: 236 DEVEREVQG-VDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEG 294
Query: 289 ARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEI 329
+ + + E V DE + I S++ ++
Sbjct: 295 VVIRDAEV--EHSIVLDES----VIEGVQARIVDSVIGKKV 329
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-41
Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 31/281 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRLRPLT VPK L+ +KPMI + +E L G+ ++++ + + +
Sbjct: 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + IT + + EP G A + +A D + D + F + D I + L +
Sbjct: 61 FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAED-FVGD--DDFVLYLGDNIFQDGLSE 117
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++E G A+I+ VD+PS+YGVV +E GKV EKPK N G+Y +
Sbjct: 118 LLEHFAEEGSGATILLYEVDDPSRYGVVEFDE-DGKVIGLEEKPKEPKSNLAVTGLYFYD 176
Query: 178 PSVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGFWMDIGQPKDYITGLR 228
PSV + I+ +KP S E+ EI L+ A+++ G+W+D G P+ L
Sbjct: 177 PSVFEAIKQIKP-SARGEL--EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESL---LE 230
Query: 229 LYLDFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
++ + T S G + +G + GP
Sbjct: 231 A---------NNFVRTVSKRQGFKIACPEEIAWNGWIDGPG 262
|
Length = 286 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 5e-31
Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 35/241 (14%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
+IL GG GTRL T PKP+V+ +P++ H ++ G + +L + Y+ V
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHV--- 57
Query: 63 FLKEF----------------EKKLEI--------KITCSQETEPLGTAGPLALARDKLI 98
+KE+ ++E+ K+T T G L R L
Sbjct: 58 -IKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG 116
Query: 99 DDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157
DD E F + D +S+ + +IEFHR G A++ V P ++G + +++ G+V F
Sbjct: 117 DD--ETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVHPPGRFGELDLDDD-GQVTSF 173
Query: 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFW--M 215
EKP+ G IN G ++L P V D I+ T E+E +A + +L A GFW M
Sbjct: 174 TEKPQG-DGGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCM 232
Query: 216 D 216
D
Sbjct: 233 D 233
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 1e-28
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 29/249 (11%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+IL GG GTR+ T PKP+V+ KP++ H ++ G+ + ++ Y+ V+
Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIK 60
Query: 62 NFLKEF-------------------EKKLE-IKITCSQETEPLGTAGPLALARDKLIDDS 101
+ + K++E ++T E T G L R+ L D
Sbjct: 61 EYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDD-- 118
Query: 102 GEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKFVEK 160
E F D +++ +K +I FHR G +A++ V P ++G + +E +V F EK
Sbjct: 119 -EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQPPGRFGALDLEG--EQVTSFQEK 175
Query: 161 PKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFW--MDIG 218
P G IN G ++LNPSVLD I+ T E+E +A +L A GFW MD
Sbjct: 176 PLG-DGGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTL 234
Query: 219 QPKDYITGL 227
+ K+Y+ L
Sbjct: 235 RDKNYLEEL 243
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-27
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 26/236 (11%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G G+RLRPLT PK L++ KP++ QIE LK G+ ++V+ Y+ E +
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQM 121
LK K IK + + L LARD L E F +L DV+ L+++
Sbjct: 61 LLK---KYPNIKFVYNPDYAETNNIYSLYLARDFL----DEDFLLLEGDVVFDPSILERL 113
Query: 122 IEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEK-PKNFVGNKINA---GIYLLN 177
+ + +I+VD+ +K + + K +I GI +
Sbjct: 114 LSS----PADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKNLEEIQGEYVGISKFS 169
Query: 178 PSVLDRI-----ELKPTSIEK----EVFPEIAAENKLFAMVLP-GFWMDIGQPKDY 223
P DR+ EL + + +E + + GFW +I +D
Sbjct: 170 PEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISDGFWYEIDDLEDL 225
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-26
Identities = 79/265 (29%), Positives = 119/265 (44%), Gaps = 48/265 (18%)
Query: 1 MKALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------ 51
KA+I G GTR P T ++PK P+VD KP+I + +E A G+ ++++
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVD---KPVIQYIVEEAVAAGIEDIIIVTGRGK 57
Query: 52 -AI------NYQPEVMLNF-----LKEFEKKLEIKITCS--QETEPLGTAGPLALARDKL 97
AI +Y+ E L L E + + ++ EPLG + A+
Sbjct: 58 RAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKP-F 116
Query: 98 IDDSGEPFFVLNSDVI--SEYP-LKQMIEFHRGRGGEASIMV-----DEPSKYGVVVMEE 149
I D EPF VL D + S+ P LKQ+IE + + G + I V ++ SKYG+V E+
Sbjct: 117 IGD--EPFAVLLGDDLIDSKEPCLKQLIEAYE-KTGASVIAVEEVPPEDVSKYGIVKGEK 173
Query: 150 TTG---KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPTSIEKEV-----FPEI 199
G KV+ VEKPK N G Y+L P + D +E E+ ++
Sbjct: 174 IDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKL 233
Query: 200 AAENKLFAMVLPGFWMDIGQPKDYI 224
E ++A V G D G Y+
Sbjct: 234 LEEEPVYAYVFEGKRYDCGNKLGYL 258
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 90/364 (24%), Positives = 150/364 (41%), Gaps = 80/364 (21%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ A+IL G GTR++ +PK L A KPM+ H I+A +A+G ++V+ + + E +
Sbjct: 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQV 59
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L E + + + E LGT + A L DD VL DV I+ L
Sbjct: 60 REALAERD-----DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETL 114
Query: 119 KQMIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVE------KPKNFVGNKI 169
++++ H G A+++ D+P+ YG +V + G+V VE + K +I
Sbjct: 115 EELLAAHPAHGAAATVLTAELDDPTGYGRIVRDG-NGEVTAIVEEKDASEEEKQI--KEI 171
Query: 170 NAGIYLLNPSVLDR--IELKPTSIEKEVF----PEIAAENKLFAMVLPGFWMDIGQPKDY 223
N GIY + + L R +L + + E + IA + D
Sbjct: 172 NTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAV--------HVDDE 223
Query: 224 --ITGL--RLYL----DFLQKNSSSKLA-TGSNII--------------GNVLVHEGA-- 258
+ G+ R+ L +Q+ + KL G +I +V++
Sbjct: 224 EEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVIL 283
Query: 259 ----KIGDGCLIGPDK---------------HACISSSIIGWHSTVGRWARVENMTILGE 299
IGD +IGP ++ I S +G +TVG +AR+ +LG
Sbjct: 284 EGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGA 343
Query: 300 DVHV 303
DVH+
Sbjct: 344 DVHI 347
|
Length = 460 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 6e-22
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 25/240 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRL PLT V K L+ +KPMI + + L G+ E+++ PE +
Sbjct: 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIIST--PEDL 58
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE-YP 117
F + L I+IT + + +P G A + + + DD P ++ D I
Sbjct: 59 PLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQG 115
Query: 118 LKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
L +++ + A++ V++P +YGVV +E G+V EKPK N G+Y
Sbjct: 116 LSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDE-NGRVLSIEEKPKKPKSNYAVTGLY 174
Query: 175 LLNPSVLDRIE-LKPTSIEKEVFPEIA-------AENKLFAMVLP--GFWMDIGQPKDYI 224
+ V + + LKP S E+ EI + KL +L W+D G + +
Sbjct: 175 FYDNDVFEIAKQLKP-SARGEL--EITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLL 231
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-21
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 43/220 (19%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEV-VLAINYQPEV 59
+A++L GFG+R PLT +PK L+ AN P+I + +E L+ GV EV V+ + +
Sbjct: 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 60 MLNFLKEF----EKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE 115
+ + LK K+ + + S E G A L R + D F +L+ D++S
Sbjct: 61 IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSD----FLLLSCDLVSN 116
Query: 116 YPLKQMIEFHRG--RGGEASIMV--------DEPSKYG----VVVMEETTGKV-----EK 156
PL +++E R + A++ V E SK V+ ++ T ++ E+
Sbjct: 117 IPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEE 176
Query: 157 FVEKPKNFVGNK---------------INAGIYLLNPSVL 181
+++ + K ++ IY+ +P VL
Sbjct: 177 DLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 5e-21
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L A KPM+ H ++A +A+G +V+ + + E +
Sbjct: 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKK 57
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
L + + E LGT + A L D G+ VL DV I+ L++
Sbjct: 58 ALANP------NVEFVLQEEQLGTGHAVKQALPALKDFEGD-VLVLYGDVPLITPETLQR 110
Query: 121 MIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVE---------KPKNFVGNK 168
++E HR G + +++ ++P+ YG ++ + GKV + VE + +
Sbjct: 111 LLEAHREAGADVTVLTAELEDPTGYGRIIRDG-NGKVLRIVEEKDATEEEKAIR-----E 164
Query: 169 INAGIYLLNPSVLDR 183
+NAGIY + L
Sbjct: 165 VNAGIYAFDAEFLFE 179
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 71/357 (19%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ +IL G GTR++ +PK L A KPM+ H I+A +A+G ++ + + E +
Sbjct: 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + E LGT + A L DD VL DV IS L
Sbjct: 58 RKALA------NRDVNWVLQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETL 109
Query: 119 KQMIEFHRGRG-GEASIMVDEPSKYGVVVMEETTGKVEKFVEK----PKNFVGNKINAGI 173
++++E HR G + + +P+ YG ++ E GKV VE + +IN G+
Sbjct: 110 ERLLEAHRQNGITLLTAKLPDPTGYGRIIREN-DGKVTAIVEDKDANAEQKAIKEINTGV 168
Query: 174 YLLNPSVLDRI--ELKPTSIEKEVF-PEIAAENKLFAMVLPGFWMDIGQPKDY--ITGL- 227
Y+ + + L R +L + + E + ++ A V G + Q D + G+
Sbjct: 169 YVFDGAALKRWLPKLSNNNAQGEYYLTDVIA-----LAVADGETVRAVQVDDSDEVLGVN 223
Query: 228 -RLYL----DFLQKNSSSKLA---------------------------TGSNIIGNVLVH 255
RL L LQ+ + KL + G V +
Sbjct: 224 DRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIG 283
Query: 256 EGAKIGDGCLI-----GPD----KHACISSSIIGWHSTVGRWARVENMTILGEDVHV 303
+ IG GC+I G + ++ + S IG VG +AR+ ++LG VH+
Sbjct: 284 DDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHI 340
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 3e-19
Identities = 82/269 (30%), Positives = 121/269 (44%), Gaps = 55/269 (20%)
Query: 1 MKALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------ 51
KA+I G GTR P T ++PK P+VD KP+I + +E A G+ E+++
Sbjct: 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVD---KPLIQYIVEEAVAAGIEEILIVTGRGK 61
Query: 52 -AI----NYQPEVMLNFLKEFEKKLEIK--------ITCSQ--ETEPLGTAGPLALARDK 96
AI + E + N L++ K+ ++ +T S + EPLG + A+
Sbjct: 62 RAIEDHFDTSYE-LENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKP- 119
Query: 97 LIDDSGEPFFVLNSDVI--SEYP-LKQMIEFHRGRGGEASIMV-----DEPSKYGVV--- 145
+ D EPF VL D + SE P LKQMIE + GG I V ++ SKYGV+
Sbjct: 120 FVGD--EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPG 176
Query: 146 -VMEETTGKVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIELKPTSIEKEV----- 195
+E+ KV+ VEKPK N G Y+L P + D +E E+
Sbjct: 177 EPVEKGVYKVKGMVEKPK--PEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDA 234
Query: 196 FPEIAAENKLFAMVLPGFWMDIGQPKDYI 224
++ + + A V G D G YI
Sbjct: 235 IKKLLKKEPVLAYVFEGKRYDCGSKLGYI 263
|
Length = 291 |
| >gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-18
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 27/251 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTE-VVLAINYQPEV 59
MKA+IL GFG+RL P +PK LV+ + +I IE L G+TE VV+ Y+ ++
Sbjct: 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60
Query: 60 MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLK 119
+ FLK++ KI + + E T L LA+D + F ++ SD + Y
Sbjct: 61 VEEFLKKY--PFNAKIVINSDYEKTNTGYSLLLAKDYMDGR----FILVMSDHV--YEPS 112
Query: 120 QMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVE--KFVEKPKNFVGNKINA---GIY 174
+ GE I+ P V V E T K E + VE K+ + + GI+
Sbjct: 113 ILERLLEA-PGEGLIVDRRPRY--VGVEEATKVKDEGGRIVEIGKDL--TEYDGEDIGIF 167
Query: 175 LLNPSVLDRIE----LKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYITGLRL 229
+L+ S+ + + +EV E + + G FWM++ P+D +
Sbjct: 168 ILSDSIFEDTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKY 227
Query: 230 YLDFLQKNSSS 240
+ ++K
Sbjct: 228 LVPNIKKGVGD 238
|
Length = 239 |
| >gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-18
Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 42/263 (15%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVL-------AI 53
KA+I G GTR P T ++PK ++ +KP+I + +E G+ ++++ +I
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60
Query: 54 ------NYQPEVML------NFLKEFEKKLE-IKITCSQETEPLGTAGPLALARDKLIDD 100
+Y+ E L LKE + I ++ E G + A + D
Sbjct: 61 EDHFDTSYELEHQLEKTNKEELLKEVRSIIPLATIFYVRQKEQKGLGHAVLCAE-PFVGD 119
Query: 101 SGEPFFVLNSDVI--SEYP-LKQMIEFHRGRGGEASIMV-----DEPSKYGVV---VMEE 149
EPF V+ D I SE P LKQMI+ + + G + I V +E SKYGV+ +EE
Sbjct: 120 --EPFAVILGDDICVSEEPVLKQMIDLYE-KYGCSIIAVEEVPKEEVSKYGVIDGEGVEE 176
Query: 150 TTGKVEKFVEKPKNFVG--NKINAGIYLLNPSVLDRIELKPTSIEKEV-----FPEIAAE 202
+++ VEKPK N G Y+L P + + +E P E+ ++ +
Sbjct: 177 GVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELLEETPPGKGGEIQLTDALRKLLKK 236
Query: 203 NKLFAMVLPGFWMDIGQPKDYIT 225
+++A G D G YI
Sbjct: 237 ERVYAYKFKGKRYDCGSKLGYIK 259
|
Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 6e-18
Identities = 79/351 (22%), Positives = 143/351 (40%), Gaps = 65/351 (18%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQP---- 57
A+IL GG G+RL PLT KP V F K +I + G+ + + Y+
Sbjct: 8 AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLN 67
Query: 58 -------EVMLNFLKEFEKKLEIKITCSQETEPL---GTAGPLALARD-KLIDDSGEPFF 106
L+ + I +E GTA A+ ++ +I S +
Sbjct: 68 DHIGRGWPWDLDRKNGG---VFILPAQQREGGERWYEGTA--DAIYQNLLIIRRSDPEYV 122
Query: 107 V-LNSDVISEYPLKQMIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVEK 160
+ L+ D I + M++FH G + ++ V +E S++GV+ ++E G++ +FVEK
Sbjct: 123 LILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN-GRIIEFVEK 181
Query: 161 PKN--FVGNKINAGIYLLNPSVLDRIEL------KPTS---IEKEVFPEIAAENKLFAMV 209
P + + + GIY+ N +L EL P S K++ P++ K++A
Sbjct: 182 PADGPPSNSLASMGIYIFNTDLL--KELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYE 239
Query: 210 LPGFWMDIGQPKDYITGLRLYLDFLQK-------NSSSKLATGSNI-----IGNVLVHEG 257
G+W D+G Y +D L + + + T + N
Sbjct: 240 FSGYWRDVGTIDSY---YEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296
Query: 258 AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTIL-----GEDVHV 303
+ + GC+I + +S++ +G+ + +EN I+ GE +
Sbjct: 297 SLVAGGCII----SGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVL 343
|
Length = 393 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-17
Identities = 77/356 (21%), Positives = 144/356 (40%), Gaps = 53/356 (14%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMIL-----HQIEALKAVGVTEVVLAINYQP 57
A++L GG G+RL PLT KP V F K I+ + I + G+ + + Y+
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS----GIRRIGVLTQYKS 56
Query: 58 EV----------MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107
F+ F L + S GTA + D + D E +
Sbjct: 57 HSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLI 116
Query: 108 LNSDVISEYPLKQMIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVEKPK 162
L+ D I + ++M+++H G + +I E S++GV+ ++E G++ F EKP
Sbjct: 117 LSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDED-GRIVDFEEKPA 175
Query: 163 NFVGNKINA-------GIYLLNPSVL-----DRIELKPTSIE--KEVFPEIAAENKLFAM 208
N GIY+ + VL + + +S + K++ P E + A
Sbjct: 176 NPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAY 235
Query: 209 VLPGFWMDIGQPKDY------ITGLRLYLDFLQKN----SSSKLATGSNIIGNVLVHEGA 258
+ G+W D+G + + + D + + ++ + + + +
Sbjct: 236 LFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDS 295
Query: 259 KIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVV 314
+ +GC+I A +S S++G +G + VE+ I+G DV + A++
Sbjct: 296 LVSEGCII---SGATVSHSVLGIRVRIGSGSTVEDSVIMG-DVGIGRGAVIRNAII 347
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-17
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTE--VVLAINYQPE 58
+A+IL GG G+RL PLT ++PK L+ ANKPMI + ++ L+ G + VV+ Q E
Sbjct: 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAE 60
Query: 59 VML---NFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE 115
+ +F ++KL+ E +GTA L R K+ D F VL+ D+I++
Sbjct: 61 ISTYLRSFPLNLKQKLDEVTIVLD--EDMGTADSLRHIRKKIKKD----FLVLSCDLITD 114
Query: 116 YPLKQMIEFHR 126
PL ++++ HR
Sbjct: 115 LPLIELVDLHR 125
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-16
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M A+IL G G+R PLT S PK L+ +P+I QIE L+ G+ ++ + + Y E
Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKE-Q 59
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112
+LK+ K ++ + + + L LARD L + ++++SD
Sbjct: 60 FEYLKD---KYDVTLVYNPKYREYNNIYSLYLARDFLNNT-----YIIDSDN 103
|
Length = 231 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L KPM+ H ++++K G+ ++V + + E
Sbjct: 5 AIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAE---- 57
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
E ++ L + + + E LGT + A + L D G V+ D I+ LK
Sbjct: 58 ---EVKEVLGDRSEFALQEEQLGTGHAVMQAEEFLADKEGT-TLVICGDTPLITAETLKN 113
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE----KPKNFVGNKINAGI 173
+I+FH A+I+ + P+ YG ++ E G+VEK VE + +IN G
Sbjct: 114 LIDFHEEHKAAATILTAIAENPTGYGRIIRNE-NGEVEKIVEQKDATEEEKQIKEINTGT 172
Query: 174 Y 174
Y
Sbjct: 173 Y 173
|
Length = 458 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 5e-14
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ + V PL A +PM+ + A + G +VL + +Q E +
Sbjct: 6 AIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVRE 62
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ ++ + + E LGT +A A L SG +L DV + L+
Sbjct: 63 HFAG-----DGDVSFALQEEQLGTGHAVACAAPALDGFSGT-VLILCGDVPLLRAETLQG 116
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEK----PKNFVGNKINAGI 173
M+ HR G +++ ++ P YG +V + G+V + VE+ P+ ++N+GI
Sbjct: 117 MLAAHRATGAAVTVLTARLENPFGYGRIVRDA-DGRVLRIVEEKDATPEERSIREVNSGI 175
Query: 174 Y 174
Y
Sbjct: 176 Y 176
|
Length = 459 |
| >gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-14
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 9/76 (11%)
Query: 239 SSKLATGSNIIGNVLVHEGAKIGDG-----CLIGPDK----HACISSSIIGWHSTVGRWA 289
S+K+ + I NV++ IGDG C+I + H+ + SSI+GW+STVGRW
Sbjct: 5 SAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWT 64
Query: 290 RVENMTILGEDVHVAD 305
R+EN+T+LG+DV + D
Sbjct: 65 RLENVTVLGDDVTIKD 80
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80 |
| >gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-14
Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 54/224 (24%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEV-VLAINYQPEVML 61
A++L F R RPLT P+ L+ AN P+I + +E L GV EV V ++ ++
Sbjct: 3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIK- 61
Query: 62 NFLKEFEK------KLEIKITCSQETEPLGTAGPLALARD----KLIDDSGEPFFVLNSD 111
++++ + + + I S++ LG A RD LI F +++ D
Sbjct: 62 EYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA-----LRDLDAKGLIRG---DFILVSGD 113
Query: 112 VISEYPLKQMIEFHRGR----GGEASIMV------DEPSKYG----VVVMEETTGKV--- 154
V+S LK+++E H+ R MV ++ V+ ++ T ++
Sbjct: 114 VVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHY 173
Query: 155 --------EKFVEKPKNFVG---------NKINAGIYLLNPSVL 181
+ P +G + ++ I + +P VL
Sbjct: 174 EELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217 |
| >gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 30/210 (14%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M+AL+L G GTR++ +PK L + KPMI I+ K V +V + + ++ E++
Sbjct: 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELV 56
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L E+ K + E LGTA + ARD + + G+ +L DV ISE L
Sbjct: 57 KKLLPEWVKIFL-------QEEQLGTAHAVMCARDFI--EPGDDLLILYGDVPLISENTL 107
Query: 119 KQMIEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNK-INAGIY 174
K++IE H +G + +I+V ++P+ YG ++ + ++ + + P+ K IN GIY
Sbjct: 108 KRLIEEHNRKGADVTILVADLEDPTGYGRIIRDGGKYRIVEDKDAPEEEKKIKEINTGIY 167
Query: 175 LLNPSVLDRIELKPTSIEKEVFPEIAAENK 204
+ + L EV P+I EN
Sbjct: 168 VFSGDFL-----------LEVLPKIKNENA 186
|
Length = 448 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (153), Expect = 2e-11
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 19/236 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
L + + + + P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQ-NGTAISLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGF-WMDIGQPKDYI 224
V++ + LKP S E+ EI N+++ AM+ G+ W+D G + I
Sbjct: 182 DVVEMAKNLKP-SARGEL--EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
|
Length = 292 |
| >gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 61/276 (22%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN------ 54
+KA+I V G G + P T ++PK ++ +KPMI + ++ + A G+ E+VL +
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
Query: 55 -------YQPEVMLNFLKEFEKKLEIKITCS--------QETEPLGTAGPLALARDKLID 99
Y+ E +L + + E++ C ++ +PLG + AR + D
Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD 123
Query: 100 DSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGGE---ASIMVDEPSKYGVVVME 148
PF V+ DV+ + Y L MI G A M + S+Y V+ +
Sbjct: 124 ---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180
Query: 149 E---TTGKVEK---FVEKPKN---FVGNKINAGIYLLN-----------PSVLDRIELKP 188
E GKV + F+EKP + + G Y+L+ P RI+L
Sbjct: 181 EPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQL-- 238
Query: 189 TSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYI 224
+ E+A + + AM++ G D G+ Y+
Sbjct: 239 ----TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYM 270
|
Length = 297 |
| >gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLN 62
+IL G GTR++ S+PK L KPM+ + + EA VVL ++Q E +
Sbjct: 6 IILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVL--HHQKERIKE 60
Query: 63 FLKEFEKKLEIKITCSQETEPL-GTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ E+ + Q+ E GT G L I+ E +LN D+ PL +
Sbjct: 61 AVLEYFPGVIFHT---QDLENYPGTGGAL-----MGIEPKHERVLILNGDM----PLVEK 108
Query: 122 IEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVE-KPKNFVGNKI---NAG 172
E + +A I++ +P YG VV+E G+V+K VE K N KI NAG
Sbjct: 109 DELEKLLENDADIVMSVFHLADPKGYGRVVIEN--GQVKKIVEQKDANEEELKIKSVNAG 166
Query: 173 IYLLNPSVLDRI 184
+YL + +L+
Sbjct: 167 VYLFDRKLLEEY 178
|
Length = 430 |
| >gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ S+PK L A +PM+ H + A ++G + V + + E +
Sbjct: 8 AIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAA 64
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ EI Q+ E LGTA + AR+ L G+ VL D I+ L +
Sbjct: 65 AAAKIAPDAEI---FVQK-ERLGTAHAVLAAREALAGGYGD-VLVLYGDTPLITAETLAR 119
Query: 121 MIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVE 159
+ E A ++V +P+ YG ++++ G++ VE
Sbjct: 120 LRERLADG---ADVVVLGFRAADPTGYGRLIVKG--GRLVAIVE 158
|
Length = 446 |
| >gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 2e-10
Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 49/276 (17%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+I V G G + P T ++PK ++ +KPMI + ++ + A G+ E+VL + +
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
Query: 61 LNFLK---EFEKKLE------------------IKITCSQETEPLGTAGPLALARDKLID 99
N E E LE + I ++ +PLG + AR + D
Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD 123
Query: 100 DSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGGE---ASIMVDEPSKYGVVVME 148
+ PF V+ D+I + Y L MI G A M + S+Y V+ +
Sbjct: 124 N---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180
Query: 149 E---TTGKVEKFVE------KPKNFVGNKINAGIYLLNPSVLDRIE-LKPTSIEK----E 194
E GKV + VE +P+ + + G Y+L+ + +E +P + + +
Sbjct: 181 EPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTD 240
Query: 195 VFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLY 230
E+A + + AM++ G D G+ Y+ Y
Sbjct: 241 AIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 58/252 (23%), Positives = 102/252 (40%), Gaps = 54/252 (21%)
Query: 120 QMIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
+M+++H+ + + +I V +E S++G++ +E ++ +F EKPKN N + GIY
Sbjct: 135 KMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDEN-MRIVEFEEKPKNPKSNLASMGIY 193
Query: 175 LLNPSVLDRI----ELKPTSIE---KEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITG 226
+ N L E P S K V P E KL+A G+W D+G +
Sbjct: 194 IFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESL--- 250
Query: 227 LRLYLDFLQKNSSSKL-------------------ATGSNIIGNVLVHEGAKI-GD---- 262
++ L+ + L A + + N LV EG + G
Sbjct: 251 WEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLVVEGCVVYGTVEHS 309
Query: 263 ----GCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG-----AV 313
G +G + + + S+I + +G +E I+GE+ + D V G V
Sbjct: 310 VLFQGVQVG--EGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIGGGKEVITV 366
Query: 314 VLPHKEIKSSIV 325
+ ++ I V
Sbjct: 367 IGENEVIGVGTV 378
|
Length = 380 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 25/233 (10%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T +V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60
Query: 62 NFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
L + + ++ + + P G A + D + D VL ++ + L +
Sbjct: 61 QQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSA--LVLGDNIFYGHDLSDL 118
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYL--- 175
++ R A++ V +P +YGVV + G+ EKP N G+Y
Sbjct: 119 LKRAAARESGATVFAYQVSDPERYGVVEFDS-NGRAISIEEKPAQPKSNYAVTGLYFYDN 177
Query: 176 --------LNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP-GF-WMDIG 218
L PS R EL+ T + + E +L +L G+ W+D G
Sbjct: 178 RVVEIARQLKPS--ARGELEITDLNRVYL----EEGRLSVELLGRGYAWLDTG 224
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
+I + G G+R + + PKPL++ KPMI IE+L + + +
Sbjct: 2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICR-DEHNTKFH 60
Query: 64 LKEFEKKLEIKITCSQ-ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
L E K L T + + E LG A + LA D + +D +P + N D I E L +
Sbjct: 61 LDESLKLLAPNATVVELDGETLGAACTVLLAADLIDND--DPLLIFNCDQIVESDLLAFL 118
Query: 123 EFHRGRGGEASIMVDEPS--KYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
R R + ++ S ++ V ++E G+V + E K + + AG+Y
Sbjct: 119 AAFRERDLDGGVLTFFSSHPRWSYVKLDE-NGRVIETAE--KEPISDLATAGLY 169
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231 |
| >gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
ALIL G GTR+ PK L +PM+ AL+ + V + ++ +++
Sbjct: 8 ALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRA 64
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYPLKQ 120
+ + + + QE + LGT L A L + V+N D +++ +
Sbjct: 65 AFPDEDARFVL-----QE-QQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDD 118
Query: 121 MIEFHRGRG-GEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNF-------VGNKINAG 172
++ G ++ + +P YG VV G V VE K++ ++NAG
Sbjct: 119 FLKEAAGADLAFMTLTLPDPGAYGRVVRRN--GHVAAIVEA-KDYDEALHGPETGEVNAG 175
Query: 173 IYLLNPSVLDRIE 185
IY L LD +E
Sbjct: 176 IYYLR---LDAVE 185
|
Length = 456 |
| >gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-08
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 42/217 (19%)
Query: 1 MKALILVGGFGTRLRPL-TLSVPKPLVD-FANKPMILHQIEALKAVGVTE---VVLAINY 55
+ +IL GG GTRL PL S PK + F +K ++ ++ LK + + VV Y
Sbjct: 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEY 60
Query: 56 QPEVMLNFLKEFEKKLEIKITCSQETEPLG--TAGPLALA-RDKLIDDSGEPFFVLNSD- 111
+ V E E I EP G TA +ALA D VL SD
Sbjct: 61 RFLVREQL---PEGLPEENII----LEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDH 113
Query: 112 VISEYP-----LKQMIEFHRGRG----GEASIMVDEPS-KYGVVVMEETTG----KVEKF 157
+I + +K+ +E G I P YG + E G +V++F
Sbjct: 114 LIEDVEAFLKAVKKAVEAAEEGYLVTFG---IKPTRPETGYGYIEAGEKLGGGVYRVKRF 170
Query: 158 VEKP-----KNFV--GNKI-NAGIYLLNPSV-LDRIE 185
VEKP K ++ GN + N+GI+L L+ ++
Sbjct: 171 VEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELK 207
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. Length = 274 |
| >gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 5e-08
Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 63/363 (17%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ +IL G GTR++ ++PK L A +PM+ ++A + +G ++V+ + E
Sbjct: 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAE-- 62
Query: 61 LNFLKEFEKKLEIK-ITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYP 117
+ E L+ + +++ + LGT L + VL D ++
Sbjct: 63 -----QVEAALQGSGVAFARQEQQLGTGDAFLSGASAL-TEGDADILVLYGDTPLLRPDT 116
Query: 118 LKQMIEFHRGRGGEASIMVDE---PSKYGVVVMEETTGKVEKFVEK----PKNFVGNKIN 170
L+ ++ HR +G +I+ E + YG +V G VE+ VE+ + N
Sbjct: 117 LRALVADHRAQGSAMTILTGELPDATGYGRIVRGA-DGAVERIVEQKDATDAEKAIGEFN 175
Query: 171 AGIYLLN---PSVLDRIELKPTSIEK------EVFPEIAAENKLFAMVLPGFWM---DIG 218
+G+Y+ + P + RI + E ++ A+ + F + P + D
Sbjct: 176 SGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRA 235
Query: 219 QPKDYITGLRLYLDFLQKNSSSKLATGSNI-------IG-NVLVHEGA------KIGDGC 264
LR ++ + L I +G +V + G ++ DG
Sbjct: 236 GLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGV 295
Query: 265 LIGP---------------DKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309
IG H+ + + +G S VG +AR+ T+LGE VH+ + V +
Sbjct: 296 TIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355
Query: 310 NGA 312
A
Sbjct: 356 KNA 358
|
Length = 481 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 68/234 (29%)
Query: 118 LKQMIEFHRGRGGE---ASIMVDE--PSKYGVVVMEETTGKVEKFVEKPKNFVGNKINA- 171
+ ++ HR G + A + VDE S +G++ ++ G++ +F EKPK G+++ A
Sbjct: 132 YRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDD-GRITEFSEKPK---GDELKAM 187
Query: 172 -----------------------GIYLLNPSVL-DRIELKPTSIE--KEVFPEIAAENKL 205
GIY+ + VL D + P + KE+ PE + K+
Sbjct: 188 AVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKV 247
Query: 206 FAMVLPGFWMDIGQPKD-YITGLRLY------LDFLQKNSS----------SKL--ATGS 246
+ + G+W DIG + Y L L F + + SKL AT +
Sbjct: 248 QSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATIT 307
Query: 247 NIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGED 300
I I +GC+I K+ I S++G S + +E+ ++G D
Sbjct: 308 ESI----------IAEGCII---KNCSIHHSVLGIRSRIESGCTIEDTLVMGAD 348
|
Length = 429 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-07
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 245 GSNIIG-NVLVHEGAKI-----GDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILG 298
+++IG NV + +G I D IG ++ I SIIG ++ +G RV N+ I+G
Sbjct: 15 KNSVIGDNVRIGDGVTITNSILMDNVTIG--ANSVIVDSIIGDNAVIGENVRVVNLCIIG 72
Query: 299 EDVHVAD 305
+DV V D
Sbjct: 73 DDVVVED 79
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-07
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 27/143 (18%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
+IL GG +R+ K L+ KP++ ++ L+ EVV+ N
Sbjct: 1 GVILAGGRSSRMG-----GDKALLPLGGKPLLERVLDRLRPA-GDEVVVVTNRPE----- 49
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPL-----ALARDKLIDDSGEPFFVLNSDV--ISE 115
+ L + + +P GPL L + VL D+ ++
Sbjct: 50 -IAAALAGLGVPVVP----DPDPGQGPLAGLAAGLRAAP----DADAVLVLACDMPFLTP 100
Query: 116 YPLKQMIEFHRGRGGEASIMVDE 138
L++++ G + ++ V +
Sbjct: 101 DLLRRLLAALEASGADIAVPVYD 123
|
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178 |
| >gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 65/234 (27%), Positives = 96/234 (41%), Gaps = 44/234 (18%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLA--------- 52
KA+I V G GTR+ P T ++PK ++ +KP+I + + A G+TE+VL
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 53 ----INYQPEVML------NFLKEFEKKLEIKITCSQETEPLGTA-GPLALARDKLIDDS 101
+++ E ML L E + +T Q + L G L ++ D
Sbjct: 70 NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128
Query: 102 GEPFFVLNSDVI-SEYP-------LKQMIEFHRGRGGEASIMVDEP----SKYGVVVMEE 149
EP V+ DVI EY L +MI G + IMV EP + YGVV +
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIR-RFDETGHSQIMV-EPVADVTAYGVVDCKG 185
Query: 150 TTGK------VEKFVEKPKNFVG--NKINAGIYLLNPSVLDRIELKPTSIEKEV 195
+ VEKPK V N G Y+L+ + + P E+
Sbjct: 186 VELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEI 239
|
Length = 302 |
| >gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
++L G GTR+R T PK L A + M+ H + A + +V+ + + E +
Sbjct: 7 VIVLAAGAGTRMRSDT---PKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAP 63
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ E +++I + Q+ E GT + A + L D V DV + L
Sbjct: 64 AVAELAPEVDIAV---QD-EQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLAD 119
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEK----PKNFVGNKINAGI 173
++ H G +++ +D+P+ YG ++ + G+V VE+ P ++N+G+
Sbjct: 120 LVATHTAEGNAVTVLTTTLDDPTGYGRIL-RDQDGEVTAIVEQKDATPSQRAIREVNSGV 178
Query: 174 YLLNPSVL 181
Y + +VL
Sbjct: 179 YAFDAAVL 186
|
Length = 482 |
| >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A KPM+ H I+A +G V L + +++
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLL 62
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + + E LGT + A DD E +L DV IS L
Sbjct: 63 KQTLA------DEPLNWVLQAEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETL 114
Query: 119 KQMIEFHRGRGGEA--SIMVDEPSKYGVVVME--ETTGKVEKFVEKPKNFVGNKINAGIY 174
+++ + + +GG ++ +D P+ YG + E + G VE+ + +IN GI
Sbjct: 115 QRLRD-AKPQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQRQIQEINTGIL 173
Query: 175 LLNPSVLDR 183
+ N + L R
Sbjct: 174 VANGADLKR 182
|
Length = 456 |
| >gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 77/338 (22%), Positives = 138/338 (40%), Gaps = 56/338 (16%)
Query: 5 ILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64
IL G GTR++ S+PK L K ++ +++ + + ++ + +Q E + L
Sbjct: 6 ILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSL 62
Query: 65 KEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMI 122
LE + LGT + L G+ VLN DV + L+ ++
Sbjct: 63 AH-LPGLEFVE----QQPQLGTGHAVQQLLPVLKGFEGD-LLVLNGDVPLLRPETLEALL 116
Query: 123 EFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE-------KPKNFVGNKINAG 172
HR + +++ + P YG V + VE+ VE + +N N+INAG
Sbjct: 117 NTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVEQIVEDRDCTPAQRQN---NRINAG 172
Query: 173 IYLLNPSVLDRIELKPTSIEKEVFPEIAAENK--------LFAMVLPGFWMDIGQPKDYI 224
IY N L EV P++++ N +++ P +++ I
Sbjct: 173 IYCFNWPAL-----------AEVLPKLSSNNDQKEYYLTDTVSLLDPVMAVEVEDY-QEI 220
Query: 225 TGL--RLYL----DFLQKNSSSK-LATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS 275
G+ R L + LQ K + G I + + E ++G +I P H
Sbjct: 221 NGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTH-LRG 279
Query: 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAV 313
+++IG +G + +EN + +GE+V V V S+ +
Sbjct: 280 NTVIGSGCRIGPGSLIEN-SQIGENVTVLYSVVSDSQI 316
|
Length = 450 |
| >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN--YQPEV 59
A+IL G G+R+ +PK ++ KP++ H +EA A + E+V+ +
Sbjct: 3 AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLA 59
Query: 60 MLNFLKEFEKKLEI 73
K ++I
Sbjct: 60 KELAKYGLSKVVKI 73
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 |
| >gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN 54
M A+I+ GG GTR+ KPL++ KP+I +EAL+ + V E+++AI+
Sbjct: 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEALRKI-VDEIIVAIS 49
|
Length = 177 |
| >gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
A+IL G +R+ K L+ KP++ H ++A A G++ V++ + + +
Sbjct: 3 AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEAD 53
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 53/224 (23%)
Query: 121 MIEFHRGRGGEASI----MVDEP-SKYGVVVMEETTGKVEKFVEKPKNFVGNKINA---- 171
++ HR G + +I + + S +G++ +++T G++ +F EKPK G+++ A
Sbjct: 141 FVQKHRESGADITIACLPVDESRASDFGLMKIDDT-GRIIEFSEKPK---GDELKAMQVD 196
Query: 172 --------------------GIYLLNPSVLDRI--ELKPTSIE--KEVFPEIAAEN-KLF 206
GIY+ VL ++ PT+ + E+ P E +
Sbjct: 197 TTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQ 256
Query: 207 AMVLPGFWMDIGQPKD-YITGLRL---YLDFLQKNSSSKLATG------SNIIGNVLVHE 256
A + G+W DIG K Y L L F + + + T S I +
Sbjct: 257 AYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRIT-- 314
Query: 257 GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGED 300
+ I GC + + I S++G S +G +E+ ++G D
Sbjct: 315 DSIISHGCFL---RECKIEHSVVGLRSRIGEGVEIEDTVMMGAD 355
|
Length = 436 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-05
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 248 IIGNVLVHEGAKIGDGCLIGPDK---------HACISSSIIGWHSTVGRWARVENMTILG 298
+ G ++ E IG C+I + I ++IG +TVG +A + T+LG
Sbjct: 30 LEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLG 89
Query: 299 EDVHVADEVYSNGAVVLPHKEIKSSIV 325
E VH+ + V EIK S +
Sbjct: 90 EGVHIGNFV-----------EIKKSTI 105
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILG 298
S+K+ +I N ++ EG IGDG +IGP +IG +G + +
Sbjct: 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGP-------GVVIGDGVVIGDDCVIHPNVTIY 53
Query: 299 EDVHVADEVY-SNGAVV 314
E + D V +GAV+
Sbjct: 54 EGCIIGDRVIIHSGAVI 70
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 253 LVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312
L+ E IG+ +I S+IG + +G + N +IL ++V + +
Sbjct: 1 LIGESTVIGENAIIKN--------SVIGDNVRIGDGVTITN-SILMDNVTIGANSVIVDS 51
Query: 313 VVLPHKEIK--SSIVNPEIV 330
++ + I +VN I+
Sbjct: 52 IIGDNAVIGENVRVVNLCII 71
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN 54
A+IL GFG+R+ VPK ++ +P++ H +EA + E+V+ ++
Sbjct: 7 AVILAAGFGSRMG---NPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVS 56
|
Length = 230 |
| >gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
A+I G GTR VPK ++ +P++ H ++A A + EVV+ ++
Sbjct: 2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVS 51
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217 |
| >gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 36/187 (19%)
Query: 1 MKALILVGGFGTRLRPLTLSV-PKPLVDFA-NKPMILHQIEALKA-VGVTEVVLAINYQP 57
M +IL GG G+RL PL+ PK + + ++ ++ L + E ++ N
Sbjct: 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTN--- 58
Query: 58 EVMLNFLKEFEKKLEIKITCSQETEPLG--TAGPLALARDKLIDDSGEPFF-VLNSD-VI 113
E +KE +++I+ EP G TA +ALA + G+ VL SD VI
Sbjct: 59 EKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVI 118
Query: 114 S-------------EYPLKQMIEFHRGRGGEASIMVDEPS------KYGVVVMEETTGKV 154
+ + + I I P + G + E KV
Sbjct: 119 ADEEAFLNAVKKAEKAAEEGGIVTF-------GIPPTRPETGYGYIETGESIAENGVYKV 171
Query: 155 EKFVEKP 161
++FVEKP
Sbjct: 172 DRFVEKP 178
|
Length = 333 |
| >gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ +IL GG R+ K L++ KP++ H +E LK + V EVV++ N E
Sbjct: 1 ITGVILAGGKSRRM-----GGDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQERY 54
Query: 61 LNF 63
Sbjct: 55 ALL 57
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181 |
| >gnl|CDD|234725 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+ +IL GG R+ V K L + KP+I H IE L V E+V+ N
Sbjct: 4 ITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLAPQ-VDEIVINANRNLA 56
|
Length = 193 |
| >gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLA 52
M +IL GG R+R K L+ +P+I H I+ L+ V+ A
Sbjct: 5 MTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRLRPQVDVVVISA 50
|
Length = 192 |
| >gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-04
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN--YQPEV 59
A+I G G+R+ PK + KP++ H +EA A + E+++ + +P+
Sbjct: 6 AIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDF 62
Query: 60 MLNFLKEFEK 69
L + K
Sbjct: 63 AELLLAKDPK 72
|
Length = 227 |
| >gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-04
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLA 52
KPL D KPMI+ E G VV+A
Sbjct: 19 KPLADIGGKPMIVRVYERASKAGADRVVVA 48
|
Length = 245 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-04
Identities = 54/243 (22%), Positives = 90/243 (37%), Gaps = 71/243 (29%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLV---------DFANKPMILHQIEALKAVGVTEVVLAI 53
A+IL GG GTRL PLT KP V DF M+ G+ V +
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMV--------NSGIRNVGVLT 52
Query: 54 NYQPEVMLNFLKE------FEKKLEIKITCSQETEP----LGTAGPLALARDK-LIDDSG 102
Y+ + + L K + I Q+ + GTA A+ ++ I+ S
Sbjct: 53 QYKSRSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTAD--AIYQNLDYIERSD 110
Query: 103 EPFFV-LNSDVISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKP 161
+ + L+ D I ++M++FH G + +++
Sbjct: 111 PEYVLILSGDHIYNMDYREMLDFHIESGADITVVY------------------------- 145
Query: 162 KNFVGNKINAGIYLLNPSVLDRIELKPTSIE-------KEVFPEIAAENKLFAMVLPGFW 214
K + GIY+ + +L IEL K++ P + + K++A G+W
Sbjct: 146 ------KASMGIYIFSKDLL--IELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYW 197
Query: 215 MDI 217
DI
Sbjct: 198 ADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 245 GSNIIGNVLVHEGAKIGDGCLI-GPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHV 303
G I G V + EGA + G I GP IIG +G A + T+LG+ V
Sbjct: 11 GVTIKGPVWIGEGAIVRSGAYIEGP--------VIIGKGCEIGPNAYIRGYTVLGDGCVV 62
Query: 304 ADEVYSNGAVVLPHKEIKSSIV 325
E+K+SI+
Sbjct: 63 G-----------NSVEVKNSII 73
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163 |
| >gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 19/31 (61%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL D A KPMI H E A KA G+ EVV+A
Sbjct: 18 KPLADIAGKPMIQHVYERAKKAKGLDEVVVA 48
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239 |
| >gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL+D KPMI H E A +A GV EV +A
Sbjct: 19 KPLLDILGKPMIQHVYERAAQAAGVEEVYVA 49
|
Length = 238 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 258 AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPH 317
+ IGDG I ++ I S +G + TVG +A + +++GE+V + + V
Sbjct: 301 STIGDGVTI---TNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFV---------- 347
Query: 318 KEIKSSIV 325
EIK S +
Sbjct: 348 -EIKKSTI 354
|
Length = 458 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK 31
M A+IL GG GTRL LT ++ KP V F K
Sbjct: 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGK 34
|
Length = 380 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTIL 297
S+K+ G I NV++ G +IG+ +IGP I +IG S + + L
Sbjct: 103 SAKIGDGVTIGPNVVIGAGVEIGENVIIGP--GVVIGDDVVIGDGSRIHPNVVIYERVQL 160
Query: 298 GEDVHVADEVYSNGAVV 314
G++V + +GAV+
Sbjct: 161 GKNVII-----HSGAVI 172
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
| >gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+IL GG R+ K L+ KP+I ++ L+ + L IN P
Sbjct: 8 GVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPA 58
|
Length = 366 |
| >gnl|CDD|233966 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+IL GG R+ K LV+ KP+I H + L+ V+++ ++ N PE
Sbjct: 3 GVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARLRPQ-VSDLAISANRNPE 53
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 186 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.97 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.97 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.95 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.95 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.95 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.93 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.93 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.93 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.93 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.85 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.84 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.84 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.83 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.79 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.76 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.75 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.72 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.72 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.72 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.7 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.7 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.69 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.69 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.69 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.67 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.67 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.66 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.64 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.64 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.62 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.6 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.57 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.55 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.54 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.54 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.53 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.52 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.51 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.5 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.48 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.46 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.46 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.44 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.39 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.39 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.38 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.36 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.31 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.3 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.29 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 99.29 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.27 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.26 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.24 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.24 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.21 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.2 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.19 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 99.19 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.19 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.18 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.18 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.18 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.18 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.17 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.17 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.16 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 99.15 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.15 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.15 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.13 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.13 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.12 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.12 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.12 | |
| PLN02296 | 269 | carbonate dehydratase | 99.12 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.11 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.1 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.1 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.1 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.09 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.09 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.09 | |
| PLN02472 | 246 | uncharacterized protein | 99.09 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.08 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.08 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.08 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 99.07 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.07 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.06 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.06 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.06 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.06 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.06 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.05 | |
| PLN02296 | 269 | carbonate dehydratase | 99.05 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.05 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.04 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.04 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 99.04 | |
| PLN02472 | 246 | uncharacterized protein | 99.04 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 99.04 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 99.04 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.03 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.03 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.02 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.02 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.02 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 99.02 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.02 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 99.01 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.01 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.01 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.01 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.0 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.0 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.99 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.99 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.99 | |
| PLN02739 | 355 | serine acetyltransferase | 98.98 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.97 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.96 | |
| PLN02357 | 360 | serine acetyltransferase | 98.96 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 98.96 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.96 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.96 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.96 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.95 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.94 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.94 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.94 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.94 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.93 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.93 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.92 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.9 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.87 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.86 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.86 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.86 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.85 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.85 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.84 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.84 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.84 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.84 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.83 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.82 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.81 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.81 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.81 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.8 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.8 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.8 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.79 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.78 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.77 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.77 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 98.77 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.76 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.75 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.74 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.73 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.73 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.72 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.72 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.71 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.71 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.71 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.7 | |
| PLN02739 | 355 | serine acetyltransferase | 98.7 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.66 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.65 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.64 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 98.64 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.62 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.62 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.6 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.59 | |
| PLN02357 | 360 | serine acetyltransferase | 98.59 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.58 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.55 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.53 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.51 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.48 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.45 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.38 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.31 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.3 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.26 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 98.17 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 98.15 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 98.08 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.07 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 98.01 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.0 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.0 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.98 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.97 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.95 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.93 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.86 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.78 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.76 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.64 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.63 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.53 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.41 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.4 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.38 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.03 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 96.8 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 96.78 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 96.45 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.39 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 96.3 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.26 | |
| PF01983 | 217 | CofC: Guanylyl transferase CofC like; InterPro: IP | 95.43 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 95.17 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 95.06 | |
| COG1920 | 210 | Predicted nucleotidyltransferase, CobY/MobA/RfbA f | 94.96 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 94.94 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 94.72 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 94.71 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 94.23 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 94.22 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 93.84 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 93.68 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 93.66 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 92.93 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 92.89 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 92.72 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 92.69 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 92.62 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 92.54 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 92.33 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 92.23 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 91.93 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 91.6 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 91.24 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 91.01 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 90.83 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 90.35 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 90.28 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 89.48 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 89.34 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 89.33 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 89.14 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 89.05 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 88.86 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 88.66 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 87.73 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 87.54 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 86.48 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 85.88 | |
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 85.61 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 85.32 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 84.78 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 83.64 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 83.27 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 80.06 |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=396.96 Aligned_cols=324 Identities=52% Similarity=0.797 Sum_probs=290.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHH-HHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL-KEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~-~~~~~~~~~~v~~~~ 79 (331)
|+|+||.+|.|+||+|||..+|||++|++|+|||+|++++|.++|+++|++.+++..+.+..++ +.++..+++++.+..
T Consensus 10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~ 89 (371)
T KOG1322|consen 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST 89 (371)
T ss_pred eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence 7899999999999999999999999999999999999999999999999999999987555554 446677889999999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
++++.|+++.+..+++.+-...+.+|+|+++|.+++.++++++++|.+++++++++ ++++++||++..|+++++|.+
T Consensus 90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~ 169 (371)
T KOG1322|consen 90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR 169 (371)
T ss_pred ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence 99999999999888888876554489999999999999999999999999999998 788999999999997799999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK 236 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~ 236 (331)
|.|||+...++.+++|+|+|++++++.+...+.+++.+++|.++++.++++|.++|||.|+++|+||+++...+++....
T Consensus 170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~ 249 (371)
T KOG1322|consen 170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK 249 (371)
T ss_pred ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence 99999998999999999999999999998888899999999999999999999999999999999999999999988765
Q ss_pred ccCCc------------cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 237 NSSSK------------LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 237 ~~~~~------------i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..+.+ +.+.+.++.+|.|++|++||.+|+|+ +++.+++|++..+..++.++.|.. +++|.++.||
T Consensus 250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~--~gV~l~~s~il~~~~~~~~s~i~s-~ivg~~~~IG 326 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIE--DGVRLQDSTILGADYYETHSEISS-SIVGWNVPIG 326 (371)
T ss_pred cCCccccCCccccccEeeccccccCCccEECCCceECCCcEec--CceEEEeeEEEccceechhHHHHh-hhcccccccc
Confidence 44333 34556667778888888888888888 888889999999999999999988 9999999999
Q ss_pred cccEE-cCcEEccCeEEccCccCC
Q 020113 305 DEVYS-NGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 305 ~~~~i-~~~~v~~~~~i~~~~~~~ 327 (331)
.++.| +++++|.+++|....+.+
T Consensus 327 ~~~~id~~a~lG~nV~V~d~~~vn 350 (371)
T KOG1322|consen 327 IWARIDKNAVLGKNVIVADEDYVN 350 (371)
T ss_pred CceEEecccEeccceEEecccccc
Confidence 99988 578899998888766655
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=397.13 Aligned_cols=298 Identities=40% Similarity=0.661 Sum_probs=255.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||+|+||+|+|..+||||+||+|+|||+|++++|.++|++++++++++..+.+++++.+ +..++.++.++.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d-~~~~~~~I~y~~e 80 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD-GEGLGVRITYVVE 80 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc-ccccCCceEEEec
Confidence 899999999999999999999999999999999999999999999999999999999999999997 3445788999999
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.||+++++++.+.+..+ +|++++||.+++.++.+++++|+++.+.+++. +.++..||++..+++.+++.+|
T Consensus 81 ~~~lGTag~l~~a~~~l~~~---~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f 157 (358)
T COG1208 81 KEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF 157 (358)
T ss_pred CCcCccHHHHHHHHHhcCCC---cEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence 99999999999999999762 99999999999999999999999997777776 5556789999988542699999
Q ss_pred eecCC--CCCCCeEEEEEEEEChhhHhhcc-cCCCCcccchHHHHHhcCc-EEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 020113 158 VEKPK--NFVGNKINAGIYLLNPSVLDRIE-LKPTSIEKEVFPEIAAENK-LFAMVLPGFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 158 ~ek~~--~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~~~l~~l~~~~~-i~~~~~~~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
.|||. ...++++++|+|+|++++|+.+. ....+++.++++.+++.+. ++++.++++|.|+++|+||++++..+++.
T Consensus 158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 99993 56689999999999999999764 5567777789999999998 99999999999999999999999999864
Q ss_pred hcc------------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccce
Q 020113 234 LQK------------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMT 295 (331)
Q Consensus 234 ~~~------------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~ 295 (331)
... ..+..+++++.|++++.|+++++||++|.|+ +++.|.+|+|+++|.||+++.|.+ |
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~Sii~~~~~i~~~~~i~~-s 314 (358)
T COG1208 238 DGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIG--NGVEIKNSIIMDNVVIGHGSYIGD-S 314 (358)
T ss_pred ccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCCCEEC--CCcEEEeeEEEcCCEECCCCEEee-e
Confidence 321 2334456666666777777777777777777 667777777777777777777777 7
Q ss_pred EECCCcEECc
Q 020113 296 ILGEDVHVAD 305 (331)
Q Consensus 296 ~i~~~~~i~~ 305 (331)
+|+++|+||+
T Consensus 315 Ii~~~~~ig~ 324 (358)
T COG1208 315 IIGENCKIGA 324 (358)
T ss_pred EEcCCcEECC
Confidence 7777777774
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=377.96 Aligned_cols=317 Identities=24% Similarity=0.364 Sum_probs=233.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccC-------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLE------- 72 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~------- 72 (331)
|+|||||||+|+||+|+|..+||||+|++|+ |||+|++++|.++|+++++|++++..+.+++|+.+ +.+|+
T Consensus 4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~ 82 (380)
T PRK05293 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGI-GSPWDLDRINGG 82 (380)
T ss_pred EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhC-CCcccccCCCCC
Confidence 7999999999999999999999999999999 89999999999999999999999999999999975 23333
Q ss_pred eEEE--EeeCCc---ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCc
Q 020113 73 IKIT--CSQETE---PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKY 142 (331)
Q Consensus 73 ~~v~--~~~~~~---~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~ 142 (331)
+.+. +..+.+ +.|++++++.+++.+....+++|+|++||.+++.++.++++.|++.+++++++ .+++..|
T Consensus 83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y 162 (380)
T PRK05293 83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF 162 (380)
T ss_pred EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence 2232 333332 48999999999999964222389999999999999999999999888887766 2467889
Q ss_pred eEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhc-cc------CCCCcccchHHHHHhcC-cEEEEEeCceE
Q 020113 143 GVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL------KPTSIEKEVFPEIAAEN-KLFAMVLPGFW 214 (331)
Q Consensus 143 ~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~------~~~~~~~~~l~~l~~~~-~i~~~~~~~~~ 214 (331)
|++.+|++ ++|.++.|||..+.+++.++|+|+|+++++..+ .. ...++..++++.+++++ ++.+|.++++|
T Consensus 163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w 241 (380)
T PRK05293 163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241 (380)
T ss_pred CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence 99999887 899999999987778899999999999988543 21 12244568899988775 69999999999
Q ss_pred EecCCHHHHHHHHHHHHhhhccc----c------CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 215 MDIGQPKDYITGLRLYLDFLQKN----S------SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 215 ~~i~t~~d~~~a~~~~l~~~~~~----~------~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
.|+++|++|+++++.++...... + ...+.+.++|++++.|. ++.||++|.|+ . .+.+|+||++|.
T Consensus 242 ~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~Ig~~~~I~--~--~v~~s~ig~~~~ 316 (380)
T PRK05293 242 KDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLVVEGCVVY--G--TVEHSVLFQGVQ 316 (380)
T ss_pred EeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe-cCEECCCCEEc--c--eecceEEcCCCE
Confidence 99999999999999888653211 1 11122223333333331 33333333332 1 233456666666
Q ss_pred ECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
||++|+|.+ |+|+++|+|++++.|.+|+|++++.|+++..
T Consensus 317 I~~~~~i~~-svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 317 VGEGSVVKD-SVIMPGAKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred ECCCCEEEC-CEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence 666666655 6666666666666665555555555555443
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=375.06 Aligned_cols=321 Identities=20% Similarity=0.337 Sum_probs=250.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEe-
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS- 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~- 78 (331)
|+|||||||.|+||+|||..+||||+|++|| |||+|+|++|.++|+++|++++++..+.+.+|+.......+....+.
T Consensus 6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK00844 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT 85 (407)
T ss_pred eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence 6899999999999999999999999999999 99999999999999999999999999999999974111001111122
Q ss_pred --eCC------cccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEE
Q 020113 79 --QET------EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVV 145 (331)
Q Consensus 79 --~~~------~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v 145 (331)
.+. .+.|++++++.+++++.++..++|+|++||++++.++.+++++|.+++++++++ .+++..||++
T Consensus 86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv 165 (407)
T PRK00844 86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI 165 (407)
T ss_pred ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence 111 258999999999999965432369999999999999999999999988888776 2466789999
Q ss_pred EEcCCcCceeEeeecCCCCC-------CCeEEEEEEEEChhhH-hhccc------CCCCcccchHHHHHhcCcEEEEEe-
Q 020113 146 VMEETTGKVEKFVEKPKNFV-------GNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAAENKLFAMVL- 210 (331)
Q Consensus 146 ~~d~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~l~~l~~~~~i~~~~~- 210 (331)
.+|++ +++..+.|||..+. +.++++|+|+|++++| +.+.. ...++..++++.+++++++++|.+
T Consensus 166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~ 244 (407)
T PRK00844 166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS 244 (407)
T ss_pred EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence 99987 89999999986432 4799999999999986 44532 234566789999999999999976
Q ss_pred -----------CceEEecCCHHHHHHHHHHHHhhhccc------cC----C-ccCCCceEecc--eEEcCCcEECCCcEE
Q 020113 211 -----------PGFWMDIGQPKDYITGLRLYLDFLQKN------SS----S-KLATGSNIIGN--VLVHEGAKIGDGCLI 266 (331)
Q Consensus 211 -----------~~~~~~i~t~~d~~~a~~~~l~~~~~~------~~----~-~i~~~~~i~~~--~~i~~~~~i~~~~~I 266 (331)
.++|.|+++|++|+++++.+++..... .+ . ...+..++... ..+..++.||++|.|
T Consensus 245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I 324 (407)
T PRK00844 245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSII 324 (407)
T ss_pred cccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEE
Confidence 589999999999999999999643211 00 0 11222222221 122346777777777
Q ss_pred CCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 267 GPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 267 ~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+ ++.|++|+||++|.||++|.|.+ |+|+++|+|++++.|.+|+|+++++|+++...
T Consensus 325 ~---~~~i~~svIg~~~~I~~~~~i~~-sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 325 S---GATVRNSVLSPNVVVESGAEVED-SVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred C---CeeeEcCEECCCCEECCCCEEee-eEECCCCEECCCCEEEeeEECCCCEECCCCEE
Confidence 4 36777788888888888888887 88888888888888888888888888876543
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=358.69 Aligned_cols=316 Identities=23% Similarity=0.401 Sum_probs=239.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc-----CeEE
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL-----EIKI 75 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~v 75 (331)
-|+|||+|+|+||.|||+.++||-+|++|| +||+++|.++.++|+.+|.|++.+....+.+|+.. +..| +-.+
T Consensus 7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~-G~~w~l~~~~~~v 85 (393)
T COG0448 7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGR-GWPWDLDRKNGGV 85 (393)
T ss_pred EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhC-CCccccccccCcE
Confidence 489999999999999999999999999999 89999999999999999999999999999999997 2222 2223
Q ss_pred EEeeC-------CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCce
Q 020113 76 TCSQE-------TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYG 143 (331)
Q Consensus 76 ~~~~~-------~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~ 143 (331)
.++.. ....|+++++++.+..+..-.+|+++++.||.+++.|+.++++.|.+.++++|++ .++++.||
T Consensus 86 ~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fG 165 (393)
T COG0448 86 FILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFG 165 (393)
T ss_pred EEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcC
Confidence 33331 1346899999999999987777799999999999999999999999999999999 34578999
Q ss_pred EEEEcCCcCceeEeeecCCC-CCCC-eEEEEEEEEChhhHhhc-c------cCCCCcccchHHHHHhcCcEEEEEeCceE
Q 020113 144 VVVMEETTGKVEKFVEKPKN-FVGN-KINAGIYLLNPSVLDRI-E------LKPTSIEKEVFPEIAAENKLFAMVLPGFW 214 (331)
Q Consensus 144 ~v~~d~~~~~v~~~~ek~~~-~~~~-~~~~Giy~~~~~~l~~l-~------~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 214 (331)
++.+|++ +++.+|.|||.. +.++ ++++|+|+|+.++|..+ . ....+|..+++|.+++.+.+++|+++|||
T Consensus 166 im~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw 244 (393)
T COG0448 166 VMNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYW 244 (393)
T ss_pred ceEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchh
Confidence 9999999 999999999987 5554 89999999999988765 2 12356778899999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHhhhc------c----ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 215 MDIGQPKDYITGLRLYLDFLQ------K----NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 215 ~~i~t~~d~~~a~~~~l~~~~------~----~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
.||+|.++|++||+.+++.-. + ....+..|.+.+...+.+ .+|.|++||+|. + .|++|+|+.+++
T Consensus 245 ~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~---G-~V~nSVL~~~v~ 319 (393)
T COG0448 245 RDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIIS---G-TVENSVLFRGVR 319 (393)
T ss_pred hhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEE---e-EEEeeEEecCeE
Confidence 999999999999999997210 0 001111222222222222 244555555553 2 555555555555
Q ss_pred ECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
|+.+|.|.+ |+|..+|+||.||.|++++|..+++|++++.
T Consensus 320 I~~gs~i~~-svim~~~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 320 IGKGSVIEN-SVIMPDVEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred ECCCCEEEe-eEEeCCcEECCCCEEEEEEeCCCcEeCCCcE
Confidence 555555555 5555555555555555555555555554443
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=355.34 Aligned_cols=317 Identities=28% Similarity=0.437 Sum_probs=253.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEecc-ChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|++++++++++ ..+.+++++.+ +..|+.++.++.+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEEC
Confidence 689999999999999999999999999999999999999999999999999998 77889999876 3456677777777
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.+++.+..+ +|++++||++++.++.++++.|++++++++++ ..++..|+++.++++ +++..+
T Consensus 80 ~~~~G~~~al~~a~~~l~~~---~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~ 155 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL 155 (353)
T ss_pred CCCCCHHHHHHHHHHhcCCC---CEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence 77899999999999998543 89999999999999999999999988888777 466778999888765 789999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCC-----CCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.|||..+.+++.++|+|+|++.+++.+.... ...-.++++.+++++ ++++|.++++|.|++||+||+++++.++
T Consensus 156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll 235 (353)
T TIGR01208 156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL 235 (353)
T ss_pred EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence 9999877789999999999998887773211 111246788888876 5999999999999999999999999999
Q ss_pred hhhcccc-----CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEc-----cceEECCCc
Q 020113 232 DFLQKNS-----SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVE-----NMTILGEDV 301 (331)
Q Consensus 232 ~~~~~~~-----~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~-----~~~~i~~~~ 301 (331)
.+..... .+.+.+.+.|++++.| .++.|+.+|.|| ++|.|.+|+|+++|.||++|.|+ + |+|++++
T Consensus 236 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig--~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~-s~i~~~~ 311 (353)
T TIGR01208 236 DEVEREVQGVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIG--EDCIIENSYIGPYTSIGEGVVIRDAEVEH-SIVLDES 311 (353)
T ss_pred hhcccccCCcCCCCEEcCCEEECCCCEE-eCCEEECCcEEC--CCCEEcCcEECCCCEECCCCEEeeeEEEe-eEEcCCC
Confidence 8643221 1222333333333433 244444455556 66666666666666666666654 5 8888899
Q ss_pred EECcc-cEEcCcEEccCeEEccCccCC
Q 020113 302 HVADE-VYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 302 ~i~~~-~~i~~~~v~~~~~i~~~~~~~ 327 (331)
+|+.+ +.+.+++++++++|+++...+
T Consensus 312 ~i~~~~~~~~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 312 VIEGVQARIVDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred EEcCCcceeecCEEcCCCEECCCcccc
Confidence 99888 488889999999999887655
|
Alternate name: dTDP-D-glucose synthase |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=358.83 Aligned_cols=317 Identities=23% Similarity=0.387 Sum_probs=262.6
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc---CeEEEEe
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL---EIKITCS 78 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~---~~~v~~~ 78 (331)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++.|.++|+++|+|++++..+.+.+++.+..... ...+.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL 80 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence 69999999999999999999999999999 8999999999999999999999998888999987511100 1112221
Q ss_pred e-------CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCceEEE
Q 020113 79 Q-------ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYGVVV 146 (331)
Q Consensus 79 ~-------~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~~v~ 146 (331)
. ++.+.|++++++.+++.+.....++|++++||++++.++.++++.|.+++++++++ . +++..|+++.
T Consensus 81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 160 (361)
T TIGR02091 81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ 160 (361)
T ss_pred CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence 1 12357999999999999864333489999999999999999999998888777666 2 3567899999
Q ss_pred EcCCcCceeEeeecCCCCCCC-------eEEEEEEEEChhhHh-hccc------CCCCcccchHHHHHhcCcEEEEEeCc
Q 020113 147 MEETTGKVEKFVEKPKNFVGN-------KINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAAENKLFAMVLPG 212 (331)
Q Consensus 147 ~d~~~~~v~~~~ek~~~~~~~-------~~~~Giy~~~~~~l~-~l~~------~~~~~~~~~l~~l~~~~~i~~~~~~~ 212 (331)
+|++ +++..+.|||..+... ++++|+|+|+++++. .+.. ...++..++++.+++++++++|.+++
T Consensus 161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~ 239 (361)
T TIGR02091 161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG 239 (361)
T ss_pred ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence 9877 8999999998655555 899999999999874 3322 23345568899999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHhhhccc-----------cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcC
Q 020113 213 FWMDIGQPKDYITGLRLYLDFLQKN-----------SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGW 281 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~~l~~~~~~-----------~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~ 281 (331)
+|.|++|+++|+++++.++++.... ....+.++++|++.+.+ ++++||++|+|+ .+ +|++|+|++
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~--~~-~v~~s~i~~ 315 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIIS--GA-TVSHSVLGI 315 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEEC--CC-EEEccEECC
Confidence 9999999999999999999754211 11245677888888766 479999999998 65 889999999
Q ss_pred CCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 282 HSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 282 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
+|.||++|+|.+ |+|++++.||+++.|.+|+|+++++|+++..
T Consensus 316 ~~~I~~~~~i~~-sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~ 358 (361)
T TIGR02091 316 RVRIGSGSTVED-SVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV 358 (361)
T ss_pred CCEECCCCEEee-eEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence 999999999998 9999999999999999999999999998764
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=361.09 Aligned_cols=320 Identities=23% Similarity=0.350 Sum_probs=250.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcc-hHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-hhh---ccCeEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEK---KLEIKI 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~p-li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~---~~~~~v 75 (331)
|+|||||||.|+||+|+|..+||+|+|++|+| ||+|++++|.++|++++++++++..+.+.+|+.+ |.. ..+..+
T Consensus 16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i 95 (425)
T PRK00725 16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV 95 (425)
T ss_pred eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence 47999999999999999999999999999996 9999999999999999999999999999999975 210 011112
Q ss_pred EEe-------eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCce
Q 020113 76 TCS-------QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYG 143 (331)
Q Consensus 76 ~~~-------~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~ 143 (331)
.+. .++.+.|++++++.+++.+....+++|+|++||.+++.++.+++++|.+++++++++ + +++..||
T Consensus 96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG 175 (425)
T PRK00725 96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG 175 (425)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence 211 122358999999999999964323389999999999999999999999999888777 2 5678999
Q ss_pred EEEEcCCcCceeEeeecCCCC-------CCCeEEEEEEEEChhhHh-hccc------CCCCcccchHHHHHhcCcEEEEE
Q 020113 144 VVVMEETTGKVEKFVEKPKNF-------VGNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAAENKLFAMV 209 (331)
Q Consensus 144 ~v~~d~~~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~~~l~~l~~~~~i~~~~ 209 (331)
++.+|++ +++..|.|||..+ .+.++++|+|+|++++|. .+.. ...++..++++.+++++++++|.
T Consensus 176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~ 254 (425)
T PRK00725 176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP 254 (425)
T ss_pred EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence 9999987 8999999998643 257999999999999864 4421 22355678999999999999999
Q ss_pred eC-----------ceEEecCCHHHHHHHHHHHHhhhccc----------cCCccCCCceE-e--cceE-EcCCcEECCCc
Q 020113 210 LP-----------GFWMDIGQPKDYITGLRLYLDFLQKN----------SSSKLATGSNI-I--GNVL-VHEGAKIGDGC 264 (331)
Q Consensus 210 ~~-----------~~~~~i~t~~d~~~a~~~~l~~~~~~----------~~~~i~~~~~i-~--~~~~-i~~~~~i~~~~ 264 (331)
+. +||.|+++|++|+++++.++...... ......+.+.+ . .++. +..+++||++|
T Consensus 255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~ 334 (425)
T PRK00725 255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGC 334 (425)
T ss_pred ecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCc
Confidence 85 59999999999999999998632100 00111122211 1 1110 12377888888
Q ss_pred EECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 265 LIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 265 ~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
.| ++|.|++|+|+++|.||++|.|.+ |+|+++|.||+++.|.+|+|+++++|+++..
T Consensus 335 ~i---~~~~i~~svi~~~~~I~~~~~i~~-svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 335 II---SGAVVRRSVLFSRVRVNSFSNVED-SVLLPDVNVGRSCRLRRCVIDRGCVIPEGMV 391 (425)
T ss_pred EE---cCccccCCEECCCCEECCCCEEee-eEEcCCCEECCCCEEeeEEECCCCEECCCCE
Confidence 77 347778889999999999999887 8999999999999888888888888776644
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=361.14 Aligned_cols=304 Identities=22% Similarity=0.363 Sum_probs=236.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh--hcc--C-eE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE--KKL--E-IK 74 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~--~~~--~-~~ 74 (331)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+++|+.+.. ..+ + ..
T Consensus 4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~ 83 (429)
T PRK02862 4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE 83 (429)
T ss_pred EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence 5799999999999999999999999999999 9999999999999999999999998899999997511 111 1 12
Q ss_pred EEEeeCC--c---ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCceE
Q 020113 75 ITCSQET--E---PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYGV 144 (331)
Q Consensus 75 v~~~~~~--~---~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~~ 144 (331)
+....+. . ..|++++++.+++.+....+++|+|++||++++.++.++++.|.+.+++++++ . +++..||+
T Consensus 84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~ 163 (429)
T PRK02862 84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL 163 (429)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence 2222221 1 27999999999999864333489999999999999999999999988888776 2 34678999
Q ss_pred EEEcCCcCceeEeeecCCCC---------------------CCCeEEEEEEEEChhhHhhc-cc--CCCCcccchHHHHH
Q 020113 145 VVMEETTGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLDRI-EL--KPTSIEKEVFPEIA 200 (331)
Q Consensus 145 v~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~l-~~--~~~~~~~~~l~~l~ 200 (331)
+.+|++ +++..+.|||... ...++++|+|+|++++|..+ .. ...++..++++.++
T Consensus 164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~ 242 (429)
T PRK02862 164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI 242 (429)
T ss_pred EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence 999987 8999999998632 23589999999999999654 33 23456678999998
Q ss_pred hcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc-----------------ccC----------CccCCCceEecceE
Q 020113 201 AENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK-----------------NSS----------SKLATGSNIIGNVL 253 (331)
Q Consensus 201 ~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~-----------------~~~----------~~i~~~~~i~~~~~ 253 (331)
+.+++++|.++++|.|++||++|+++++.++..... .++ ..|+++|.| +++.
T Consensus 243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i-~~~~ 321 (429)
T PRK02862 243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII-KNCS 321 (429)
T ss_pred ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEE-CCcE
Confidence 888999999999999999999999999998832110 011 124555555 4555
Q ss_pred EcCCcEECCCcEECCCCCceEeCCEEcC-------------------CCEECCCcEEccceEECCCcEECcccEEc
Q 020113 254 VHEGAKIGDGCLIGPDKHACISSSIIGW-------------------HSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 254 i~~~~~i~~~~~I~~~~~~~i~~s~i~~-------------------~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
|+ +|+||++|.|| ++++|++|+|++ +|.||.+|+|.+ |+|+++|.||+++.+.
T Consensus 322 i~-~svi~~~~~Ig--~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~ 393 (429)
T PRK02862 322 IH-HSVLGIRSRIE--SGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIV 393 (429)
T ss_pred EE-EEEEeCCcEEC--CCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEe
Confidence 54 56777777777 677777777765 577777777777 7777777777777774
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-49 Score=360.19 Aligned_cols=319 Identities=19% Similarity=0.294 Sum_probs=247.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChH-HHHHHHHHhhhccCeEE---
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKI--- 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~v--- 75 (331)
|+|||||+|+|+||+|||..+||||+||+|| |||+|++++|.++|+++|++++++..+ .+++|+.+ +..|+.+.
T Consensus 3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~ 81 (369)
T TIGR02092 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRD 81 (369)
T ss_pred EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccC
Confidence 7899999999999999999999999999999 999999999999999999999999876 99999975 23344332
Q ss_pred ---EEee-CCccc--CChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ec--CCCCc-e
Q 020113 76 ---TCSQ-ETEPL--GTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VD--EPSKY-G 143 (331)
Q Consensus 76 ---~~~~-~~~~~--G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~--~~~~~-~ 143 (331)
.+.. +.... |+++++..+++.+....+++|+|++||++++.++.+++++|.+.+++++++ +. ++..| +
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~ 161 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT 161 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence 2222 22232 566678888888853222389999999999999999999999999988877 22 45667 4
Q ss_pred EEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHh-hccc----CCCCcccchHHHHHhcCcEEEEEeCceEEecC
Q 020113 144 VVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLD-RIEL----KPTSIEKEVFPEIAAENKLFAMVLPGFWMDIG 218 (331)
Q Consensus 144 ~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~-~l~~----~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~ 218 (331)
++..+++ +++..+.+++.......+++|+|+|+++++. .+.. .....-.++++.++++++++++.++++|.|++
T Consensus 162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg 240 (369)
T TIGR02092 162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN 240 (369)
T ss_pred EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence 5567665 7787765433333346789999999998764 3321 11112236778887778899999999999999
Q ss_pred CHHHHHHHHHHHHhhhcccc-----C----C--ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECC
Q 020113 219 QPKDYITGLRLYLDFLQKNS-----S----S--KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGR 287 (331)
Q Consensus 219 t~~d~~~a~~~~l~~~~~~~-----~----~--~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~ 287 (331)
||++|+++++.+++...... . . .+.+.+.|++++.| ++|+||++|.|+ +.|++|+|+++|.||+
T Consensus 241 t~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~----~~v~~s~i~~~~~I~~ 315 (369)
T TIGR02092 241 SVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE----GKVENSILSRGVHVGK 315 (369)
T ss_pred CHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe----eEEeCCEECCCCEECC
Confidence 99999999999887642110 1 1 12255666666666 467777888876 3578999999999999
Q ss_pred CcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 288 WARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 288 ~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
+|.|.+ |+|++++.|++++.+.+|+|+++++|+++...+
T Consensus 316 ~~~i~~-sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 316 DALIKN-CIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred CCEEEe-eEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence 999999 999999999999999999999999999876544
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=352.23 Aligned_cols=304 Identities=22% Similarity=0.343 Sum_probs=236.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhh---c-----c
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK---K-----L 71 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~---~-----~ 71 (331)
|+|||||||+|+||+|||..+||||+|++|+ |||+|+|++|.++|++++++++++..+.+.+|+.+... . .
T Consensus 4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 83 (436)
T PLN02241 4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG 83 (436)
T ss_pred eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence 7899999999999999999999999999997 99999999999999999999999999999999985110 0 0
Q ss_pred CeEEEEeeCC-----cccCChHHHHHHHhhccCCC---CCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cC
Q 020113 72 EIKITCSQET-----EPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DE 138 (331)
Q Consensus 72 ~~~v~~~~~~-----~~~G~~~al~~~~~~~~~~~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~ 138 (331)
...+.+..+. .+.|++++++.++..+.+.. .++|+|++||++++.++.+++++|.+++++++++ + ++
T Consensus 84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~ 163 (436)
T PLN02241 84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR 163 (436)
T ss_pred CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence 1233232222 36899999999887775321 2399999999999999999999999999988877 2 24
Q ss_pred CCCceEEEEcCCcCceeEeeecCCCCC---------------------CCeEEEEEEEEChhhHhhc-cc---CCCCccc
Q 020113 139 PSKYGVVVMEETTGKVEKFVEKPKNFV---------------------GNKINAGIYLLNPSVLDRI-EL---KPTSIEK 193 (331)
Q Consensus 139 ~~~~~~v~~d~~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~ 193 (331)
+..|+++.+|++ +++.++.|||..+. .+++++|+|+|++++|..+ +. ...++..
T Consensus 164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~ 242 (436)
T PLN02241 164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS 242 (436)
T ss_pred cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence 689999999887 89999999986442 3799999999999998644 21 2235667
Q ss_pred chHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc------c----------cC----------CccCCCc
Q 020113 194 EVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK------N----------SS----------SKLATGS 246 (331)
Q Consensus 194 ~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~------~----------~~----------~~i~~~~ 246 (331)
++++.++.++ ++++|.++++|.|+++|++|+++++.++..... . ++ ..|+++|
T Consensus 243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~ 322 (436)
T PLN02241 243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGC 322 (436)
T ss_pred HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCc
Confidence 8899999885 799999999999999999999999999864210 0 00 1244555
Q ss_pred eEecceEEcCCcEECCCcEECCCCCceEeCCEEcC----------------C---CEECCCcEEccceEECCCcEECccc
Q 020113 247 NIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGW----------------H---STVGRWARVENMTILGEDVHVADEV 307 (331)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~----------------~---~~ig~~~~i~~~~~i~~~~~i~~~~ 307 (331)
.|+ ++.|+ +|+|+++|.|+ ++|+|.+|+++. + +.||.+|.|++ ++|+++|.||+++
T Consensus 323 ~I~-~~~I~-~svI~~~~~Ig--~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~ 397 (436)
T PLN02241 323 FLR-ECKIE-HSVVGLRSRIG--EGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNV 397 (436)
T ss_pred EEc-CeEEE-eeEEcCCCEEC--CCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcc-eEecCCCEECCCc
Confidence 555 55553 56677777777 777777766644 2 36777777776 7777777777777
Q ss_pred EEc
Q 020113 308 YSN 310 (331)
Q Consensus 308 ~i~ 310 (331)
.+.
T Consensus 398 ~i~ 400 (436)
T PLN02241 398 VII 400 (436)
T ss_pred EEe
Confidence 764
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=312.05 Aligned_cols=312 Identities=35% Similarity=0.646 Sum_probs=257.2
Q ss_pred eEEEEeCC--CCcccCCCCCCCCCCCceeCCcchHHHHHHHHHH-cCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEe
Q 020113 2 KALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 2 ~avIlA~G--~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (331)
+||||-+| +|+||+||+-+.||||+|++|+|||.|.|+++.+ .|..+|+++.-++.+.+.+|+......+.+.+.|+
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL 83 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYL 83 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhh
Confidence 69999998 7899999999999999999999999999999999 57999999998888899999999888888899999
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEEEEcCCcCc
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v~~d~~~~~ 153 (331)
.++.+.|+++.+++-++.+-..+++.++|+++|.-+..+++++++.|+..+..++++ .++..+||-+.-|+.|++
T Consensus 84 ~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~e 163 (407)
T KOG1460|consen 84 REDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGE 163 (407)
T ss_pred ccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCc
Confidence 999999999999999999987777799999999999999999999999999999888 456789999999998999
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhccc--------------------CC---CCcccchHHHHHhcCcEEEEEe
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL--------------------KP---TSIEKEVFPEIAAENKLFAMVL 210 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~--------------------~~---~~~~~~~l~~l~~~~~i~~~~~ 210 (331)
++++.|||.+..++.+++|+|+|+++.|+.+.+ .+ -++++|+++-|+.++++++|..
T Consensus 164 vlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t 243 (407)
T KOG1460|consen 164 VLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYET 243 (407)
T ss_pred eEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEec
Confidence 999999999999999999999999999864410 01 1346788888888999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHhhhccccCCccC--CC--ceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEEC
Q 020113 211 PGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLA--TG--SNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVG 286 (331)
Q Consensus 211 ~~~~~~i~t~~d~~~a~~~~l~~~~~~~~~~i~--~~--~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig 286 (331)
.++|-.+-|+-+-+.+++.+|++++...+..+. ++ +.|-++++|++++.+.+.+.|||| ..||.+++||
T Consensus 244 ~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPN-------VSIga~vrvg 316 (407)
T KOG1460|consen 244 TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPN-------VSIGANVRVG 316 (407)
T ss_pred ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCC-------ceecCCceec
Confidence 999999999999999999999987655444332 12 346666666666666666666644 4555666666
Q ss_pred CCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 287 RWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 287 ~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
++++|++ |+|.++|+|.+|+++-+|+|+=+++||
T Consensus 317 ~GvRl~~-sIIl~d~ei~enavVl~sIigw~s~iG 350 (407)
T KOG1460|consen 317 PGVRLRE-SIILDDAEIEENAVVLHSIIGWKSSIG 350 (407)
T ss_pred CCceeee-eeeccCcEeeccceEEeeeeccccccc
Confidence 6666666 666666666666666665555555555
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=305.60 Aligned_cols=273 Identities=30% Similarity=0.473 Sum_probs=225.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEecc-ChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|||||||||.||||+|+|...||+|+|+.+||||+|+++.|..+|+++|.|++++ +...+++++.+ +++|+++++|..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence 8999999999999999999999999999999999999999999999999999987 45788888877 788999999999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
|+++.|.++|++.+.+++.++ +|++..||.++..++.++++.+.++..+++++ +.+|++||++.+|++ +++.+
T Consensus 80 Q~~p~GlA~Av~~a~~fv~~~---~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~ 155 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFVGDD---DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG 155 (286)
T ss_pred cCCCCcHHHHHHHHHhhcCCC---ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence 999999999999999999765 99999999987779999999999988888877 899999999999988 89999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhccc-CCC-Ccc---cchHHHHHhcCcE-EEEEeCceEEecCCHHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIEL-KPT-SIE---KEVFPEIAAENKL-FAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~-~~~-~~~---~~~l~~l~~~~~i-~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
+.|||..|.|+++-+|+|+|++.+++.++. ++. ..| .+.++.++++|.. ......|.|.|.+|++||++|++..
T Consensus 156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i 235 (286)
T COG1209 156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV 235 (286)
T ss_pred eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence 999999999999999999999999998743 222 222 4678999999974 4555678999999999999999988
Q ss_pred HhhhccccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECC
Q 020113 231 LDFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGR 287 (331)
Q Consensus 231 l~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~ 287 (331)
+...+......+.+++.+. +.+|... ++|+ ..+.+.+|.+|+-..++.
T Consensus 236 ~~~~~~~G~~~~~~~~~~~-~~~i~~~------~~~~--~~~~l~~~~~G~y~~~~~ 283 (286)
T COG1209 236 RTVSKRQGFKIACPEEIAW-NGWIDGP------GLIG--LASQLEKSGYGQYLLELL 283 (286)
T ss_pred HHHHhhcCCEEeChhHEEE-ecEEech------Hhhc--cccchhhcCcchhhhhhh
Confidence 8744433333344444444 4444433 3334 334444455655554443
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=330.70 Aligned_cols=313 Identities=23% Similarity=0.378 Sum_probs=252.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.|.++|++++++++++..+.+.+++.+. ..+.+..+
T Consensus 4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~ 75 (459)
T PRK14355 4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ 75 (459)
T ss_pred ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence 5799999999999986 789999999999999999999999999999999998888888888651 13556566
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.++... ++|++++||. +.+.+++++++.|.+.++++++. ..++..|+.+.+|++ +++.
T Consensus 76 ~~~~Gt~~al~~a~~~l~~~~-~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~ 153 (459)
T PRK14355 76 EEQLGTGHAVACAAPALDGFS-GTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL 153 (459)
T ss_pred CCCCCHHHHHHHHHHHhhccC-CcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence 778899999999999986422 3899999998 45677999999998877777766 456778899888887 8999
Q ss_pred EeeecCCC----CCCCeEEEEEEEEChhhH-hhccc---C---CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 020113 156 KFVEKPKN----FVGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 221 (331)
.+.|||.. ..++++++|+|+|+++.+ +.+.. . ......++++.+++++ ++.+|+++++ |.++++|+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~ 233 (459)
T PRK14355 154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA 233 (459)
T ss_pred EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence 99987632 124789999999999864 43421 1 1112246888898887 5999999887 99999999
Q ss_pred HHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 222 DYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 222 d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
+|+++++.++.+... .....|++++.|++++.|+++++||++|.|+ .+++|.+|+||++|.
T Consensus 234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~--~~~~I~~~~Ig~~~~ 311 (459)
T PRK14355 234 QLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIE--QGVVIKGCRIGDDVT 311 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEEC--CCCEEeCCEEcCCCE
Confidence 999998866654311 1123456777777888888888888899998 889999999999999
Q ss_pred ECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCccC
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIVN 326 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~ 326 (331)
|++++++.+ ++|++++.||+++.+. ++.|+++++|+.++..
T Consensus 312 I~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~ 353 (459)
T PRK14355 312 VKAGSVLED-SVVGDDVAIGPMAHLRPGTELSAHVKIGNFVET 353 (459)
T ss_pred ECCCeEEeC-CEECCCCEECCCCEECCCCEeCCCCEECCCccc
Confidence 999999988 9999999999999885 7888888888776543
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=310.93 Aligned_cols=320 Identities=22% Similarity=0.366 Sum_probs=245.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccC-hHHHHHHHHHhhh--ccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEK--KLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~--~~~~~v~~ 77 (331)
|||||+|+|.|+||.-++.+.|||||||+|+|||+|+|++|.++|+++++|++.++ ...++..+.+... .....+.+
T Consensus 10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i 89 (433)
T KOG1462|consen 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI 89 (433)
T ss_pred hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence 58999999999999999999999999999999999999999999999999999874 4677888765221 11122322
Q ss_pred ee-CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-------e-------cCCCCc
Q 020113 78 SQ-ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-------V-------DEPSKY 142 (331)
Q Consensus 78 ~~-~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-------~-------~~~~~~ 142 (331)
.. .....|++++++.....+..+ +||+++||.+++.++..+++.|+..++...++ . +....+
T Consensus 90 p~~~~~d~gtadsLr~Iy~kikS~---DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~ 166 (433)
T KOG1462|consen 90 PTDDNSDFGTADSLRYIYSKIKSE---DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR 166 (433)
T ss_pred ecccccccCCHHHHhhhhhhhccC---CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence 22 223669999999999999875 89999999999999999999999877765554 1 111234
Q ss_pred eEEEEcCCcCceeEeeec-----C------------C-CCCCCeEEEEEEEEChhhHhhcc--cCCCCcccchHHHHHhc
Q 020113 143 GVVVMEETTGKVEKFVEK-----P------------K-NFVGNKINAGIYLLNPSVLDRIE--LKPTSIEKEVFPEIAAE 202 (331)
Q Consensus 143 ~~v~~d~~~~~v~~~~ek-----~------------~-~~~~~~~~~Giy~~~~~~l~~l~--~~~~~~~~~~l~~l~~~ 202 (331)
.++..++.|+|+...... | . +..+++.++++|+|+.++++.|. ....+|..+++|+++++
T Consensus 167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk 246 (433)
T KOG1462|consen 167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK 246 (433)
T ss_pred ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence 566667766665544321 1 1 12367899999999999999995 45677888888887654
Q ss_pred Cc---------------------------------EEEEEe--CceEEecCCHHHHHHHHHH-HHhhhcc---------c
Q 020113 203 NK---------------------------------LFAMVL--PGFWMDIGQPKDYITGLRL-YLDFLQK---------N 237 (331)
Q Consensus 203 ~~---------------------------------i~~~~~--~~~~~~i~t~~d~~~a~~~-~l~~~~~---------~ 237 (331)
+. +++|.. ...+.+++|.-.|+++|+. .+.++.. .
T Consensus 247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~~ 326 (433)
T KOG1462|consen 247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYVK 326 (433)
T ss_pred hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchhh
Confidence 32 333443 3458899999999999952 2223211 1
Q ss_pred cCCccCCCceEecceEEcC-----CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 238 SSSKLATGSNIIGNVLVHE-----GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
..+-++..+.+++++.|++ .++||.+|.|| ++++|.+|++++|+.||++|.|.+ |+||.+++||+++.+++|
T Consensus 327 ~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig--~~~~v~nSilm~nV~vg~G~~Ien-sIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 327 KVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIG--ERVKVANSILMDNVVVGDGVNIEN-SIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred heeccchhhccCCCceecccceeeeeeecCCcccc--CCcEEEeeEeecCcEecCCcceec-ceecccceecCCCeeeee
Confidence 1133556666666666664 67899999999 999999999999999999999999 999999999999999999
Q ss_pred EEccCeEEccCccC
Q 020113 313 VVLPHKEIKSSIVN 326 (331)
Q Consensus 313 ~v~~~~~i~~~~~~ 326 (331)
+|+++.++.+..+.
T Consensus 404 ~Ig~~yvVeak~~~ 417 (433)
T KOG1462|consen 404 IIGPGYVVEAKGKH 417 (433)
T ss_pred EecCCcEEcccccc
Confidence 99999999944433
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=307.55 Aligned_cols=312 Identities=27% Similarity=0.406 Sum_probs=243.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||+|+||.. .+||-|-|++||||++|+++.....+.+++++|+++..+.+++.+.+. ..+.++.|
T Consensus 3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q 74 (460)
T COG1207 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQ 74 (460)
T ss_pred ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEe
Confidence 5799999999999998 899999999999999999999999999999999999999999988862 14778889
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
.+++||++|++++++.+.+..+.++||++||. +....++++++.|.+.++.++++ .++|..||.+..+++ +.|.
T Consensus 75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~ 153 (460)
T COG1207 75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT 153 (460)
T ss_pred cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence 99999999999999999554434799999999 45567999999999999988888 789999999999988 8999
Q ss_pred EeeecCC----CCCCCeEEEEEEEEChhhHhhc----ccCCCCccc---chHHHHHhcCc-EEEEEeCc--eEEecCCHH
Q 020113 156 KFVEKPK----NFVGNKINAGIYLLNPSVLDRI----ELKPTSIEK---EVFPEIAAENK-LFAMVLPG--FWMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l----~~~~~~~~~---~~l~~l~~~~~-i~~~~~~~--~~~~i~t~~ 221 (331)
.+.|..+ +.....+++|+|+|+...|..+ .+++...|+ |++..+..++. +.++..+. ....+++-.
T Consensus 154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~ 233 (460)
T COG1207 154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV 233 (460)
T ss_pred EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence 9988644 2345799999999999755433 455556665 45666666654 77777754 377899999
Q ss_pred HHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCC---------------
Q 020113 222 DYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD--------------- 269 (331)
Q Consensus 222 d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~--------------- 269 (331)
++.++.+.+..+.+. ....++++++.|.+++++..+++||++|+|||.
T Consensus 234 qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~ 313 (460)
T COG1207 234 QLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIK 313 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEE
Confidence 999998888776521 122345666666666666556666666666533
Q ss_pred CCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 270 KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 270 ~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
..|+|++|.|+++|.||++++|++++.|+++++||..++++++.|+.++..+
T Consensus 314 ~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~ 365 (460)
T COG1207 314 AYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAG 365 (460)
T ss_pred ecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCcccc
Confidence 2355556677777777777777777777777777777777777777554433
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=325.78 Aligned_cols=311 Identities=20% Similarity=0.309 Sum_probs=247.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.|.++|++++++++++..+.+++++.. ..+.++.+
T Consensus 8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~------~~i~~v~~ 78 (481)
T PRK14358 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG------SGVAFARQ 78 (481)
T ss_pred ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc------CCcEEecC
Confidence 6899999999999997 58999999999999999999999999999999999888888888753 23555666
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+....+ +|++++||+ +.+.+++++++.|.+.+++++++ ++++..||++.+|++ +++.
T Consensus 79 ~~~~Gt~~al~~~~~~l~~~~~-~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~ 156 (481)
T PRK14358 79 EQQLGTGDAFLSGASALTEGDA-DILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE 156 (481)
T ss_pred CCcCCcHHHHHHHHHHhhCCCC-cEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence 7788999999999998853222 799999998 55677999999999888888776 567788999999987 8999
Q ss_pred EeeecCCCCC----CCeEEEEEEEECh---hhHhhcccCCC---CcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHH
Q 020113 156 KFVEKPKNFV----GNKINAGIYLLNP---SVLDRIELKPT---SIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYI 224 (331)
Q Consensus 156 ~~~ek~~~~~----~~~~~~Giy~~~~---~~l~~l~~~~~---~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~ 224 (331)
+|.|||..+. ++++++|+|+|++ ++++.+..... .+..++++.+++++ ++.+|++.++|-.++.-.+|.
T Consensus 157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~ 236 (481)
T PRK14358 157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG 236 (481)
T ss_pred EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence 9999976432 4579999999995 45555533211 12247888888887 499999887766666555554
Q ss_pred HHHHH-HHhh-hc-----------------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEE
Q 020113 225 TGLRL-YLDF-LQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTV 285 (331)
Q Consensus 225 ~a~~~-~l~~-~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~i 285 (331)
.+++. ++.+ .. ..++..|++++.|+++++|++++.||++|.|+ ++|.|++|+|+++|.|
T Consensus 237 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~--~~~~i~~svI~~~~~I 314 (481)
T PRK14358 237 LAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG--AYSVVTDSVLHEGAVI 314 (481)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC--CCCEEeeeEECCCCEE
Confidence 44432 2222 10 12344577888899999998889999999999 8899999999999999
Q ss_pred CCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCcc
Q 020113 286 GRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIV 325 (331)
Q Consensus 286 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~ 325 (331)
+++++|.+ ++||+++.|++++.+. +++|++++.|++.+.
T Consensus 315 ~~~~~i~~-~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 315 KPHSVLEG-AEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE 354 (481)
T ss_pred eecceecC-CeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence 99999987 9999999999999885 688888888887654
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=322.15 Aligned_cols=309 Identities=19% Similarity=0.316 Sum_probs=231.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.|||||||.|+||+. ..||+|+|++|+|||+|++++|.+.+++++++++++..+.+++++.+ ..+.++.+
T Consensus 6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~~~~v~~ 76 (456)
T PRK14356 6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------EDARFVLQ 76 (456)
T ss_pred eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cCceEEEc
Confidence 4799999999999974 78999999999999999999999999999999999887777777653 12445556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+.+.|++++++.+++.+.....+++++++||+ +...+++.+++.+. ++++++. +.++..|+.+.. ++ +++.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~ 152 (456)
T PRK14356 77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA 152 (456)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence 67789999999999998643234899999998 44566899998875 4455555 667888998876 45 8999
Q ss_pred EeeecCCC------CCCCeEEEEEEEEChhhHhhc-c---cCC---CCcccchHHHHHhcC-cEEEEEeCc--eEEecCC
Q 020113 156 KFVEKPKN------FVGNKINAGIYLLNPSVLDRI-E---LKP---TSIEKEVFPEIAAEN-KLFAMVLPG--FWMDIGQ 219 (331)
Q Consensus 156 ~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l-~---~~~---~~~~~~~l~~l~~~~-~i~~~~~~~--~~~~i~t 219 (331)
.+.|||.. +.++++++|+|+|+++.++.+ + ... .....++++.+.+.+ ++.++.+.+ .|.+++|
T Consensus 153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t 232 (456)
T PRK14356 153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT 232 (456)
T ss_pred EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence 99998652 346788999999999987644 1 111 122346778877766 588888865 5799999
Q ss_pred HHHHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCC
Q 020113 220 PKDYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWH 282 (331)
Q Consensus 220 ~~d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~ 282 (331)
|+||.+++..+..+... .+...+++++.|.+++.|++++.||++|.|+ .+|.|++|+||++
T Consensus 233 p~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~~~i~~~ 310 (456)
T PRK14356 233 PAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIH--SHCWLRDAVVSSG 310 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEEC--CCeEEEeeEECCC
Confidence 99999988776655321 1223455555555556666677788888888 6788877888888
Q ss_pred CEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCcc
Q 020113 283 STVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIV 325 (331)
Q Consensus 283 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~ 325 (331)
|.|+++|.|.+ |+||++|.||+++.|. +++|++++.|+.++.
T Consensus 311 ~~I~~~~~i~~-~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~ 353 (456)
T PRK14356 311 ATIHSFSHLEG-AEVGDGCSVGPYARLRPGAVLEEGARVGNFVE 353 (456)
T ss_pred CEEeeeEEEcc-cceecccEECCceEECCCCEECCCCEecCCce
Confidence 88887777766 7777777777777775 666666666665543
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=320.19 Aligned_cols=308 Identities=19% Similarity=0.292 Sum_probs=227.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+.|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|++++++++++..+.+.+++.+.. ..+.+..+
T Consensus 5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~ 77 (482)
T PRK14352 5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ 77 (482)
T ss_pred ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence 4699999999999997 6899999999999999999999999999999999988788888876521 23445566
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+.+.|++++++.+++.+.....++|++++||+ +...++.++++.|.+.++.+++. ..++..|+.+..+++ +++.
T Consensus 78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~ 156 (482)
T PRK14352 78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT 156 (482)
T ss_pred CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence 77889999999999998542223799999998 34567999999998877776666 567888999888877 8999
Q ss_pred EeeecCCCCC----CCeEEEEEEEEChhhHhhc-c---cC---CCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHH
Q 020113 156 KFVEKPKNFV----GNKINAGIYLLNPSVLDRI-E---LK---PTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDY 223 (331)
Q Consensus 156 ~~~ek~~~~~----~~~~~~Giy~~~~~~l~~l-~---~~---~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~ 223 (331)
++.|||.... .+++++|+|+|+++.|..+ . .. ......++++++++.+ ++++|+++++|.|+++++.+
T Consensus 157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 9999987432 4578999999999988553 1 11 1122357889999887 69999999999999999887
Q ss_pred ------HHHHHHHHhhhcc-------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCC--
Q 020113 224 ------ITGLRLYLDFLQK-------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWH-- 282 (331)
Q Consensus 224 ------~~a~~~~l~~~~~-------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~-- 282 (331)
+.+++.++..+.+ ..+..|++++.|++++.|+++++||++|.|+ .+++|++|+||++
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~--~~~~i~~~~Ig~~~~ 314 (482)
T PRK14352 237 QLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVG--PDTTLTDVTVGEGAS 314 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEEC--CCCEEecCEECCCCE
Confidence 5556555554322 1234567777777777777777777777777 5566665555554
Q ss_pred --------------CEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 283 --------------STVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 283 --------------~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
|.||+++.+..+++|++++.||.++.+++++|++++
T Consensus 315 i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~ 364 (482)
T PRK14352 315 VVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGT 364 (482)
T ss_pred EeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCc
Confidence 444555555444555555555544444444444433
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=315.49 Aligned_cols=307 Identities=25% Similarity=0.389 Sum_probs=233.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|+++++++++++.+.+++++.++ + +.+..+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~--i~~~~~ 71 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----D--VNWVLQ 71 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----C--cEEEEc
Confidence 8999999999999997 789999999999999999999999999999999998888888887753 3 334445
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+..+ ++|+++.||. +...++..+++.|.+.+ ++++ .+++..|+.+.+|++ +++.
T Consensus 72 ~~~~G~~~ai~~a~~~l~~~--~~~lv~~~D~p~i~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~g~v~~d~~-g~v~ 146 (451)
T TIGR01173 72 AEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETLERLLEAHRQNG--ITLLTAKLPDPTGYGRIIREND-GKVT 146 (451)
T ss_pred CCCCchHHHHHHHHHhcCCC--CcEEEEECCcCCcCHHHHHHHHHHHhhCC--EEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence 56679999999999998643 2899999998 45567999999886643 4444 456677999888877 8899
Q ss_pred EeeecCCCC----CCCeEEEEEEEEChhhHhh-ccc---C---CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 020113 156 KFVEKPKNF----VGNKINAGIYLLNPSVLDR-IEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 221 (331)
.+.|||... ...++++|+|+|+++++.. ++. . ...+..++++.+++++ ++.+|+++++ |.++++|+
T Consensus 147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~ 226 (451)
T TIGR01173 147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL 226 (451)
T ss_pred EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence 999987532 2357899999999998533 322 1 1111246788888886 5999999887 99999999
Q ss_pred HHHHHHHHHHhhhc-----------------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 222 DYITGLRLYLDFLQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 222 d~~~a~~~~l~~~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
+|.+++..+..+.. ...+..+++++.|+++++|++++.||++|.|+ ++|.|.+++|+++|.
T Consensus 227 dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~~~i~~~~~ 304 (451)
T TIGR01173 227 QLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIG--PGCVIKNSVIGSNVV 304 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEEC--CCcEEeeeEecCCCE
Confidence 99888765544221 12234467778888888888888888888888 667777777777777
Q ss_pred ECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
|+++|.|.+ ++|+++|.||+++.|. +++|++++.|++++
T Consensus 305 I~~~~~i~~-~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~ 344 (451)
T TIGR01173 305 IKAYSVLEG-SEIGEGCDVGPFARLRPGSVLGAGVHIGNFV 344 (451)
T ss_pred EeeecEEec-ccccCCcEECCeeEECCCCEECCCcEEccce
Confidence 777777766 7777777777766664 45565555555443
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=288.08 Aligned_cols=230 Identities=72% Similarity=1.208 Sum_probs=205.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++++..+|++++++++++..+.+.+++.++....++.+.+..+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 89999999999999999999999999999999999999999999999999999999889999998764456677777666
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.+...+....+ +|++++||.+++.++.++++.|++++++++++ .++++.|+++.+|+++++|.++
T Consensus 81 ~~~~G~~~al~~a~~~~~~~~~-~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~ 159 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDDDE-PFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERF 159 (233)
T ss_pred CCCCccHHHHHHHHHHhccCCC-CEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEE
Confidence 7788999999999999965222 89999999999999999999999999988877 4566789999998722899999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.|||..+.++++++|+|+|++++++.+.....+.+.++++.+++++++.+|+++++|.|++||++|++|++.+|
T Consensus 160 ~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 160 VEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99998777899999999999999998866556677889999999999999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=302.61 Aligned_cols=320 Identities=20% Similarity=0.332 Sum_probs=248.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH--hhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~~~v~~~ 78 (331)
.|||++|.-+.+||.|+|...|++|||++|.|||+|+|++|.++|+.+++++++.+..++.+|+++ |...+...+..+
T Consensus 25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti 104 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI 104 (673)
T ss_pred eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence 489999999999999999999999999999999999999999999999999999999999999997 555555444444
Q ss_pred eCCcccCChHHHHHHHh--hccCCCCCcEEEEeCCeeccccHHHHHHHHhhcC-----CceEEEecCC-----CCceEEE
Q 020113 79 QETEPLGTAGPLALARD--KLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRG-----GEASIMVDEP-----SKYGVVV 146 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~--~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~-----~~~~i~~~~~-----~~~~~v~ 146 (331)
........+++++..-+ .+.. +|++++||++++.+|.+++++|++++ +-+||+..+. ..-..+.
T Consensus 105 ~s~~~~S~GDamR~id~k~litg----DFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~a 180 (673)
T KOG1461|consen 105 CSGESRSVGDAMRDIDEKQLITG----DFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIA 180 (673)
T ss_pred cCCCcCcHHHHHHHHHhcceeec----ceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEE
Confidence 44444555566554433 3332 99999999999999999999996543 3356662222 2334677
Q ss_pred EcCCcCceeEeeecC--C----------------CCCCCeEEEEEEEEChhhHhhcccCC-CCcccchHHHHHhc----C
Q 020113 147 MEETTGKVEKFVEKP--K----------------NFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAAE----N 203 (331)
Q Consensus 147 ~d~~~~~v~~~~ek~--~----------------~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~l~~l~~~----~ 203 (331)
+|..|.++..+.+.. . ....++.+++|-+|++.++..|.++. +....+++..++.. .
T Consensus 181 vd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~ 260 (673)
T KOG1461|consen 181 VDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGY 260 (673)
T ss_pred EcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCC
Confidence 788778999887511 0 11257899999999999999996542 22334555544432 3
Q ss_pred cEEEEEeCc--eEEecCCHHHHHHHHHHHHhhhc-----------------cccCCccCCCceEecceEEcCCcEECCCc
Q 020113 204 KLFAMVLPG--FWMDIGQPKDYITGLRLYLDFLQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGC 264 (331)
Q Consensus 204 ~i~~~~~~~--~~~~i~t~~d~~~a~~~~l~~~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~ 264 (331)
+|+++..+. |..++.+...|...++.+++||. .+...+-++.+.+...+.++.+++||.++
T Consensus 261 kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT 340 (673)
T KOG1461|consen 261 KIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGT 340 (673)
T ss_pred eEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccc
Confidence 688888765 88999999999999999999982 12233456777777788888888888888
Q ss_pred EECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 265 LIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 265 ~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
.|| .++.|.||+||.||.||+||+|.+ |.||+||+||+||.|.+|+|+++++|+++...+
T Consensus 341 ~Ig--~g~~I~NSVIG~~c~IgsN~~I~~-S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~ 400 (673)
T KOG1461|consen 341 KIG--SGSKISNSVIGANCRIGSNVRIKN-SFIWNNVTIGDNCRIDHAIICDDVKIGEGAILK 400 (673)
T ss_pred ccc--CCCeeecceecCCCEecCceEEee-eeeecCcEECCCceEeeeEeecCcEeCCCcccC
Confidence 888 888888888888888888888888 888888888888888888888888888887764
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=308.00 Aligned_cols=308 Identities=20% Similarity=0.282 Sum_probs=237.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+.|||||||.|+||++ ..||+|+|++|+|||+|+++.|..++++++++++++..+.+.+++.++ ...+.+..+
T Consensus 6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~ 78 (446)
T PRK14353 6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ 78 (446)
T ss_pred ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence 4799999999999985 679999999999999999999999999999999998888888877653 222334445
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+.... ++|++++||. + ....++.+++.+ +.++++++. ..++..|+.+.. ++ +++.
T Consensus 79 ~~~~G~~~sl~~a~~~l~~~~-~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~-g~v~ 154 (446)
T PRK14353 79 KERLGTAHAVLAAREALAGGY-GDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KG-GRLV 154 (446)
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CC-CeEE
Confidence 667899999999999885322 2899999998 3 445688888744 445566555 556678888777 44 7899
Q ss_pred EeeecCCCC----CCCeEEEEEEEEChhhH-hhccc---C---CCCcccchHHHHHhcCc-EEEEEeC-ceEEecCCHHH
Q 020113 156 KFVEKPKNF----VGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAAENK-LFAMVLP-GFWMDIGQPKD 222 (331)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~~~l~~l~~~~~-i~~~~~~-~~~~~i~t~~d 222 (331)
.+.|||... .+.+.++|+|+|+++.+ +.++. . ...+..++++.+++.+. +.++..+ ++|.+++||+|
T Consensus 155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d 234 (446)
T PRK14353 155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE 234 (446)
T ss_pred EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence 999987532 23688999999998765 33321 1 11223467888888775 8888886 46999999999
Q ss_pred HHHHHHHHHhhh-----c-------c-----ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEE
Q 020113 223 YITGLRLYLDFL-----Q-------K-----NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTV 285 (331)
Q Consensus 223 ~~~a~~~~l~~~-----~-------~-----~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~i 285 (331)
|.+++..+..+. . + .....|++++.|+++++|++++.||++|.|+ .++.|.+++||++|.|
T Consensus 235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~--~~~~i~~~~Ig~~~~I 312 (446)
T PRK14353 235 LAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIH--AFSHLEGAHVGEGAEV 312 (446)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEEC--CCeEEeccEECCCcEE
Confidence 999987554432 0 0 1235678888888888888899999999998 7788889999999999
Q ss_pred CCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 286 GRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 286 g~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
|+++.|..+|+||++|+||+++.+.+++|++++.++
T Consensus 313 g~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 313 GPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred CCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence 999999866999999999999988776666655443
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=311.18 Aligned_cols=308 Identities=23% Similarity=0.329 Sum_probs=233.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.|..+|++++++++++..+.+++++.. .++.++.+
T Consensus 6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~------~~~~~i~~ 76 (456)
T PRK09451 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD------EPLNWVLQ 76 (456)
T ss_pred ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc------CCcEEEEC
Confidence 5799999999999985 68999999999999999999999999999999999877778877754 13445556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.+++.+... ++|++++||. +.+.++.++++.|.+.+...... .+++..|+++.. ++ +++.++
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~--~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~-~~-g~V~~~ 152 (456)
T PRK09451 77 AEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITR-EN-GKVVGI 152 (456)
T ss_pred CCCCCcHHHHHHHHHhhccC--CcEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEe-cC-CeEEEE
Confidence 67889999999999988532 2899999998 55678999998876544222112 577788998754 45 799999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhHhh-cc---cC---CCCcccchHHHHHhcC-cEEEEE------eCce--EEec
Q 020113 158 VEKPKNF----VGNKINAGIYLLNPSVLDR-IE---LK---PTSIEKEVFPEIAAEN-KLFAMV------LPGF--WMDI 217 (331)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~---~~---~~~~~~~~l~~l~~~~-~i~~~~------~~~~--~~~i 217 (331)
.|||... .++++++|+|+|+++.|.. ++ .. ...+..++++.+++++ ++.+|. +.|+ |.|+
T Consensus 153 ~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di 232 (456)
T PRK09451 153 VEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQL 232 (456)
T ss_pred EECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHH
Confidence 9998532 2468999999999987753 32 11 1122357889999886 688886 4565 6789
Q ss_pred CCHHHHHHHHH--HHHh-hhcc--------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEEC
Q 020113 218 GQPKDYITGLR--LYLD-FLQK--------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVG 286 (331)
Q Consensus 218 ~t~~d~~~a~~--~~l~-~~~~--------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig 286 (331)
+++++|+++++ .++. .... ..+..+++++.|+++++|+.+++||++|.|+ ++|.|.+|+|+++|.|+
T Consensus 233 ~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~--~~~~i~~~~ig~~~~I~ 310 (456)
T PRK09451 233 ARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIG--AGCVLKNCVIGDDCEIS 310 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEEC--CCceEecCEEcCCCEEc
Confidence 99999999874 2222 2211 1122367788888888888888888888888 77888888888888888
Q ss_pred CCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 287 RWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 287 ~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
+++.|.+ |+|+++++|++++.|. ++.+++++.|++++
T Consensus 311 ~~~~i~~-~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~ 348 (456)
T PRK09451 311 PYSVVED-ANLGAACTIGPFARLRPGAELAEGAHVGNFV 348 (456)
T ss_pred CCEEEeC-CccCCCcEecCceEEeCCCEECCCceeccce
Confidence 8888876 7788888887777774 66666666666554
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=285.41 Aligned_cols=227 Identities=26% Similarity=0.453 Sum_probs=192.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh------------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~------------ 68 (331)
|+|||||||.|+||+|+|..+||||+||+|||+|+|+++.+..+|+++|++++++..+.+.+|+....
T Consensus 4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~ 83 (297)
T TIGR01105 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence 79999999999999999999999999999999999999999999999999999999899999986411
Q ss_pred ---------hccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--------ccHHHHHHHHhhcCCc
Q 020113 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGGE 131 (331)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~~~ 131 (331)
.++++++.++.+.++.|++++++++.+++.++ +|+|++||.+++ .++.++++.|.+.++.
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~---~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~ 160 (297)
T TIGR01105 84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDN---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCC---CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence 02466788888999999999999999999642 899999999886 4889999999877766
Q ss_pred eEEE--e-cCCCCceEEEEc----CCcCc---eeEeeecCCCC---CCCeEEEEEEEEChhhHhhcccC-CC-Ccc---c
Q 020113 132 ASIM--V-DEPSKYGVVVME----ETTGK---VEKFVEKPKNF---VGNKINAGIYLLNPSVLDRIELK-PT-SIE---K 193 (331)
Q Consensus 132 ~~i~--~-~~~~~~~~v~~d----~~~~~---v~~~~ek~~~~---~~~~~~~Giy~~~~~~l~~l~~~-~~-~~~---~ 193 (331)
.+++ + +++..||++.++ ++ ++ +.++.|||..+ .++++++|+|+|++++++.++.. .. ..+ .
T Consensus 161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt 239 (297)
T TIGR01105 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence 6555 3 468899999984 34 54 58889998654 47899999999999999988432 11 122 3
Q ss_pred chHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 194 EVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 194 ~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
++++.++++++++++.++|+|+|+++|++|++|+..+.
T Consensus 240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999988764
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=299.90 Aligned_cols=306 Identities=24% Similarity=0.411 Sum_probs=220.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|++++|.++|+++++++++++.+.+++++.+ + +.+..+
T Consensus 3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~--~~~~~~ 72 (458)
T PRK14354 3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R--SEFALQ 72 (458)
T ss_pred ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C--cEEEEc
Confidence 4799999999999985 78999999999999999999999999999999999888888877654 1 234445
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.++++++... ++|++++||. +...++.++++.|.+.+++++++ .+++..|+.+..|++ +++.
T Consensus 73 ~~~~g~~~al~~a~~~l~~~~-d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~ 150 (458)
T PRK14354 73 EEQLGTGHAVMQAEEFLADKE-GTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE 150 (458)
T ss_pred CCCCCHHHHHHHHHHHhcccC-CeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence 667899999999999986422 2799999997 45677999999998877777666 556677888888876 8899
Q ss_pred EeeecCCC----CCCCeEEEEEEEEChhh-Hhhccc---C---CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 020113 156 KFVEKPKN----FVGNKINAGIYLLNPSV-LDRIEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~~----~~~~~~~~Giy~~~~~~-l~~l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 221 (331)
.+.|||.. ....++++|+|+|+++. ++.++. . ......++++.+++.+ ++.+|+++++ |+++++++
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~ 230 (458)
T PRK14354 151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV 230 (458)
T ss_pred EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence 99998742 22468999999999974 444421 1 1111246677777765 5999998865 66888999
Q ss_pred HHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCC-
Q 020113 222 DYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHS- 283 (331)
Q Consensus 222 d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~- 283 (331)
||..++..+..+... ..+..|++++.|+++++|+.++.||++|.|+ .++.|.+|+|+++|
T Consensus 231 Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~ig~~~~ 308 (458)
T PRK14354 231 ALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIG--PGSRIVDSTIGDGVT 308 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEEC--CCcEEeccEECCCCE
Confidence 999987655433321 1234466667777777777777777888887 66666655555544
Q ss_pred ---------------EECCCcEEccceEECCCcEECcccEEcCcEEccCeEE
Q 020113 284 ---------------TVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 284 ---------------~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i 320 (331)
.||++|.|..+++||++|+|++++.+.+++|++++.+
T Consensus 309 I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i 360 (458)
T PRK14354 309 ITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKV 360 (458)
T ss_pred EEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEe
Confidence 4455555553455555555555555544444444433
|
|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=278.77 Aligned_cols=226 Identities=40% Similarity=0.729 Sum_probs=196.5
Q ss_pred EEEEeCC--CCcccCCCCCCCCCCCceeCCcchHHHHHHHHHH-cCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 3 ALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 3 avIlA~G--~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
||||||| .|+||+|+|..+||||+|++|+|||+|+++++.+ +|++++++++++..+.+.+|+.+..+..++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999 8999999999999999999999999999999999 699999999999888999999875444566777777
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCceEEEEc-CCcCc
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYGVVVME-ETTGK 153 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~~v~~d-~~~~~ 153 (331)
+..+.|++++++.+.+.+....+++|+|++||++++.++.++++.|++++++++++ + +++..||++.+| ++ ++
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~-g~ 159 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPST-GE 159 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCC-Ce
Confidence 77789999999999999853322389999999999999999999999998888877 2 356789999998 55 89
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhccc---------------------CCCCcccchHHHHHhcCcEEEEEeCc
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---------------------KPTSIEKEVFPEIAAENKLFAMVLPG 212 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---------------------~~~~~~~~~l~~l~~~~~i~~~~~~~ 212 (331)
|..+.|||..+.++++++|+|+|++++++.+.. ...++..++++.+++++++++|+++|
T Consensus 160 v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g 239 (257)
T cd06428 160 VLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDD 239 (257)
T ss_pred EEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCC
Confidence 999999998778899999999999999977632 11234468899999999999999999
Q ss_pred eEEecCCHHHHHHHHHH
Q 020113 213 FWMDIGQPKDYITGLRL 229 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~ 229 (331)
+|.|++||++|+++|+.
T Consensus 240 ~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 240 FWSQIKTAGSAIYANRL 256 (257)
T ss_pred eeecCCCHHHHHhHhhc
Confidence 99999999999999875
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=291.68 Aligned_cols=305 Identities=21% Similarity=0.303 Sum_probs=207.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++ ++++.|+++++.+.+++++.+.. .++++.....
T Consensus 3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~~~ 76 (430)
T PRK14359 3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQDL 76 (430)
T ss_pred ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--CceEEEEecC
Confidence 4799999999999987 7899999999999999999999987 78999999998888888887632 1334433333
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
+...|+++++..+.. . .|+|++++||..+.. ...++.+.+.++++++. ++++..|+.+..+ + +++..+
T Consensus 77 ~~~~gt~~al~~~~~----~-~d~vlv~~gD~p~~~--~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i 147 (430)
T PRK14359 77 ENYPGTGGALMGIEP----K-HERVLILNGDMPLVE--KDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI 147 (430)
T ss_pred ccCCCcHHHHhhccc----C-CCeEEEEECCccCCC--HHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence 445789999876321 1 238999999994321 23444454556666555 5667789887765 4 789999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhHhhccc----C---CCCcccchHHHHHhcC-cEEEEEeC-ceEEecCCHHHHH
Q 020113 158 VEKPKNF----VGNKINAGIYLLNPSVLDRIEL----K---PTSIEKEVFPEIAAEN-KLFAMVLP-GFWMDIGQPKDYI 224 (331)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l~~l~~----~---~~~~~~~~l~~l~~~~-~i~~~~~~-~~~~~i~t~~d~~ 224 (331)
.|++... ...+.++|+|+|++++|+.+.. . ...+..++++.+++.+ ++.++.++ ++|.|+++|+||.
T Consensus 148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~ 227 (430)
T PRK14359 148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA 227 (430)
T ss_pred EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence 9887532 2467899999999999876521 1 1122346778888775 58888886 5899999999999
Q ss_pred HHHHHHHhhhccc-----------cCCccCCCceEecceEEcC-----------CcEECCCcEECCCCCceEeCCEEcCC
Q 020113 225 TGLRLYLDFLQKN-----------SSSKLATGSNIIGNVLVHE-----------GAKIGDGCLIGPDKHACISSSIIGWH 282 (331)
Q Consensus 225 ~a~~~~l~~~~~~-----------~~~~i~~~~~i~~~~~i~~-----------~~~i~~~~~I~~~~~~~i~~s~i~~~ 282 (331)
.++..+..+.... ....+.+++.|.+++.|++ +++||++|.|+ . +++.+|+||++
T Consensus 228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~--~-~~i~~~~ig~~ 304 (430)
T PRK14359 228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIE--E-SIIENSDVGPL 304 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEe--c-cEEeCCEECCC
Confidence 9987666554221 0112333333333333333 33444455543 2 44556777777
Q ss_pred CEECCCcEEccceEECCCc----------EECcccEEcCcEEccCeEEccCc
Q 020113 283 STVGRWARVENMTILGEDV----------HVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 283 ~~ig~~~~i~~~~~i~~~~----------~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
|.|+++|.|.+ |+||++| +||+++.+.+|+|++++.|++++
T Consensus 305 ~~i~~~~~i~~-~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~ 355 (430)
T PRK14359 305 AHIRPKSEIKN-THIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGT 355 (430)
T ss_pred CEECCCcEEec-cEEcCcEEEcccEeccccccccccccCCEECCCCEECCCc
Confidence 77777776654 6666665 44455556666666666666653
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=277.16 Aligned_cols=229 Identities=39% Similarity=0.729 Sum_probs=196.6
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEe-ccChHHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
||||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|++++++++ ++..+.+.+++++ ...+++++.++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-~~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-GYKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-SGGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc-cccccccceeee
Confidence 799999999999999999999999999999 9999999999999999955555 4667889999987 344567888888
Q ss_pred CCcccCChHHHHHHHhhccCCC-CCcEEEEeCCeeccccHHHHHHHHhhcCCce--EEE---ecCCCCceEEEEcCCcCc
Q 020113 80 ETEPLGTAGPLALARDKLIDDS-GEPFFVLNSDVISEYPLKQMIEFHRGRGGEA--SIM---VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~--~i~---~~~~~~~~~v~~d~~~~~ 153 (331)
++.+.|++++++.+.+.+.... .++|++++||++++.++.++++.|.++++++ ++. ..+++.||++.+|++ ++
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~ 158 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR 158 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence 8889999999999999998763 2259999999999999999999999998844 333 466789999999987 89
Q ss_pred eeEeeecCCCCC-CCeEEEEEEEEChhhHhhcc----c--CCCCcccchHHHHHhcCc-EEEEEeCc--eEEecCCHHHH
Q 020113 154 VEKFVEKPKNFV-GNKINAGIYLLNPSVLDRIE----L--KPTSIEKEVFPEIAAENK-LFAMVLPG--FWMDIGQPKDY 223 (331)
Q Consensus 154 v~~~~ek~~~~~-~~~~~~Giy~~~~~~l~~l~----~--~~~~~~~~~l~~l~~~~~-i~~~~~~~--~~~~i~t~~d~ 223 (331)
|.++.|||..+. +.++++|+|+|++++|+.+. . ....+..++++.+++++. +.++.+++ +|.|++||++|
T Consensus 159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~ 238 (248)
T PF00483_consen 159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY 238 (248)
T ss_dssp EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence 999999999877 88999999999999998772 1 233445678999999886 55778888 79999999999
Q ss_pred HHHHHHHHh
Q 020113 224 ITGLRLYLD 232 (331)
Q Consensus 224 ~~a~~~~l~ 232 (331)
++|++.+++
T Consensus 239 ~~a~~~~~~ 247 (248)
T PF00483_consen 239 LEANMDLLN 247 (248)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998874
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=292.38 Aligned_cols=291 Identities=25% Similarity=0.387 Sum_probs=209.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.+.+.+ +++++++++..+.+.+++.. + +.+..+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~--~~~~~~ 69 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----W--VKIFLQ 69 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----c--cEEEec
Confidence 8999999999999986 78999999999999999999999985 89999998887777777653 2 334456
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++++... ++|++++||. +.+.+++++++.|++.++++++. ++++..|+++..+ + +++
T Consensus 70 ~~~~g~~~ai~~a~~~l~~~--~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v- 144 (448)
T PRK14357 70 EEQLGTAHAVMCARDFIEPG--DDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY- 144 (448)
T ss_pred CCCCChHHHHHHHHHhcCcC--CeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence 67789999999999998532 2899999997 56778999999998888888777 5677889998887 4 677
Q ss_pred EeeecCCCCC----CCeEEEEEEEEChhhHhh-ccc---CCCCcc---cchHHHHHhcCcEEEEEeCce--EEecCCHHH
Q 020113 156 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IEL---KPTSIE---KEVFPEIAAENKLFAMVLPGF--WMDIGQPKD 222 (331)
Q Consensus 156 ~~~ek~~~~~----~~~~~~Giy~~~~~~l~~-l~~---~~~~~~---~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~d 222 (331)
.+.||+..+. .+++++|+|+|++++|.. ++. .....+ .++++.+ .++.+|.+.++ |.++++|++
T Consensus 145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~ 221 (448)
T PRK14357 145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQ 221 (448)
T ss_pred EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHH
Confidence 7778764332 358999999999998644 321 111112 2455555 24788888887 777889999
Q ss_pred HHHHHHHHHhh----h-----c--------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEE
Q 020113 223 YITGLRLYLDF----L-----Q--------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTV 285 (331)
Q Consensus 223 ~~~a~~~~l~~----~-----~--------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~i 285 (331)
|..+...+... + . ..++.+|++++.|+++++|++++.||++|.|+ .+++|.+|+||++|.|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~--~~~~i~~s~Ig~~~~I 299 (448)
T PRK14357 222 LAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIG--PMTRIVDCEIGNNVKI 299 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEEC--CCceecccEECCCCEE
Confidence 98876554322 1 0 01234566667777777777777788888887 6666665666665554
Q ss_pred ----------------CCCcEEccceEECCCcEECcccEEcCc
Q 020113 286 ----------------GRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 286 ----------------g~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
|+++.|..+++|+++|+||+++.+.++
T Consensus 300 ~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 342 (448)
T PRK14357 300 IRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKS 342 (448)
T ss_pred eeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeecc
Confidence 444555444555555555555544333
|
|
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=275.40 Aligned_cols=226 Identities=27% Similarity=0.483 Sum_probs=192.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-hh-----------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE----------- 68 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~----------- 68 (331)
|+|||||||.|+||+|+|..+||+|+||+|||+|+|+++++..+|+++|++++++..+.+.+|+.. |.
T Consensus 4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~ 83 (297)
T PRK10122 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence 799999999999999999999999999999999999999999999999999999999999999863 10
Q ss_pred ---------hccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--------ccHHHHHHHHhhcCCc
Q 020113 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGGE 131 (331)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~~~ 131 (331)
..++.++.++.|.++.|++++++.+++++.++ +|+|+.||.++. .++.++++.|.+.+++
T Consensus 84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~---~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~ 160 (297)
T PRK10122 84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDN---PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCC---CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence 01356788888889999999999999999532 899999999875 4799999999888877
Q ss_pred eEEE---ecCCCCceEEEEc----CCcC---ceeEeeecCCCCC---CCeEEEEEEEEChhhHhhcccC-CCC----ccc
Q 020113 132 ASIM---VDEPSKYGVVVME----ETTG---KVEKFVEKPKNFV---GNKINAGIYLLNPSVLDRIELK-PTS----IEK 193 (331)
Q Consensus 132 ~~i~---~~~~~~~~~v~~d----~~~~---~v~~~~ek~~~~~---~~~~~~Giy~~~~~~l~~l~~~-~~~----~~~ 193 (331)
.+++ .+++..||++.+| ++ + +|..+.|||..+. ++++++|+|+|++++++.+... ... ...
T Consensus 161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt 239 (297)
T PRK10122 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence 6555 3567899999996 34 5 6789999987543 7899999999999999888431 111 124
Q ss_pred chHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 194 EVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 194 ~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
++++.+++++++.+|.++|+|+|+++|++|++|+..+
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 7888999999999999999999999999999999987
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=274.11 Aligned_cols=226 Identities=23% Similarity=0.411 Sum_probs=193.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEecc-ChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+|+|..+||+|+|++|||||+|+++.|..+|+++|++++.+ ..+.+++++.+ +++|++++.+..
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~ 82 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV 82 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence 7899999999999999999999999999999999999999999999999987764 45778888876 456888898999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+..+.|+++++..+.+++.++ +++++.||.+ ++.++.++++.|.+.+++++++ +.+++.||++.+|++ +++.
T Consensus 83 q~~~~Gta~Al~~a~~~i~~~---~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~ 158 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFIGGD---DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI 158 (292)
T ss_pred CCCCCCHHHHHHHHHHHhCCC---CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence 999999999999999999643 7888999975 5789999999998887788776 678899999999987 8999
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccC-C-CCcc---cchHHHHHhcCcEEE-EEeCc-eEEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-P-TSIE---KEVFPEIAAENKLFA-MVLPG-FWMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-~-~~~~---~~~l~~l~~~~~i~~-~~~~~-~~~~i~t~~d~~~a~~ 228 (331)
++.|||..+.++++++|+|+|++++++.++.- + ...+ .++++.+++++++.. +...+ .|+|++||++|++|+.
T Consensus 159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~ 238 (292)
T PRK15480 159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 238 (292)
T ss_pred EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHH
Confidence 99999988889999999999999999877321 1 1112 467888888888643 45567 4999999999999988
Q ss_pred HHH
Q 020113 229 LYL 231 (331)
Q Consensus 229 ~~l 231 (331)
.+.
T Consensus 239 ~~~ 241 (292)
T PRK15480 239 FIA 241 (292)
T ss_pred HHH
Confidence 765
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=288.82 Aligned_cols=306 Identities=21% Similarity=0.336 Sum_probs=220.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|+.++++++++..+.+++++.+.. .+.++.+
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~-----~i~~v~~ 73 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP-----GLEFVEQ 73 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----CeEEEEe
Confidence 5789999999999986 7899999999999999999999999999999999988777888776421 2444556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+....+ ++++++||. +.+.+++.+++.|.+.+++++++ ..++..|+.+.+|++ +++.
T Consensus 74 ~~~~G~~~sv~~~~~~l~~~~~-~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~ 151 (450)
T PRK14360 74 QPQLGTGHAVQQLLPVLKGFEG-DLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE 151 (450)
T ss_pred CCcCCcHHHHHHHHHHhhccCC-cEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence 6678999999999998864222 799999999 56678999999999888887766 467778999999887 8999
Q ss_pred EeeecCC----CCCCCeEEEEEEEEChhhHhhc-ccC---CCCcc---cchHHHHHhcCcEEEEEeCce--EEecCCHHH
Q 020113 156 KFVEKPK----NFVGNKINAGIYLLNPSVLDRI-ELK---PTSIE---KEVFPEIAAENKLFAMVLPGF--WMDIGQPKD 222 (331)
Q Consensus 156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l-~~~---~~~~~---~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~d 222 (331)
++.|||. ...++++++|+|+|+++.|..+ +.- ....+ .+.++.+. .+..+.+.++ +..+++|+|
T Consensus 152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~d 228 (450)
T PRK14360 152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQ 228 (450)
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHH
Confidence 9999974 2346799999999999877654 211 11112 23455553 2455666655 566999999
Q ss_pred HHHHHHHHHhhhcc----------c-------cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe----------
Q 020113 223 YITGLRLYLDFLQK----------N-------SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------- 275 (331)
Q Consensus 223 ~~~a~~~~l~~~~~----------~-------~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------- 275 (331)
+..+...+...... . ....+++++.|++++.|+.++.||++|.|+ +++.|.
T Consensus 229 l~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~--~~~~I~~~~I~~~~~I 306 (450)
T PRK14360 229 LAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIG--PGSLIENSQIGENVTV 306 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEEC--CCcEEEEEEEcCCCEE
Confidence 99887765443210 1 122345555555555665566666666666 445544
Q ss_pred ------CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 276 ------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 276 ------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
+|+|+++|.||++|+|+++++||++|+||+++.+.++++++++.|.
T Consensus 307 ~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~ 358 (450)
T PRK14360 307 LYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVN 358 (450)
T ss_pred eeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEec
Confidence 4566667777777777755777777777777776555555544443
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=268.10 Aligned_cols=225 Identities=28% Similarity=0.460 Sum_probs=191.9
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccC-hHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|++++++++++. .+.+.+++.+ ++.|++++.+..
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~ 79 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAV 79 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEee
Confidence 89999999999999999999999999999999999999999999999999988754 4678888875 345677787777
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+..+.|++++++.+.+.+..+ +++|++||.+ .+.++.++++.|.+++++++++ +.++..|+++.+|++ ++|.
T Consensus 80 ~~~~~G~~~al~~a~~~~~~~---~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 155 (240)
T cd02538 80 QPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL 155 (240)
T ss_pred CCCCCCHHHHHHHHHHhcCCC---CEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence 777889999999999998642 8999999984 5667999999998888887776 566778999999987 8999
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCcc-cchHHHHHhcCcEEEEEeC--ceEEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSIE-KEVFPEIAAENKLFAMVLP--GFWMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~-~~~l~~l~~~~~i~~~~~~--~~~~~i~t~~d~~~a~~ 228 (331)
.+.|||..+.++++++|+|+|++++++.+... ...++ .++++.+++++++.++.++ ++|.|++||++|.++++
T Consensus 156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~ 235 (240)
T cd02538 156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235 (240)
T ss_pred EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence 99999988778899999999999999877321 11122 3788999998888777776 99999999999999998
Q ss_pred HH
Q 020113 229 LY 230 (331)
Q Consensus 229 ~~ 230 (331)
.+
T Consensus 236 ~~ 237 (240)
T cd02538 236 FV 237 (240)
T ss_pred HH
Confidence 65
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=267.74 Aligned_cols=226 Identities=31% Similarity=0.520 Sum_probs=195.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhc-cCeE------
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIK------ 74 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~-~~~~------ 74 (331)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.++... .+.+
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 689999999999999999999999999999999999999999999999999999888899998764211 0122
Q ss_pred -------------EEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-ecCCC
Q 020113 75 -------------ITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEPS 140 (331)
Q Consensus 75 -------------v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~~~~~ 140 (331)
+.+..+.++.|++++++.+++.+.++ +|++++||.+++.++.++++.|.+.+++++++ +.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e---~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~~~~ 157 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDE---AFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQPPG 157 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCC---eEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEecCCC
Confidence 22344446789999999999999632 89999999999999999999999999998877 67788
Q ss_pred CceEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCH
Q 020113 141 KYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQP 220 (331)
Q Consensus 141 ~~~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~ 220 (331)
.||.+.+|+ +++..+.|||... +.++++|+|+|++++|+.+.....++..++++.+++++++.+|.++|+|.|++||
T Consensus 158 ~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~ 234 (254)
T TIGR02623 158 RFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTL 234 (254)
T ss_pred cccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCch
Confidence 999999885 6899999998644 6799999999999999888655556778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 020113 221 KDYITGLRLYLDF 233 (331)
Q Consensus 221 ~d~~~a~~~~l~~ 233 (331)
++|.+++..+.+.
T Consensus 235 ~~~~~~~~~~~~~ 247 (254)
T TIGR02623 235 RDKNYLEELWESG 247 (254)
T ss_pred HHHHHHHHHHHcC
Confidence 9999998876544
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=269.59 Aligned_cols=224 Identities=24% Similarity=0.436 Sum_probs=192.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEec-cChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+|||||||.|+||+|+|..+||+|+|++|||||+|+++.|..+|+++|+++++ ++.+.+++++.+ ++.|++++.+..+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence 68999999999999999999999999999999999999999999999998885 455778888876 4567888999988
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
+++.|++++++.+.+.+.++ +++++.||. +++.++.++++.|.+.+++++++ +.++..||++.+|++ ++|.+
T Consensus 80 ~~~~Gta~al~~a~~~l~~~---~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~ 155 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIGGD---PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS 155 (286)
T ss_pred cCCCCHHHHHHHHHHHhCCC---CEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence 88999999999999999643 789999997 46788999999998887777776 678889999999987 89999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCcc-cchHHHHHhcCcEEEEEe-Cce-EEecCCHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSIE-KEVFPEIAAENKLFAMVL-PGF-WMDIGQPKDYITGLRL 229 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~-~~~l~~l~~~~~i~~~~~-~~~-~~~i~t~~d~~~a~~~ 229 (331)
+.|||..+.++++++|+|+|++++++.+..- ...++ .++++.+++++++..+.. .++ |.|++||++|++|+..
T Consensus 156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~ 235 (286)
T TIGR01207 156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF 235 (286)
T ss_pred EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence 9999988889999999999999998876321 12222 478888999888766655 575 9999999999999775
Q ss_pred H
Q 020113 230 Y 230 (331)
Q Consensus 230 ~ 230 (331)
+
T Consensus 236 ~ 236 (286)
T TIGR01207 236 I 236 (286)
T ss_pred H
Confidence 5
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=254.99 Aligned_cols=226 Identities=33% Similarity=0.566 Sum_probs=194.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++..+.+++++.+ ..+++.++.++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 79 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD-GSRFGVRITYILQ 79 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc-hhhcCCeEEEEEC
Confidence 899999999999999999999999999999999999999999999999999999988889999876 2345667777777
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.++..+..+ ++++++||.+++.++.++++.|.+.+++++++ ..++..|+++.+|+ +++..+
T Consensus 80 ~~~~g~~~sl~~a~~~i~~~---~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~ 154 (236)
T cd04189 80 EEPLGLAHAVLAARDFLGDE---PFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL 154 (236)
T ss_pred CCCCChHHHHHHHHHhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence 77889999999999998622 89999999999999999999999888888766 45667889888874 689999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCC--CCc---ccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP--TSI---EKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~--~~~---~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.|||..+.+.+.++|+|+|++++++.+.... ... -.++++.+++.+ ++.+++++++|.+++||+||.++++.++
T Consensus 155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 9998776678999999999999988773211 111 146788888776 4999999999999999999999999887
Q ss_pred h
Q 020113 232 D 232 (331)
Q Consensus 232 ~ 232 (331)
+
T Consensus 235 ~ 235 (236)
T cd04189 235 D 235 (236)
T ss_pred h
Confidence 5
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=260.84 Aligned_cols=228 Identities=28% Similarity=0.421 Sum_probs=189.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhh------c----
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK------K---- 70 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~------~---- 70 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+..... .
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 899999999999999999999999999999999999999999999999999999998889988864110 0
Q ss_pred ----------cCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccc---cHHHHHHHHhhcCCceEEE--
Q 020113 71 ----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGRGGEASIM-- 135 (331)
Q Consensus 71 ----------~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~i~-- 135 (331)
.+.++.+..+..+.|++++++.+++.+..+ +|+|++||.++.. ++.++++.|.+.+++..++
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE---PFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEE 157 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCC---ceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 134666777777899999999999999642 8999999997653 4999999998777654333
Q ss_pred e--cCCCCceEEEEcCC---cCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCCC-----CcccchHHHHHhcC
Q 020113 136 V--DEPSKYGVVVMEET---TGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT-----SIEKEVFPEIAAEN 203 (331)
Q Consensus 136 ~--~~~~~~~~v~~d~~---~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~l~~l~~~~ 203 (331)
+ +++..|+++.+|++ .+++..+.|||. ...+.++++|+|+|++++|+.+..... ....++++.+++++
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~ 237 (267)
T cd02541 158 VPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE 237 (267)
T ss_pred cChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC
Confidence 2 35678999999851 258999999986 355789999999999999988743111 12236788999888
Q ss_pred cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 204 KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 204 ~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
++.+|+++++|.|++||++|+++++.+.
T Consensus 238 ~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 238 PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999864
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=253.63 Aligned_cols=215 Identities=28% Similarity=0.467 Sum_probs=185.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
+|||||||.|+||+|+|..+||+|+|++|+|||+|++++|.++|+++|++++++..+.+.+++.+ +.+++.+.+..+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~ 78 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP 78 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999988999999876 3467777777665
Q ss_pred -cccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHh--hcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 82 -EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR--GRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 82 -~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~--~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
++.|++++++.+++.+..+ +|++++||++++.++.++++.|. +.++.+++. .+++..++.+.+|++ +++.
T Consensus 79 ~~~~g~~~~l~~~~~~~~~~---~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~ 154 (221)
T cd06422 79 DELLETGGGIKKALPLLGDE---PFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR 154 (221)
T ss_pred CcccccHHHHHHHHHhcCCC---CEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence 6789999999999999642 89999999999999999999998 455555555 345678899999987 8899
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
.+.+||.. .++++|+|+|+++++..+... .....++++.+++++++.++.++++|.|++||++|.+|
T Consensus 155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~-~~~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 155 RGGGGAVA---PFTFTGIQILSPELFAGIPPG-KFSLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred ecccCCCC---ceEEEEEEEEcHHHHhhCCcC-cccHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99888753 799999999999999987543 22234788999999999999999999999999999864
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=260.80 Aligned_cols=226 Identities=25% Similarity=0.350 Sum_probs=189.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc---------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL--------- 71 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~--------- 71 (331)
|+|||+|||.|+||+|+|..+||+|+|++|+|+|+|+++++.++|+++|++++++..+.+.+|+.+. ..|
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~~~~~ 87 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLEKRVK 87 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhhhhhh
Confidence 7899999999999999999999999999999999999999999999999999999999999999741 111
Q ss_pred -------------CeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--------ccHHHHHHHHhhcCC
Q 020113 72 -------------EIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGG 130 (331)
Q Consensus 72 -------------~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~~ 130 (331)
+..+.+..+..+.|++++++.+.+.+.++ +|+|++||.+++ .++.++++.|.+.++
T Consensus 88 ~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~---~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~ 164 (302)
T PRK13389 88 RQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE---PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH 164 (302)
T ss_pred hHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCC---CEEEEeCcceecccccccccccHHHHHHHHHhcCC
Confidence 23566666777899999999999987532 899999999864 689999999988777
Q ss_pred ceEEE--ecCCCCceEEEEcC------CcCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCC--C---Ccccch
Q 020113 131 EASIM--VDEPSKYGVVVMEE------TTGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP--T---SIEKEV 195 (331)
Q Consensus 131 ~~~i~--~~~~~~~~~v~~d~------~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~--~---~~~~~~ 195 (331)
+.+++ ++++..||++.+++ +.+++..+.|||. .+.++++++|+|+|++++++.++... . .+..++
T Consensus 165 ~tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~ 244 (302)
T PRK13389 165 SQIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA 244 (302)
T ss_pred CEEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence 63333 66788999998863 1257999999997 34578999999999999998773211 1 122468
Q ss_pred HHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 196 FPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 196 l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
++.+++++++.+|.++|+|+|++||++|++|+..+
T Consensus 245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 89999988999999999999999999999998876
|
|
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=251.81 Aligned_cols=219 Identities=35% Similarity=0.620 Sum_probs=190.2
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+.+++.+. ..++.++.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCC
Confidence 69999999999999999999999999999999999999999999999999998888888888752 12355665666677
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEeee
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
..|++++++.+++.+..+ +|++++||++++.++.++++.|.+.+.++++. .++...|+.+.+|++ +++..+.|
T Consensus 80 ~~G~~~~l~~a~~~~~~~---~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (223)
T cd06915 80 PLGTGGAIKNALPKLPED---QFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE 155 (223)
T ss_pred CCcchHHHHHHHhhcCCC---CEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence 889999999999998432 89999999999889999999998877777666 445678898888887 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
||....+.+.++|+|+|++++++.+.....+.+.++++.++..+++.+|+++++|.||+|++||.+|
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 9876667899999999999999988554556677899999988899999999999999999999987
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=255.79 Aligned_cols=225 Identities=30% Similarity=0.543 Sum_probs=191.5
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhc-cCeEEE-----
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIKIT----- 76 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~-~~~~v~----- 76 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++|++++++..+.+++++.+..+. .++++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999874211 112221
Q ss_pred --Ee------------eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-ecCCCC
Q 020113 77 --CS------------QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEPSK 141 (331)
Q Consensus 77 --~~------------~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~ 141 (331)
+. .+..+.|++++++.+++.+..+ ++|++++||.+++.++.++++.|.+.+++++++ +.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~--~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 158 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD--ETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVHPPGR 158 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHHHHhcCCC--CeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEecCCCc
Confidence 11 1223567999999999999642 289999999999999999999999989988887 666788
Q ss_pred ceEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHH
Q 020113 142 YGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPK 221 (331)
Q Consensus 142 ~~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~ 221 (331)
|+.+.+|++ ++|..+.|||... +.++++|+|+|++++++.+.....++..++++.+++++++++|.++|+|.+++|++
T Consensus 159 ~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~ 236 (253)
T cd02524 159 FGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLR 236 (253)
T ss_pred ccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHH
Confidence 999999987 8999999998754 57899999999999998885544455568999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020113 222 DYITGLRLYL 231 (331)
Q Consensus 222 d~~~a~~~~l 231 (331)
+|.+++..+.
T Consensus 237 ~~~~~~~~~~ 246 (253)
T cd02524 237 DKQTLEELWN 246 (253)
T ss_pred HHHHHHHHHH
Confidence 9999987663
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=253.40 Aligned_cols=223 Identities=26% Similarity=0.394 Sum_probs=183.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh---h-------c
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE---K-------K 70 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~---~-------~ 70 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+++|+.+.. . .
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999986310 0 0
Q ss_pred ----------cCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccc---cHHHHHHHHhhcCCceEEE--
Q 020113 71 ----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGRGGEASIM-- 135 (331)
Q Consensus 71 ----------~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~i~-- 135 (331)
.+..+.+..+..+.|++++++.+++.+..+ +|+|++||.++.. ++.++++.|.+++++.+++
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~ 157 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDE---PFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEE 157 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCC---CEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEE
Confidence 023455666677889999999999998432 8999999997643 6999999999888875444
Q ss_pred e--cCCCCceEEEEcC---CcCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCCC-----CcccchHHHHHhcC
Q 020113 136 V--DEPSKYGVVVMEE---TTGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT-----SIEKEVFPEIAAEN 203 (331)
Q Consensus 136 ~--~~~~~~~~v~~d~---~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~l~~l~~~~ 203 (331)
+ +++..||++.+|. +.++|..+.|||. ...++++++|+|+|++++|+.+..... ....++++.+++.+
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~ 237 (260)
T TIGR01099 158 VPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE 237 (260)
T ss_pred CChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC
Confidence 2 3567899999872 2268999999984 345779999999999999988732111 11236788888889
Q ss_pred cEEEEEeCceEEecCCHHHHHHH
Q 020113 204 KLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 204 ~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
++++|+++|+|.|++||++|++|
T Consensus 238 ~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 238 TVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CEEEEEcceEEEeCCCHHHHhhC
Confidence 99999999999999999999874
|
Built to distinquish between the highly similar genes galU and galF |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=241.45 Aligned_cols=216 Identities=33% Similarity=0.652 Sum_probs=182.0
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|++++++++++..+.+.+++.+ ..+++.++.++.+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-~~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGD-GSKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCC-ccccCccEEEEECCC
Confidence 6899999999999999999999999999999999999999999999999999888888888875 233566677766667
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEeee
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
+.|+++++..+.+... ++|+|++||.+++.++.++++.|++.+++++++ ......|+++..|+ ++|.++.|
T Consensus 80 ~~g~~~~l~~~~~~~~----~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e 153 (220)
T cd06426 80 PLGTAGALSLLPEKPT----DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE 153 (220)
T ss_pred CCcchHHHHHHHhhCC----CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence 7899999987766542 289999999999999999999999888887777 23456789888874 79999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
||.. +.++++|+|+|++++++.+.........++++.+++++ ++.+|+++++|.+++||+||.+|+
T Consensus 154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8754 57899999999999999885443222346788888876 499999999999999999999874
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=241.07 Aligned_cols=211 Identities=40% Similarity=0.725 Sum_probs=184.4
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|++++++++++..+.+.+++.+. ..++..+.++.+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeCCC
Confidence 68999999999999999999999999999999999999999999999999998888888888762 22456777777777
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEeee
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
+.|++++++.+++.+..+ +|++++||++++.++.++++.|.+.+++++++ .+++..|+++.+|++ +++..+.|
T Consensus 80 ~~g~~~al~~~~~~~~~~---~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (217)
T cd04181 80 PLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE 155 (217)
T ss_pred CCccHHHHHHhhhhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence 789999999999998322 99999999999999999999999888888877 445778999999987 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccC---CCCcccchHHHHHhcCcEEEEEeCceEEecC
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELK---PTSIEKEVFPEIAAENKLFAMVLPGFWMDIG 218 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~ 218 (331)
||....++++++|+|+|++++++.++.. ..++..++++.+++++++.+|+++|+|.|++
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 9887667899999999999999877543 2455568899999889999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=229.17 Aligned_cols=230 Identities=29% Similarity=0.436 Sum_probs=196.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-------h------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-------F------ 67 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-------~------ 67 (331)
++|||+|||.|+||.|.|+..||-||||.+||+|+|.++.+..+|++++++|++.+...+++|+.. +
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~ 84 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR 84 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence 489999999999999999999999999999999999999999999999999999988888888753 0
Q ss_pred -----hh--ccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccc---cHHHHHHHHhhcCCceEEE--
Q 020113 68 -----EK--KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGRGGEASIM-- 135 (331)
Q Consensus 68 -----~~--~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~i~-- 135 (331)
-+ ....++.++.|.++.|.++|++.+.+.+.++ ||.|+.+|.+... .++++++.+.+.+.+...+
T Consensus 85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~E---pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~e 161 (291)
T COG1210 85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE---PFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEE 161 (291)
T ss_pred HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCC---ceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEE
Confidence 01 1246788999999999999999999999876 9999999997653 3899999999999877777
Q ss_pred e--cCCCCceEEE----EcCCcCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccC--CCCcc---cchHHHHHhc
Q 020113 136 V--DEPSKYGVVV----MEETTGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELK--PTSIE---KEVFPEIAAE 202 (331)
Q Consensus 136 ~--~~~~~~~~v~----~d~~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~--~~~~~---~~~l~~l~~~ 202 (331)
+ ++.++||++. .+.+..++..+.|||. +..|+++..|.|++++++|+.|+.. ....| .|.+..|++.
T Consensus 162 v~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~ 241 (291)
T COG1210 162 VPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKK 241 (291)
T ss_pred CCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence 3 5678999998 4443357999999985 4568999999999999999999542 12222 4678888999
Q ss_pred CcEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 020113 203 NKLFAMVLPGFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 203 ~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
+.+++|.+.|..+|++++..|++|+..+..+
T Consensus 242 ~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 242 EPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred CcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 9999999999999999999999999887654
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=219.18 Aligned_cols=176 Identities=22% Similarity=0.358 Sum_probs=144.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc-----CeEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL-----EIKI 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~v 75 (331)
|+|||||||.|+||+|+|..+||||+|++|+|||+|+++++.++|+++|++++++..+.+++|+++.. .| ...+
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~i 79 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSK-WSKPKSSLMIV 79 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcc-ccccccCcceE
Confidence 68999999999999999999999999999999999999999999999999999998899999998732 22 2356
Q ss_pred EEeeCCcccCChHHHHHH--HhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhc-----CCceEEE---ecCCC-----
Q 020113 76 TCSQETEPLGTAGPLALA--RDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGR-----GGEASIM---VDEPS----- 140 (331)
Q Consensus 76 ~~~~~~~~~G~~~al~~~--~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~~~~~i~---~~~~~----- 140 (331)
.+..+.++.|+++++... ...+. ++|++++||.+++.++.++++.|++. +++++++ +.++.
T Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~----~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~ 155 (217)
T cd04197 80 IIIMSEDCRSLGDALRDLDAKGLIR----GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT 155 (217)
T ss_pred EEEeCCCcCccchHHHHHhhccccC----CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence 666666777888887543 33332 28999999999999999999999874 6777766 33333
Q ss_pred -CceEEEEcCCcCceeEeeecCCCCC--------------------CCeEEEEEEEEChhhH
Q 020113 141 -KYGVVVMEETTGKVEKFVEKPKNFV--------------------GNKINAGIYLLNPSVL 181 (331)
Q Consensus 141 -~~~~v~~d~~~~~v~~~~ek~~~~~--------------------~~~~~~Giy~~~~~~l 181 (331)
.++++.+|++++++..+.|||..+. +++.++|+|+|+++++
T Consensus 156 ~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 156 GEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 2578888876589999999976433 6899999999999874
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=214.30 Aligned_cols=213 Identities=22% Similarity=0.395 Sum_probs=164.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChH---HHHHHHHHhhhccCeEEEEee
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~---~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|++++++++++... .+..++... ..+..+.+ .
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~-~ 77 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE-L 77 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE-e
Confidence 48999999999999999999999999999999999999999999999998864321 122222221 12445533 3
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE--ecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM--VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~--~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
+..+.|++++++.++..+..+ ++|++++||++++.++.++++.|.+.+.+++++ ..+...|+++.+|++ +++..+
T Consensus 78 ~~~~~g~~~~l~~a~~~l~~~--~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~-~~v~~~ 154 (231)
T cd04183 78 DGETLGAACTVLLAADLIDND--DPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDEN-GRVIET 154 (231)
T ss_pred CCCCCcHHHHHHHHHhhcCCC--CCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCC-CCEEEe
Confidence 456889999999999988432 289999999999999999999888777666655 335568999999987 899999
Q ss_pred eecCCCCCCCeEEEEEEEEChh-hH-hhcc----cC----CCCcccchHHHHHhcC-cEEEEEe-CceEEecCCHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPS-VL-DRIE----LK----PTSIEKEVFPEIAAEN-KLFAMVL-PGFWMDIGQPKDY 223 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~-~l-~~l~----~~----~~~~~~~~l~~l~~~~-~i~~~~~-~~~~~~i~t~~d~ 223 (331)
.||+. .+.+.++|+|+|+++ .+ +.+. .. ......++++.+++++ ++.++.+ .++|.|++||+||
T Consensus 155 ~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 155 AEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 88843 357899999999987 43 3332 11 1112246888888887 4999999 6899999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=212.61 Aligned_cols=183 Identities=26% Similarity=0.462 Sum_probs=150.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCe-------E
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEI-------K 74 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~-------~ 74 (331)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++.+ ...|+. .
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGS-GKEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhC-CCcccCCCCCCCEE
Confidence 68999999999999999999999999999 99999999999999999999999999999999875 222322 2
Q ss_pred EEEe----eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCC
Q 020113 75 ITCS----QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEET 150 (331)
Q Consensus 75 v~~~----~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~ 150 (331)
+.+. .+..+.|+++++..+.+.+...++++|+|++||++++.++.++++.|.+++++++++..
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------- 146 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------- 146 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence 3222 13467899999999999986432338999999999999999999999888776655422
Q ss_pred cCceeEeeecCCCCCCCeEEEEEEEEChhhHhhc-cc----CCCCcccchHHHHHhcCcEEEEEeCceEEec
Q 020113 151 TGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL----KPTSIEKEVFPEIAAENKLFAMVLPGFWMDI 217 (331)
Q Consensus 151 ~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~----~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i 217 (331)
+++|+|+|+++++..+ +. ...+...++++.+++++++.+|.++++|.|+
T Consensus 147 ------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 147 ------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred ------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 5799999999988543 22 2345567899999999899999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=213.50 Aligned_cols=211 Identities=28% Similarity=0.461 Sum_probs=162.2
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.+. .++.+.+..+..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA 77 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence 68999999999999999999999999999999999999999999999999999888888888752 244454444445
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecC---C--CCceEEEEcCCcCceeEe
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDE---P--SKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~---~--~~~~~v~~d~~~~~v~~~ 157 (331)
+.|++++++.+++.+. + +|++++||++++. ++++.|.+.+++.++++.+ . ..++... +++ +++..+
T Consensus 78 ~~g~~~s~~~~~~~~~-~---~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~ 148 (229)
T cd02523 78 ETNNIYSLYLARDFLD-E---DFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGI 148 (229)
T ss_pred hhCcHHHHHHHHHHcC-C---CEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEee
Confidence 7899999999999982 2 8999999998764 5667777777788777221 1 2333322 223 578888
Q ss_pred eecCCCCC-CCeEEEEEEEEChhhHhhccc---------CCCCcccchHHHHHhcCcEE--EEEeCceEEecCCHHHHHH
Q 020113 158 VEKPKNFV-GNKINAGIYLLNPSVLDRIEL---------KPTSIEKEVFPEIAAENKLF--AMVLPGFWMDIGQPKDYIT 225 (331)
Q Consensus 158 ~ek~~~~~-~~~~~~Giy~~~~~~l~~l~~---------~~~~~~~~~l~~l~~~~~i~--~~~~~~~~~~i~t~~d~~~ 225 (331)
.+||..+. ....++|+|+|+++.++.+.. ....+-.++++.++++.++. .+.. ++|.|+++|+||.+
T Consensus 149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~ 227 (229)
T cd02523 149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER 227 (229)
T ss_pred cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence 89886544 468999999999999876521 11222346788888744444 4444 89999999999998
Q ss_pred H
Q 020113 226 G 226 (331)
Q Consensus 226 a 226 (331)
|
T Consensus 228 a 228 (229)
T cd02523 228 A 228 (229)
T ss_pred h
Confidence 7
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=198.45 Aligned_cols=210 Identities=26% Similarity=0.436 Sum_probs=165.1
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||++ ..||+|+|++|+|||+|+++.+.++|+++++++++++.+.+.+++.+ .+ +.++.+..
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~--~~~~~~~~ 71 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PN--VEFVLQEE 71 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CC--cEEEECCC
Confidence 69999999999987 68999999999999999999999999999999999887777777764 23 33445566
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..|++++++.+++.++.. .++|++++||. +...++..+++.|.+.++++++. ..++..|+.+..+++ +++..+
T Consensus 72 ~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~ 149 (229)
T cd02540 72 QLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI 149 (229)
T ss_pred CCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence 789999999999998641 23899999998 34667999999998777766655 566778998888876 889999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhH-hhcccC------CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHHHH
Q 020113 158 VEKPKNF----VGNKINAGIYLLNPSVL-DRIELK------PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPKDY 223 (331)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~d~ 223 (331)
.||+... ...+.++|+|+|+++.+ +.+... ...+..++++.+++.+ ++.++.++|+ |+.++||.++
T Consensus 150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 9987422 13689999999998755 334221 1222357888888876 5999999765 8899999874
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=199.10 Aligned_cols=177 Identities=26% Similarity=0.444 Sum_probs=142.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh-----hccCeEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-----KKLEIKI 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-----~~~~~~v 75 (331)
|||||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|+++++|+++++.+.+.+++.+.. ...++.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 79999999999999999999999999999999999999999999999999999999888888887621 1112344
Q ss_pred EEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHH--HhhcCCceEEE---e--c-------CCCC
Q 020113 76 TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEF--HRGRGGEASIM---V--D-------EPSK 141 (331)
Q Consensus 76 ~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~--~~~~~~~~~i~---~--~-------~~~~ 141 (331)
.+..+..+.|++++++.+.+.+.+ +|++++||.+++.++.+++++ +...++++++. . . ....
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i~~----dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLIRS----DFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE 156 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcCCC----CEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence 455566788999999999998843 899999999999999999965 44445555544 1 1 1456
Q ss_pred ceEEEEcCCc--CceeEeeecCCC------------------CCCCeEEEEEEEEChhhH
Q 020113 142 YGVVVMEETT--GKVEKFVEKPKN------------------FVGNKINAGIYLLNPSVL 181 (331)
Q Consensus 142 ~~~v~~d~~~--~~v~~~~ek~~~------------------~~~~~~~~Giy~~~~~~l 181 (331)
++++.+|+++ .++..+.|++.. ..+++.++|+|+|+++++
T Consensus 157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 8899999886 466777776543 125799999999999864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=198.27 Aligned_cols=177 Identities=28% Similarity=0.503 Sum_probs=143.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhh--hccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--KKLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~--~~~~~~v~~ 77 (331)
|||||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|++++++++++.. +.+++++..+. ......+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 799999999999999999999999999999999999999999999999999998654 56777776531 111234445
Q ss_pred eeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-e--c--C-----------CCC
Q 020113 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-V--D--E-----------PSK 141 (331)
Q Consensus 78 ~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~--~--~-----------~~~ 141 (331)
..+....|++++++.+.+.+.+ +|+|++||.+++.++.++++.|++.++.++++ . . . ...
T Consensus 81 ~~~~~~~gt~~al~~~~~~i~~----d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKIKK----DFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE 156 (214)
T ss_pred ecCCCCcChHHHHHHHHhhcCC----CEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence 5567788999999999998733 89999999999999999999999988888877 1 1 1 124
Q ss_pred ceEEEEcCCcCceeEeeecCC------------------CCCCCeEEEEEEEEChhhH
Q 020113 142 YGVVVMEETTGKVEKFVEKPK------------------NFVGNKINAGIYLLNPSVL 181 (331)
Q Consensus 142 ~~~v~~d~~~~~v~~~~ek~~------------------~~~~~~~~~Giy~~~~~~l 181 (331)
+.++.+|+.+++++.+....+ ...+++.++|+|+|+++++
T Consensus 157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 678888888788888765211 1136899999999998864
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=202.51 Aligned_cols=218 Identities=24% Similarity=0.311 Sum_probs=158.5
Q ss_pred CeEEEEeCCCCcccCCCCC-CCCCCCceeCC-cchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILVGGFGTRLRPLTL-SVPKPLVDFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~-~~pK~llpi~g-~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (331)
|++||||||.|+||+|+|. .+||+|+|++| +|||+|+++.+...+ +++++|++++.. +.+++++.+ ....+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCCce
Confidence 8999999999999999996 79999999998 999999999999984 999999998754 445666654 123455
Q ss_pred EeeCCcccCChHHHHHHHhhccCC-CCCcEEEEeCCeecc--ccHHHHHHHHhh---cCCceEEE---ecCCCCceEEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLIDD-SGEPFFVLNSDVISE--YPLKQMIEFHRG---RGGEASIM---VDEPSKYGVVVM 147 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~-~~~~~lv~~~D~i~~--~~l~~~l~~~~~---~~~~~~i~---~~~~~~~~~v~~ 147 (331)
++.++.+.|++.++..++..+... .++.++|++||.++. .++.++++.+.+ .++.+++. ..+.++||++..
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~ 156 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA 156 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence 566777899999999999988632 123799999999765 457666765543 45566666 344578999999
Q ss_pred cCCc-C---ceeEeeecCCCCC--------CCeEEEEEEEEChhhHhh-cccC----------------CCCc---ccch
Q 020113 148 EETT-G---KVEKFVEKPKNFV--------GNKINAGIYLLNPSVLDR-IELK----------------PTSI---EKEV 195 (331)
Q Consensus 148 d~~~-~---~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l~~-l~~~----------------~~~~---~~~~ 195 (331)
+++. + +|..|.|||.... ..++++|+|+|+.+.+.. ++.. ..++ ..+.
T Consensus 157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA 236 (274)
T ss_pred CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 8652 2 8999999997431 248899999999876532 2100 0000 0111
Q ss_pred HH----------HHHhcCcEEEEEeCceEEecCCHHH
Q 020113 196 FP----------EIAAENKLFAMVLPGFWMDIGQPKD 222 (331)
Q Consensus 196 l~----------~l~~~~~i~~~~~~~~~~~i~t~~d 222 (331)
++ .|.+..++.+.+.+..|-|+|+.++
T Consensus 237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 22 1344456888888888999999765
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=187.53 Aligned_cols=213 Identities=23% Similarity=0.294 Sum_probs=153.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.+||||+|.|+||+ ||+|+|++|+|||+|+++.+.++ |+++|+|++++ +.+.+++.+ +++++.+..
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~~~ 69 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVMTS 69 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEEcC
Confidence 468999999999995 59999999999999999999998 89999998864 456666654 345665554
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhc-CCceEEE---ecCCC---CceE--EEEc
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGR-GGEASIM---VDEPS---KYGV--VVME 148 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~-~~~~~i~---~~~~~---~~~~--v~~d 148 (331)
+....|++ .+..++..+... .+.|++++||+ +....+..+++.|.+. +.+++++ +.++. .++. +..+
T Consensus 70 ~~~~~gt~-~~~~~~~~~~~~-~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 70 PDHPSGTD-RIAEVAEKLDAD-DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred cccCchhH-HHHHHHHhcCCC-CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 44556776 466666666431 12799999997 4466799999988765 5666555 33333 3333 5567
Q ss_pred CCcCceeEeeecCC-------CCCCCeEEEEEEEEChhhHhhcccC-CCCcc-cchHH--HHHhcCc-EEEEEeCceEEe
Q 020113 149 ETTGKVEKFVEKPK-------NFVGNKINAGIYLLNPSVLDRIELK-PTSIE-KEVFP--EIAAENK-LFAMVLPGFWMD 216 (331)
Q Consensus 149 ~~~~~v~~~~ek~~-------~~~~~~~~~Giy~~~~~~l~~l~~~-~~~~~-~~~l~--~l~~~~~-i~~~~~~~~~~~ 216 (331)
++ +++..+.+++. .+.+.++++|+|+|+++.++.+... ...++ .+.++ .+++++. +.++..+++|.+
T Consensus 148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~ 226 (239)
T cd02517 148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG 226 (239)
T ss_pred CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence 66 88888876542 1236799999999999999877432 11111 12222 3455664 889999889999
Q ss_pred cCCHHHHHHHHH
Q 020113 217 IGQPKDYITGLR 228 (331)
Q Consensus 217 i~t~~d~~~a~~ 228 (331)
+|||+||.++++
T Consensus 227 i~t~~dl~~a~~ 238 (239)
T cd02517 227 VDTPEDLERVEA 238 (239)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=186.85 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=153.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.++|||+|.|+||. +|+|+|++|+|||+|+++.|.++++++++|++++ +.+.+++.. ++.++.+..+.
T Consensus 4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~~~~~ 71 (245)
T PRK05450 4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVMTSPD 71 (245)
T ss_pred EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEECCCc
Confidence 48999999999993 5999999999999999999999999999998863 556666654 34566555555
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEE---e------cCCCCceEEEEcCC
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIM---V------DEPSKYGVVVMEET 150 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~---~------~~~~~~~~v~~d~~ 150 (331)
...|+.. +..+...+.....+.+++++||+ + ....+.++++.+...+.+.+++ . .++..++++ +|++
T Consensus 72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~ 149 (245)
T PRK05450 72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD 149 (245)
T ss_pred CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence 5556654 33344444211122689999999 3 4566899999887765555444 2 345566755 8877
Q ss_pred cCceeEeeecCCC----------CCCCeEEEEEEEEChhhHhhcccCC-CCc---c-cchHHHHHhcCcEEEEEeCc-eE
Q 020113 151 TGKVEKFVEKPKN----------FVGNKINAGIYLLNPSVLDRIELKP-TSI---E-KEVFPEIAAENKLFAMVLPG-FW 214 (331)
Q Consensus 151 ~~~v~~~~ek~~~----------~~~~~~~~Giy~~~~~~l~~l~~~~-~~~---~-~~~l~~l~~~~~i~~~~~~~-~~ 214 (331)
+++..|.|||.. +.+++.++|+|+|+++.++.+.... ..+ . .++++.+.+..++.++..++ +|
T Consensus 150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w 228 (245)
T PRK05450 150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPS 228 (245)
T ss_pred -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCC
Confidence 899999998731 2358999999999999988763211 111 1 11234333444699999986 89
Q ss_pred EecCCHHHHHHHHHHH
Q 020113 215 MDIGQPKDYITGLRLY 230 (331)
Q Consensus 215 ~~i~t~~d~~~a~~~~ 230 (331)
.++|||+||.+|++.+
T Consensus 229 ~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 229 IGVDTPEDLERVRALL 244 (245)
T ss_pred CCcCCHHHHHHHHHHh
Confidence 9999999999998653
|
|
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=180.59 Aligned_cols=218 Identities=28% Similarity=0.448 Sum_probs=150.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEe-ccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+| ..||||+.++|+|+|+|++++|.++|++++++|+ ++..+.++.+++++. +..++.+..
T Consensus 4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~iv~N~ 78 (239)
T COG1213 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKIVINS 78 (239)
T ss_pred eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEEEeCC
Confidence 7999999999999999 8999999999999999999999999999999999 777788888888742 134454444
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCC-----CCceEEEEcCCcCce
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEP-----SKYGVVVMEETTGKV 154 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~-----~~~~~v~~d~~~~~v 154 (331)
.++..+++.+++.+++.+.. .|+++.+|.++... +++...+.++...++..++ ..-..+. +++ |++
T Consensus 79 ~y~ktN~~~Sl~~akd~~~~----~fii~~sD~vye~~---~~e~l~~a~~~~li~d~~~~~~~~~ea~kv~-~e~-G~i 149 (239)
T COG1213 79 DYEKTNTGYSLLLAKDYMDG----RFILVMSDHVYEPS---ILERLLEAPGEGLIVDRRPRYVGVEEATKVK-DEG-GRI 149 (239)
T ss_pred CcccCCceeEEeeehhhhcC----cEEEEeCCEeecHH---HHHHHHhCcCCcEEEeccccccccCceeEEE-ecC-CEE
Confidence 55566779999999999976 79999999998754 3333333344445552221 1112222 344 777
Q ss_pred eEeeecCCCCCCCeEEEEEEEEChhhHhhcccCC-CCcccchHHHHHhcCcEEEEEe-----CceEEecCCHHHHHHHHH
Q 020113 155 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAAENKLFAMVL-----PGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~l~~l~~~~~i~~~~~-----~~~~~~i~t~~d~~~a~~ 228 (331)
..+..+-.+ -+-.++|++.++.+.+..+..-. ..-++ -..++...-.+.+-.. ...|+++|||||+.++.+
T Consensus 150 ~~igK~l~e--~~~e~iGi~~l~~~i~~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~ 226 (239)
T COG1213 150 VEIGKDLTE--YDGEDIGIFILSDSIFEDTYELLVERSEY-DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARK 226 (239)
T ss_pred ehhcCCccc--ccceeeeeEEechHHHHHHHHHHhhhhhH-HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHH
Confidence 776654332 24568999999999876552110 00011 1122222222222222 357999999999999988
Q ss_pred HHHhhhc
Q 020113 229 LYLDFLQ 235 (331)
Q Consensus 229 ~~l~~~~ 235 (331)
.+.....
T Consensus 227 ~~~~~~~ 233 (239)
T COG1213 227 YLVPNIK 233 (239)
T ss_pred HHHHHHH
Confidence 8776653
|
|
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=203.83 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=159.1
Q ss_pred CeEEEEeCCCCcccCCCCCC-CCCCCceeCC-cchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeE-EE
Q 020113 1 MKALILVGGFGTRLRPLTLS-VPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIK-IT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~-v~ 76 (331)
|.+||||||.|+||+|+|.. +||+|+|+.| +|||+|+++.|...++++++|+++... ..+.+.+..+ +.+ ..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence 78999999999999999986 8999999976 899999999999999999999987654 3445555542 222 24
Q ss_pred EeeCCcccCChHHHHHHHhhccC--CCCCcEEEEeCCeecc--ccHHHHHHHHh---hcCCceEEE---ecCCCCceEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLID--DSGEPFFVLNSDVISE--YPLKQMIEFHR---GRGGEASIM---VDEPSKYGVVV 146 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~--~~~~~~lv~~~D~i~~--~~l~~~l~~~~---~~~~~~~i~---~~~~~~~~~v~ 146 (331)
++.++.+.||+.++..+...+.. ..++.++|++||.+.. ..|.++++++. +.++.+++. ..+.++||++.
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~ 156 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR 156 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence 66778888999998887776632 1122589999998653 34888877653 334445555 34457999999
Q ss_pred EcCC-----cCceeEeeecCCCCC--------CCeEEEEEEEEChhhHh------------hccc-----CCC----Ccc
Q 020113 147 MEET-----TGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVLD------------RIEL-----KPT----SIE 192 (331)
Q Consensus 147 ~d~~-----~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l~------------~l~~-----~~~----~~~ 192 (331)
.+++ .++|..|.|||.... ..++++|+|+|+.+.+. .+.. ... .+.
T Consensus 157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T TIGR01479 157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD 236 (468)
T ss_pred eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence 9741 258999999997422 35899999999965432 2210 000 111
Q ss_pred cchHH---------H-HHhcCcEEEEEeCceEEecCCHHHHHHHHH
Q 020113 193 KEVFP---------E-IAAENKLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 193 ~~~l~---------~-l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
.+.++ . |.+..++.+.+.+..|.|+++++++.+...
T Consensus 237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 22333 1 233346888888888999999999988743
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=176.02 Aligned_cols=208 Identities=22% Similarity=0.272 Sum_probs=150.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.|||||+|.|+||+ +|+|+|++|+|||+|+++.+.++ ++++++|+++. +.+.+++.+ ++.++.+..+
T Consensus 4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~~~~~ 71 (238)
T PRK13368 4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVVMTSD 71 (238)
T ss_pred EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEEecCc
Confidence 48999999999994 49999999999999999999998 79999998864 456666654 3556655544
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCC-ceEEE---ec------CCCCceEEEEc
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGG-EASIM---VD------EPSKYGVVVME 148 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~-~~~i~---~~------~~~~~~~v~~d 148 (331)
....|++ .+..++..+.. +.|+++.||+ +...++..+++.+.+.+. .++++ .+ ++..+++ .++
T Consensus 72 ~~~~g~~-~~~~a~~~~~~---d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 146 (238)
T PRK13368 72 DHLSGTD-RLAEVMLKIEA---DIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD 146 (238)
T ss_pred cCCCccH-HHHHHHHhCCC---CEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence 4555665 56667776632 2899999997 557779999998876544 33333 11 2444443 445
Q ss_pred CCcCceeEeeecCCC------CCCCeEEEEEEEEChhhHhhcccC-CCC---ccc-chHHHHH-hcCcEEEEEeCceEEe
Q 020113 149 ETTGKVEKFVEKPKN------FVGNKINAGIYLLNPSVLDRIELK-PTS---IEK-EVFPEIA-AENKLFAMVLPGFWMD 216 (331)
Q Consensus 149 ~~~~~v~~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l~~~-~~~---~~~-~~l~~l~-~~~~i~~~~~~~~~~~ 216 (331)
++ +++..+.|+|.. +...+.++|+|+|+++++..+... ..+ ++. +++ .++ ...++.++..+++|.|
T Consensus 147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D 224 (238)
T PRK13368 147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG 224 (238)
T ss_pred CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence 55 889888865421 114588999999999999887431 111 222 455 444 4445999998899999
Q ss_pred cCCHHHHHHHHH
Q 020113 217 IGQPKDYITGLR 228 (331)
Q Consensus 217 i~t~~d~~~a~~ 228 (331)
++||+||..++.
T Consensus 225 I~t~~Dl~~a~~ 236 (238)
T PRK13368 225 VDTPEDLERVRA 236 (238)
T ss_pred CCCHHHHHHHHH
Confidence 999999999865
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=146.98 Aligned_cols=215 Identities=21% Similarity=0.329 Sum_probs=143.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+|+.|+|.+.||+|+++.|+|||+++++.|.++|+++|+||+++..+.++ |+++ ++++++.+.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkd---Ky~vtLvyN~k 76 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKD---KYDVTLVYNPK 76 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHH---hcCeEEEeCch
Confidence 8999999999999999999999999999999999999999999999999999999877655 5554 45788888777
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEeeec
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEK 160 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ek 160 (331)
.....+..+++.+++.+.+ .-++.+|.....+ +...+..+..=.++.....+.--....+.+ +++..+.-.
T Consensus 77 Y~~yNn~ySlyla~d~l~n-----tYiidsDnyl~kN---if~~~~~~S~Yfav~~~~~tnEw~l~~~~~-~ki~~v~Ig 147 (231)
T COG4750 77 YREYNNIYSLYLARDFLNN-----TYIIDSDNYLTKN---IFLTKESHSKYFAVYRSGKTNEWLLIYNSD-GKITRVDIG 147 (231)
T ss_pred HHhhhhHHHHHHHHHHhcc-----cEEeccchHhhhh---hhhcCcccceEEEEEecCCCceeEEEEcCC-CcEEEEEec
Confidence 7778899999999999964 5788999855432 222221111111222333333334455555 788776542
Q ss_pred CCCCCCCeEEEEEEEEChhhHhhc----ccCCCCcc------cchHHHHHhcCcEEEEEe-CceEEecCCHHHHHHHHHH
Q 020113 161 PKNFVGNKINAGIYLLNPSVLDRI----ELKPTSIE------KEVFPEIAAENKLFAMVL-PGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 161 ~~~~~~~~~~~Giy~~~~~~l~~l----~~~~~~~~------~~~l~~l~~~~~i~~~~~-~~~~~~i~t~~d~~~a~~~ 229 (331)
....++.+|+..|+...-+.+ +..-.+.+ .++...-+++-.+++-.. ++.-+.+++.++|.+....
T Consensus 148 ---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~ 224 (231)
T COG4750 148 ---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQK 224 (231)
T ss_pred ---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhh
Confidence 234688999999998765543 11001111 111111122112222222 3346788889998877665
Q ss_pred HH
Q 020113 230 YL 231 (331)
Q Consensus 230 ~l 231 (331)
++
T Consensus 225 ~l 226 (231)
T COG4750 225 FL 226 (231)
T ss_pred hc
Confidence 43
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=152.96 Aligned_cols=226 Identities=23% Similarity=0.313 Sum_probs=156.9
Q ss_pred CeEEEEeCCCCcccCCCCC-CCCCCCcee-CCcchHHHHHHHHHH-cCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILVGGFGTRLRPLTL-SVPKPLVDF-ANKPMILHQIEALKA-VGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~-~~pK~llpi-~g~pli~~~l~~l~~-~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (331)
|..||||||.|+|||||++ ..||+++++ ++++|++.+++.+.. .+.++++++++++. ..+.+.+.+........
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~-- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG-- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence 5789999999999999975 699999999 568999999999998 66899999998775 45566666532221112
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCC-cEEEEeCCeecccc--HHHHHHHHh---hcCCceEEE---ecCCCCceEEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGE-PFFVLNSDVISEYP--LKQMIEFHR---GRGGEASIM---VDEPSKYGVVVM 147 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~-~~lv~~~D~i~~~~--l~~~l~~~~---~~~~~~~i~---~~~~~~~~~v~~ 147 (331)
++.++....|+-++..+.-.+....++ -++|++.|.+.... +.+.++... +++.-+|+. ..+.++|||+..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~ 159 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET 159 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence 455677788998888776666544432 48899999965433 555555443 334445555 344578999998
Q ss_pred cC-----CcCceeEeeecCCCCC--------CCeEEEEEEEEChhhH-hhcccC--------------C--CCccc---c
Q 020113 148 EE-----TTGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVL-DRIELK--------------P--TSIEK---E 194 (331)
Q Consensus 148 d~-----~~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l-~~l~~~--------------~--~~~~~---~ 194 (331)
.+ +..+|..|.|||+..+ ..++|+|+|+|+...+ +.++.. . .++.+ +
T Consensus 160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e 239 (333)
T COG0836 160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE 239 (333)
T ss_pred CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence 55 2246899999997432 3689999999998764 322110 0 00000 0
Q ss_pred ---h-------HHHHHhcCcEEEEEeCceEEecCCHHHHHHHHH
Q 020113 195 ---V-------FPEIAAENKLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 195 ---~-------l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
. .-.|.+..++.+.+.+-.|-|+|+..++.+...
T Consensus 240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 0 112455567888888888999999998887744
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-19 Score=154.60 Aligned_cols=214 Identities=17% Similarity=0.167 Sum_probs=145.9
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.+||||+|.++||. +|+|++++|+|||+|+++.+.+++..+.++++ .+.+++.+++.+ ++.++....+.
T Consensus 49 ~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~-~~~e~I~~~~~~----~~v~vi~~~~~ 117 (293)
T PLN02917 49 VGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA-TDDERIAECCRG----FGADVIMTSES 117 (293)
T ss_pred EEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE-CChHHHHHHHHH----cCCEEEeCCcc
Confidence 58999999999994 49999999999999999999987643333333 456677777654 24444443344
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-------ecCCCCceEEE--EcCC
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-------VDEPSKYGVVV--MEET 150 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-------~~~~~~~~~v~--~d~~ 150 (331)
...|+... ..+++.++... +.+++++||. +....++.+++.+.+. .+..+. .+++.+|+.+. .|++
T Consensus 118 ~~~GT~~~-~~a~~~l~~~~-d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~ 194 (293)
T PLN02917 118 CRNGTERC-NEALKKLEKKY-DIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQ 194 (293)
T ss_pred cCCchHHH-HHHHHhccCCC-CEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCC
Confidence 45566554 67777775322 3899999999 4556699999988654 333322 36678899886 5766
Q ss_pred cCceeEee-----e-cCC---CCCCCeEEEEEEEEChhhHhhcc---cCCCCcccch--HHHHHhcC-cEEEEEeCceEE
Q 020113 151 TGKVEKFV-----E-KPK---NFVGNKINAGIYLLNPSVLDRIE---LKPTSIEKEV--FPEIAAEN-KLFAMVLPGFWM 215 (331)
Q Consensus 151 ~~~v~~~~-----e-k~~---~~~~~~~~~Giy~~~~~~l~~l~---~~~~~~~~~~--l~~l~~~~-~i~~~~~~~~~~ 215 (331)
|++..|. | |.. +....+.++|+|.|+.+.|..+. .++...++.+ +. ++++| ++.++..+....
T Consensus 195 -g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~ 272 (293)
T PLN02917 195 -GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAH 272 (293)
T ss_pred -CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH-HHhCCCceEEEEeCCCCC
Confidence 7755333 2 211 12235889999999999888662 2222223221 22 34455 587777766677
Q ss_pred ecCCHHHHHHHHHHHH
Q 020113 216 DIGQPKDYITGLRLYL 231 (331)
Q Consensus 216 ~i~t~~d~~~a~~~~l 231 (331)
.|||++|+.++++.+.
T Consensus 273 GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 273 GVDTPEDVEKIEALMR 288 (293)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=167.30 Aligned_cols=224 Identities=21% Similarity=0.246 Sum_probs=152.1
Q ss_pred CeEEEEeCCCCcccCCCCCC-CCCCCceeCC-cchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLS-VPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~ 77 (331)
|.+||||||.|+||||+|.. .||+|+|+.| +|||+++++.+...++.+.+++++... ..+.+.+..+.. ..-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i 82 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI 82 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence 57999999999999999987 7999999955 799999999999988877778887654 455556654210 11245
Q ss_pred eeCCcccCChHHHHHHHhhccCCC---CCcEEEEeCCeecccc--HHHHHHHHh---hcCCceEEE---ecCCCCceEEE
Q 020113 78 SQETEPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEYP--LKQMIEFHR---GRGGEASIM---VDEPSKYGVVV 146 (331)
Q Consensus 78 ~~~~~~~G~~~al~~~~~~~~~~~---~~~~lv~~~D~i~~~~--l~~~l~~~~---~~~~~~~i~---~~~~~~~~~v~ 146 (331)
+.++...+|+-++..+...+.... ++-++|+++|.+.... |.+.++... +.+.-+|+. ..+.++|||+.
T Consensus 83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~ 162 (478)
T PRK15460 83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR 162 (478)
T ss_pred EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence 667788899988877766664331 1268899999965432 444444332 224444544 34457899999
Q ss_pred EcCCc--------CceeEeeecCCCCC--------CCeEEEEEEEEChhhHh-hcccC---------------CC--Ccc
Q 020113 147 MEETT--------GKVEKFVEKPKNFV--------GNKINAGIYLLNPSVLD-RIELK---------------PT--SIE 192 (331)
Q Consensus 147 ~d~~~--------~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l~-~l~~~---------------~~--~~~ 192 (331)
.++.. .+|..|.|||+..+ ..++|+|+|+|+.+.+. .++.. .. .+.
T Consensus 163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~ 242 (478)
T PRK15460 163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI 242 (478)
T ss_pred eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence 87531 26899999997422 34899999999987652 22110 00 000
Q ss_pred ---cchHH----------HHHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 020113 193 ---KEVFP----------EIAAENKLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 193 ---~~~l~----------~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
.+.++ .|.+..++.+.+.+-.|.|+++..++.+..
T Consensus 243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 11111 134445688888887899999999887763
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=139.23 Aligned_cols=178 Identities=21% Similarity=0.320 Sum_probs=124.9
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.++|||||+|+||++ .||+|++++|+|||+|+++.+..+++++++++++++.+.++.++.+. ... + ..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~--~-~~ 69 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKD--Y-KN 69 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcE--E-Ee
Confidence 8999999999999976 69999999999999999999999999999999988877888887652 111 2 22
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
....|...++..+++.+... ++|++++||+ +....+..+++.+...+..+..+ +.....
T Consensus 70 ~~g~G~~~~l~~al~~~~~~--~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~---------------- 131 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELYFS--EPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPKEKY---------------- 131 (183)
T ss_pred cCCCCHHHHHHHHhhcccCC--CCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEeccccc----------------
Confidence 45667888898888865322 2899999999 45677999999887766554433 221110
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
.+|.-....++.+|+-++.+.--.+ ++ ++. +..+...+.++|++|+..+.
T Consensus 132 -~~~~~~~~~~~p~g~n~~~~~~~~~--------~~----------~~~-~~~~~~~~nvnt~~d~~~~~ 181 (183)
T TIGR00454 132 -PNPSIDFNGLVPAGVNIVSSKNGYQ--------EE----------EII-MVIDELIVNINTKDDLKLAE 181 (183)
T ss_pred -CCCccccccEeeeEEEEecCCCccc--------ce----------eee-eccccceEecCCHHHHHHhh
Confidence 0000011226789999998852111 01 110 22234688999999997764
|
At this time this gene appears to be present only in Archea |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-16 Score=135.28 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=134.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
+||+|+|.|+||. +|+|++++|+|||+|+++.+..+++++|+|+++. +.+.+.+.+ ++.++.......
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~~~~ 69 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQK----FGIEVCMTSKHH 69 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH----cCCEEEEeCCCC
Confidence 7999999999993 6999999999999999999999889999998863 345555554 344443322223
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCC-----CceEEEEcCCcC
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPS-----KYGVVVMEETTG 152 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~-----~~~~v~~d~~~~ 152 (331)
. |..+++..+...+...+.+.++++.||. +....++++++.+.+...+++.. ..++. +...+..|.+ |
T Consensus 70 ~-~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~-g 147 (238)
T TIGR00466 70 N-SGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQ-G 147 (238)
T ss_pred C-ChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCC-C
Confidence 3 3345565565554311222788999999 44556899999886544444433 22311 1223333555 6
Q ss_pred ceeEeeec--C---------CCCCC--CeEEEEEEEEChhhHhhcc-cCCCCccc----chHHHHHhcCcEEEEEeCce-
Q 020113 153 KVEKFVEK--P---------KNFVG--NKINAGIYLLNPSVLDRIE-LKPTSIEK----EVFPEIAAENKLFAMVLPGF- 213 (331)
Q Consensus 153 ~v~~~~ek--~---------~~~~~--~~~~~Giy~~~~~~l~~l~-~~~~~~~~----~~l~~l~~~~~i~~~~~~~~- 213 (331)
++..|... | +++.. .+...|+|.|+++.|+.+. .....+|. +.++.|...-++.+...++.
T Consensus 148 ~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~ 227 (238)
T TIGR00466 148 YALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVP 227 (238)
T ss_pred eEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCC
Confidence 66555432 1 11221 4679999999999999873 23333332 34666655567888777655
Q ss_pred EEecCCHHHH
Q 020113 214 WMDIGQPKDY 223 (331)
Q Consensus 214 ~~~i~t~~d~ 223 (331)
-..||||+|+
T Consensus 228 ~~~vdt~~d~ 237 (238)
T TIGR00466 228 SVGVDTQEDL 237 (238)
T ss_pred CCCCCChHHc
Confidence 4599999996
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=124.44 Aligned_cols=165 Identities=25% Similarity=0.431 Sum_probs=122.9
Q ss_pred CeEEEEeCCCCcccC-CCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLR-PLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~-plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.++|||+|+|+||+ + -|||++++|||||.|+++.+.+ .+++++++++++...++.++..+ ++++ +
T Consensus 1 m~~iiMAGGrGtRmg~~-----EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~v--i- 67 (177)
T COG2266 1 MMAIIMAGGRGTRMGRP-----EKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKV--I- 67 (177)
T ss_pred CceEEecCCcccccCCC-----cCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceE--E-
Confidence 789999999999998 5 6999999999999999999999 68999999999999999999874 3333 3
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
.....|....+..+++.+.. |+|++++|+.+ +..+..+++.+.....+.. .+... |+
T Consensus 68 ~tpG~GYv~Dl~~al~~l~~----P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~------------~~~~~-G~---- 126 (177)
T COG2266 68 ETPGEGYVEDLRFALESLGT----PILVVSADLPFLNPSIIDSVIDAAASVEVPIV------------TVVKA-GR---- 126 (177)
T ss_pred EcCCCChHHHHHHHHHhcCC----ceEEEecccccCCHHHHHHHHHHHhhccCcee------------Eeecc-Cc----
Confidence 34566888999999999965 89999999943 3347888887751111110 01011 21
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
..+|+-+|.+. + .++.+........++++|++||..|++.+-
T Consensus 127 -----------v~~Glni~~~~---~------------------~~~~~~i~~~~la~NVNT~eDl~~a~~ll~ 168 (177)
T COG2266 127 -----------VPVGLNIVGGK---Q------------------EEEILEIDNPELAVNVNTPEDLKKAERLLR 168 (177)
T ss_pred -----------cceeeEeecCC---C------------------cceeEEeeccceeEecCCHHHHHHHHHHHh
Confidence 45788888761 1 112334444567889999999999988753
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=134.54 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=135.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.|||||||.|+||+. ..||+|++++|+|||+|+++.+.++ ++++++|+++++. +.+...+.. . ..+.++.
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~~~ 72 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKIVA 72 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEEeC
Confidence 379999999999975 4699999999999999999999998 7999999998664 444444332 1 1122332
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
. ..+..++++.++..++ ..+.++++.||+ +....+..+++.+.+.+. +.+... ...++..++++ |.+..+
T Consensus 73 ~--~~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~-~~~~~~--~~~~v~~~~~~-g~~~~~ 144 (217)
T TIGR00453 73 G--GDTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKAGA-AILALP--VADTLKRVEAD-GFIVET 144 (217)
T ss_pred C--CchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCCc-EEEeEe--ccceEEEEcCC-Cceeec
Confidence 2 2245688999888872 123899999999 455668999998765432 122221 12234445554 667777
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhccc---CCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
.++.. -....+ .|.|+...+..+.. .......|....+...+ ++..++.+....+|+||+||..+..
T Consensus 145 ~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 145 VDREG---LWAAQT-PQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred CChHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 66421 123333 69999988866521 11111133344444444 4777777666779999999987754
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=134.05 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=135.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (331)
|.+||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++++|+++... +.+.+.+.. .. ..+.++
T Consensus 4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~ 76 (227)
T PRK00155 4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVV 76 (227)
T ss_pred eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEe
Confidence 3689999999999963 46999999999999999999999865 899999998665 333333221 11 122233
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCcee
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~ 155 (331)
. .+.+..+++..+++.+++. +.++++.||. +....++.+++.+.+.+...++. ..++ +.. ++++ |.+.
T Consensus 77 ~--~~~~~~~sv~~~l~~~~~~--d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~--~~~--v~~~-g~~~ 147 (227)
T PRK00155 77 A--GGAERQDSVLNGLQALPDD--DWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDT--IKR--SDDG-GGIV 147 (227)
T ss_pred C--CcchHHHHHHHHHHhCCCC--CEEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEecccc--EEE--EcCC-Ccee
Confidence 2 2235689999999888432 2789999999 44566999999887654222222 3222 222 2443 5555
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhccc---CCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.+.++.. -+..-+.|.|+.+.+..+.. +...+..+....+.+.+ ++..+..+..+++|+||+||..+...+.
T Consensus 148 ~~~~r~~----~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 148 DTPDRSG----LWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred ecCChHH----heeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 5443211 12333479999988876621 11111223334444444 4766666666889999999998876554
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=134.09 Aligned_cols=208 Identities=16% Similarity=0.220 Sum_probs=136.6
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.+||||||.|+||++ ..||+|+|++|+|||+|+++.+...+ ++++++++++........+..+. ....+.++..
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~--~~~~~~~~~~ 76 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYG--LSKVVKIVEG 76 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcc--cCCCeEEECC
Confidence 589999999999976 37999999999999999999999976 89999999876544443332211 1112333332
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
+.+...++..+++.+.....+.++++.||+ +....++.+++.+.+.+....+. ..+ +....|++ |.+..+
T Consensus 77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~----~~~~~~~~-g~~~~~ 149 (218)
T cd02516 77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTD----TIKRVDDD-GVVVET 149 (218)
T ss_pred --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccc----cEEEecCC-Cceeec
Confidence 235678999999988421223889999998 44556899999886554322222 211 12234555 778777
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcc---cCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIE---LKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYIT 225 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~---~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~ 225 (331)
.+..+ .....++ ++|+.+.+..+. .+...+..|....+.+.+ ++..++.+..-.+++||+||..
T Consensus 150 ~~r~~---~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 150 LDREK---LWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CChHH---hhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 76422 2345566 899998887662 111122234455555444 4666665555669999999853
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-16 Score=128.64 Aligned_cols=117 Identities=16% Similarity=0.307 Sum_probs=86.6
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
+||||||.|+||++ ||+|++++|+|||+|+++.+.+++++++++++++....+.+.+.. ..++.+... ...
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~---~~~v~~v~~-~~~ 72 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN---HSNITLVHN-PQY 72 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc---CCCeEEEEC-cCh
Confidence 79999999999975 899999999999999999999989999999998776544333321 223433222 223
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCC
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGG 130 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~ 130 (331)
..|...++..+++. ... .+++++++||+ +....++.+++.+.+...
T Consensus 73 ~~g~~~si~~~l~~-~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 73 AEGQSSSIKLGLEL-PVQ-SDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred hcCHHHHHHHHhcC-CCC-CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 35888999988872 211 23899999999 344568899988765444
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=138.26 Aligned_cols=203 Identities=14% Similarity=0.133 Sum_probs=136.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.+||||||.|+||+. ..||+|++++|+|||+|+++.|.+.+ +++|++++++......+.+.. ... .+.++.
T Consensus 6 v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~-~v~~v~ 78 (378)
T PRK09382 6 ISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIK-FVTLVT 78 (378)
T ss_pred ceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCC-eEEEeC
Confidence 3689999999999954 57999999999999999999999987 799999998665433322211 111 133332
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~ 156 (331)
...+..++++.+++.+.. +.+++..||. +....++.+++.+.+.++....+ +.+...|+...+|. ..+..
T Consensus 79 --gG~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR--~~l~~ 151 (378)
T PRK09382 79 --GGATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDR--EGLKL 151 (378)
T ss_pred --CCchHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCc--ccEEE
Confidence 234467899999998854 2899999998 34455888888776553333333 66776776555554 34433
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
+ ++|+.+ +.+.+.........+ .|..+.+...| ++..++-+..|..+++|+||..++..+.
T Consensus 152 ~-QTPQ~f------------~~~~l~~a~~~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 152 I-QTPQLS------------RTKTLKAAADGRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred E-ECCCCC------------CHHHHHHHHhCCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 3 667643 222222211111222 45556666666 5778888888999999999999987653
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=126.72 Aligned_cols=119 Identities=28% Similarity=0.429 Sum_probs=92.9
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+. ||+|++++|+|||+|+++.+.++++++|+|++++ +++..++.. ++.++... ...
T Consensus 1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~~~~v~~-~~~ 68 (160)
T PF12804_consen 1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YGIKVVVD-PEP 68 (160)
T ss_dssp EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TTSEEEE--STS
T ss_pred CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cCceEEEe-ccc
Confidence 69999999999964 9999999999999999999999999999999987 345544433 34555333 233
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
..|.+.+++.++..+... ++|++++||+. ....++.+++.+.+.+.++++.
T Consensus 69 ~~G~~~sl~~a~~~~~~~--~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 69 GQGPLASLLAALSQLPSS--EPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp SCSHHHHHHHHHHTSTTS--SEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred cCChHHHHHHHHHhcccC--CCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence 589999999999998422 29999999994 3456899999988766654433
|
... |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=128.02 Aligned_cols=119 Identities=22% Similarity=0.390 Sum_probs=91.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||++ ||+|++++|+|||+|+++.+...++++++|++++......+++.. .+..+ +..+
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~-~~~~ 70 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVV-VINP 70 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEE-EeCC
Confidence 5789999999999987 899999999999999999999998999999998766555444432 23332 2223
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCC
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGG 130 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~ 130 (331)
....|+..++..+++.+.. ..+.+++++||+ +....+..+++.+.+..+
T Consensus 71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3446899999999998863 123899999999 345568888887764443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=128.43 Aligned_cols=202 Identities=17% Similarity=0.209 Sum_probs=132.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
+.+||||+|.|+||. +|+|++++|+|||+|+++.+.+++ +++|+|+++ .+.+.+++.++ +..+.+..
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~----~~~~~~~~ 69 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY----GAEVPFLR 69 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh----CCCceeeC
Confidence 358999999999994 499999999999999999999987 788887663 34455555442 33222222
Q ss_pred C----CcccCChHHHHHHHhhccCC--CCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEe--cCCCCceEEEEcC
Q 020113 80 E----TEPLGTAGPLALARDKLIDD--SGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMV--DEPSKYGVVVMEE 149 (331)
Q Consensus 80 ~----~~~~G~~~al~~~~~~~~~~--~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~--~~~~~~~~v~~d~ 149 (331)
. ....|+.+++..+++.++.. ..+.++++.||+ +....+.++++.+.+.++++++.+ .....+.....++
T Consensus 70 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (223)
T cd02513 70 PAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDD 149 (223)
T ss_pred ChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeecc
Confidence 1 23347788999998887531 113899999999 556679999999887766655552 1222222222222
Q ss_pred CcC-ceeEeeecC-----CCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHH
Q 020113 150 TTG-KVEKFVEKP-----KNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKD 222 (331)
Q Consensus 150 ~~~-~v~~~~ek~-----~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d 222 (331)
+ + .+..+.++. +.+.....++|+|+++.+.+..... .+ .+++..++.+. ...||+|++|
T Consensus 150 ~-~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~--------~~-----g~~~~~~~~~~~~~~dI~~~~D 215 (223)
T cd02513 150 N-GLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS--------FF-----GGKTGPYEMPRERSIDIDTEED 215 (223)
T ss_pred C-CceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC--------cc-----CCCeEEEEeCccceeCCCCHHH
Confidence 1 2 122221211 2233457788999999997655211 01 34677777765 4889999999
Q ss_pred HHHHHH
Q 020113 223 YITGLR 228 (331)
Q Consensus 223 ~~~a~~ 228 (331)
+..+..
T Consensus 216 ~~~ae~ 221 (223)
T cd02513 216 FELAEA 221 (223)
T ss_pred HHHHHH
Confidence 988754
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=124.87 Aligned_cols=107 Identities=26% Similarity=0.379 Sum_probs=84.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. ||+|++++|+|||+|+++.+... +++++|++++.... ... .+..+.. ..
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~----~~~~~v~-~~ 65 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YAL----LGVPVIP-DE 65 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh----cCCcEee-CC
Confidence 6799999999999976 89999999999999999999988 89999999876543 111 2333322 22
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHH
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFH 125 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~ 125 (331)
....|...++..++..++.+ .+++++||+ +....+..+++.+
T Consensus 66 ~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 66 PPGKGPLAGILAALRAAPAD---WVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEeCCcCCCCHHHHHHHHHhh
Confidence 34568999999999988532 899999999 3445588888876
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=125.68 Aligned_cols=121 Identities=14% Similarity=0.231 Sum_probs=86.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHh-hhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF-EKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~v~~~~ 79 (331)
+.+||||||.|+||+. +|.|++++|+|||+|+++.+.+.++++++|+++++.+.+. .+.+. ....+..+...
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~- 73 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLADERIMLVCC- 73 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhcCCCeEEEEC-
Confidence 4689999999999976 8999999999999999999888889999999987654322 11111 11122333222
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhc
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGR 128 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~ 128 (331)
+....|.+.+++.+++.+.....+.+++++||+ +....+..+++.+.+.
T Consensus 74 ~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 74 RDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRR 124 (190)
T ss_pred CChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhC
Confidence 233458889999999987432233899999999 3445578888876543
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-15 Score=118.57 Aligned_cols=185 Identities=17% Similarity=0.297 Sum_probs=127.7
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.+||||||+|+||+. +|.|+|+.|+|+++++++...+++++++++++++.. +..+.... ..+..+.+. +
T Consensus 7 ~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~n-p 76 (199)
T COG2068 7 AAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVN-P 76 (199)
T ss_pred EEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeC-c
Confidence 589999999999985 999999999999999999999999999999999863 22222222 123344333 2
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
+-..|.+.|+..++.....+.+ .+++..||+ +...++..+++.+...+ . .+.... . |
T Consensus 77 d~~~Gls~Sl~ag~~a~~~~~~-~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~-~v~p~~---------~---g------ 135 (199)
T COG2068 77 DYAQGLSTSLKAGLRAADAEGD-GVVLMLGDMPQVTPATVRRLIAAFRARG-A-AVRPVY---------G---G------ 135 (199)
T ss_pred chhhhHhHHHHHHHHhcccCCC-eEEEEeCCCCCCCHHHHHHHHHhccccC-c-eeeeec---------c---C------
Confidence 3456999999999999987653 899999999 56778999999887652 1 111000 0 1
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcE--EEEEe-CceEEecCCHHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKL--FAMVL-PGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i--~~~~~-~~~~~~i~t~~d~~~a~~~~ 230 (331)
+. .+-.+|++++|..+..-.-+ .. .+.++.+..+ ...+. .+...|||||+||.+++..+
T Consensus 136 -~r---------G~Pv~~~~~~~~~l~~l~GD--~G-~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~ 197 (199)
T COG2068 136 -AR---------GHPVLLSKDLFPALARLSGD--VG-ARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL 197 (199)
T ss_pred -Cc---------CCceeechhHHHHHhhcCCc--hh-HHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence 00 22267788877666321111 11 3344444443 33334 66799999999999998765
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=122.84 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=81.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+. .++++++|+++.+.+.+ .. .+..+.....
T Consensus 4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~----~~~~~v~~~~ 70 (193)
T PRK00317 4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AA----FGLPVIPDSL 70 (193)
T ss_pred ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh----cCCcEEeCCC
Confidence 6799999999999953 4899999999999999999998 67999999987653322 12 1333321111
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhh
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRG 127 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~ 127 (331)
....|...+++.+++..+.+ .+++++||+ + ....+..+++.+.+
T Consensus 71 ~~~~g~~~~i~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 71 ADFPGPLAGILAGLKQARTE---WVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 22368889999998865432 899999999 3 34558888887643
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=124.57 Aligned_cols=211 Identities=11% Similarity=0.200 Sum_probs=133.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.+||||||.|+||+. +.||+|++++|+|||+|+++.+..++ +++++|+++... ..+++++.+++.. ...+.++.
T Consensus 4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 79 (230)
T PRK13385 4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVVK 79 (230)
T ss_pred EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEcC
Confidence 589999999999974 56999999999999999999999864 899999987643 3344444442211 01232332
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~ 156 (331)
...+..+++..++..+... +.++++.||. +....++++++.+.+.++..++. +.+ .+...+ + +.+..
T Consensus 80 --~g~~r~~sv~~gl~~~~~~--d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~d----ti~~~~-~-~~~~~ 149 (230)
T PRK13385 80 --GGTERQESVAAGLDRIGNE--DVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKD----TVKRVK-D-KQVIE 149 (230)
T ss_pred --CCchHHHHHHHHHHhccCC--CeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccc----eEEEEc-C-CeeEe
Confidence 2234458999999887532 2678889999 34455899999887665443333 222 122222 2 33433
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhc-cc---CCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRI-EL---KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
..++. .-+..-+.|.|+.+.+... .. ....+ .+....+...| ++..++-+.....|+||+|+..|...+.
T Consensus 150 ~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~-td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 150 TVDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLG-TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred ccCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 33321 1222334688888877654 21 11222 33334444444 4777776667889999999999976653
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=120.57 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=83.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+.. .+++++|++++.... +... ..+..+.....
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~ 69 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL 69 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence 5789999999999963 48999999999999999999986 489999988655322 1111 12333322222
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhh
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRG 127 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~ 127 (331)
....|+..+++.+++.+..+ .+++++||+ + ....++.+++.+.+
T Consensus 70 ~~~~g~~~si~~al~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 70 ADFPGPLAGILAGLRWAGTD---WVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 34579999999999988432 899999999 3 44457888887654
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=127.61 Aligned_cols=124 Identities=19% Similarity=0.347 Sum_probs=85.6
Q ss_pred chHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc---------------ccCCccCCCceEecceEEcCCc
Q 020113 194 EVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK---------------NSSSKLATGSNIIGNVLVHEGA 258 (331)
Q Consensus 194 ~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~---------------~~~~~i~~~~~i~~~~~i~~~~ 258 (331)
+.++.|+.++ ++..++||.|+ ++|+++++.+|..... .....|++++.|.++++|++++
T Consensus 32 ~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~ 105 (231)
T TIGR03532 32 ESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNA 105 (231)
T ss_pred hheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCC
Confidence 5666666555 78888999999 9999999999977421 1223445555554444444444
Q ss_pred ------------EECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE-cCcEEcc
Q 020113 259 ------------KIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS-NGAVVLP 316 (331)
Q Consensus 259 ------------~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i-~~~~v~~ 316 (331)
.||++|.|+ .++.|. +++||++|.||.+++|.+ +++|+++|.||.++++ .++.|++
T Consensus 106 ~I~~~~~I~~~~~IG~~~~I~--~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~ 183 (231)
T TIGR03532 106 VIMMGAVINIGAEIGEGTMID--MNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGK 183 (231)
T ss_pred EEecCcccCCCeEECCCCEEc--cccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECC
Confidence 445555555 556664 788888888888888874 4788888888888887 4777777
Q ss_pred CeEEccCcc
Q 020113 317 HKEIKSSIV 325 (331)
Q Consensus 317 ~~~i~~~~~ 325 (331)
+++|+++..
T Consensus 184 ~~~Igagsv 192 (231)
T TIGR03532 184 GAVVAAGAI 192 (231)
T ss_pred CCEECCCCE
Confidence 777775543
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.9e-14 Score=116.15 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=81.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee-
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ- 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~- 79 (331)
+.+||||||.|+||+. +|+|++++|+|||+|+++.+... +++++|++++. +....... .+ +.++.
T Consensus 8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~--~~~i~~ 73 (200)
T PRK02726 8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PG--CHWLRE 73 (200)
T ss_pred ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CC--CeEecC
Confidence 4689999999999965 89999999999999999999865 68998887632 22222111 12 33333
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhh
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRG 127 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~ 127 (331)
.....|...+++.++..++.+ .++|++||+ +....+..+++.+.+
T Consensus 74 ~~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 74 PPPSQGPLVAFAQGLPQIKTE---WVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCCChHHHHHHHHHhCCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 233468999999999988642 899999999 344558888887643
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-13 Score=112.27 Aligned_cols=200 Identities=21% Similarity=0.228 Sum_probs=134.5
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC-
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE- 80 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~- 80 (331)
|||+|+|.++||. +|.+++++|+|||.|+++.+.+++ +++|+|.++ .+++.+...+ ++..+.+...
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~----~g~~v~~~r~~ 69 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS----YGASVPFLRPK 69 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH----cCCEeEEeChH
Confidence 7999999999993 599999999999999999999987 677777554 2345555443 3555544321
Q ss_pred ---CcccCChHHHHHHHhhccC-CCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEEecC---CCCceEEEEcCCc
Q 020113 81 ---TEPLGTAGPLALARDKLID-DSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIMVDE---PSKYGVVVMEETT 151 (331)
Q Consensus 81 ---~~~~G~~~al~~~~~~~~~-~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~~~~---~~~~~~v~~d~~~ 151 (331)
....|+.+++..+++.++. ...+.++++.+|.. ...+++.+++.+.+.+++..+.+.+ +..+. ...+++
T Consensus 70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~-~~~~~~- 147 (222)
T TIGR03584 70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRA-FKLKEN- 147 (222)
T ss_pred HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHh-eEECCC-
Confidence 2356788999999988743 11237999999993 4467999999998866666555222 22222 233444
Q ss_pred CceeEeeecC-----C-CCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 020113 152 GKVEKFVEKP-----K-NFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYI 224 (331)
Q Consensus 152 ~~v~~~~ek~-----~-~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d~~ 224 (331)
|.+..+.... + -+.....+.++|+++++.+..-. .++ .++...|+++. ...|||+++|+.
T Consensus 148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~--------~~~-----~~~~~~~~m~~~~~iDID~~~D~~ 214 (222)
T TIGR03584 148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG--------PIF-----SPHSIPIVLPRHLVQDIDTLEDWE 214 (222)
T ss_pred CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC--------Ccc-----CCCcEEEEeCccceeCCCCHHHHH
Confidence 5554443211 1 11223568999999999765411 011 34677787765 488999999999
Q ss_pred HHHHH
Q 020113 225 TGLRL 229 (331)
Q Consensus 225 ~a~~~ 229 (331)
.|...
T Consensus 215 ~ae~l 219 (222)
T TIGR03584 215 RAELL 219 (222)
T ss_pred HHHHH
Confidence 88654
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.4e-13 Score=114.51 Aligned_cols=208 Identities=13% Similarity=0.202 Sum_probs=123.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (331)
+.+||||||.|+||+. ..||+|++++|+|+|+|+++.+... ++++++++++++. +.++..+.+ ++..+.++
T Consensus 25 i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~i~~v 97 (252)
T PLN02728 25 VSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVPLKFA 97 (252)
T ss_pred eEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCceEEc
Confidence 3589999999999974 5799999999999999999999984 7999999998764 333444433 23334433
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCC--e--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCc
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--V--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D--~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~ 153 (331)
....+..++++.++..+..+ ..+|+.+| . +....+..+++...+.++..+.+ +.+ .+..++++ +.
T Consensus 98 --~gg~~r~~SV~~gl~~l~~~---~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~d----tik~v~~~-~~ 167 (252)
T PLN02728 98 --LPGKERQDSVFNGLQEVDAN---SELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKA----TIKEANSD-SF 167 (252)
T ss_pred --CCCCchHHHHHHHHHhccCC---CCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchh----hEEEecCC-Cc
Confidence 23345678899999988543 34566666 4 34455788998877665433333 211 11122222 33
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhc-c---cCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-E---LKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~---~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
+....+... -+.----..|+.+.+... + .+... ..|....+...| ++...+-+..-+-|.||+|+..+..
T Consensus 168 v~~t~~R~~----l~~~QTPQ~F~~~~l~~a~~~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~ 242 (252)
T PLN02728 168 VVKTLDRKR----LWEMQTPQVIKPELLRRGFELVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAER 242 (252)
T ss_pred eeeccChHH----eEEEeCCccchHHHHHHHHHHHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHH
Confidence 332211100 001111145666655443 1 11111 133333444444 4555444445668999999998876
Q ss_pred HH
Q 020113 229 LY 230 (331)
Q Consensus 229 ~~ 230 (331)
.+
T Consensus 243 ~l 244 (252)
T PLN02728 243 IL 244 (252)
T ss_pred HH
Confidence 54
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=125.11 Aligned_cols=186 Identities=16% Similarity=0.248 Sum_probs=116.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+... +++++++++...+.+.+++.. ..+.....
T Consensus 6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~~~~------~~~i~d~~ 74 (366)
T PRK14489 6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDLFPG------LPVYPDIL 74 (366)
T ss_pred ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhhccC------CcEEecCC
Confidence 4689999999999951 489999999999999999999864 899998776554444333221 22221122
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
....|...+++.+++.+..+ .+++++||+ +....+..+++.+.+.++++.+.. .. ++.
T Consensus 75 ~g~~G~~~si~~gl~~~~~~---~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~~-----------~g--~~g---- 134 (366)
T PRK14489 75 PGFQGPLSGILAGLEHADSE---YLFVVACDTPFLPENLVKRLSKALAIEGADIAVPH-----------DG--ERA---- 134 (366)
T ss_pred CCCCChHHHHHHHHHhcCCC---cEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEEe-----------cC--CCc----
Confidence 22358889999999987532 799999998 344557888887655444321110 10 110
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeC---ceEEecCCHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP---GFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~---~~~~~i~t~~d~~~a~~~ 229 (331)
.| -.| +|+++.+..+........+.+..++. ...+....++ ..+.++|||+||.++...
T Consensus 135 ----~P-----l~a--iy~~~~~~~l~~~l~~G~~~l~~~l~-~~~~~~v~~~~~~~~~~nINTpeDl~~l~~~ 196 (366)
T PRK14489 135 ----HP-----LFA--LYHRSCLPALRRYLAEGERRLFDFFQ-RQRVRYVDLSTQKDAFFNVNTPEDLEQLRAI 196 (366)
T ss_pred ----ee-----eEE--EEcHHHHHHHHHHHHhCCccHHHHHH-hCCcEEEeccCCccccccCCCHHHHHHHhhh
Confidence 01 112 45777766653322222333444332 2334444443 347899999999877554
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-14 Score=99.82 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=74.5
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
|++++.|++++.|. ++.|+++|.|+ +++.|++|+++++|.||+++.|.+ |+|++++.|++++.+++|++++++.|+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~--~~~~i~~s~i~~~~~ig~~~~l~~-svi~~~~~i~~~~~v~~~ii~~~~~i~ 77 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIG--KRVKITNCVIMDNVTIEDGCTLEN-CIIGNGAVIGEKCKLKDCLVGSGYRVE 77 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEEC--CCCEEeCcEEeCCCEECCCCEEec-cEEeCCCEECCCCEEccCEECCCcEeC
Confidence 67889999999997 79999999999 889999999999999999999988 999999999999999999999999999
Q ss_pred cCc
Q 020113 322 SSI 324 (331)
Q Consensus 322 ~~~ 324 (331)
++.
T Consensus 78 ~~~ 80 (81)
T cd04652 78 AGT 80 (81)
T ss_pred CCC
Confidence 864
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-12 Score=105.97 Aligned_cols=214 Identities=22% Similarity=0.289 Sum_probs=151.7
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
+||+|.=.+|||.. |||-.|+|+|||.|+.++..++|.++++|.+. .+.+.+.+.++ |.++.......
T Consensus 6 viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~~----G~~avmT~~~h 73 (247)
T COG1212 6 VIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATD--DERIAEAVQAF----GGEAVMTSKDH 73 (247)
T ss_pred EEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHh----CCEEEecCCCC
Confidence 67888878888855 99999999999999999999999999999885 45677788774 55666666666
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCce-EEE--ec------CCCCceEEEEcCCc
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEA-SIM--VD------EPSKYGVVVMEETT 151 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~-~i~--~~------~~~~~~~v~~d~~~ 151 (331)
+.|+ +.+..+...+.....+.++=+-||.-+ ...+.++++...+..+++ |+. .. +|. --.+..|.+
T Consensus 74 ~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN-~VKvV~d~~- 150 (247)
T COG1212 74 QSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPN-VVKVVLDKE- 150 (247)
T ss_pred CCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCC-cEEEEEcCC-
Confidence 6666 778888888754433366668999943 345888888887765554 444 11 222 233445666
Q ss_pred CceeEeeecCC--C-----CCCCeEEEEEEEEChhhHhhc-ccCCCCccc----chHHHHHhcCcEEEEEeCceE-EecC
Q 020113 152 GKVEKFVEKPK--N-----FVGNKINAGIYLLNPSVLDRI-ELKPTSIEK----EVFPEIAAENKLFAMVLPGFW-MDIG 218 (331)
Q Consensus 152 ~~v~~~~ek~~--~-----~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~----~~l~~l~~~~~i~~~~~~~~~-~~i~ 218 (331)
|+.+.|...|- . ...-+.-.|+|.|+..+++.+ .-.+..+|+ +-|+.|-...+|.+....... ..+|
T Consensus 151 g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD 230 (247)
T COG1212 151 GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD 230 (247)
T ss_pred CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCC
Confidence 88888865421 1 123467899999999999877 334444432 235555555678888887554 8999
Q ss_pred CHHHHHHHHHHHH
Q 020113 219 QPKDYITGLRLYL 231 (331)
Q Consensus 219 t~~d~~~a~~~~l 231 (331)
||+||-++.+.+.
T Consensus 231 T~EDLe~v~~~~~ 243 (247)
T COG1212 231 TPEDLERVRKILS 243 (247)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999876654
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=112.51 Aligned_cols=186 Identities=18% Similarity=0.240 Sum_probs=113.1
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh--HHHHHHHHHhhhccCeEEEEee
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|||||+|.|+|| + +|+|++++|+||++|+++.+..++ +++++|+++... +.+.+++.. .++.+ +.
T Consensus 2 aiIlA~G~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~--v~ 69 (233)
T cd02518 2 AIIQARMGSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKV--FR 69 (233)
T ss_pred EEEeeCCCCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeE--EE
Confidence 799999999999 3 499999999999999999999987 899999998664 455555543 23333 22
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
.+. .+.......++.... .+.++++.||+ +....++++++.+.+.+.+.+.. . +
T Consensus 70 ~~~-~~~l~~~~~~~~~~~---~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~------------~---~----- 125 (233)
T cd02518 70 GSE-EDVLGRYYQAAEEYN---ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSN------------T---L----- 125 (233)
T ss_pred CCc-hhHHHHHHHHHHHcC---CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEec------------C---C-----
Confidence 121 122222232322222 22899999999 44556899999887655432221 0 0
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcc-cCCCCcccchHHHHHhcCc--EEEEEeCc-------eEEecCCHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIE-LKPTSIEKEVFPEIAAENK--LFAMVLPG-------FWMDIGQPKDYITGL 227 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~~~l~~l~~~~~--i~~~~~~~-------~~~~i~t~~d~~~a~ 227 (331)
+ .+..+..+..+|+...+..+. .....+.+..+..++++.. +....++. ..+|+|||+||..+.
T Consensus 126 --~----~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~ 199 (233)
T cd02518 126 --P----RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIK 199 (233)
T ss_pred --C----CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHH
Confidence 0 011233445678777776552 2223333444322333322 33322322 278999999997776
Q ss_pred HHH
Q 020113 228 RLY 230 (331)
Q Consensus 228 ~~~ 230 (331)
..+
T Consensus 200 ~~~ 202 (233)
T cd02518 200 EIY 202 (233)
T ss_pred HHH
Confidence 543
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-13 Score=109.03 Aligned_cols=179 Identities=18% Similarity=0.283 Sum_probs=110.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||+|.|+|| . +|+|++++|+||++|+++.|....- .++|....+.+. +.. .+.++ +..
T Consensus 5 ~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~-----~g~~v--v~D 67 (192)
T COG0746 5 MTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAE-----FGLPV--VPD 67 (192)
T ss_pred ceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhc-----cCCce--eec
Confidence 67999999999999 5 8999999999999999999999854 555555544331 221 23334 333
Q ss_pred Cccc-CChHHHHHHHhhccCCCCCcEEEEeCCe-ecc-ccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPL-GTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~-G~~~al~~~~~~~~~~~~~~~lv~~~D~-i~~-~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+. |....++.++.....+ .+++++||+ +.. .-+..+++...+.++. .+. .-++ |++.-
T Consensus 68 ~~~~~GPL~Gi~~al~~~~~~---~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~-~~~-----------~~~~-g~~~P- 130 (192)
T COG0746 68 ELPGFGPLAGILAALRHFGTE---WVLVLPCDMPFIPPELVERLLSAFKQTGAA-IVP-----------AHDD-GRLEP- 130 (192)
T ss_pred CCCCCCCHHHHHHHHHhCCCC---eEEEEecCCCCCCHHHHHHHHHhhcccCCc-EEE-----------eCCC-Cceee-
Confidence 3333 9999999999999854 899999999 333 3366777766544421 111 1111 33211
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEe--Cc--eEEecCCHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVL--PG--FWMDIGQPKDYITGLR 228 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~--~~--~~~~i~t~~d~~~a~~ 228 (331)
-.++| +..+...+..-....++ -+..+++......+.+ .. .|..++||+||.....
T Consensus 131 ------------l~aly--~~~l~~~l~~~l~~g~~-~~~~~l~~~~~~~v~~~~~~~~~F~NiNtpeDL~~~~~ 190 (192)
T COG0746 131 ------------LFALY--HRALLPALEEYLAKGER-RLSALLERLGTEYVEFEDLEEDSFFNINTPEDLARARE 190 (192)
T ss_pred ------------EEEEe--hHHHHHHHHHHHHhCCc-cHHHHHHHCCcEEEecCcCCcccccccCCHHHHHHHhc
Confidence 23444 66666655321112221 2222333333333333 22 5889999999987653
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=108.37 Aligned_cols=178 Identities=16% Similarity=0.240 Sum_probs=105.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCC-cchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g-~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
+.+||||||.|+||+. +|+|++++| +|||+|+++.+... +++++|++++. .. . ....+..-.
T Consensus 9 i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~-----~~~~~v~d~ 71 (196)
T PRK00560 9 IPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK--KF----E-----FNAPFLLEK 71 (196)
T ss_pred ceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch--hc----c-----cCCcEEecC
Confidence 4689999999999965 899999999 99999999999887 88999888751 11 1 112221111
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccc-cHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEY-PLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~-~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
.....|....+..++...+.+ .++|++||+. .+. .++.++. +.+.. .+....+ ++.
T Consensus 72 ~~~~~gpl~gi~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~---~~~~~------------~~~~~~~-~~~--- 129 (196)
T PRK00560 72 ESDLFSPLFGIINAFLTLQTP---EIFFISVDTPFVSFESIKKLCG---KENFS------------VTYAKSP-TKE--- 129 (196)
T ss_pred CCCCCCcHHHHHHHHHhcCCC---eEEEEecCcCcCCHHHHHHHHh---cCCCC------------EEEEccC-Cce---
Confidence 223456666777666655432 8999999993 343 3556532 11111 1111111 110
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeC--ceEEecCCHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP--GFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~--~~~~~i~t~~d~~~a~~~~ 230 (331)
.| -..+|+++.+..+..-..+..+.+ ..+++...+....++ +.|.|+|||+||.++.+.+
T Consensus 130 -----~P-------l~al~~~~~~~~l~~~l~~~~~~~-~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~ 191 (196)
T PRK00560 130 -----HY-------LISLWHQSLLNALIYALKTQNYRL-SDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQIL 191 (196)
T ss_pred -----ee-------eEEEEcHHHHHHHHHHHHhCCccH-HHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHH
Confidence 01 115788887776632111111112 223333344444443 3588999999998875543
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=95.11 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=72.1
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC-cEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG-AVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i 320 (331)
+++++.|++++.|++ +.||++|.|+ +++.|++|+|+++|.|++++.|.+ |+|++++.|++++.+.+ +++++++++
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig--~~~~i~~svi~~~~~i~~~~~i~~-svv~~~~~i~~~~~i~~~~~ig~~~~i 77 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIG--DGVTITNSILMDNVTIGANSVIVD-SIIGDNAVIGENVRVVNLCIIGDDVVV 77 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEEC--CCCEEeCCEEeCCCEECCCCEEEC-CEECCCCEECCCCEEcCCeEECCCeEE
Confidence 678999999999986 9999999999 889999999999999999999998 99999999999999987 999999988
Q ss_pred cc
Q 020113 321 KS 322 (331)
Q Consensus 321 ~~ 322 (331)
++
T Consensus 78 ~~ 79 (79)
T cd03356 78 ED 79 (79)
T ss_pred Cc
Confidence 74
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=107.83 Aligned_cols=208 Identities=17% Similarity=0.233 Sum_probs=120.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (331)
+.|||+|||.|+||+. ..||.+++++|+|+|.|+++.|.+. .+++|++++.++. +.+++.+.+ .. +.++
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~--v~iv 71 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KK--VKIV 71 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TT--EEEE
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CC--EEEe
Confidence 3589999999999986 7899999999999999999999985 4899999997765 444444443 22 3333
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhh-cCCceEEE-ecCCCCceEEEEcCCcCce
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRG-RGGEASIM-VDEPSKYGVVVMEETTGKV 154 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~-~~~~~~i~-~~~~~~~~~v~~d~~~~~v 154 (331)
. ....-.+|+++++..+.... +.+++.-+=- +....+.++++...+ .++....+ +.+ .+...+++ +.+
T Consensus 72 ~--GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~D----Tik~v~~~-~~v 143 (221)
T PF01128_consen 72 E--GGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTD----TIKRVDDD-GFV 143 (221)
T ss_dssp E----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SS----EEEEESTT-SBE
T ss_pred c--CChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccc----cEEEEecC-Ccc
Confidence 2 23345689999999987654 2666665554 334458889988776 44433333 222 23344444 555
Q ss_pred eEeeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCcccchHHHHHh-cCcEEEEEeCceEEecCCHHHHHHHHHH
Q 020113 155 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSIEKEVFPEIAA-ENKLFAMVLPGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~d~~~a~~~ 229 (331)
.+..+... -+.----..|+.+.+...-.. ...+ .|--..+.. ..++...+-+..=+=+.+|+|+..|...
T Consensus 144 ~~tldR~~----l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~-tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~l 218 (221)
T PF01128_consen 144 TETLDRSK----LWAVQTPQAFRFELLLEAYEKADEEGFEF-TDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEAL 218 (221)
T ss_dssp EEEETGGG----EEEEEEEEEEEHHHHHHHHHTHHHHTHHH-SSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHH
T ss_pred cccCCHHH----eeeecCCCeecHHHHHHHHHHHHhcCCCc-cCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHH
Confidence 55443211 111222357777776654111 1112 121122222 3346555544345578999999988665
Q ss_pred H
Q 020113 230 Y 230 (331)
Q Consensus 230 ~ 230 (331)
+
T Consensus 219 l 219 (221)
T PF01128_consen 219 L 219 (221)
T ss_dssp H
T ss_pred h
Confidence 4
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=94.64 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=71.9
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC-cEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG-AVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i 320 (331)
+++++.|+++++|+++++|+++|.|+ +++.|.+|++++++.|++++.|.+ |++++++.|++++.+.+ +++++++++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig--~~~~i~~sii~~~~~i~~~~~i~~-sii~~~~~v~~~~~~~~~~~ig~~~~i 78 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIG--DGVRLQRCVILSNSTVRDHSWVKS-SIVGWNSTVGRWTRLENVTVLGDDVTI 78 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEEC--CCcEEeeeEEcCCCEECCCCEEeC-CEEeCCCEECCCcEEecCEEECCceEE
Confidence 57888999999999999999999999 889999999999999999999999 99999999999999976 888888887
Q ss_pred cc
Q 020113 321 KS 322 (331)
Q Consensus 321 ~~ 322 (331)
++
T Consensus 79 ~~ 80 (80)
T cd05824 79 KD 80 (80)
T ss_pred CC
Confidence 63
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-11 Score=101.88 Aligned_cols=206 Identities=16% Similarity=0.251 Sum_probs=124.8
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
-+||||||.|+||+. ..||.+++++|+||++|+++.|.... +++|+|++.++. +.+.++.. ...+.++.++.
T Consensus 6 ~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~ 79 (230)
T COG1211 6 SAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVK 79 (230)
T ss_pred EEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCeEEEec
Confidence 589999999999998 89999999999999999999999876 899999998744 44444442 12233454443
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~ 156 (331)
....-.++++.++..+....++.+|+.-+== +....++++++...+.++-.+++ +.+ .....+.+ +.+.+
T Consensus 80 --GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~D----Tik~~~~~-~~i~~ 152 (230)
T COG1211 80 --GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTD----TLKRVDAD-GNIVE 152 (230)
T ss_pred --CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccC----cEEEecCC-CCeee
Confidence 3445678999999999742222444444333 33445888886554444443443 332 22233333 45554
Q ss_pred eeecC-----CCCCCCeEEEEEEEEChhhHhhccc----CCCCcccchHHHHHh-cCcEEEEEeCceEEecCCHHHHHHH
Q 020113 157 FVEKP-----KNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAA-ENKLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 157 ~~ek~-----~~~~~~~~~~Giy~~~~~~l~~l~~----~~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
..+.. ++| ..|+.+.|..... ...++-.| -..+.. ..++....=+-+-+-+.+|+|+..|
T Consensus 153 t~~R~~l~~~QTP---------Q~F~~~~L~~a~~~a~~~~~~~tDd-as~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a 222 (230)
T COG1211 153 TVDRSGLWAAQTP---------QAFRLELLKQALARAFAEGREITDD-ASAIEKAGGPVSLVEGSADNFKITTPEDLEIA 222 (230)
T ss_pred ccChhhhhhhhCC---------ccccHHHHHHHHHHHHhcCCCcCCH-HHHHHHcCCCeEEEecCcceeEecCHHHHHHH
Confidence 43321 123 4566666654311 11222222 111222 2356545444456789999999988
Q ss_pred HHHH
Q 020113 227 LRLY 230 (331)
Q Consensus 227 ~~~~ 230 (331)
...+
T Consensus 223 ~~il 226 (230)
T COG1211 223 EAIL 226 (230)
T ss_pred HHHh
Confidence 6643
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-13 Score=122.73 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=72.0
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i 320 (331)
||.++.|+.++.|. |++||++|.|| ++++|++|+|+++|+||.||.|++ |+|+++++|+.|+.+ .+|+++.++++
T Consensus 336 ig~gT~Ig~g~~I~-NSVIG~~c~Ig--sN~~I~~S~iw~~v~Igdnc~I~~-aii~d~v~i~~~~~l~~g~vl~~~VVv 411 (673)
T KOG1461|consen 336 IGAGTKIGSGSKIS-NSVIGANCRIG--SNVRIKNSFIWNNVTIGDNCRIDH-AIICDDVKIGEGAILKPGSVLGFGVVV 411 (673)
T ss_pred ecccccccCCCeee-cceecCCCEec--CceEEeeeeeecCcEECCCceEee-eEeecCcEeCCCcccCCCcEEeeeeEe
Confidence 44455555555553 89999999999 999999999999999999999999 999999999999999 58999999999
Q ss_pred ccCccCC
Q 020113 321 KSSIVNP 327 (331)
Q Consensus 321 ~~~~~~~ 327 (331)
+++...+
T Consensus 412 ~~~~~l~ 418 (673)
T KOG1461|consen 412 GRNFVLP 418 (673)
T ss_pred CCCcccc
Confidence 9887665
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.6e-12 Score=113.76 Aligned_cols=107 Identities=21% Similarity=0.379 Sum_probs=77.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||+|+||+. +|+|++++|+|||+|+++.+... +++++|+++.... . .+.. .++.+.. ..
T Consensus 175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~--~-~~~~----~~v~~i~-d~ 240 (369)
T PRK14490 175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQA--E-QYRS----FGIPLIT-DS 240 (369)
T ss_pred ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchh--h-HHhh----cCCcEEe-CC
Confidence 3689999999999965 89999999999999999999875 7888887765422 1 1121 2344432 22
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHH
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEF 124 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~ 124 (331)
....|...++..++...+.+ .+++++||+ +....++.+++.
T Consensus 241 ~~~~Gpl~gi~~al~~~~~~---~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 241 YLDIGPLGGLLSAQRHHPDA---AWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCCCCcHHHHHHHHHhCCCC---cEEEEeCCcCCCCHHHHHHHHHh
Confidence 33468888888887765432 899999999 334447777765
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=111.28 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=79.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+.+||||||.|+||+. +|+|+++.|+||++|+++.|... +++++|++++.. .. ... .....+. ...
T Consensus 161 i~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~~----~~~v~~I-~D~ 226 (346)
T PRK14500 161 LYGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GTP----LENLPTL-PDR 226 (346)
T ss_pred ceEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hcc----ccCCeEE-eCC
Confidence 3589999999999965 99999999999999999998875 789988876432 11 100 0012222 223
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCee-cc-ccHHHHHHHHh
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHR 126 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~-~~l~~~l~~~~ 126 (331)
....|...+++.++...+.. ++++++||+. .+ ..+..+++.+.
T Consensus 227 ~~~~GPlagI~aaL~~~~~~---~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 227 GESVGPISGILTALQSYPGV---NWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred CCCCChHHHHHHHHHhCCCC---CEEEEECCcCCCCHHHHHHHHHhhh
Confidence 34569999999999986543 7899999993 33 44777777653
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=88.76 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=70.7
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 320 (331)
+++++.|++++.|. ++.|+++|.|+ +++.|.+|++++++.|++++.|.+ ++|+++++|++++.+. ++++++++.|
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig--~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~v~~~~~i 77 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIG--KNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGCTIPPGSLISFGVVI 77 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEEC--CCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCCEECCCCEEeCCcEe
Confidence 67889999999997 79999999999 889999999999999999999997 9999999999999996 7889888887
Q ss_pred cc
Q 020113 321 KS 322 (331)
Q Consensus 321 ~~ 322 (331)
++
T Consensus 78 g~ 79 (79)
T cd05787 78 GD 79 (79)
T ss_pred Cc
Confidence 64
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-12 Score=112.73 Aligned_cols=74 Identities=28% Similarity=0.383 Sum_probs=70.2
Q ss_pred ceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 251 NVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 251 ~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
...+|..+.|+++|.|+ +++.|++|+||++|.||+.+.|.+ |+|.+|++||+|+.|.+|+||++++|+++.+..
T Consensus 328 ~~l~g~d~iv~~~t~i~--~~s~ik~SviG~nC~Ig~~~~v~n-Silm~nV~vg~G~~IensIIg~gA~Ig~gs~L~ 401 (433)
T KOG1462|consen 328 VALVGADSIVGDNTQIG--ENSNIKRSVIGSNCDIGERVKVAN-SILMDNVVVGDGVNIENSIIGMGAQIGSGSKLK 401 (433)
T ss_pred eeccchhhccCCCceec--ccceeeeeeecCCccccCCcEEEe-eEeecCcEecCCcceecceecccceecCCCeee
Confidence 37788899999999999 999999999999999999999999 999999999999999999999999999988765
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=106.02 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=19.7
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEcc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKS 322 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~ 322 (331)
++|+++|+||++|.|+++|+|+.+|+|+.++.| ++|.|+++++|+.
T Consensus 136 ~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~ 182 (338)
T COG1044 136 VVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGA 182 (338)
T ss_pred cEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEcc
Confidence 444444444444444444444444444444444 2444444444443
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=99.39 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=72.2
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEcc
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLP 316 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~ 316 (331)
.+..+++++.|.++++|.+.+.||++|.|+ +++.|. +++|+++|.|++++.|.+ |+|+++++|++++.+.+++|++
T Consensus 16 ~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~--~~~~i~~~~~Ig~~~~I~~~~~i~~-siig~~~~I~~~~~i~~siIg~ 92 (163)
T cd05636 16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIG--PNAYIRGYTVLGDGCVVGNSVEVKN-SIIMDGTKVPHLNYVGDSVLGE 92 (163)
T ss_pred CCeEEcCCCEECCCCEEeCCeEECCCCEEC--CCCEEcCCCEECCCCEECCCcEEee-eEecCCCEeccCCEEecCEECC
Confidence 445677888888888887788888888888 778886 699999999999999987 9999999999999998888888
Q ss_pred CeEEccCcc
Q 020113 317 HKEIKSSIV 325 (331)
Q Consensus 317 ~~~i~~~~~ 325 (331)
++.|+++..
T Consensus 93 ~~~I~~~~~ 101 (163)
T cd05636 93 NVNLGAGTI 101 (163)
T ss_pred CCEECCCcE
Confidence 888887764
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-12 Score=110.08 Aligned_cols=154 Identities=20% Similarity=0.241 Sum_probs=110.2
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHH--------cCCCEEEEEeccChHHHHHHHHHhhhc
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKA--------VGVTEVVLAINYQPEVMLNFLKEFEKK 70 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~--------~gi~~i~iv~~~~~~~i~~~~~~~~~~ 70 (331)
-+++||||.|+||+. ..||+|+|++ |+|++++.++++.+ .++..+++.+.+..+.+.+++++....
T Consensus 2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 478999999999964 7899999999 99999999999986 346777777777778899999985412
Q ss_pred cCeEEEEeeCCcccCChHHHHHHHhhccCCCC-CcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---------ecCCC
Q 020113 71 LEIKITCSQETEPLGTAGPLALARDKLIDDSG-EPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---------VDEPS 140 (331)
Q Consensus 71 ~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~-~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---------~~~~~ 140 (331)
.+..+.+.....|..+.++... +++... +......||++.......+++.|.+++.....+ +.+|.
T Consensus 79 ~~~v~~f~Q~~~P~~~~~~~~~----~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~ 154 (266)
T cd04180 79 NSYVITFMQGKLPLKNDDDARD----PHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL 154 (266)
T ss_pred CCceEEEEeCCceEEeCCCCcc----cCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH
Confidence 2333445554556555554442 221110 156677888888777788999999988875444 44677
Q ss_pred CceEEEEcCCcCceeEeeecCCC
Q 020113 141 KYGVVVMEETTGKVEKFVEKPKN 163 (331)
Q Consensus 141 ~~~~v~~d~~~~~v~~~~ek~~~ 163 (331)
-+|++..++. .....+.+|+..
T Consensus 155 ~lG~~~~~~~-~~~~kvv~K~~~ 176 (266)
T cd04180 155 FIGIAIQNRK-AINQKVVPKTRN 176 (266)
T ss_pred HHHHHHHcCC-CEEEEEEECCCC
Confidence 7777776665 677788888653
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=90.72 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=55.5
Q ss_pred eEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 247 NIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+|++++.|. ++.||++|.|+ ++.|++|+++++|.|++++.|.+ |+|+++++||+++.++++++++++.|+++...
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~---~~~I~~svi~~~~~Ig~~~~I~~-siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v 77 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS---GGTVENSVLFRGVRVGSGSVVED-SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVI 77 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc---CeEEEeCEEeCCCEECCCCEEEE-eEEcCCCEECCCCEEEeEEECCCCEECCCCEE
Confidence 445555553 56666777765 26677788888888888888887 88888888888888888888877777776544
Q ss_pred C
Q 020113 327 P 327 (331)
Q Consensus 327 ~ 327 (331)
+
T Consensus 78 ~ 78 (104)
T cd04651 78 G 78 (104)
T ss_pred C
Confidence 3
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=100.52 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=54.7
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEcc
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLP 316 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~ 316 (331)
++.++++++.|++.++|+++++||++|.|+ +++.|.++.|+++|.|++++.|.+ ++|+++++|++++.|. ++.+++
T Consensus 14 ~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~--~~~~I~~~~Ig~~~~I~~~~~i~~-~~ig~~~~Ig~~~~I~~~~~Ig~ 90 (193)
T cd03353 14 GDVEIGVDVVIDPGVILEGKTVIGEDCVIG--PNCVIKDSTIGDGVVIKASSVIEG-AVIGNGATVGPFAHLRPGTVLGE 90 (193)
T ss_pred CCeEECCCcEECCCCEEeCcCEECCCCEEC--CCcEEeCCEECCCCEEcCCeEEEe-eEECCCCEECCccEEcCccEECC
Confidence 345667777777777777777777777777 667776667777777777666665 6666666666666664 455555
Q ss_pred CeEEccC
Q 020113 317 HKEIKSS 323 (331)
Q Consensus 317 ~~~i~~~ 323 (331)
++.|+++
T Consensus 91 ~~~Ig~~ 97 (193)
T cd03353 91 GVHIGNF 97 (193)
T ss_pred CCEECCc
Confidence 5554443
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=96.57 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=61.1
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
.+..+++++.|++++.|++++.|+++|.|+ +++.|.+|+|++++.|++++.+.+ ++|+++++|++++.+.
T Consensus 34 ~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~siig~~~~I~~~~~i~~-siIg~~~~I~~~~~i~ 103 (163)
T cd05636 34 GPVIIGKGCEIGPNAYIRGYTVLGDGCVVG--NSVEVKNSIIMDGTKVPHLNYVGD-SVLGENVNLGAGTITA 103 (163)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEEC--CCcEEeeeEecCCCEeccCCEEec-CEECCCCEECCCcEEc
Confidence 345677888888888888888888899998 889999999999999999999988 9999999999999873
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=96.08 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=67.0
Q ss_pred CCccCCCceEecceEEcC----CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEE
Q 020113 239 SSKLATGSNIIGNVLVHE----GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVV 314 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~----~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v 314 (331)
+.+|++++.|.++++|+. .+.||++|+|| ++|.|++|+|+++|.||++++|-+++.||++|.||.|+.++....
T Consensus 50 ~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIG--H~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~ 127 (176)
T COG0663 50 PIRIGARTNIQDGVVIHADPGYPVTIGDDVTIG--HGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKE 127 (176)
T ss_pred ceEECCCceecCCeEEecCCCCCeEECCCcEEc--CccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcC
Confidence 456788888888888886 67888888888 888888888999999999988888888888888888888877666
Q ss_pred ccCeEEccC
Q 020113 315 LPHKEIKSS 323 (331)
Q Consensus 315 ~~~~~i~~~ 323 (331)
-|...+--+
T Consensus 128 ~p~~~L~~G 136 (176)
T COG0663 128 IPGGSLVVG 136 (176)
T ss_pred CCCCeEeec
Confidence 655444433
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=94.95 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=60.1
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPH 317 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~ 317 (331)
..+++++.|+++++|++++.||++|.|+ .++.|. ++.|+++|.|+.++.+..++.|+++|.||+++.+. ++.|+++
T Consensus 100 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~ 177 (201)
T TIGR03570 100 ASIGEGTVIMAGAVINPDVRIGDNVIIN--TGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAG 177 (201)
T ss_pred CEECCCCEECCCCEECCCCEECCCcEEC--CCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCC
Confidence 3456666666666666677777777776 667774 57888888888888888778888888888888874 5666666
Q ss_pred eEEccCc
Q 020113 318 KEIKSSI 324 (331)
Q Consensus 318 ~~i~~~~ 324 (331)
++|+++.
T Consensus 178 ~~i~~~~ 184 (201)
T TIGR03570 178 AIVGAGA 184 (201)
T ss_pred CEECCCC
Confidence 6666544
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=94.10 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=61.1
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPH 317 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~ 317 (331)
..+++++.|+++++|++++.||++|.|+ .++.|. ++.||++|.|+.++.+.++++|+++|.||.++.+. ++.|+++
T Consensus 97 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~ 174 (197)
T cd03360 97 AVIGEGCVIMAGAVINPDARIGDNVIIN--TGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAG 174 (197)
T ss_pred CEECCCCEEcCCCEECCCCEECCCeEEC--CCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCC
Confidence 3466777777777777777777777777 667774 67788888888888887778888888888888774 4666666
Q ss_pred eEEccCc
Q 020113 318 KEIKSSI 324 (331)
Q Consensus 318 ~~i~~~~ 324 (331)
++++++.
T Consensus 175 ~~v~~~~ 181 (197)
T cd03360 175 AIIGAGA 181 (197)
T ss_pred CEECCCC
Confidence 6666544
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=101.66 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=35.3
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEECc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVAD 305 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~~ 305 (331)
.+.+++++.|+++++|++++.||++|.|+ ++++|. +++||++|.|+++++|.+ +++||++|+|++
T Consensus 11 ~a~ig~~~~I~p~~~I~~~v~IG~~~~I~--~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~ 88 (254)
T cd03351 11 GAKIGENVEIGPFCVIGPNVEIGDGTVIG--SHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIRE 88 (254)
T ss_pred CCEECCCCEECCCcEECCCCEECCCCEEC--CCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECC
Confidence 34455555555555555555555555555 445553 355555555555555542 244555555555
Q ss_pred ccEE
Q 020113 306 EVYS 309 (331)
Q Consensus 306 ~~~i 309 (331)
+++|
T Consensus 89 ~~~I 92 (254)
T cd03351 89 FVTI 92 (254)
T ss_pred ccEE
Confidence 4444
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=90.97 Aligned_cols=203 Identities=19% Similarity=0.181 Sum_probs=131.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
|+|+|.|.++|..- |.+.+++|+|||.|+++++..++ +++|+|.+. .+.+.+.-++ +|.++.+..+.
T Consensus 6 AiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A~~----ygak~~~~Rp~ 73 (228)
T COG1083 6 AIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD--SEEILEEAKK----YGAKVFLKRPK 73 (228)
T ss_pred EEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCC--cHHHHHHHHH----hCccccccCCh
Confidence 89999998888844 99999999999999999999998 788887654 4455555444 45555333222
Q ss_pred c----ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEE-cCCcCce
Q 020113 82 E----PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVM-EETTGKV 154 (331)
Q Consensus 82 ~----~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~-d~~~~~v 154 (331)
+ ...+.++++++++......+ .++++.+-. +...+++++++.+.+...+..+.+.+.+..-+-.+ +.+ +.+
T Consensus 74 ~LA~D~ast~~~~lh~le~~~~~~~-~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~-~~~ 151 (228)
T COG1083 74 ELASDRASTIDAALHALESFNIDED-TLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNN-GEV 151 (228)
T ss_pred hhccCchhHHHHHHHHHHHhccccC-eeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHhcC-Cce
Confidence 1 12233567777777765543 577777777 56678999999999888766555222211111111 222 566
Q ss_pred eEeeecCC--C-----CCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHH
Q 020113 155 EKFVEKPK--N-----FVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYITG 226 (331)
Q Consensus 155 ~~~~ek~~--~-----~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d~~~a 226 (331)
..+.|.|. . +.....+..+|+++.+.|..-+ ..| .++...|.++. ...||++..|+-.+
T Consensus 152 ~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~ia 218 (228)
T COG1083 152 KPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLEIA 218 (228)
T ss_pred eecccCCccccccccchhhhhhcCcEEEehHHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHHHH
Confidence 66666542 1 2234567889999998776521 111 12344565544 37799999999998
Q ss_pred HHHHHh
Q 020113 227 LRLYLD 232 (331)
Q Consensus 227 ~~~~l~ 232 (331)
+..+..
T Consensus 219 e~l~~~ 224 (228)
T COG1083 219 ENLIFL 224 (228)
T ss_pred HHHhhh
Confidence 877653
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=95.87 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred CCCcEECCCCCceE-----eCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 261 GDGCLIGPDKHACI-----SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 261 ~~~~~I~~~~~~~i-----~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
|++|.|+ ++|+| .+|+|+++|.||+++.|.+ |+|+++|.||.++.+. ++.|++++.|+++
T Consensus 51 g~~t~Ig--~~~~I~~~~~~~siIg~~~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g~~IG~~s~Vgag 116 (192)
T TIGR02287 51 KEGANIQ--DNCVMHGFPGQDTVVEENGHVGHGAILHG-CIVGRNALVGMNAVVMDGAVIGENSIVAAS 116 (192)
T ss_pred CCCCEEC--CCeEEeccCCCCCeECCCCEECCCCEEcC-CEECCCCEECCCcccCCCeEECCCCEEcCC
Confidence 3444444 55665 3466777777777776666 7777777776666653 3555555555444
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=101.22 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=59.3
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~ 304 (331)
+.+.+++++.|++.++|++++.||++|.|+ ++++|. +++||++|.|++++.|++ .++||++|+|+
T Consensus 13 ~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~--~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~ 90 (262)
T PRK05289 13 PGAKIGENVEIGPFCVIGPNVVIGDGTVIG--SHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIR 90 (262)
T ss_pred CCCEECCCCEECCCeEECCCCEECCCCEEC--CCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEEC
Confidence 445566666666777777777777777777 667775 577888888888888864 47788888888
Q ss_pred cccEEcC--------cEEccCeEEccCcc
Q 020113 305 DEVYSNG--------AVVLPHKEIKSSIV 325 (331)
Q Consensus 305 ~~~~i~~--------~~v~~~~~i~~~~~ 325 (331)
++++|.. +.|++++.|+++++
T Consensus 91 e~~~I~~~~~~~~~~t~IG~~~~I~~~~~ 119 (262)
T PRK05289 91 EFVTINRGTVQGGGVTRIGDNNLLMAYVH 119 (262)
T ss_pred CCeEEecccccCCCeeEECCceEECCCCE
Confidence 7777753 34666555554443
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=92.73 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=58.2
Q ss_pred CccCCCceEecceEEcC---CcEECCCcEECCCCCceE-----eCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-
Q 020113 240 SKLATGSNIIGNVLVHE---GAKIGDGCLIGPDKHACI-----SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN- 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~~~i-----~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~- 310 (331)
..+++++.|+++++|.. .+.||++|.|+ ++|.| .+|+|+++|.|++++.+.+ ++||++|.||.++.|.
T Consensus 19 v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig--~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~ 95 (155)
T cd04745 19 VIIGKNCYIGPHASLRGDFGRIVIRDGANVQ--DNCVIHGFPGQDTVLEENGHIGHGAILHG-CTIGRNALVGMNAVVMD 95 (155)
T ss_pred EEECCCCEECCCcEEeCCCCcEEECCCCEEC--CCCEEeecCCCCeEEcCCCEECCCcEEEC-CEECCCCEECCCCEEeC
Confidence 34555666665555543 35667777777 77887 4588888888888888877 8888888888888774
Q ss_pred CcEEccCeEEccCc
Q 020113 311 GAVVLPHKEIKSSI 324 (331)
Q Consensus 311 ~~~v~~~~~i~~~~ 324 (331)
++.|+++++|+.+.
T Consensus 96 g~~Ig~~~~Ig~~s 109 (155)
T cd04745 96 GAVIGEESIVGAMA 109 (155)
T ss_pred CCEECCCCEECCCC
Confidence 46777777666554
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=88.18 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=54.7
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEcc---------------ceEECCCcEECc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVEN---------------MTILGEDVHVAD 305 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~---------------~~~i~~~~~i~~ 305 (331)
+++++.|.++++|++++.||++|.|+ .++.| .+++|+++|.|++++.+.+ +++|+++|.||+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~ 78 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQ--SNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGA 78 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEEC--CCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECc
Confidence 35666777777777777777777777 66777 3677777777777776532 277778888887
Q ss_pred ccEEc-CcEEccCeEEccC
Q 020113 306 EVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 306 ~~~i~-~~~v~~~~~i~~~ 323 (331)
++.+. ++.+++++.|+++
T Consensus 79 ~~~v~~~~~ig~~~~i~~~ 97 (119)
T cd03358 79 NATILPGVTIGEYALVGAG 97 (119)
T ss_pred CCEEeCCcEECCCCEEccC
Confidence 77773 4666666666543
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-11 Score=104.76 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=38.4
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
++++++.|+++++|++++.||++|.|+ .++.| .+++||++|.|+++++|.++|+||++|.|+++++|
T Consensus 105 ~Ig~~v~I~~~~~I~~~v~IG~~~~I~--~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 105 KIGDGVTIGPNVVIGAGVEIGENVIIG--PGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred EECCCCEECCCcEEccCcEECCcEEEC--CCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 344444455555555555555555555 45555 35666666666666666644666666666666666
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=92.91 Aligned_cols=78 Identities=26% Similarity=0.439 Sum_probs=49.8
Q ss_pred ccCCCceEecceEEc----CCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEc
Q 020113 241 KLATGSNIIGNVLVH----EGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVL 315 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~----~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~ 315 (331)
.|++++.|+++++|+ .++.|+++|.|+ +++.+.+++||++|.||.++.|.++++|++++.|++++.+. +..|.
T Consensus 41 ~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig--~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~ 118 (155)
T cd04745 41 VIRDGANVQDNCVIHGFPGQDTVLEENGHIG--HGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIP 118 (155)
T ss_pred EECCCCEECCCCEEeecCCCCeEEcCCCEEC--CCcEEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeC
Confidence 455555555555552 346666666666 66666777777777777777776667777777777777664 44555
Q ss_pred cCeEE
Q 020113 316 PHKEI 320 (331)
Q Consensus 316 ~~~~i 320 (331)
+++.+
T Consensus 119 ~~~~v 123 (155)
T cd04745 119 PRSLI 123 (155)
T ss_pred CCCEE
Confidence 55554
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-10 Score=101.36 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=58.4
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc---------
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN--------- 310 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~--------- 310 (331)
.+++++.|+++++|++++.||++|+|+ .++.|. ++.||++|.|+++++|.+++.||++|+|+++++|.
T Consensus 114 ~ig~~~~I~~~~~I~~~~~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~ 191 (343)
T PRK00892 114 KIGEGVSIGPNAVIGAGVVIGDGVVIG--AGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFAND 191 (343)
T ss_pred EECCCCEECCCeEEeccceeCCCcEEC--CCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccC
Confidence 455556666666666666666666666 567774 57777777777777777767788888888888873
Q ss_pred -----------CcEEccCeEEccCcc
Q 020113 311 -----------GAVVLPHKEIKSSIV 325 (331)
Q Consensus 311 -----------~~~v~~~~~i~~~~~ 325 (331)
+++|++++.|+++..
T Consensus 192 ~~~~~~~~~~g~v~Ig~~v~IGa~~~ 217 (343)
T PRK00892 192 RGGWVKIPQLGRVIIGDDVEIGANTT 217 (343)
T ss_pred CCceeeccccccEEECCCcEECCCcE
Confidence 467777777777653
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=82.11 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=36.2
Q ss_pred ECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 260 IGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
||++|.|+ +++.|.+++|+++|.|++++.|.+ ++|+++++|++++.|.++++++++.|+++...
T Consensus 2 ig~~~~I~--~~~~i~~~~Ig~~~~I~~~~~i~~-s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v 65 (81)
T cd04652 2 VGENTQVG--EKTSIKRSVIGANCKIGKRVKITN-CVIMDNVTIEDGCTLENCIIGNGAVIGEKCKL 65 (81)
T ss_pred ccCCCEEC--CCCEEeCcEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeccEEeCCCEECCCCEE
Confidence 34444444 444455555666666666666655 66666666666666666666655555555443
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=83.62 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=67.6
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPH 317 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 317 (331)
+..+++++.|.+++.+...+.||++|.|+ +++.|. +++||++|.||. .|.+ |+|+++++|++++.|.+++|+++
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig--~~~~I~~~v~IG~~~~Ig~--~i~~-svi~~~~~i~~~~~lg~siIg~~ 85 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVK--MGARIYGNTTIGPTCKIGG--EVED-SIIEGYSNKQHDGFLGHSYLGSW 85 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEEC--CCCEEeCcCEECCCCEECC--EECc-cEEcCCCEecCcCEEeeeEECCC
Confidence 44577778888888887788888888888 778776 588888888875 5666 99999999999999999999999
Q ss_pred eEEccCcc
Q 020113 318 KEIKSSIV 325 (331)
Q Consensus 318 ~~i~~~~~ 325 (331)
+.|+++.-
T Consensus 86 v~ig~~~~ 93 (101)
T cd05635 86 CNLGAGTN 93 (101)
T ss_pred CEECCCce
Confidence 99998753
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=98.23 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=36.0
Q ss_pred CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEc--------cceEECCCcEECcccEE-cCcEEccCeEEccCccC
Q 020113 257 GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVE--------NMTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~--------~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~ 326 (331)
++.||++|.|+ .+++|. ++.||++|.|+.++.|. ..++|+++|.||.++.| .++.|+++++|+.++..
T Consensus 129 ga~IGeGt~I~--~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 129 GAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred CcEECCCCEEC--CCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 34455555555 445553 45555555555555543 12566666666666666 35555555555554433
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=91.13 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=58.7
Q ss_pred CccCCCceEecceEEcCC---cEECCCcEECCCCCceEeC-----CEEcCCCEECCCcEEccceEECCCcEECcccEE-c
Q 020113 240 SKLATGSNIIGNVLVHEG---AKIGDGCLIGPDKHACISS-----SIIGWHSTVGRWARVENMTILGEDVHVADEVYS-N 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~ 310 (331)
..+++++.|++++.|... +.||++|.|+ ++|.|.. ++|++++.|+.++.+.+ ++|+++|.|+.++.+ .
T Consensus 19 v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig--~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~ 95 (154)
T cd04650 19 VVIGELTSVWHYAVIRGDNDSIYIGKYSNVQ--ENVSIHTDHGYPTEIGDYVTIGHNAVVHG-AKVGNYVIVGMGAILLN 95 (154)
T ss_pred EEECCCCEEcCCeEEEcCCCcEEECCCCEEC--CCCEEEeCCCCCeEECCCCEECCCcEEEC-cEECCCCEEcCCCEEeC
Confidence 345666666666655543 4677777777 6677753 77888888888888877 888888888888887 4
Q ss_pred CcEEccCeEEccCc
Q 020113 311 GAVVLPHKEIKSSI 324 (331)
Q Consensus 311 ~~~v~~~~~i~~~~ 324 (331)
++.|+++++++++.
T Consensus 96 ~~~Ig~~~~vg~~~ 109 (154)
T cd04650 96 GAKIGDHVIIGAGA 109 (154)
T ss_pred CCEECCCCEECCCC
Confidence 67777777777554
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=99.54 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=50.7
Q ss_pred eEEecCCHHHHHHHHHHHHhhhccccCCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEE
Q 020113 213 FWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARV 291 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~~l~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i 291 (331)
.+.-+++|..-+..-..++.+ .......+++++.|.+.+.|++++.|+++|+|+ .++.| .++.|+++|.|+.++.|
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~-~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~--~~v~IG~~~~I~~~~~Ig~~~~I 142 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDP-PPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIG--AGVEIGENVIIGPGVVIGDDVVI 142 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcc-cccccCCcCCCCEeCCCcEECCCCEECCCcEEc--cCcEECCcEEECCCCEECCccee
Confidence 366677887555433333322 122234466666666666666666665555555 33444 23444444444444444
Q ss_pred ccceEECCCcEECcccEE-cCcEEccCeEEc
Q 020113 292 ENMTILGEDVHVADEVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 292 ~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~ 321 (331)
+++|.|+.+++|+.++.| .++.|+++++|+
T Consensus 143 G~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 143 GDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred CCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 444444444444444444 234444444443
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=93.57 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccCc
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~ 324 (331)
+|+|++++.||+++.+.+ |+|+++|.||.++++ .++.|+++++++++.
T Consensus 71 ~siIg~~~~Ig~~a~i~g-~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags 119 (196)
T PRK13627 71 DTIVGENGHIGHGAILHG-CVIGRDALVGMNSVIMDGAVIGEESIVAAMS 119 (196)
T ss_pred CCEECCCCEECCCcEEee-EEECCCCEECcCCccCCCcEECCCCEEcCCC
Confidence 366777777777777776 778888888877776 345555555555444
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.5e-10 Score=87.84 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=47.4
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE-
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS- 309 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i- 309 (331)
..+++++.|.++++++.++.||++|.|+ .++.|. +++|+++|.|++++.+.+ .++|++++.|+.++.|
T Consensus 14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~ 91 (139)
T cd03350 14 AFIGPGAVLMMPSYVNIGAYVDEGTMVD--SWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVV 91 (139)
T ss_pred CEECCCCEECCCCEEccCCEECCCeEEc--CCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEEC
Confidence 3444555555555555555666666666 556653 566666666666666652 2556666666666666
Q ss_pred cCcEEccCeEEccCcc
Q 020113 310 NGAVVLPHKEIKSSIV 325 (331)
Q Consensus 310 ~~~~v~~~~~i~~~~~ 325 (331)
.++.|+++++|+++..
T Consensus 92 ~gv~Ig~~~~Ig~g~~ 107 (139)
T cd03350 92 EGVIVGKGAVLAAGVV 107 (139)
T ss_pred CCCEECCCCEEcCCCE
Confidence 3555555555554443
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=102.94 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=58.9
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc-------------------ceEEC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN-------------------MTILG 298 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~-------------------~~~i~ 298 (331)
...|++++.|+++++|+.++.||++|.|+ ++++|. ++.|+++|.|+++++|+. +++||
T Consensus 130 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~--~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig 207 (343)
T PRK00892 130 GVVIGDGVVIGAGAVIGDGVKIGADCRLH--ANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIG 207 (343)
T ss_pred cceeCCCcEECCCCEEcCCcEECCCCEeC--CCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEEC
Confidence 34566666666666666777777777777 667775 466888888888888852 38888
Q ss_pred CCcEECcccEEc-----CcEEccCeEEccCc
Q 020113 299 EDVHVADEVYSN-----GAVVLPHKEIKSSI 324 (331)
Q Consensus 299 ~~~~i~~~~~i~-----~~~v~~~~~i~~~~ 324 (331)
++|.||++++|. +++|++++.|+..+
T Consensus 208 ~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v 238 (343)
T PRK00892 208 DDVEIGANTTIDRGALDDTVIGEGVKIDNLV 238 (343)
T ss_pred CCcEECCCcEEecCccccceeCCCCEEeCCe
Confidence 889999988884 35555555555443
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-10 Score=92.95 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=57.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEc----cceEECCCcEECcccEEcCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVE----NMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~----~~~~i~~~~~i~~~~~i~~~ 312 (331)
++++++.|.+.+.|..++.||++|.|+ .+|+|.. .+||++|.||++|.|. .+|+|+++++|++++.|.+|
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~--~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~s 87 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVG--PLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGC 87 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEEC--CCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCC
Confidence 456666666666666666667777776 5566652 5777778888777773 23788888888888887777
Q ss_pred EEccCeEEccCc
Q 020113 313 VVLPHKEIKSSI 324 (331)
Q Consensus 313 ~v~~~~~i~~~~ 324 (331)
+|++++.|+.+.
T Consensus 88 iIg~~~~IG~ga 99 (192)
T TIGR02287 88 IVGRNALVGMNA 99 (192)
T ss_pred EECCCCEECCCc
Confidence 777777776554
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=98.12 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=36.6
Q ss_pred EECCCcEECCCCCceEe-----------CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 259 KIGDGCLIGPDKHACIS-----------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~-----------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
.||++|.|+ ++|+|. +|+||++|.||++|.|.+ |+|+++|.||.+++| .++.|+++++|+++
T Consensus 93 ~IG~~~~I~--d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g-~~Igd~v~IG~ga~I~~gv~Ig~~a~Igag 166 (269)
T PLN02296 93 SVGSGTNIQ--DNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG-CTVEDEAFVGMGATLLDGVVVEKHAMVAAG 166 (269)
T ss_pred EECCCCEEC--CCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC-CEECCCcEECCCcEECCCeEECCCCEECCC
Confidence 444555555 555553 466777777777776655 666666666666666 34445555554443
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=99.66 Aligned_cols=68 Identities=21% Similarity=0.321 Sum_probs=35.2
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
+.+++++.|+++++|++++.||++|+|+ .+|+| .++.||++|.|++++.|..++.||++|.|++|++|
T Consensus 112 A~i~~~~~ig~~~vI~~~v~IG~~~~I~--~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 112 ATIGKNVSIGPNVVIGAGVVIGENVVIG--AGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred CccCCCCccCCCeEECCCCEECCCcEEC--CCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 3444555555555555555555555555 44444 24555555555555555555555555555555544
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-10 Score=89.68 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=55.2
Q ss_pred cCCCceEecceEEcCC---cEECCCcEECCCCCceEeC-----CEEcCCCEECCCcEEccceEECCCcEECcccEEc-Cc
Q 020113 242 LATGSNIIGNVLVHEG---AKIGDGCLIGPDKHACISS-----SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GA 312 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~ 312 (331)
+++++.|++++.|..+ ++||++|.|+ ++++|.. ++|+++|.|+.+|.+.+ ++|++++.|+.++.+. ++
T Consensus 20 ig~~~~I~~~~~I~~~~~~~~IG~~~~I~--~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~~ 96 (153)
T cd04645 20 LGEGSSVWFGAVLRGDVNPIRIGERTNIQ--DGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGA 96 (153)
T ss_pred ECCCcEEcCCeEEECCCCceEECCCCEEC--CCcEEecCCCCCeEEcCCcEECCCcEEee-eEECCCCEECCCCEEcCCC
Confidence 4455555555544432 3666666666 7777765 48888888888888887 8888888888888874 66
Q ss_pred EEccCeEEccCc
Q 020113 313 VVLPHKEIKSSI 324 (331)
Q Consensus 313 ~v~~~~~i~~~~ 324 (331)
+|++++.|+.+.
T Consensus 97 ~ig~~~~ig~~~ 108 (153)
T cd04645 97 VIGKGSIVAAGS 108 (153)
T ss_pred EECCCCEECCCC
Confidence 666666666544
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=79.91 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=49.3
Q ss_pred ECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 260 IGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
||++|.|+ +++.|.+++|+++|.||+++.|.+ ++|+++++|++++.+.++++++++.|+++...
T Consensus 2 ig~~~~I~--~~~~i~~s~ig~~~~Ig~~~~i~~-svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i 65 (79)
T cd03356 2 IGESTVIG--ENAIIKNSVIGDNVRIGDGVTITN-SILMDNVTIGANSVIVDSIIGDNAVIGENVRV 65 (79)
T ss_pred ccCCcEEC--CCCEEeCCEECCCCEECCCCEEeC-CEEeCCCEECCCCEEECCEECCCCEECCCCEE
Confidence 45666666 566666678888888888888887 88888888888888888888888888776543
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=79.87 Aligned_cols=65 Identities=26% Similarity=0.433 Sum_probs=54.0
Q ss_pred ECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 260 IGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
||++|.|+ +++.|.+++|+++|.|++++.|.+ ++|+++++|++++.|.++++++++.|+++...+
T Consensus 2 ig~~~~I~--~~~~i~~s~ig~~~~ig~~~~i~~-s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 2 IGRGTSIG--EGTTIKNSVIGRNCKIGKNVVIDN-SYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred ccCCCEEC--CCCEEeccEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 56667777 667777788999999999999987 999999999999999888888888888776554
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-10 Score=89.85 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=41.0
Q ss_pred CccCCCceEecceEEc---CCcEECCCcEECCCCCceEeC-----------CEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 240 SKLATGSNIIGNVLVH---EGAKIGDGCLIGPDKHACISS-----------SIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~---~~~~i~~~~~I~~~~~~~i~~-----------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
..+++++.|+++++|. ..++||++|.|+ +++.|.+ +.||+++.++.++.+.+ ++||++|.||.
T Consensus 18 v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~--~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~ 94 (164)
T cd04646 18 VTIGPGTVVHPRATIIAEAGPIIIGENNIIE--EQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFES 94 (164)
T ss_pred eEECCCCEEcCCeEEecCCCCeEECCCCEEC--CCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-eEECCCCEEeC
Confidence 3455555555555553 235566666666 5565543 23555555555555555 55555555555
Q ss_pred ccEE-cCcEEccCeEEc
Q 020113 306 EVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 306 ~~~i-~~~~v~~~~~i~ 321 (331)
++.| .++.|+++++|+
T Consensus 95 ~a~I~~gv~Ig~~~~Ig 111 (164)
T cd04646 95 KSFVGKNVIITDGCIIG 111 (164)
T ss_pred CCEECCCCEECCCCEEe
Confidence 5555 233444444433
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-10 Score=89.18 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=47.7
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEccc----eEECCCcEECcccEEcCcE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVENM----TILGEDVHVADEVYSNGAV 313 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~~~~ 313 (331)
++++++|.+.++|.+++.||++|.|+ +++.|.. .+||++|.|+++|.|... ++|++++.|++++.+.+++
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~--~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~ 80 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVW--HYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAK 80 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEc--CCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcE
Confidence 44555555555555555555555555 4555543 266666666666666542 5666666666666666666
Q ss_pred EccCeEEccCc
Q 020113 314 VLPHKEIKSSI 324 (331)
Q Consensus 314 v~~~~~i~~~~ 324 (331)
|++++.|+.+.
T Consensus 81 Ig~~~~Ig~~~ 91 (154)
T cd04650 81 VGNYVIVGMGA 91 (154)
T ss_pred ECCCCEEcCCC
Confidence 66655555543
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=96.97 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=23.2
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVE 292 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~ 292 (331)
++|++++.|+++++|++++.||++|.|+ +++.|. +++||++|.|++++.|+
T Consensus 11 a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~--~~~~I~~~v~IG~~~~I~~~a~I~ 62 (254)
T TIGR01852 11 AEIGENVEIGPFCIVGPGVKIGDGVELK--SHVVILGHTTIGEGTRIFPGAVIG 62 (254)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEC--CCCEEeeeEEECCCCEECCCcEeC
Confidence 3344444444444444444444444444 334443 34444444444444443
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-10 Score=94.99 Aligned_cols=46 Identities=13% Similarity=0.315 Sum_probs=23.1
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
++||++|.||++|.|.+ |+|+++|.||.+++| .+++|++++.|+++
T Consensus 127 tvIG~~v~IG~~s~L~~-~~Igd~v~IG~~svI~~gavIg~~~~Ig~g 173 (246)
T PLN02472 127 TLIDRYVTIGAYSLLRS-CTIEPECIIGQHSILMEGSLVETHSILEAG 173 (246)
T ss_pred cEECCCCEECCCcEECC-eEEcCCCEECCCCEECCCCEECCCCEECCC
Confidence 55555555555555544 555555555555544 23444444444433
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.4e-10 Score=95.93 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=60.4
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceE---------eCCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI---------SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i---------~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+.|++++.|.++++|+.++.||++|.|+ .++.| ++++|+++|.||.+|.|.++++|++++.||.+++|.
T Consensus 130 a~IGeGt~I~~~a~IG~~v~IG~nv~I~--~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~ 207 (269)
T TIGR00965 130 AYVDEGTMVDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIG 207 (269)
T ss_pred cEECCCCEECCCcEECCCCEECCCCEEc--CCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEEC
Confidence 4578888888888888888888888888 66766 357899999999999888888888888888888883
Q ss_pred -CcEEccC
Q 020113 311 -GAVVLPH 317 (331)
Q Consensus 311 -~~~v~~~ 317 (331)
++.|++.
T Consensus 208 ~~~~I~~~ 215 (269)
T TIGR00965 208 QSTKIYDR 215 (269)
T ss_pred CCCEEecc
Confidence 4555543
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.3e-10 Score=91.88 Aligned_cols=85 Identities=18% Similarity=0.348 Sum_probs=54.5
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCe
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHK 318 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~ 318 (331)
.+...+.++.+++|++++.|++++.|| +++.|. +++|+++|.||.+|.|..++++.++++||+++.| .++.+.+++
T Consensus 92 ~i~~~~~ig~~~~i~~~~~i~~~~~ig--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~ 169 (197)
T cd03360 92 VVSPSAVIGEGCVIMAGAVINPDARIG--DNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGV 169 (197)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEEC--CCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCC
Confidence 345555555566666666666666666 666663 6666666666777776666667777777777777 366777777
Q ss_pred EEccCccCC
Q 020113 319 EIKSSIVNP 327 (331)
Q Consensus 319 ~i~~~~~~~ 327 (331)
+|+++....
T Consensus 170 ~ig~~~~v~ 178 (197)
T cd03360 170 TIGAGAIIG 178 (197)
T ss_pred EECCCCEEC
Confidence 776665443
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-10 Score=96.98 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=7.2
Q ss_pred CEEcCCCEECCCcEEc
Q 020113 277 SIIGWHSTVGRWARVE 292 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~ 292 (331)
++||++|.|+++|+|.
T Consensus 78 v~IG~~~~Ig~~~~I~ 93 (254)
T cd03351 78 LEIGDNNTIREFVTIH 93 (254)
T ss_pred EEECCCCEECCccEEe
Confidence 3444444444444443
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=85.40 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=65.0
Q ss_pred ccCCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEeC--------CEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 237 NSSSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACISS--------SIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 237 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~~--------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
...+.+++++.|++ ++.|++++.||++|.|+ ++++|.+ ++||++|.||.++.+.+++.||+++.|+++
T Consensus 45 ~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~--h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igag 122 (146)
T PRK10191 45 QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIR--HGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAG 122 (146)
T ss_pred CCCCEECCCeEECCCCeEEECCCcEECCCCEEC--CCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCC
Confidence 34456777777776 57777777777777777 6676642 579999999999999988999999999999
Q ss_pred cEEcCcEEccCeEEccC
Q 020113 307 VYSNGAVVLPHKEIKSS 323 (331)
Q Consensus 307 ~~i~~~~v~~~~~i~~~ 323 (331)
+.+.+.+..+..+++..
T Consensus 123 s~V~~dv~~~~~v~G~p 139 (146)
T PRK10191 123 SVVLDSVPDNALVVGEK 139 (146)
T ss_pred CEECCccCCCcEEEccC
Confidence 99987766666665543
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.07 E-value=8e-10 Score=89.72 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=31.9
Q ss_pred cEECCCcEECCCCCceEeC-CEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEcc
Q 020113 258 AKIGDGCLIGPDKHACISS-SIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKS 322 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~~-s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 322 (331)
+.||++|.|+ .++.|.+ ++||++|.||.+|.|.+ +.||++|.||.++.|.++.|++++.+++
T Consensus 65 v~Ig~~~~I~--~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 65 VWIGKNVSIA--HGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred EEECCCceEC--CCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 3344444444 4444442 55555555555555554 5555555555555555555555555543
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=86.73 Aligned_cols=88 Identities=22% Similarity=0.287 Sum_probs=67.0
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCC-------------CCceEe-----CCEEcCCCEECCCcEEccceEECCC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPD-------------KHACIS-----SSIIGWHSTVGRWARVENMTILGED 300 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~-------------~~~~i~-----~s~i~~~~~ig~~~~i~~~~~i~~~ 300 (331)
.+.+++++.|-+++.|++++.|..+++|... ++++|+ .++||++|.||+++.|.+ |.|+++
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG-c~Ig~~ 95 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG-CTIGDN 95 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE-eEECCC
Confidence 3456666666666666666654444444222 788885 388999999999999999 999999
Q ss_pred cEECcccEEcC-cEEccCeEEccCccCC
Q 020113 301 VHVADEVYSNG-AVVLPHKEIKSSIVNP 327 (331)
Q Consensus 301 ~~i~~~~~i~~-~~v~~~~~i~~~~~~~ 327 (331)
|.||=|++|-+ +.|+.++.|+++...+
T Consensus 96 ~lIGmgA~vldga~IG~~~iVgAgalV~ 123 (176)
T COG0663 96 VLIGMGATVLDGAVIGDGSIVGAGALVT 123 (176)
T ss_pred cEEecCceEeCCcEECCCcEEccCCccc
Confidence 99999999864 9999999988876655
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-10 Score=78.49 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=48.1
Q ss_pred cCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 255 HEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 255 ~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
++++.|++++.|++ +++|+++|.||++|.|.+ ++++++++|++++.|.++++++++.++++..
T Consensus 3 ~~~~~I~~~~~i~~-------~~~Ig~~~~Ig~~~~i~~-sii~~~~~i~~~~~i~~sii~~~~~v~~~~~ 65 (80)
T cd05824 3 DPSAKIGKTAKIGP-------NVVIGPNVTIGDGVRLQR-CVILSNSTVRDHSWVKSSIVGWNSTVGRWTR 65 (80)
T ss_pred CCCCEECCCCEECC-------CCEECCCCEECCCcEEee-eEEcCCCEECCCCEEeCCEEeCCCEECCCcE
Confidence 44455555555552 377888888888888888 8899999999999888888888888887643
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=88.42 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=49.1
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe----CCEEcCCCEECCCcEEccc----------eEECCCcEECccc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS----SSIIGWHSTVGRWARVENM----------TILGEDVHVADEV 307 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~----~s~i~~~~~ig~~~~i~~~----------~~i~~~~~i~~~~ 307 (331)
|++++.|.+.+.|..++.||++|.|+ +++.|. .++||++|.|+++|+|.+. +.||+++.++.++
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~--~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~ 79 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVH--PRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGC 79 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEc--CCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCc
Confidence 56666666666666666677777776 556663 2577777777777777652 4566666665555
Q ss_pred EEcCcEEccCeEEcc
Q 020113 308 YSNGAVVLPHKEIKS 322 (331)
Q Consensus 308 ~i~~~~v~~~~~i~~ 322 (331)
.+.+++|++++.|+.
T Consensus 80 ~i~~~~IGd~~~Ig~ 94 (164)
T cd04646 80 KCEALKIGNNNVFES 94 (164)
T ss_pred EEEeeEECCCCEEeC
Confidence 555444444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=101.55 Aligned_cols=82 Identities=13% Similarity=0.291 Sum_probs=50.1
Q ss_pred cCCCceEec--ceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 242 LATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 242 i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
...|+.+.. .++|+..+.||.+|+|. .++.++ ++.||++|+||++|.|.+ |.|++++.|...+++.++.|+.++
T Consensus 251 m~~GVtl~dP~t~~i~~dv~ig~DvvI~--p~v~l~G~t~ig~~v~iGpg~~i~d-s~I~~~a~I~~~S~ie~s~vg~~~ 327 (460)
T COG1207 251 MLAGVTLIDPATTYIRGDVEIGRDVVIE--PNVILEGNTVIGDNVVIGPGSVIKD-SVIGDNAVIKAYSVIEGSTVGEGA 327 (460)
T ss_pred HHcCcEEeCCCeEEEcCcEEECCceEEe--cCcEEeeeEEECCceEECCCcEEEe-eEEcCCCEEEecceeeccEecCCc
Confidence 345555543 34555666666666666 456665 466777777777777666 666666666666666666666555
Q ss_pred EEccCccC
Q 020113 319 EIKSSIVN 326 (331)
Q Consensus 319 ~i~~~~~~ 326 (331)
.||+.-+.
T Consensus 328 ~VGPfA~L 335 (460)
T COG1207 328 TVGPFARL 335 (460)
T ss_pred ccCCcccc
Confidence 55554443
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=91.78 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=58.3
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
..+++++.|++++.|+ ++.|+++|.|+ +++.+.++++++++.|++++.|+.+++|++++.|++++.+.++++++++.
T Consensus 34 ~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~--~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~ 110 (193)
T cd03353 34 TVIGEDCVIGPNCVIK-DSTIGDGVVIK--ASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSK 110 (193)
T ss_pred CEECCCCEECCCcEEe-CCEECCCCEEc--CCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCE
Confidence 3455555555555555 33677777777 77888889999999999999998778888888888888877666666555
Q ss_pred Ec
Q 020113 320 IK 321 (331)
Q Consensus 320 i~ 321 (331)
++
T Consensus 111 i~ 112 (193)
T cd03353 111 AN 112 (193)
T ss_pred ec
Confidence 44
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=85.14 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=41.5
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN- 310 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~- 310 (331)
++++++.|.++++|+.++.||++|.|+ .++.+. +++|+++|.||+++.|..++.|++++.|++++.|.
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~--~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~ 110 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLS--AGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ 110 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEEC--CCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcC
Confidence 455555555555555556666666665 455553 25566666666666665556666666666666553
Q ss_pred CcEEcc
Q 020113 311 GAVVLP 316 (331)
Q Consensus 311 ~~~v~~ 316 (331)
+..|++
T Consensus 111 ~~~I~~ 116 (139)
T cd03350 111 STPIYD 116 (139)
T ss_pred CeEecc
Confidence 344433
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=94.83 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=63.4
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEc----------cceEECCCcEECc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVE----------NMTILGEDVHVAD 305 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~----------~~~~i~~~~~i~~ 305 (331)
..+++++.|.+++.|..++.||++|.|+ .+|+|.. ++||++|.|+++|.|. ..|+||++|+||+
T Consensus 53 p~I~~~~~I~p~A~V~G~V~IG~~~~I~--~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~ 130 (269)
T PLN02296 53 PVVDKDAFVAPSASVIGDVQVGRGSSIW--YGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGH 130 (269)
T ss_pred CccCCCCEECCCcEEEcceEECCCCEEC--CCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECC
Confidence 3577777887777777777788888887 6677763 4789999999998885 2388999999999
Q ss_pred ccEEcCcEEccCeEEccCc
Q 020113 306 EVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 306 ~~~i~~~~v~~~~~i~~~~ 324 (331)
+++|.+|+|++++.|+.+.
T Consensus 131 ~avI~g~~Igd~v~IG~ga 149 (269)
T PLN02296 131 SAVLHGCTVEDEAFVGMGA 149 (269)
T ss_pred CceecCCEECCCcEECCCc
Confidence 8888777777777666554
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=91.40 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=51.9
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCe
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHK 318 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~ 318 (331)
.+++++.|++++.|+++++|++++.|| +++.|. +++|+++|.||.++.|+.++.++++++|++++.|. ++.+.+++
T Consensus 95 ~i~~~~~ig~~~~i~~~~~i~~~~~ig--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~ 172 (201)
T TIGR03570 95 IVSPSASIGEGTVIMAGAVINPDVRIG--DNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGV 172 (201)
T ss_pred EECCCCEECCCCEECCCCEECCCCEEC--CCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCC
Confidence 444555555555555555555555555 556663 56666666666666666666666666666666663 56666666
Q ss_pred EEccCccCC
Q 020113 319 EIKSSIVNP 327 (331)
Q Consensus 319 ~i~~~~~~~ 327 (331)
+|+++....
T Consensus 173 ~i~~~~~i~ 181 (201)
T TIGR03570 173 TIGAGAIVG 181 (201)
T ss_pred EECCCCEEC
Confidence 666665543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.7e-10 Score=95.72 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=27.2
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
|+++++|.+.+.|++++.||++|.|+ . ++.||++|.|++++.|.++++||++|.|++++.|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~--~-----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIG--P-----NVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEEC--C-----CCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 44455555544444444444444444 1 2344444444444444433444444444444444
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=90.40 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=53.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEcc----ceEECCCcEECcccEEcCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVEN----MTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~~----~~~i~~~~~i~~~~~i~~~ 312 (331)
.++++++|.++++|..++.||++|.|+ .+|+|.+ .+|+++|.||++|.|.. +|+|+++++||+++.+.++
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~--~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~ 89 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIG--PLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGC 89 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEEC--CCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeE
Confidence 355666666666655566666666666 5566643 35666666666666644 2677888888877777777
Q ss_pred EEccCeEEccCc
Q 020113 313 VVLPHKEIKSSI 324 (331)
Q Consensus 313 ~v~~~~~i~~~~ 324 (331)
+|++++.|+.+.
T Consensus 90 vIG~~v~IG~ga 101 (196)
T PRK13627 90 VIGRDALVGMNS 101 (196)
T ss_pred EECCCCEECcCC
Confidence 777777776553
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.3e-10 Score=100.09 Aligned_cols=69 Identities=33% Similarity=0.579 Sum_probs=59.8
Q ss_pred ceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEcc
Q 020113 246 SNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKS 322 (331)
Q Consensus 246 ~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 322 (331)
+.|.++++|++++.|++++.|+++ |+||++|.||.++.|.+ |+|+++|.|++++.+.+|+|+.+++|++
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~-------~~ig~~~~I~~~~~i~~-Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPY-------TVIGEGVTIGNGVEIKN-SIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCC-------cEECCCCEECCCcEEEe-eEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 556667777666666666666644 99999999999999999 9999999999999999999999999997
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=93.02 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=50.6
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEc----------cceEECCCcEECccc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVE----------NMTILGEDVHVADEV 307 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~----------~~~~i~~~~~i~~~~ 307 (331)
++.+++|.+++.+..++.||++|.|+ .+++|.+ .+||++|.|+++|.|. ..++||++|+||+++
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~--~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s 139 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVW--NGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS 139 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEc--CCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence 55556666665555556666666665 4555542 4566667776666663 237777777777777
Q ss_pred EEcCcEEccCeEEccCc
Q 020113 308 YSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 308 ~i~~~~v~~~~~i~~~~ 324 (331)
.|.+|+|++++.|+.+.
T Consensus 140 ~L~~~~Igd~v~IG~~s 156 (246)
T PLN02472 140 LLRSCTIEPECIIGQHS 156 (246)
T ss_pred EECCeEEcCCCEECCCC
Confidence 77766666666666543
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-10 Score=95.34 Aligned_cols=94 Identities=41% Similarity=0.727 Sum_probs=66.7
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCC---------CCceEeCCEEcCCCEECCCcEEcc-------------c
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------KHACISSSIIGWHSTVGRWARVEN-------------M 294 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~---------~~~~i~~s~i~~~~~ig~~~~i~~-------------~ 294 (331)
++++++++++.|+|++-||++++||+++.|-.. ++++|-+|+||.+|.||+.++++. -
T Consensus 292 hPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~ 371 (407)
T KOG1460|consen 292 HPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAAL 371 (407)
T ss_pred cCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCccee
Confidence 444555555555555555555555544333222 777888888888888888888776 2
Q ss_pred eEECCCcEECcccEEcCcEEccCeEEccCccCCcccC
Q 020113 295 TILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIVM 331 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~~ 331 (331)
+++|++|.+++.+.+.+|++-|+..+.-++.. +|+|
T Consensus 372 Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~-eIil 407 (407)
T KOG1460|consen 372 TILGADVSVEDEVIVLNSIVLPNKELNVSVQD-EIIL 407 (407)
T ss_pred EEecccceecceeEEeeeeEecCCccceeeec-ceeC
Confidence 78889999999999999999999998877766 4443
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=76.80 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=42.0
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+++++.|.++++|++++.||++|.|+ +++.|.+ ..|+++|.++.++.+..++.|++++.|++++.|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIG--PGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEEC--CCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 356666777666666667777777776 5566653 456666666666666555666666666665554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=85.81 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEccc----eEECCCcEECcccEEcCcEEc
Q 020113 244 TGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVENM----TILGEDVHVADEVYSNGAVVL 315 (331)
Q Consensus 244 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~~~~v~ 315 (331)
++++|.+.++|..++.||++|.|+ ++++|.. ++||++|.|+++|.|.+. ++|++++.|+.++.+.+++|+
T Consensus 4 ~~~~i~~~a~i~g~v~ig~~~~I~--~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 81 (153)
T cd04645 4 PSAFIAPNATVIGDVTLGEGSSVW--FGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIG 81 (153)
T ss_pred CCeEECCCCEEEEeEEECCCcEEc--CCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEEC
Confidence 333444443333334444444444 3344432 356666666666665552 366666666666555555555
Q ss_pred cCeEEcc
Q 020113 316 PHKEIKS 322 (331)
Q Consensus 316 ~~~~i~~ 322 (331)
+++.|++
T Consensus 82 ~~~~Ig~ 88 (153)
T cd04645 82 DNCLIGM 88 (153)
T ss_pred CCCEECC
Confidence 5555543
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=82.90 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=54.0
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEcc----c----eEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVEN----M----TILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~----~----~~i~~~~~i~~~~~i 309 (331)
.+++++++.|.++++|..++.||++|.|. . +| .+++|+++|.||++|+|.. + +.||++|.||.++.|
T Consensus 13 ~a~IG~GtvI~~gavV~~~a~IG~~~iIn--~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I 88 (147)
T cd04649 13 GAYLAEGTTVMHEGFVNFNAGTLGNCMVE--G--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI 88 (147)
T ss_pred CCEECCCcEECCCCEEccCCEECCCeEEC--C--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE
Confidence 34556666666666666666666666654 1 22 2466777777777776653 3 788888888888888
Q ss_pred cCcEEccCeEEccCc
Q 020113 310 NGAVVLPHKEIKSSI 324 (331)
Q Consensus 310 ~~~~v~~~~~i~~~~ 324 (331)
+..|+++++|+++.
T Consensus 89 -gv~IG~~~vIGaGs 102 (147)
T cd04649 89 -GISLGDNCIVEAGL 102 (147)
T ss_pred -eEEECCCCEECCCC
Confidence 67778888777754
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=93.61 Aligned_cols=69 Identities=29% Similarity=0.384 Sum_probs=42.0
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEECc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVAD 305 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~~ 305 (331)
.+.+++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.|+. .+.||++++|++
T Consensus 11 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e 88 (255)
T PRK12461 11 SAKLGSGVEIGPFAVIGANVEIGDGTWIG--PHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIRE 88 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEEc--cCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECC
Confidence 34555666666666666666666666666 556664 566666666666666653 255666666666
Q ss_pred ccEE
Q 020113 306 EVYS 309 (331)
Q Consensus 306 ~~~i 309 (331)
+++|
T Consensus 89 ~vtI 92 (255)
T PRK12461 89 GVTI 92 (255)
T ss_pred ccEE
Confidence 5555
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-10 Score=105.10 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=69.5
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
+..+++++.|++++.|. +++||++|.|+ ++|.|++++||++|.||++++|.++++|+++|+||+++.+.++++++++
T Consensus 287 ~~~ig~~~~I~~~~~i~-~~~i~~~~~I~--~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~ 363 (456)
T PRK14356 287 ASRIARGAVIHSHCWLR-DAVVSSGATIH--SFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGA 363 (456)
T ss_pred ceEECCCCEECCCeEEE-eeEECCCCEEe--eeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCc
Confidence 45678888888888885 78899999999 8899999999999999999999977999999999999988877777766
Q ss_pred EEccC
Q 020113 319 EIKSS 323 (331)
Q Consensus 319 ~i~~~ 323 (331)
.++..
T Consensus 364 ~i~~~ 368 (456)
T PRK14356 364 KANHL 368 (456)
T ss_pred Eeccc
Confidence 55543
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=90.09 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=61.7
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEc---------------------------
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVE--------------------------- 292 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~--------------------------- 292 (331)
..+++++.|++++.|. +++||++|.|+ .++.+.+++||++|.|++++.|.
T Consensus 20 ~~IG~~~~Ig~~a~I~-~s~IG~~s~I~--~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~ 96 (204)
T TIGR03308 20 SKLGRYTEIGERTRLR-EVALGDYSYVM--RDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASD 96 (204)
T ss_pred cEeCCCcEECCCcEEe-CCEECCCCEEC--CCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccccccccc
Confidence 3466667777767665 67777788887 77888888888888888888775
Q ss_pred ----------cceEECCCcEECcccEEc-CcEEccCeEEccCcc
Q 020113 293 ----------NMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIV 325 (331)
Q Consensus 293 ----------~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~ 325 (331)
.+++||++|.||.++.|. ++.|+++++|+++..
T Consensus 97 ~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~ 140 (204)
T TIGR03308 97 DADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAV 140 (204)
T ss_pred cccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCE
Confidence 247788888888888774 677777777776643
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=87.16 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECccc
Q 020113 239 SSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVADEV 307 (331)
Q Consensus 239 ~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~ 307 (331)
.++|+++++|.. +++|+++++||++|.|+ .++.+.. ++||++|.||.++.|.++++||++|.||+++
T Consensus 67 ~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~--~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s 144 (162)
T TIGR01172 67 GARIGRGVFIDHGTGVVIGETAVIGDDVTIY--HGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANS 144 (162)
T ss_pred CCEECCCeEECCCCeEEECCCCEECCCCEEc--CCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCC
Confidence 344555555543 35555666666666666 5555542 4677777777777777777777777777777
Q ss_pred EEcCc
Q 020113 308 YSNGA 312 (331)
Q Consensus 308 ~i~~~ 312 (331)
++.+.
T Consensus 145 ~V~~d 149 (162)
T TIGR01172 145 VVLKD 149 (162)
T ss_pred EECCC
Confidence 77653
|
Cysteine biosynthesis |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=82.21 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=47.6
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE----------------eCCEEcCCCEECCCcEEccceEECCCcE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI----------------SSSIIGWHSTVGRWARVENMTILGEDVH 302 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i----------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~ 302 (331)
...|++++.|+++++|++++.||++|.|+ .++.+ .+++|+++|.||.++.+.+++.|++++.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ 93 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIG--PNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYAL 93 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEc--CCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEECCCCE
Confidence 34556666666666666666666666666 44443 3466777777777777777677777777
Q ss_pred ECcccEEcCc
Q 020113 303 VADEVYSNGA 312 (331)
Q Consensus 303 i~~~~~i~~~ 312 (331)
|++++.+...
T Consensus 94 i~~~~~v~~~ 103 (119)
T cd03358 94 VGAGAVVTKD 103 (119)
T ss_pred EccCCEEeCc
Confidence 7777777654
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-09 Score=86.18 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=55.7
Q ss_pred ccCCCceEecceEE--cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEcc------------------ceEE
Q 020113 241 KLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVEN------------------MTIL 297 (331)
Q Consensus 241 ~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~~------------------~~~i 297 (331)
.+++++.|.+++.+ +.++.||+++.|+ .+++|. +..||++|.||++|.|.. ..+|
T Consensus 57 ~ig~~~~I~~~~~~~~g~ni~IG~~v~In--~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~I 134 (203)
T PRK09527 57 TVGENAWVEPPVYFSYGSNIHIGRNFYAN--FNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITI 134 (203)
T ss_pred hcCCCcEEcCCEEEeeCCCcEEcCCcEEC--CCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEE
Confidence 47888888888776 4678888888888 667773 367888888888887752 1567
Q ss_pred CCCcEECcccEEc-CcEEccCeEEccC
Q 020113 298 GEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 298 ~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
|++|.||.++.|. ++.|+++++|+++
T Consensus 135 Gd~v~IG~~~~I~~gv~IG~~~vIgag 161 (203)
T PRK09527 135 GNNVWIGSHVVINPGVTIGDNSVIGAG 161 (203)
T ss_pred CCCcEECCCCEEcCCCEECCCCEECCC
Confidence 7777777776663 4555555554443
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=90.33 Aligned_cols=68 Identities=26% Similarity=0.419 Sum_probs=35.2
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc-------------------ceEECCC
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN-------------------MTILGED 300 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~-------------------~~~i~~~ 300 (331)
.|+++++|+++++|++++.||++|.|+ .++.|. +++|+++|.|++++.|.. .++|+++
T Consensus 21 ~ig~~~~i~~~~~i~~~~~Ig~~~~i~--~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~ 98 (205)
T cd03352 21 VIGDGVVIGPGVVIGDGVVIGDDCVIH--PNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDD 98 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEEC--CCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCC
Confidence 344444444445554455555555555 445553 355555555555555531 2555666
Q ss_pred cEECcccEEc
Q 020113 301 VHVADEVYSN 310 (331)
Q Consensus 301 ~~i~~~~~i~ 310 (331)
+.|+.++.+.
T Consensus 99 ~~Ig~~~~i~ 108 (205)
T cd03352 99 VEIGANTTID 108 (205)
T ss_pred EEECCCCEEe
Confidence 6666666653
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=94.28 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=5.7
Q ss_pred EEcCCCEECCCcEE
Q 020113 278 IIGWHSTVGRWARV 291 (331)
Q Consensus 278 ~i~~~~~ig~~~~i 291 (331)
+||++|.|+++|+|
T Consensus 78 ~IG~~~~I~~~~~I 91 (254)
T TIGR01852 78 IIGDNNTIREFVTI 91 (254)
T ss_pred EECCCCEECCCCEE
Confidence 34444444444333
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=93.02 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=66.1
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECC--------CcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGR--------WARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~--------~~~i~~~~~i~~~~~i~~~~~i 309 (331)
...|++++.|.+++.||++|.|+++|.|+ .+++| .+|.|+.++.|.. ++.|++++.||.+++|.+++.|
T Consensus 104 ~~~I~~~~~I~~~~~IG~~~~I~~~a~I~--~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~I 181 (231)
T TIGR03532 104 NAVIMMGAVINIGAEIGEGTMIDMNAVLG--GRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRV 181 (231)
T ss_pred CCEEecCcccCCCeEECCCCEEccccccC--CCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEE
Confidence 34455556666677788888888888887 66777 4688888888864 5788888888888888888888
Q ss_pred -cCcEEccCeEEccCccCCcc
Q 020113 310 -NGAVVLPHKEIKSSIVNPEI 329 (331)
Q Consensus 310 -~~~~v~~~~~i~~~~~~~~~ 329 (331)
.+++|++++++.+++...++
T Consensus 182 g~~~~IgagsvV~~di~~~~v 202 (231)
T TIGR03532 182 GKGAVVAAGAIVTEDVPPNTV 202 (231)
T ss_pred CCCCEECCCCEEccccCCCcE
Confidence 57888888888777665543
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=92.87 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=49.2
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN- 310 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~- 310 (331)
.|++++.|.+++.|+.++.||++|.|+ .++.|. +++|+++|.||.+|.|..+++||++++|+.++.|.
T Consensus 134 ~Ig~gt~I~~~a~IG~~a~IG~nv~I~--~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~ 211 (272)
T PRK11830 134 YVDEGTMVDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQ 211 (272)
T ss_pred EECCCcEEccccEECCCCEECCCcEEC--CCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 456666666666666666666666666 445543 36777777777777776667777777777777773
Q ss_pred CcEEcc
Q 020113 311 GAVVLP 316 (331)
Q Consensus 311 ~~~v~~ 316 (331)
++.|++
T Consensus 212 gt~I~~ 217 (272)
T PRK11830 212 STKIYD 217 (272)
T ss_pred CeEECc
Confidence 566664
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-09 Score=86.63 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=64.6
Q ss_pred ccCCCceEecceEEcC----CcEECCCcEECCCCCceEe-----CCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 241 KLATGSNIIGNVLVHE----GAKIGDGCLIGPDKHACIS-----SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~----~~~i~~~~~I~~~~~~~i~-----~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
.++++++|++++.|+. ++.||++|.|+ +++.|. ++.||++|.|+.++.|.+.++||++|.||.++.|.+
T Consensus 22 ~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~--~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~ 99 (167)
T cd00710 22 IIGDNVFVGPGASIRADEGTPIIIGANVNIQ--DGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN 99 (167)
T ss_pred EECCCcEECCCcEEeCCCCCcEEECCCCEEC--CCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEEC
Confidence 3555555555555544 24677777777 677773 577899999999999988899999999999999998
Q ss_pred cEEccCeEEccCccC
Q 020113 312 AVVLPHKEIKSSIVN 326 (331)
Q Consensus 312 ~~v~~~~~i~~~~~~ 326 (331)
+.|++++.|+.+...
T Consensus 100 ~~Ig~~~~Ig~~s~i 114 (167)
T cd00710 100 AKVGDNCVIGHNAVV 114 (167)
T ss_pred CEECCCCEEcCCCEE
Confidence 889988888876543
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=92.17 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=52.3
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE-cC
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS-NG 311 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i-~~ 311 (331)
|++++.|. +++++.++.|+++|.|+ .++.|. +++||++|.|+.++.|.+ .++|+++|.||.++.| .+
T Consensus 118 Ig~gavI~-p~~V~iGa~Ig~gt~I~--~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G 194 (272)
T PRK11830 118 IAPNVVLM-PSYVNIGAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG 194 (272)
T ss_pred ECCCcEEE-EEEECCCCEECCCcEEc--cccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC
Confidence 44444444 23444566677777776 556664 467777777777776654 2678888888888877 56
Q ss_pred cEEccCeEEccCccC
Q 020113 312 AVVLPHKEIKSSIVN 326 (331)
Q Consensus 312 ~~v~~~~~i~~~~~~ 326 (331)
++|+++++|+.++..
T Consensus 195 v~IGdgavIgag~vV 209 (272)
T PRK11830 195 VIVEEGSVLGMGVFL 209 (272)
T ss_pred CEECCCCEEcCCCEE
Confidence 677777766665544
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=85.82 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=38.4
Q ss_pred cCCCceEecceEEcCC---cEECCCcEECCCCCceEeC-------------CEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 242 LATGSNIIGNVLVHEG---AKIGDGCLIGPDKHACISS-------------SIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~~~i~~-------------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
+++.+.|.++++|..+ +.||++|.|+ ++++|.. ++||+++.|++++.+.+ ++|++++.||+
T Consensus 24 ig~~~~I~~~~~I~g~~~~v~IG~~~~I~--~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~-~~Ig~~v~Ig~ 100 (161)
T cd03359 24 LNGKTIIQSDVIIRGDLATVSIGRYCILS--EGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA-AQIGSYVHIGK 100 (161)
T ss_pred ECCceEEcCCCEEeCCCcceEECCCcEEC--CCCEEeCCccccCCCccccCeEECCccEECCCCEEEe-eEEcCCcEECC
Confidence 4444444444444432 3455555555 4444432 35666666666666655 55555555555
Q ss_pred ccEE-cCcEEccCeEEc
Q 020113 306 EVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 306 ~~~i-~~~~v~~~~~i~ 321 (331)
++.| .++.|++++.|+
T Consensus 101 ~~~Ig~~~~I~~~~~i~ 117 (161)
T cd03359 101 NCVIGRRCIIKDCVKIL 117 (161)
T ss_pred CCEEcCCCEECCCcEEC
Confidence 5544 234444433333
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=100.38 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=64.3
Q ss_pred eEecceEEc---CCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC-----cEEccCe
Q 020113 247 NIIGNVLVH---EGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG-----AVVLPHK 318 (331)
Q Consensus 247 ~i~~~~~i~---~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-----~~v~~~~ 318 (331)
.|+++|.|+ .+|+||++|.|+ ++|+|++|+|+++|.||++|.|.+ |+|++++.|++++.+.+ .+|++++
T Consensus 295 ~Ig~~~~I~~~v~~s~ig~~~~I~--~~~~i~~svi~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~~~~~~~~ig~~~ 371 (380)
T PRK05293 295 LVVEGCVVYGTVEHSVLFQGVQVG--EGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIGGGKEVITVIGENE 371 (380)
T ss_pred EECCCCEEcceecceEEcCCCEEC--CCCEEECCEEeCCCEECCCeEEeE-EEECCCCEECCCCEEcCCCceeEEEeCCC
Confidence 444555554 267899999999 889999999999999999999999 99999999999999986 7888888
Q ss_pred EEccCc
Q 020113 319 EIKSSI 324 (331)
Q Consensus 319 ~i~~~~ 324 (331)
+|+++.
T Consensus 372 ~~~~~~ 377 (380)
T PRK05293 372 VIGVGT 377 (380)
T ss_pred CCCCCc
Confidence 877663
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-09 Score=92.62 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=62.3
Q ss_pred cccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 236 KNSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 236 ~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..+.++|++++.|. .+++||++++||++|.|. .+++|. ..+||++|.||.++.|.+++.||+++.||
T Consensus 208 I~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~--~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIG 285 (355)
T PLN02739 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSIL--HGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVA 285 (355)
T ss_pred cCCCccccCceEEecCCceEECCCCEECCCCEEc--CCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEEC
Confidence 45567788888885 478888888888888888 777774 36899999999999999889999999999
Q ss_pred cccEEcC
Q 020113 305 DEVYSNG 311 (331)
Q Consensus 305 ~~~~i~~ 311 (331)
.|++|..
T Consensus 286 AGSVV~k 292 (355)
T PLN02739 286 AGSLVLK 292 (355)
T ss_pred CCCEECC
Confidence 9999864
|
|
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=90.59 Aligned_cols=155 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHcC------------CCEEEEEec-cChHHHHHHH
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAVG------------VTEVVLAIN-YQPEVMLNFL 64 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~g------------i~~i~iv~~-~~~~~i~~~~ 64 (331)
|.+|+||||.|+||+ ...||+|+|++ |+|++++.++++...+ +..+ +.++ +..+.+++++
T Consensus 16 va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~-imtS~~t~~~t~~~~ 91 (323)
T cd04193 16 VAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWY-IMTSEATHEETRKFF 91 (323)
T ss_pred EEEEEECCCcccccC---CCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEE-EEcChhHhHHHHHHH
Confidence 458999999999994 47899999997 7999999999998842 4444 5555 6678899999
Q ss_pred HHhhhccCe---EEEEeeCC---------------------cccCChHHHHH-----HHhhccCCCCCcEEEEeCCeecc
Q 020113 65 KEFEKKLEI---KITCSQET---------------------EPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISE 115 (331)
Q Consensus 65 ~~~~~~~~~---~v~~~~~~---------------------~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~~ 115 (331)
++ .+.++. .+.+..|. .|.|.++-... .++.+....-+++.+.+.|.+.-
T Consensus 92 ~~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~ 170 (323)
T cd04193 92 KE-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILV 170 (323)
T ss_pred Hh-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccc
Confidence 87 233333 34433321 24566553322 23333333333899999999543
Q ss_pred -ccHHHHHHHHhhcCCceEEE---ec-CCCCceEEEE-cCCcCceeEeeecC
Q 020113 116 -YPLKQMIEFHRGRGGEASIM---VD-EPSKYGVVVM-EETTGKVEKFVEKP 161 (331)
Q Consensus 116 -~~l~~~l~~~~~~~~~~~i~---~~-~~~~~~~v~~-d~~~~~v~~~~ek~ 161 (331)
..-..++-.+.+.+.++.+- .. ..+.-|.+.. |.. -.+.++.|-|
T Consensus 171 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~ 221 (323)
T cd04193 171 KVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEIS 221 (323)
T ss_pred cccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCC
Confidence 33456777777888887765 22 2344555444 332 3455665544
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=79.38 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=58.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
.|++++.|+ ++.|. ++.|+++|.|+ +++.|.+|++++++.||.++.+.+ |+|++++.|++++.+.+.
T Consensus 14 ~Ig~~~~I~-~~~I~-~svi~~~~~Ig--~~~~I~~siI~~~~~Ig~~~~i~~-siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 14 LVSEGCIIS-GGTVE-NSVLFRGVRVG--SGSVVEDSVIMPNVGIGRNAVIRR-AIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred EECCCCEEc-CeEEE-eCEEeCCCEEC--CCCEEEEeEEcCCCEECCCCEEEe-EEECCCCEECCCCEECCC
Confidence 356666666 66664 78889999999 889999999999999999999987 999999999999999765
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=93.26 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=56.2
Q ss_pred ccCCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.+.|+++.+|.. +++||++++||++|.|. .+++|. +++||++|.||.++.|.+++.||++++||.
T Consensus 230 ~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~--~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 230 HPGAKIGQGILLDHATGVVIGETAVVGNNVSIL--HNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred CCCCEECCCeEECCCCceEECCCCEECCCCEEe--CCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECC
Confidence 44555666666654 56677777777777777 556663 378999999999999977799999999999
Q ss_pred ccEEcC
Q 020113 306 EVYSNG 311 (331)
Q Consensus 306 ~~~i~~ 311 (331)
+++|.+
T Consensus 308 gSVV~~ 313 (360)
T PLN02357 308 GSVVLK 313 (360)
T ss_pred CCEECc
Confidence 999863
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=102.46 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=58.5
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
..|++++.|++++.|. ++.|+++|.|+ +++.|.+++|+++|.||++++|.++++|+++|+||+++.+.++.|+.++
T Consensus 280 ~~ig~~~~I~~~~~i~-~~~i~~~~~I~--~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~ 355 (451)
T TIGR01173 280 VKIGDDVVIGPGCVIK-NSVIGSNVVIK--AYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGS 355 (451)
T ss_pred eEECCCCEECCCcEEe-eeEecCCCEEe--eecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCc
Confidence 4455666666666554 56777778887 7788888999999999999999977999999999888877766666543
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=87.74 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=55.8
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+++.+.|++.+.|. ++.||++|.|+ ++|+|.+++||++|+|+.+|.+.+ ++||++|.|++++.+.
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig--~~a~I~~s~IG~~s~I~~~~~i~~-~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIG--ERTRLREVALGDYSYVMRDCDIIY-TTIGKFCSIAAMVRIN 69 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEEC--CCcEEeCCEECCCCEECCCcEEee-eEECCCCEECCCCEEC
Confidence 56778888888885 68999999999 889999999999999999999887 8888888888887663
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=87.35 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=41.0
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN 293 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~ 293 (331)
.+.+++++++.|+|.|+|++++.||++++|+ ++++|+ .+.||.++.|.+++.|+.
T Consensus 13 e~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~--shvvv~G~T~IG~~n~I~~~A~iG~ 68 (260)
T COG1043 13 EPGAEIGEDVKIGPFCIIGPNVEIGDGTVLK--SHVVVEGHTTIGRNNRIFPFASIGE 68 (260)
T ss_pred CCCCCcCCCCEECceEEECCCcEECCCcEEc--ccEEEeCCeEECCCCEEecccccCC
Confidence 3456677777778888888888888888887 777776 477777777777777665
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-09 Score=85.09 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=64.8
Q ss_pred CccCCCceEecceEEcC------------CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECccc
Q 020113 240 SKLATGSNIIGNVLVHE------------GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEV 307 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~------------~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~ 307 (331)
..+++++.|+++++|.. ++.||++|.|+ +++.+.+++|++++.||+++.|+.+++|+++++|++++
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig--~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~ 120 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIG--ENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGT 120 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEEC--CCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCC
Confidence 45677777777777764 35788888888 88999889999999999999998889999999999998
Q ss_pred EE-cCcEEccCeEEc
Q 020113 308 YS-NGAVVLPHKEIK 321 (331)
Q Consensus 308 ~i-~~~~v~~~~~i~ 321 (331)
++ .++.+.+++++.
T Consensus 121 ~V~~~~~i~~~~vv~ 135 (161)
T cd03359 121 VVPPDTVIPPYSVVS 135 (161)
T ss_pred EECCCCEeCCCCEEe
Confidence 88 467777777775
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=91.65 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=54.3
Q ss_pred ccCCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.++|++++.|.. +++||++++||++|.|. .++++. +++||++|.||.++.|.+++.||++++||.
T Consensus 164 ~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~--~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 164 HPAAKIGKGILFDHATGVVIGETAVIGNNVSIL--HHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred CCcceecCCEEEeCCCCeEECCCcEECCCCEEe--ecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence 33455666666654 56666677777777776 555553 468999999999999977799999999999
Q ss_pred ccEEcC
Q 020113 306 EVYSNG 311 (331)
Q Consensus 306 ~~~i~~ 311 (331)
++++..
T Consensus 242 gSVV~k 247 (294)
T PLN02694 242 GSVVLI 247 (294)
T ss_pred CCEECC
Confidence 999863
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=94.96 Aligned_cols=67 Identities=30% Similarity=0.387 Sum_probs=61.0
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
..++.||+|.+.+ .+|+|+.++.|+ ++|+|++|+|+++|.||++|+|++ ++|.+||.|++|++|.+.
T Consensus 297 SLv~~GciI~G~V---~nSVL~~~v~I~--~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 297 SLVAGGCIISGTV---ENSVLFRGVRIG--KGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeCCeEEEeEE---EeeEEecCeEEC--CCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence 3478888888833 399999999999 999999999999999999999999 999999999999999766
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-07 Score=84.59 Aligned_cols=304 Identities=13% Similarity=0.154 Sum_probs=168.3
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHHc----C--CCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G--VTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
+|.||||.|+||+- ..||.++++ .|+++++..++++... | +--+++.+....+++.++++++.. .+..+
T Consensus 82 vlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~-~~~~i 157 (469)
T PLN02474 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN-SNIEI 157 (469)
T ss_pred EEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC-Cccce
Confidence 68889999999998 789999999 5789999988877653 3 334444444556889999988431 22222
Q ss_pred EEeeC------------------------CcccCChHHHH---HH--HhhccCCCCCcEEEEeCCeeccccHHHHHHHHh
Q 020113 76 TCSQE------------------------TEPLGTAGPLA---LA--RDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR 126 (331)
Q Consensus 76 ~~~~~------------------------~~~~G~~~al~---~~--~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~ 126 (331)
.+..| ..|.|.++-.. .. ++.+....-+++.+.+.|.+...-=..++.++.
T Consensus 158 ~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~ 237 (469)
T PLN02474 158 HTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLI 237 (469)
T ss_pred EEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHH
Confidence 22111 12445544322 11 333333333499999999964433346777778
Q ss_pred hcCCceEEE----ecCCCCceEEEE-cCCcCceeEeeecCCCC--------CCCeEEEEEEEEChhhHhhc-ccC-----
Q 020113 127 GRGGEASIM----VDEPSKYGVVVM-EETTGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRI-ELK----- 187 (331)
Q Consensus 127 ~~~~~~~i~----~~~~~~~~~v~~-d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l-~~~----- 187 (331)
+++++.++- .....+-|.+.. +.. -++.++.+-|++. .-.+.+++.+.|+-+.++.+ +..
T Consensus 238 ~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~ 316 (469)
T PLN02474 238 QNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
T ss_pred hcCCceEEEEeecCCCCCCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhcCCCCce
Confidence 888887766 122233454443 332 3467776655421 23578999999999888765 111
Q ss_pred ----CC--------CcccchHHHHHhcCcEEEEEe-CceEEecCCHHHHHHHHHHHHhhhcc---ccCC-ccCCCceEec
Q 020113 188 ----PT--------SIEKEVFPEIAAENKLFAMVL-PGFWMDIGQPKDYITGLRLYLDFLQK---NSSS-KLATGSNIIG 250 (331)
Q Consensus 188 ----~~--------~~~~~~l~~l~~~~~i~~~~~-~~~~~~i~t~~d~~~a~~~~l~~~~~---~~~~-~i~~~~~i~~ 250 (331)
.. .+|..+...+---.+..++.+ ...|..+-+.+|++.+...+..-... ..+. ..+...
T Consensus 317 ~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~~p---- 392 (469)
T PLN02474 317 IIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPSNP---- 392 (469)
T ss_pred eecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCCCC----
Confidence 00 111111111111122333333 23478888888888777766544321 1111 111111
Q ss_pred ceEEcCC-cEECCCcEE--CCCCCceEe--CCEEcCCCEECCCcEEccceEECCC----cEECcccEEcCcEEccC
Q 020113 251 NVLVHEG-AKIGDGCLI--GPDKHACIS--SSIIGWHSTVGRWARVENMTILGED----VHVADEVYSNGAVVLPH 317 (331)
Q Consensus 251 ~~~i~~~-~~i~~~~~I--~~~~~~~i~--~s~i~~~~~ig~~~~i~~~~~i~~~----~~i~~~~~i~~~~v~~~ 317 (331)
.+.+++. ..+++...= + --+.++ .-.|..+++.|.++++.+.++|-.+ ..|-+|+++.+.+|.++
T Consensus 393 ~IeL~~~f~~v~~f~~rf~~--iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 393 SIELGPEFKKVANFLSRFKS--IPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred cEEECcccccHHhHHHhcCC--CCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecceeeccc
Confidence 1122211 011111100 1 112222 2346677788888888776666544 47888999888777665
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-09 Score=90.92 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=43.8
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECC------------CcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGE------------DVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~------------~~~i~ 304 (331)
+.+.|++++.|++++.|+++++|+++++|| +++.|. +++|..++.||.++.|..+++|+. .+.||
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG--~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIG--DGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEC--CCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 344455555555555555555555555555 556553 556666666666666666566654 45566
Q ss_pred cccEEc-CcEEcc
Q 020113 305 DEVYSN-GAVVLP 316 (331)
Q Consensus 305 ~~~~i~-~~~v~~ 316 (331)
+++.|. ++.|..
T Consensus 82 ~~~~I~e~vtI~~ 94 (255)
T PRK12461 82 DRNVIREGVTIHR 94 (255)
T ss_pred CceEECCccEEec
Confidence 666663 455543
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-09 Score=91.38 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=53.0
Q ss_pred cCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 238 SSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 238 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
+.++|++++.|. .+++||.+++||++|.|. .+++|. ..+||++|.||.+|.|.+++.||++++||+|
T Consensus 146 ~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~--~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAg 223 (273)
T PRK11132 146 PAAKIGRGIMLDHATGIVIGETAVIENDVSIL--QSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAG 223 (273)
T ss_pred CcceECCCeEEcCCCCeEECCCCEECCCCEEc--CCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCC
Confidence 344555555554 245666667777777776 556664 2688999999999999999999999999999
Q ss_pred cEEcC
Q 020113 307 VYSNG 311 (331)
Q Consensus 307 ~~i~~ 311 (331)
+++.+
T Consensus 224 SvV~~ 228 (273)
T PRK11132 224 SVVLQ 228 (273)
T ss_pred CEECc
Confidence 98864
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=101.02 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=59.5
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
..+++++.|+++++|. +++|+++|.|+ +++.|.+|+|+++|.||+++.|..++++++++.||+++.++++.++.++.
T Consensus 284 v~ig~~~~I~~~~~i~-~~~ig~~~~I~--~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~ 360 (456)
T PRK09451 284 VTLGNRVKIGAGCVLK-NCVIGDDCEIS--PYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSK 360 (456)
T ss_pred cEECCCCEECCCceEe-cCEEcCCCEEc--CCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCc
Confidence 4566667777777764 67778888888 77888889999999999999998778888888888887776555544444
Q ss_pred Ec
Q 020113 320 IK 321 (331)
Q Consensus 320 i~ 321 (331)
++
T Consensus 361 ~~ 362 (456)
T PRK09451 361 AG 362 (456)
T ss_pred cC
Confidence 33
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-09 Score=99.30 Aligned_cols=63 Identities=29% Similarity=0.465 Sum_probs=37.3
Q ss_pred CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEcc
Q 020113 257 GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKS 322 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 322 (331)
+++||++|.|| .++.|. +|+||++|.||++|.+.+ ++|++++.+++++.+.++.|++++.|+.
T Consensus 303 ~~~Ig~~~~Ig--~~~~i~~~~~ig~~~~Ig~~~~i~~-~~i~~~~~i~~~~~i~~~~ig~~~~Ig~ 366 (446)
T PRK14353 303 GAHVGEGAEVG--PYARLRPGAELGEGAKVGNFVEVKN-AKLGEGAKVNHLTYIGDATIGAGANIGA 366 (446)
T ss_pred ccEECCCcEEC--CCeEEeccceecCCeEEcCceEEec-eEECCCCEECCeeEEcCcEEcCCcEECC
Confidence 56677777777 667775 677777777777776654 5555554444444444444444444433
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-09 Score=101.49 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=51.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
.|++++.|+++++|+ +++|+++|.|+ ++++|.+++|+++|.||+++.+..+++||+++.|++++.|.+++|+.++
T Consensus 290 ~Ig~~~~I~~~~~i~-~svI~~~~~I~--~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~ 364 (481)
T PRK14358 290 RVADGVTIGAYSVVT-DSVLHEGAVIK--PHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGV 364 (481)
T ss_pred EECCCCEECCCCEEe-eeEECCCCEEe--ecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCc
Confidence 355555555555553 45667777777 6777778888888888888888766888888888887665544443333
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=84.34 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=57.7
Q ss_pred CCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEcc---------------ceEEC
Q 020113 239 SSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVEN---------------MTILG 298 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~~---------------~~~i~ 298 (331)
.+++++++.|.+++.|.. +..||++|.|+ +++.|. ..+||++|.|+.+++|.. ..+||
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig--~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Ig 128 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIG--DDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIG 128 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEEC--CCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEc
Confidence 356778888887777653 57777777777 667774 467888888887777632 14677
Q ss_pred CCcEECcccEE-cCcEEccCeEEccCc
Q 020113 299 EDVHVADEVYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 299 ~~~~i~~~~~i-~~~~v~~~~~i~~~~ 324 (331)
++|.||.++.| .++.|+++++|+++.
T Consensus 129 d~~~Ig~~a~I~~Gv~Ig~~~vIga~s 155 (182)
T PRK10502 129 EGCWLAADVFVAPGVTIGSGAVVGARS 155 (182)
T ss_pred CCcEEcCCCEEcCCCEECCCCEECCCC
Confidence 77777777777 466666666666443
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=98.11 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=60.1
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVL 315 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~ 315 (331)
+..|++++.|+++++|+ +++||++|+|+ .+|++.+|+|+++|.||+++++..++.|+++++||+++.+.+++|+
T Consensus 286 ~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~--~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig 359 (459)
T PRK14355 286 DTRIGEGCTIEQGVVIK-GCRIGDDVTVK--AGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMG 359 (459)
T ss_pred CCEECCCCEECCCCEEe-CCEEcCCCEEC--CCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEEC
Confidence 45567777777777775 68888888888 8899999999999999999999988999999999888765554433
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=88.38 Aligned_cols=180 Identities=18% Similarity=0.259 Sum_probs=110.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHHc--------------CCCEEEEEeccChHHHHHH
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------------GVTEVVLAINYQPEVMLNF 63 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~--------------gi~~i~iv~~~~~~~i~~~ 63 (331)
|.+||||||.|+||+. ..||+|+|| .|+||++++++++... .+..+++.+.+..+.++++
T Consensus 107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF 183 (482)
T ss_pred eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence 4689999999999975 889999999 4899999999999874 2455555566777889999
Q ss_pred HHHhhhccCe---EEEEeeC----------------------CcccCChHHHHH-----HHhhccCCCCCcEEEEeCCee
Q 020113 64 LKEFEKKLEI---KITCSQE----------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVI 113 (331)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~----------------------~~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i 113 (331)
+.+. ..++. .+.+..| ..|.|.++-... .++.+....-+++.+...|.+
T Consensus 184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 262 (482)
T PTZ00339 184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262 (482)
T ss_pred HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence 9862 12221 1222111 124566553332 133443333338999999997
Q ss_pred cccc-HHHHHHHHhhcCC-ceEEE---ecCCCCceEEEEcCCcCceeEeeecCCCC-------C----CCeEEEEEEEEC
Q 020113 114 SEYP-LKQMIEFHRGRGG-EASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNF-------V----GNKINAGIYLLN 177 (331)
Q Consensus 114 ~~~~-l~~~l~~~~~~~~-~~~i~---~~~~~~~~~v~~d~~~~~v~~~~ek~~~~-------~----~~~~~~Giy~~~ 177 (331)
.... -..++-++.+.+. ++... ..+.+.-|++......-.+.++.|-++.. . -...++...+|+
T Consensus 263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs 342 (482)
T PTZ00339 263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS 342 (482)
T ss_pred cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence 4433 3456666666666 44332 22334556655433212466666643211 0 134577888899
Q ss_pred hhhHhhc
Q 020113 178 PSVLDRI 184 (331)
Q Consensus 178 ~~~l~~l 184 (331)
-++++.+
T Consensus 343 l~fl~~~ 349 (482)
T PTZ00339 343 LDFLKKV 349 (482)
T ss_pred HHHHHHH
Confidence 8888654
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=75.37 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
..+++++.|+++++|++++.||++|.|+ . .|.+|+|++++.++.++.|++ ++||+++.||+++...+
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig--~--~i~~svi~~~~~i~~~~~lg~-siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIG--G--EVEDSIIEGYSNKQHDGFLGH-SYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEEC--C--EECccEEcCCCEecCcCEEee-eEECCCCEECCCceecc
Confidence 3445555555555555555555555555 2 456788888888888888876 88888888888877654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=86.54 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=12.7
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEc
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~ 321 (331)
.+||++|.||.|+.| .++.|+.+++|+
T Consensus 194 p~IGd~V~IGaga~Ilggv~IG~~a~IG 221 (273)
T PRK11132 194 PKIREGVMIGAGAKILGNIEVGRGAKIG 221 (273)
T ss_pred CEECCCcEEcCCCEEcCCCEECCCCEEC
Confidence 455555555555554 233444444444
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=75.80 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=43.6
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceEe--------------------CCEEcCCCEECCCcEEccceEEC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS--------------------SSIIGWHSTVGRWARVENMTILG 298 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~--------------------~s~i~~~~~ig~~~~i~~~~~i~ 298 (331)
++++++.|++++.|.. ++.||++|.|+ +++.|. +++||++|.||.++.+..++.|+
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig 80 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIG--PNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIG 80 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEEC--CCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEEC
Confidence 3555555555555554 55555555555 444442 45566666666666665556666
Q ss_pred CCcEECcccEEcCcEEccCeEE
Q 020113 299 EDVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 299 ~~~~i~~~~~i~~~~v~~~~~i 320 (331)
++++|+.++.+.. .+.++.++
T Consensus 81 ~~~~i~~~~~v~~-~i~~~~i~ 101 (109)
T cd04647 81 DGAVVGAGSVVTK-DVPPNSIV 101 (109)
T ss_pred CCCEECCCCEEee-ECCCCCEE
Confidence 6666666666653 23344333
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.1e-09 Score=85.90 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=49.3
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+.|+|++.|++++.|++++.||+.|+||++ ..|++++.|+++++|.+.+.||++++|.+.+.|
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~-------V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~i 66 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPN-------VEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASI 66 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCC-------cEECCCcEEcccEEEeCCeEECCCCEEeccccc
Confidence 3568888888888888888888888888844 667777777777777777777777777776655
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=82.51 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=44.6
Q ss_pred ccCCCceEecceEEc--CCcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.++++++|.++++|. .+..||++|.|+ +++.|. .++||++|+||.++.|..++.||+
T Consensus 64 ~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig--~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 64 HIGDNFYANFNCTILDVAPVTIGDNVLIG--PNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred EECCCceEcCCEEEeccCcEEECCCCEEC--CCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 355555555555443 244566666666 445552 467777777777777776677777
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
+|+||.++++.+.
T Consensus 142 ~~~VgagavV~~~ 154 (169)
T cd03357 142 NSVIGAGSVVTKD 154 (169)
T ss_pred CCEECCCCEEccc
Confidence 7777777777664
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-08 Score=81.91 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=80.7
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
|||+|.|.++|+.. |.|.+++|+|||+|+++.+.+++ +++|+|.+. .+++.+.+.++ +..+......
T Consensus 2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~~----g~~v~~~~~~ 69 (217)
T PF02348_consen 2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEEY----GAKVIFRRGS 69 (217)
T ss_dssp EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHHT----TSEEEE--TT
T ss_pred EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHHc----CCeeEEcChh
Confidence 79999999999955 99999999999999999999986 789888775 34456666654 4566555443
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCc
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGE 131 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~ 131 (331)
.. ....+...+......+..+.++.+.||.. ....+.++++.+.+...+
T Consensus 70 ~~-~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 70 LA-DDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SS-SHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hc-CCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 33 33344444444444333336778888993 345589999999888765
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=78.56 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=52.8
Q ss_pred ccCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEEC-CCcEEccceEECCCcEECcccEE-cC
Q 020113 237 NSSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVG-RWARVENMTILGEDVHVADEVYS-NG 311 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig-~~~~i~~~~~i~~~~~i~~~~~i-~~ 311 (331)
.....|++++.|++++.|+. +++|++++.|| +++.|. +++||+..... ..+.|+++|.||.++.|..++.| .+
T Consensus 39 ~~g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IG--d~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~ 116 (146)
T PRK10191 39 FFGYEIQAAATIGRRFTIHHGYAVVINKNVVAG--DDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN 116 (146)
T ss_pred HhCcccCCCCEECCCeEECCCCeEEECCCcEEC--CCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC
Confidence 34556788888888888887 57777777777 545442 34444332211 11344555555555555555555 35
Q ss_pred cEEccCeEEccCccCCc
Q 020113 312 AVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 312 ~~v~~~~~i~~~~~~~~ 328 (331)
+++++++++..++...+
T Consensus 117 ~~Igags~V~~dv~~~~ 133 (146)
T PRK10191 117 VTVGAGSVVLDSVPDNA 133 (146)
T ss_pred CEECCCCEECCccCCCc
Confidence 66666777666665543
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=75.06 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=48.7
Q ss_pred ccCCCceEecceEEc--CCcEECCCcEECCCCCceE----------------eCCEEcCCCEECCCcEEccceEECCCcE
Q 020113 241 KLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACI----------------SSSIIGWHSTVGRWARVENMTILGEDVH 302 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i----------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~ 302 (331)
.+++++.|+++++|. ....||++|.|+ +++.| ....|+++|+||.++.|..++.|++++.
T Consensus 5 ~iG~~~~I~~~~~i~~~~~i~IG~~~~I~--~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~ 82 (107)
T cd05825 5 TIGDNSWIGEGVWIYNLAPVTIGSDACIS--QGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAV 82 (107)
T ss_pred EECCCCEECCCCEEeeCCceEECCCCEEC--CCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCE
Confidence 456666666666654 245666666666 44444 2467888888888888887788888888
Q ss_pred ECcccEEcCcE
Q 020113 303 VADEVYSNGAV 313 (331)
Q Consensus 303 i~~~~~i~~~~ 313 (331)
|++++.+.+.+
T Consensus 83 i~~gs~v~~~~ 93 (107)
T cd05825 83 VGARSVVVRDL 93 (107)
T ss_pred ECCCCEEeCcC
Confidence 88888887653
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=87.21 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=35.2
Q ss_pred CCEEcCCCEECCCcEE----ccc----eEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 276 SSIIGWHSTVGRWARV----ENM----TILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i----~~~----~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+++||++|.||.+|+| .++ +.||++|.||.|+.| +..|+++++|+.+...
T Consensus 224 GavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavV 281 (341)
T TIGR03536 224 GVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYI 281 (341)
T ss_pred CCEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE-eeEECCCCEECCCCEE
Confidence 4555555555555555 345 778888888888888 7788888888877654
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=95.18 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
+..++++|.|+ ++.|. +|+||++|.|+ ++|.|++|+|+++|.||.+|+|.+ |+|+++++|++++++.+
T Consensus 315 ~~~ig~~~~I~-~~~i~-~svIg~~~~I~--~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 315 DSLVSAGSIIS-GATVR-NSVLSPNVVVE--SGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV 382 (407)
T ss_pred eCEEcCCCEEC-CeeeE-cCEECCCCEEC--CCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence 35678888887 77776 69999999999 899999999999999999999999 99999999999999966
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=83.10 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=34.4
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
+++++.|.+.++|++++.||++|.|+ .++.| .++.||++|.|++++.|..+++|+++|.|++++.|
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~--~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIG--PGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 44555555555555555555555555 44444 24555555555555555555555555555555544
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=77.38 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=15.5
Q ss_pred cCCcEECCCcEECCCCCceEeC-C--EEcCCCEECCCcEE
Q 020113 255 HEGAKIGDGCLIGPDKHACISS-S--IIGWHSTVGRWARV 291 (331)
Q Consensus 255 ~~~~~i~~~~~I~~~~~~~i~~-s--~i~~~~~ig~~~~i 291 (331)
|.+..||+++.|+ .+++|-+ + .||++|.|+++|++
T Consensus 71 g~~i~iG~~~~in--~~~~i~d~~~I~IGd~v~I~~~v~i 108 (183)
T PRK10092 71 GYNIFLGNNFYAN--FDCVMLDVCPIRIGDNCMLAPGVHI 108 (183)
T ss_pred cCCcEEcCCcEEC--CceEEecCceEEECCCCEECCCCEE
Confidence 3444444444444 3344322 1 45555555555554
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-08 Score=69.48 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=40.0
Q ss_pred ECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccc--------eEECCCcEECcccEE-cCcEEccCeEEccCc
Q 020113 260 IGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENM--------TILGEDVHVADEVYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~--------~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~ 324 (331)
||++|.|+ +++.|. +++||++|.|++++.|.+. ++|++++.|+.++.+ .++.|++++.|+++.
T Consensus 3 ig~~~~i~--~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s 75 (78)
T cd00208 3 IGEGVKIH--PKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGA 75 (78)
T ss_pred ECCCeEEC--CCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCc
Confidence 34444444 334443 3666677777777776653 677777777777777 357777777777654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=79.12 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=18.0
Q ss_pred eEECCCcEECcccEEc-------CcEEccCeEEccCccCCc
Q 020113 295 TILGEDVHVADEVYSN-------GAVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~ 328 (331)
++||++|.||.++.+. +++|+.+++|.+++.+.+
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~ 154 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGA 154 (162)
T ss_pred CEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCC
Confidence 4566666666666553 444444455555554443
|
Cysteine biosynthesis |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=85.85 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=60.2
Q ss_pred ccCCccCCCceEecceEEcCCc-EECCCcEECCCCCceE-eCCEEcCCCEECCCcE----Eccc----eEECCCcEECcc
Q 020113 237 NSSSKLATGSNIIGNVLVHEGA-KIGDGCLIGPDKHACI-SSSIIGWHSTVGRWAR----VENM----TILGEDVHVADE 306 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~-~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~----i~~~----~~i~~~~~i~~~ 306 (331)
+..+++++|+.|.+.++|..++ .||+. .|+ ++| ++|+||++|.|++++. +.++ +.||++|.||.|
T Consensus 163 RlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI~----g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGag 237 (319)
T TIGR03535 163 RLGAHLAEGTTVMHEGFVNFNAGTLGAS-MVE----GRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGAN 237 (319)
T ss_pred eeccEECCCCEEcCCCEEccCceEecCc-eEE----EEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCC
Confidence 3455666777777777776666 56664 443 566 4788888888888888 4447 888999999999
Q ss_pred cEEcCcEEccCeEEccCcc
Q 020113 307 VYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 307 ~~i~~~~v~~~~~i~~~~~ 325 (331)
+.| +..|+++++|+.+..
T Consensus 238 A~I-GI~IGd~~VVGAGaV 255 (319)
T TIGR03535 238 SGL-GISLGDDCVVEAGLY 255 (319)
T ss_pred CEE-CeEECCCCEECCCCE
Confidence 988 777778887777654
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=95.15 Aligned_cols=64 Identities=25% Similarity=0.452 Sum_probs=51.9
Q ss_pred cEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 258 AKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
++||++|.|+ +++.|. +++||++|.||.++.|.+ ++|++++.+++.+.+.+++|+.++.|+.++
T Consensus 317 ~~ig~~~~Ig--~~~~i~~~~~Ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~ 381 (458)
T PRK14354 317 SKVGDNVTVG--PFAHLRPGSVIGEEVKIGNFVEIKK-STIGEGTKVSHLTYIGDAEVGENVNIGCGT 381 (458)
T ss_pred CEECCCcEEC--CceEecCCCEEeCCcEECCceEEee-eEECCCCEecceeeecCcccCCceEEcCce
Confidence 4566677777 667776 788888888888888887 889999999998888888888888887664
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-08 Score=85.22 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=43.4
Q ss_pred cCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcE
Q 020113 238 SSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAV 313 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~ 313 (331)
....|++++.|+++++|+. +++||++|+|| ++++|. ++++|.. +..+..++ ++||++|.||.|+.| .++.
T Consensus 159 ~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IG--dnv~I~~~VtLGg~---g~~~~~r~-piIGd~V~IGagA~Ilggi~ 232 (294)
T PLN02694 159 FAVDIHPAAKIGKGILFDHATGVVIGETAVIG--NNVSILHHVTLGGT---GKACGDRH-PKIGDGVLIGAGATILGNVK 232 (294)
T ss_pred eeEEeCCcceecCCEEEeCCCCeEECCCcEEC--CCCEEeecceeCCc---ccccCCCc-cEECCCeEECCeeEECCCCE
Confidence 3456788888888888875 67788888887 556553 4444431 11222222 455555555555444 3344
Q ss_pred EccCeEEcc
Q 020113 314 VLPHKEIKS 322 (331)
Q Consensus 314 v~~~~~i~~ 322 (331)
|+++++|++
T Consensus 233 IGd~a~IGA 241 (294)
T PLN02694 233 IGEGAKIGA 241 (294)
T ss_pred ECCCCEECC
Confidence 444444433
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=94.49 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=35.6
Q ss_pred CCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 270 KHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 270 ~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
.++.+. +++|++++.||.++.+.+ ++|+++++|+..+.+.+++|+.++.|+.+.
T Consensus 333 ~~~~i~~~~vIg~~~~ig~~~~~~~-~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~ 387 (482)
T PRK14352 333 PFTYLRPGTVLGEEGKLGAFVETKN-ATIGRGTKVPHLTYVGDADIGEHSNIGASS 387 (482)
T ss_pred CCeEecCCcEEcCCCEECCcEEEcc-cEECCCcEEccCceecccEECCCcEECCCc
Confidence 444443 455555666665555555 777788888777777777777777777653
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-08 Score=72.52 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=17.3
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
++|+++|.|+.++.+..++.|+++++|++++.+.
T Consensus 55 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 55 PTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred CEECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 3455555555555555545555555555555544
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=81.90 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=53.1
Q ss_pred CCccCCCceEecceEEc--CCcEECCCcEECCCCCceEe----------------------------CCEEcCCCEECCC
Q 020113 239 SSKLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACIS----------------------------SSIIGWHSTVGRW 288 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i~----------------------------~s~i~~~~~ig~~ 288 (331)
...+++++.|++++.|. .++.||++|.|+ +++.|. .++||++|.||.+
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig--~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~ 142 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIA--SKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGEN 142 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEEC--CCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCC
Confidence 34566666666666665 355666666666 444443 2568888888888
Q ss_pred cEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 289 ARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 289 ~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
+.|..+++||++|+||+++++.+. +.++++
T Consensus 143 ~~i~~g~~Ig~~~~Iga~s~v~~~-i~~~~~ 172 (192)
T PRK09677 143 VTILPGVSIGNGCIVGANSVVTKS-IPENTV 172 (192)
T ss_pred CEEcCCCEECCCCEECCCCEECcc-cCCCcE
Confidence 888877888888888888888764 444443
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-09 Score=89.74 Aligned_cols=94 Identities=36% Similarity=0.616 Sum_probs=79.8
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCC---------CCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccE
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVY 308 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~---------~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~ 308 (331)
+.+.++++|.|+++++||++++|++++.|... ..+.|..+++|.++.||.+++|.++++||+||+|.+.-.
T Consensus 269 ~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~ 348 (371)
T KOG1322|consen 269 SIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDY 348 (371)
T ss_pred cccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccc
Confidence 45567888888888888888888887766533 566667789999999999999999999999999999999
Q ss_pred EcCcEEccCeEEccCccCCcccC
Q 020113 309 SNGAVVLPHKEIKSSIVNPEIVM 331 (331)
Q Consensus 309 i~~~~v~~~~~i~~~~~~~~~~~ 331 (331)
++...+-+...+...+..+.++|
T Consensus 349 vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 349 VNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred cccceeEEeccceeecccccccC
Confidence 99888888888888888888776
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.6e-07 Score=72.90 Aligned_cols=186 Identities=15% Similarity=0.258 Sum_probs=114.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh--HHHHHHHHHhhhccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKKLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~v~~ 77 (331)
|-++|+.|-+||.-.| -|.|+|++++|||.++|+.+.++. ++++++.++.+. ..++.++.+. |..+
T Consensus 3 ~I~~IiQARmgStRLp-----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G~~v-- 71 (241)
T COG1861 3 MILVIIQARMGSTRLP-----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----GFYV-- 71 (241)
T ss_pred cEEEEeeecccCccCC-----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----CeeE--
Confidence 3467777776644334 499999999999999999999986 788988887543 5677777662 3333
Q ss_pred eeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeec-cc-cHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCcee
Q 020113 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 78 ~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~-~~-~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~ 155 (331)
.......-.+.+..+.+....+ .++=+.||.-+ .. -++.+++.|.+++++-+-. . +.
T Consensus 72 -frGs~~dVL~Rf~~a~~a~~~~---~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~------------~---~~-- 130 (241)
T COG1861 72 -FRGSEEDVLQRFIIAIKAYSAD---VVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSN------------T---GA-- 130 (241)
T ss_pred -ecCCHHHHHHHHHHHHHhcCCC---eEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccc------------c---CC--
Confidence 2223333445566666666553 66679999943 33 3788999999888742111 0 11
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccC-CCCc-ccchHHHHHhcCcEEEEEe---------CceEEecCCHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-PTSI-EKEVFPEIAAENKLFAMVL---------PGFWMDIGQPKDYI 224 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-~~~~-~~~~l~~l~~~~~i~~~~~---------~~~~~~i~t~~d~~ 224 (331)
...++.-+++...|+..... .... ....-+++-.+.+++...+ +++-..++|.+||-
T Consensus 131 ------------p~G~~vEV~~a~~L~~a~k~~~e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD~~ 198 (241)
T COG1861 131 ------------PLGTDVEVMKARALKKAAKEALEAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQEDFA 198 (241)
T ss_pred ------------ccccceeeeehHHHHHhHhhccchhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHHHH
Confidence 22355667777777655221 1111 1122233333333332221 44667899999998
Q ss_pred HHHHHH
Q 020113 225 TGLRLY 230 (331)
Q Consensus 225 ~a~~~~ 230 (331)
.++..+
T Consensus 199 ~~~~vy 204 (241)
T COG1861 199 LAKAVY 204 (241)
T ss_pred HHHHHH
Confidence 886654
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-08 Score=75.24 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=47.4
Q ss_pred CccCCCceEecceEEc----CCcEECCCcEECCCCCceEe-----C----CEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 240 SKLATGSNIIGNVLVH----EGAKIGDGCLIGPDKHACIS-----S----SIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~----~~~~i~~~~~I~~~~~~~i~-----~----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
+.+..++.|+.++.|. .++.|+++|.|+ +++.|. + ..||++|+||.++.| + ..||++++||+|
T Consensus 26 avV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG--~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I-g-v~IG~~~vIGaG 101 (147)
T cd04649 26 GFVNFNAGTLGNCMVEGRISSGVIVGKGSDVG--GGASIMGTLSGGGNNVISIGKRCLLGANSGI-G-ISLGDNCIVEAG 101 (147)
T ss_pred CEEccCCEECCCeEECCcccCCEEECCCCEEC--CCCEEEEECCCCcccCEEECCCCEECCCCEE-e-EEECCCCEECCC
Confidence 3455566666666665 667777777777 556553 2 578888888888888 4 888888888888
Q ss_pred cEEc
Q 020113 307 VYSN 310 (331)
Q Consensus 307 ~~i~ 310 (331)
+++.
T Consensus 102 svV~ 105 (147)
T cd04649 102 LYVT 105 (147)
T ss_pred CEEe
Confidence 8774
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=77.42 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=49.7
Q ss_pred ccCCCceEecceEE--cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEc------------------cceEE
Q 020113 241 KLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVE------------------NMTIL 297 (331)
Q Consensus 241 ~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~------------------~~~~i 297 (331)
.+++++.|.+++.+ +.++.||++|.|+ .+++|. +.+||++|.|+++|+|. ..++|
T Consensus 44 ~~~~~~~i~~~~~~~~~~~i~IG~~v~I~--~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~I 121 (169)
T cd03357 44 SVGENVYIEPPFHCDYGYNIHIGDNFYAN--FNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITI 121 (169)
T ss_pred ccCCCCEEcCCEEEEeCCcCEECCCceEc--CCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEe
Confidence 35666777666543 4567777777777 556663 35677777777777773 23566
Q ss_pred CCCcEECcccEE-cCcEEccCeEEccC
Q 020113 298 GEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 298 ~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
|++|.||.++.| .++.|+++++|+.+
T Consensus 122 G~~~~Ig~~a~I~~gv~Ig~~~~Vgag 148 (169)
T cd03357 122 GDNVWIGGGVIILPGVTIGDNSVIGAG 148 (169)
T ss_pred CCCEEECCCCEEeCCCEECCCCEECCC
Confidence 666666666665 34455555444443
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-08 Score=79.51 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=45.2
Q ss_pred cCCCceEecceEEcCCc--EECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECCC
Q 020113 242 LATGSNIIGNVLVHEGA--KIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGED 300 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~--~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~~ 300 (331)
++++++|..+++|++.+ .||++|.|+ .++.+. ...||++|+||.+|.|..++.||++
T Consensus 76 iG~~~~in~~~~i~d~~~I~IGd~v~I~--~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~ 153 (183)
T PRK10092 76 LGNNFYANFDCVMLDVCPIRIGDNCMLA--PGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDN 153 (183)
T ss_pred EcCCcEECCceEEecCceEEECCCCEEC--CCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCC
Confidence 44444454445444433 566666776 445552 3567888888888888777888888
Q ss_pred cEECcccEEcCc
Q 020113 301 VHVADEVYSNGA 312 (331)
Q Consensus 301 ~~i~~~~~i~~~ 312 (331)
++|+.++++.+.
T Consensus 154 ~vIgagsvV~~d 165 (183)
T PRK10092 154 VVVASGAVVTKD 165 (183)
T ss_pred CEECCCCEEccc
Confidence 888888877654
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-08 Score=92.97 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=60.9
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
...|+++|.| +++.|. +|+|+++|.|+ ++|.|++|+|+++|.||++|+|.+ |+|+++|.|++++.|..
T Consensus 327 ~s~i~~~~~i-~~~~i~-~svi~~~~~I~--~~~~i~~svi~~~~~I~~~~~i~~-~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR-RSVLFSRVRVN--SFSNVEDSVLLPDVNVGRSCRLRR-CVIDRGCVIPEGMVIGE 394 (425)
T ss_pred eCEEcCCcEE-cCcccc-CCEECCCCEEC--CCCEEeeeEEcCCCEECCCCEEee-EEECCCCEECCCCEECC
Confidence 3567888888 677776 79999999999 899999999999999999999998 99999999999988863
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=70.47 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=38.3
Q ss_pred cCCCceEecceEEcC--CcEECCCcEECCCCCceEeCCEEcCCCEECCCcE---EccceEECCCcEECcccEEc-CcEEc
Q 020113 242 LATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWAR---VENMTILGEDVHVADEVYSN-GAVVL 315 (331)
Q Consensus 242 i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~---i~~~~~i~~~~~i~~~~~i~-~~~v~ 315 (331)
+++++.|+++++|+. +++|++++.|+ + ++.|++++.|+.++. +.. ++|++++.|+.++.+. ++.|+
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig--~-----~~~i~~~~~i~~~~~~~~~~~-~~Ig~~~~Ig~~~~i~~~~~Ig 76 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIG--D-----NCTIYQGVTLGGKGKGGGKRH-PTIGDNVVIGAGAKILGNITIG 76 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEEC--C-----CCEEcCCCEECCCccCCcCCC-CEECCCcEEcCCCEEECcCEEC
Confidence 455555555555544 34455555555 3 344455555555553 333 5666666666666553 24455
Q ss_pred cCeEEccC
Q 020113 316 PHKEIKSS 323 (331)
Q Consensus 316 ~~~~i~~~ 323 (331)
++++|+++
T Consensus 77 ~~~~i~~~ 84 (101)
T cd03354 77 DNVKIGAN 84 (101)
T ss_pred CCCEECCC
Confidence 44444433
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=91.72 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=53.6
Q ss_pred CceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 245 GSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 245 ~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
+.++.+++.|..++.||++|.|+ .++.|.+|+|+++|.|+. +.+.+ |+||++++|++++.|.+|.|+++++|+.++
T Consensus 253 ~~~~~~~~~i~g~~~ig~~~~I~--~~~~i~~~~i~~~~~I~~-~~i~~-~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~ 328 (430)
T PRK14359 253 TIYIESGVEFEGECELEEGVRIL--GKSKIENSHIKAHSVIEE-SIIEN-SDVGPLAHIRPKSEIKNTHIGNFVETKNAK 328 (430)
T ss_pred eeEECCCcEEcCceEECCCCEEC--CCeEEEeeEECCCCEEec-cEEeC-CEECCCCEECCCcEEeccEEcCcEEEcccE
Confidence 45566777777777777777777 667777777777777765 55555 777777777777777777777777665544
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-08 Score=89.94 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=54.5
Q ss_pred ceEecceEEcC----CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 246 SNIIGNVLVHE----GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 246 ~~i~~~~~i~~----~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
+.|+++|.|++ +++|+++|.|+ ++|.|.+|+|++++.||++|+|.+ |+||++++|+.++.|.+
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~--~~~~i~~sii~~~~~v~~~~~l~~-~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIG--SGSTVEDSVIMGDVGIGRGAVIRN-AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEEC--CCCEEeeeEEeCCCEECCCCEEee-eEECCCCEECCCCEeCC
Confidence 44555555555 89999999999 889999999999999999999988 99999999999998754
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.7e-08 Score=90.58 Aligned_cols=71 Identities=27% Similarity=0.383 Sum_probs=59.9
Q ss_pred ceEecceEEc---CCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 246 SNIIGNVLVH---EGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 246 ~~i~~~~~i~---~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
+.|+++|.|+ .+|+|+++|.|+ ++|.|++|+++++|.|+.++++.+ |+|+++++|++++.+.+..+.|.++
T Consensus 290 ~~Ig~~~~i~~~v~~s~i~~~~~I~--~~~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~~~~~~~~~ 363 (369)
T TIGR02092 290 SLVANGCIIEGKVENSILSRGVHVG--KDALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAGTSEQPLVI 363 (369)
T ss_pred eEEcCCCEEeeEEeCCEECCCCEEC--CCCEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCCCCCccEEE
Confidence 3444555554 367889999999 899999999999999999999999 9999999999999998876666554
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-08 Score=92.69 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=13.8
Q ss_pred cCCCceEecceEEcCCcEECCCcEEC
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIG 267 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~ 267 (331)
+++++.|++++.|+++++||++|.|+
T Consensus 316 ig~~~~I~~~~~I~~~~~Ig~~~~Ig 341 (450)
T PRK14360 316 IGDGVKIGPYAHLRPEAQIGSNCRIG 341 (450)
T ss_pred ccCCcEECCCCEECCCCEEeCceEEC
Confidence 44455555555555555555555555
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-08 Score=92.41 Aligned_cols=54 Identities=13% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 270 KHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 270 ~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
+++.|. +++||++|.||+++.+.+ ++|++++.+++.+.+.+++|+.++.|++++
T Consensus 317 ~~~~i~~~~~ig~~~~Ig~~~~i~~-~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~ 371 (448)
T PRK14357 317 PFSRLREGTVLKKSVKIGNFVEIKK-STIGENTKAQHLTYLGDATVGKNVNIGAGT 371 (448)
T ss_pred CCcEECCcccccCCcEecCceeeec-cEEcCCcCccccccccCcEECCCcEECCCc
Confidence 444553 466666666676666665 677777766666666667777777776654
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.8e-08 Score=84.82 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=27.7
Q ss_pred ccCCccCCCceEecceEEc--CCcEECCCcEECCCCCceE-eCCEEc
Q 020113 237 NSSSKLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACI-SSSIIG 280 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i-~~s~i~ 280 (331)
.....|++++.|+++++|+ .+++||++|+|| +++.| .+++||
T Consensus 203 ~~GidI~p~A~IG~Gv~IdHg~GVVIG~~avIG--dnv~I~~gVTIG 247 (355)
T PLN02739 203 VFGIDIHPAARIGKGILLDHGTGVVIGETAVIG--DRVSILHGVTLG 247 (355)
T ss_pred HhCcccCCCccccCceEEecCCceEECCCCEEC--CCCEEcCCceeC
Confidence 4456678888888888885 377777777777 55555 244443
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=75.71 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=48.0
Q ss_pred ccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.++|+++.+|. .+++||+.++||++|.|- .+++|- .=.||+|+.||.++.|-++-.||+|+.||+
T Consensus 71 hp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~--~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA 148 (194)
T COG1045 71 HPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIY--HGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGA 148 (194)
T ss_pred CCCCeECCceEEcCCceEEEcceeEECCCeEEE--cceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECC
Confidence 4444455544443 245555555555555555 344442 236888888888888888788899999999
Q ss_pred ccEEcCc
Q 020113 306 EVYSNGA 312 (331)
Q Consensus 306 ~~~i~~~ 312 (331)
|+++.+.
T Consensus 149 ~sVVlkd 155 (194)
T COG1045 149 GSVVLKD 155 (194)
T ss_pred CceEccC
Confidence 9888653
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-08 Score=90.06 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=59.4
Q ss_pred CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECC-------------------CcEECcccEEcCcEEccC
Q 020113 257 GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGE-------------------DVHVADEVYSNGAVVLPH 317 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~-------------------~~~i~~~~~i~~~~v~~~ 317 (331)
++.||++|.| +++.|++|+||++|.||++|.|.+ |+|++ ++.||++|.|.+|+|+++
T Consensus 308 ~~~ig~~~~i---~~~~i~~svi~~~~~Ig~~~~i~~-svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 383 (429)
T PRK02862 308 ESIIAEGCII---KNCSIHHSVLGIRSRIESGCTIED-TLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN 383 (429)
T ss_pred eCEECCCCEE---CCcEEEEEEEeCCcEECCCCEEEe-eEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC
Confidence 5788888888 348888999999999999999999 99976 699999999999999999
Q ss_pred eEEccCccCC
Q 020113 318 KEIKSSIVNP 327 (331)
Q Consensus 318 ~~i~~~~~~~ 327 (331)
+.|++++...
T Consensus 384 ~~i~~~~~~~ 393 (429)
T PRK02862 384 ARIGNNVRIV 393 (429)
T ss_pred cEECCCcEEe
Confidence 9999887653
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=78.13 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=49.8
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|..++.|.+ ++.||++|.|+ +++.|. ..+||++|+||.++.|..++.||+
T Consensus 77 ~IG~~v~In~~~~I~d~~~I~IGd~v~Ig--~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~ 154 (203)
T PRK09527 77 HIGRNFYANFNLTIVDDYTVTIGDNVLIA--PNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_pred EEcCCcEECCCcEEecCCCEEECCCCEEC--CCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECC
Confidence 3555555555554422 35667777777 445553 267999999999999998899999
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
++.||.++++.+.
T Consensus 155 ~~vIgagsvV~kd 167 (203)
T PRK09527 155 NSVIGAGSVVTKD 167 (203)
T ss_pred CCEECCCCEEccc
Confidence 9999999998653
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-07 Score=73.69 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=63.1
Q ss_pred CCCCCceeCC--cchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 21 VPKPLVDFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 21 ~pK~llpi~g--~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
.+|+|+++.| +|||+|+++.+.. .+++++|+++.... +.. .+..+. .......|...++..++....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~~~-----~~~----~~~~~i-~d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPGQP-----LPE----LPAPVL-RDELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCCcc-----ccc----CCCCEe-ccCCCCCCcHHHHHHHHHHHH
Confidence 4899999999 9999999998775 48999999875421 111 122332 223334577777776665432
Q ss_pred CCCCCcEEEEeCCe--eccccHHHHHHHHhh
Q 020113 99 DDSGEPFFVLNSDV--ISEYPLKQMIEFHRG 127 (331)
Q Consensus 99 ~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~ 127 (331)
....+.++|++||+ +....+..+++.+.+
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 11223899999999 334457788876543
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=77.08 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred cCCCceEecceEE----cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEcc---------------------
Q 020113 242 LATGSNIIGNVLV----HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVEN--------------------- 293 (331)
Q Consensus 242 i~~~~~i~~~~~i----~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~~--------------------- 293 (331)
+++++.+..++.+ .....||++|.|+ .++.|. +++||++|.|++++.|.+
T Consensus 46 iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig--~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~ 123 (192)
T PRK09677 46 FGEGFTSGVGLRLDAFGRGKLFFGDNVQVN--DYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDM 123 (192)
T ss_pred ECCceEECCCeEEEecCCCeEEECCCCEEC--CCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhh
Confidence 4555555555555 2355666666666 555553 467888888887777753
Q ss_pred ------ceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 294 ------MTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 294 ------~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
.++||++|.||.++.+. ++.|+++++|+++.
T Consensus 124 ~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 124 RTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANS 161 (192)
T ss_pred cccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCC
Confidence 14677777777777663 55566555555544
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=77.43 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=44.7
Q ss_pred cCCCceEecceEEc--CCcEECCCcEECCCCCceE----------------eCCEEcCCCEECCCcEEccceEECCCcEE
Q 020113 242 LATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACI----------------SSSIIGWHSTVGRWARVENMTILGEDVHV 303 (331)
Q Consensus 242 i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i----------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~i 303 (331)
|++++.|++++.|. .++.||++|.|+ .++.| ...+||++|.||.++.|..++.||+++.|
T Consensus 74 IG~~~~Ig~~~~I~~~~~v~IG~~~~I~--~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI 151 (182)
T PRK10502 74 IGDYAWIGDDVWLYNLGEITIGAHCVIS--QKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV 151 (182)
T ss_pred ECCCeEECCCceecccCceEECCCcEEC--CCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence 45555555555443 234555555555 44444 12478888888888888777888888888
Q ss_pred CcccEEcC
Q 020113 304 ADEVYSNG 311 (331)
Q Consensus 304 ~~~~~i~~ 311 (331)
++++++.+
T Consensus 152 ga~svV~~ 159 (182)
T PRK10502 152 GARSSVFK 159 (182)
T ss_pred CCCCEEec
Confidence 88888764
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=80.29 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=16.4
Q ss_pred eEECCCcEECcccE-EcCcEEccCeEEccCc
Q 020113 295 TILGEDVHVADEVY-SNGAVVLPHKEIKSSI 324 (331)
Q Consensus 295 ~~i~~~~~i~~~~~-i~~~~v~~~~~i~~~~ 324 (331)
++|++||.||.+++ +.++.++++++|..++
T Consensus 183 v~IgdncliGAns~~veGV~vGdg~VV~aGv 213 (271)
T COG2171 183 VIIGDNCLIGANSEVVEGVIVGDGCVVAAGV 213 (271)
T ss_pred eEECCccEeccccceEeeeEeCCCcEEecce
Confidence 55666666666653 3455555555554443
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=87.55 Aligned_cols=63 Identities=19% Similarity=0.437 Sum_probs=39.8
Q ss_pred cEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECC----------------C---cEECcccEEcCcEEccCe
Q 020113 258 AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGE----------------D---VHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~----------------~---~~i~~~~~i~~~~v~~~~ 318 (331)
|+|+++|.|+ ++.|++|+|+++|.||++|.|.+ |++++ + ++||+++.+.+++|++++
T Consensus 316 s~I~~~~~I~---~~~I~~svI~~~~~Ig~~~~I~~-sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v 391 (436)
T PLN02241 316 SIISHGCFLR---ECKIEHSVVGLRSRIGEGVEIED-TVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNA 391 (436)
T ss_pred eEEcCCcEEc---CeEEEeeEEcCCCEECCCCEEEE-eEEECCCccccccccccccccCCcceEECCCCEEcceEecCCC
Confidence 5566666664 26666677777777777777777 44433 2 267777776666666666
Q ss_pred EEccCc
Q 020113 319 EIKSSI 324 (331)
Q Consensus 319 ~i~~~~ 324 (331)
.|++++
T Consensus 392 ~Ig~~~ 397 (436)
T PLN02241 392 RIGKNV 397 (436)
T ss_pred EECCCc
Confidence 666554
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-07 Score=81.66 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=42.1
Q ss_pred cCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcE
Q 020113 238 SSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAV 313 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~ 313 (331)
....|++++.|+.+++|.. +++||++|+|| ++++|. +++||.. |.....+ +++||++|.||.|+.| .+..
T Consensus 225 f~vdI~p~a~IG~Gv~Idh~~giVIGe~avIG--dnV~I~~gVtIGg~---g~~~g~~-~piIGd~V~IGagA~IlggV~ 298 (360)
T PLN02357 225 FAVDIHPGAKIGQGILLDHATGVVIGETAVVG--NNVSILHNVTLGGT---GKQSGDR-HPKIGDGVLIGAGTCILGNIT 298 (360)
T ss_pred hceeeCCCCEECCCeEECCCCceEECCCCEEC--CCCEEeCCceecCc---cccCCcc-CceeCCCeEECCceEEECCeE
Confidence 3456777777777777764 56777777777 445553 3444332 0001111 2555555555555554 3444
Q ss_pred EccCeEEccC
Q 020113 314 VLPHKEIKSS 323 (331)
Q Consensus 314 v~~~~~i~~~ 323 (331)
||++++|+.+
T Consensus 299 IGdga~IGAg 308 (360)
T PLN02357 299 IGEGAKIGAG 308 (360)
T ss_pred ECCCCEECCC
Confidence 5555555443
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.4e-08 Score=72.98 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=47.3
Q ss_pred EECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 259 KIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
.||+.+.|+ ++|++....||..+.+|.++.|+++|+|-++|.|.+++++. .+.+.|..+++.+
T Consensus 86 hiGdhVFie--E~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 86 HIGDHVFIE--EECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred eecceEEEe--cceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCC
Confidence 344444444 77777777788888888888888888888888888888884 6777777777643
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=84.63 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=37.9
Q ss_pred ceEeCCEEcCCCEECCC-cEEccceEECCCcEECcccEEc---CcEEccCeEEc
Q 020113 272 ACISSSIIGWHSTVGRW-ARVENMTILGEDVHVADEVYSN---GAVVLPHKEIK 321 (331)
Q Consensus 272 ~~i~~s~i~~~~~ig~~-~~i~~~~~i~~~~~i~~~~~i~---~~~v~~~~~i~ 321 (331)
|.|.+|+|+++|.|+.+ +.+.+ +++++++.|++++.+. +.++|.+++|+
T Consensus 300 ~~i~~s~i~~~~~i~~~~~~~~~-~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 300 AEVEHSIVLDESVIEGVQARIVD-SVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred eEEEeeEEcCCCEEcCCcceeec-CEEcCCCEECCCcccccccceEEcCCceec
Confidence 44557888888888877 47776 9999999999998886 36777777764
|
Alternate name: dTDP-D-glucose synthase |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.53 E-value=5e-07 Score=71.28 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEE
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i 320 (331)
+++||++|.||.+|.|..++.||++|+||++++|... +.+++++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~-v~~~~v~ 116 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD-VPPYAIV 116 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc-cCCCeEE
Confidence 5889999999999999877999999999999988754 3444443
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-07 Score=66.35 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=14.9
Q ss_pred eEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
+.||++|.|+.++.+. ++.|+++++|+++
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~g 86 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGAR 86 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 5566666666655552 4444444444433
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.7e-07 Score=77.14 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=20.9
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+.||++|.||.++.| + ..||++|+||.|++|.
T Consensus 251 V~IGe~~lIGagA~I-G-I~IGd~~iIGAGavVt 282 (341)
T TIGR03536 251 ISVGEGCLLGANAGI-G-IPLGDRCTVEAGLYIT 282 (341)
T ss_pred EEECCCcEECCCCEE-e-eEECCCCEECCCCEEe
Confidence 456666666666666 3 6666777777766663
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=65.79 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=16.2
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
++||++|.|++++.+ .++.|++++.++++
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~ 88 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGAG 88 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 556666666666655 35555555555443
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=69.94 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=110.4
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHHc----C--CCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G--VTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
+|+||||.|+||+- ..||.++|+ .|+++++..++++... | +--++..+....+++.++++++... +..+
T Consensus 6 vl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~-~~~v 81 (300)
T cd00897 6 VLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGV-NVDI 81 (300)
T ss_pred EEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCC-ccCe
Confidence 68889999999976 789999999 4779999999988652 3 4445555555668899999884311 1111
Q ss_pred EEee------------------------CCcccCChHHHHH-----HHhhccCCCCCcEEEEeCCeeccccHHHHHHHHh
Q 020113 76 TCSQ------------------------ETEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR 126 (331)
Q Consensus 76 ~~~~------------------------~~~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~ 126 (331)
.+.. ...|.|.++-... .++.+....-+++.+.+.|.+...-=..++..+.
T Consensus 82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~~ 161 (300)
T cd00897 82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMV 161 (300)
T ss_pred EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHHH
Confidence 1111 1124455443221 1223322223399999999965433346778888
Q ss_pred hcCCceEEE-e---cCCCCceEEEE-cCCcCceeEeeecCCCC--------CCCeEEEEEEEEChhhHhhc
Q 020113 127 GRGGEASIM-V---DEPSKYGVVVM-EETTGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRI 184 (331)
Q Consensus 127 ~~~~~~~i~-~---~~~~~~~~v~~-d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l 184 (331)
++++++++- + ...++-|.+.. +.. -++.++.|-|.+. .-.+.+++...|+-+.++.+
T Consensus 162 ~~~~~~~~evv~Kt~~dek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 162 DNKAEYIMEVTDKTRADVKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred hcCCceEEEEeecCCCCCcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 888888775 2 22234454444 432 3466776655421 22477888889998877654
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=73.72 Aligned_cols=70 Identities=27% Similarity=0.369 Sum_probs=50.5
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE----e-----CCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI----S-----SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i----~-----~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+.++.+++|..++.+|..+.||+||-|| .++.| + -.+|++||.||.|+.+..++.+|++|.|+.|++|
T Consensus 138 gA~~~~gtMVd~~as~G~~a~VGkn~hig--gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I 215 (271)
T COG2171 138 GAGTGEGTMVDGRASVGSCAQVGKNSHIG--GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFI 215 (271)
T ss_pred CcccCcceEEeeeeeeeccEEECCCcccC--CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEE
Confidence 44567777777666666556666666665 44444 3 2679999999999866666999999999999888
Q ss_pred c
Q 020113 310 N 310 (331)
Q Consensus 310 ~ 310 (331)
.
T Consensus 216 ~ 216 (271)
T COG2171 216 T 216 (271)
T ss_pred e
Confidence 5
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=72.88 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=40.0
Q ss_pred eEEcCCcEECCCcEECCCCCce----Ee-C----CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 252 VLVHEGAKIGDGCLIGPDKHAC----IS-S----SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 252 ~~i~~~~~i~~~~~I~~~~~~~----i~-~----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+.|+.+|+||++|.|+ .++. +. + ..||++|.||.+|.| + ..||++|+||.|+++.
T Consensus 194 g~I~HdvvIGd~~~Ig--pGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-G-I~IGd~~VVGAGaVVt 257 (319)
T TIGR03535 194 GRISAGVVVGDGSDIG--GGASIMGTLSGGGKEVISIGERCLLGANSGL-G-ISLGDDCVVEAGLYVT 257 (319)
T ss_pred EEEccCCEECCCCEEC--CCceecceecCCCcccEEECCCcEECCCCEE-C-eEECCCCEECCCCEEe
Confidence 5566677777777777 5566 32 2 678888888888888 4 7888888888888774
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.6e-06 Score=65.75 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=41.1
Q ss_pred ccCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEE--ccceEECCCcEECcccEE-cC
Q 020113 237 NSSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARV--ENMTILGEDVHVADEVYS-NG 311 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i--~~~~~i~~~~~i~~~~~i-~~ 311 (331)
.....|++++.|+++.+|+- +.+||+.++|| ++++| -++++||..-.= ..+-.||++|+||+|+.| .+
T Consensus 65 ~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IG--ddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~ 137 (194)
T COG1045 65 LFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIG--DDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGN 137 (194)
T ss_pred hcceeeCCCCeECCceEEcCCceEEEcceeEEC--CCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcc
Confidence 34456777777777777763 34555555555 33333 222222211110 113577777777777766 34
Q ss_pred cEEccCeEEcc
Q 020113 312 AVVLPHKEIKS 322 (331)
Q Consensus 312 ~~v~~~~~i~~ 322 (331)
-.|++|+.||+
T Consensus 138 I~IGd~akIGA 148 (194)
T COG1045 138 IEIGDNAKIGA 148 (194)
T ss_pred eEECCCCEECC
Confidence 44444444443
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-06 Score=81.16 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=47.2
Q ss_pred cCCccCCCceEecceEEcCC-cEECCCcEECCCCCceE------------eCCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEG-AKIGDGCLIGPDKHACI------------SSSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~-~~i~~~~~I~~~~~~~i------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..++|++++.|.+...++.+ +.||++|.|+ +++.| .+++||++|.||.+|.|..++.||++++||
T Consensus 596 lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~--~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig 673 (695)
T TIGR02353 596 LGVKIGRGVYIDGTDLTERDLVTIGDDSTLN--EGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLG 673 (695)
T ss_pred CCCEECCCeEECCeeccCCCCeEECCCCEEC--CCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEEC
Confidence 44567777777664333222 3555555555 44544 246677777777777776667777777777
Q ss_pred cccEEc-CcEEccCe
Q 020113 305 DEVYSN-GAVVLPHK 318 (331)
Q Consensus 305 ~~~~i~-~~~v~~~~ 318 (331)
.++.+. +..+.+++
T Consensus 674 ~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 674 PDSLVMKGEEVPAHT 688 (695)
T ss_pred CCCEEcCCcccCCCC
Confidence 776664 33444443
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=50.33 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=18.3
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
++|+++|+|++++.|.+++.|++++.|++++.|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4455555555555555555555555555555553
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.2e-06 Score=66.79 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=44.6
Q ss_pred ceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 251 NVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 251 ~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
+++||+.++||++|.|. ++..+. .-.||+||.||.+++|-++..||++++|++|+++..
T Consensus 168 gvvigeTAvvg~~vSil--H~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSIL--HPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred ceeecceeEeccceeee--cceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 45566666666666665 333332 247999999999999999999999999999999853
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.8e-05 Score=71.30 Aligned_cols=77 Identities=18% Similarity=0.389 Sum_probs=49.2
Q ss_pred cEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEEEEcCCcC---------ceeEeeecCCCC-----
Q 020113 104 PFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVVVMEETTG---------KVEKFVEKPKNF----- 164 (331)
Q Consensus 104 ~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v~~d~~~~---------~v~~~~ek~~~~----- 164 (331)
-++|+.+|+++...-...+ .+.+ ++++++ .+-.++.|++..|++ + .+..+..||...
T Consensus 55 Gv~V~s~D~vl~~~~~~~~-~~~~--~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLI-DWDE--PGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccC-CCCC--CCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhC
Confidence 7899999954332212222 2333 444444 333578899999988 6 678888887521
Q ss_pred ------CCCeEEEEEEEEChhhHhhc
Q 020113 165 ------VGNKINAGIYLLNPSVLDRI 184 (331)
Q Consensus 165 ------~~~~~~~Giy~~~~~~l~~l 184 (331)
..-..++|++.|+.+..+.+
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHH
Confidence 12366899999998876654
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00024 Score=59.13 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEe
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~ 109 (331)
-+|||+|+++.+...++++++++++. +++.++... +++.+ +.+.. .|...++..+++.+.... +.+++++
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~--i~~~~-~G~~~si~~al~~~~~~~-~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPV--LRDPG-PGLNNALNAALAEAREPG-GAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEE--EecCC-CCHHHHHHHHHHHhhccC-CeEEEEe
Confidence 57999999999999887888888763 334444333 23433 33333 389999999998875432 2799999
Q ss_pred CCe--eccccHHHHHHHHh
Q 020113 110 SDV--ISEYPLKQMIEFHR 126 (331)
Q Consensus 110 ~D~--i~~~~l~~~l~~~~ 126 (331)
||+ +....++++++.+.
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 999 45566888888664
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0003 Score=70.91 Aligned_cols=198 Identities=12% Similarity=0.123 Sum_probs=112.6
Q ss_pred cEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEEEEcCCc-CceeEeeecCCC--------CCCCeE
Q 020113 104 PFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVVVMEETT-GKVEKFVEKPKN--------FVGNKI 169 (331)
Q Consensus 104 ~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v~~d~~~-~~v~~~~ek~~~--------~~~~~~ 169 (331)
.++|..||.+... ++.+... ..++++.+ .+-.++.|++..|.++ +++..+..||.. ...-+.
T Consensus 154 g~li~~gDv~~~f--~~~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~ 229 (974)
T PRK13412 154 HTLIASGDVYIRS--EQPLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM 229 (974)
T ss_pred ceEEEecchhhhc--cccccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence 5788888874322 1111111 12333333 2334678888887652 457777788752 123488
Q ss_pred EEEEEEEChhhHhhcc-c-----CCCCcccc----hHHHHHhc----------CcEEEEEe-CceEEecCCHHHHHHHHH
Q 020113 170 NAGIYLLNPSVLDRIE-L-----KPTSIEKE----VFPEIAAE----------NKLFAMVL-PGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 170 ~~Giy~~~~~~l~~l~-~-----~~~~~~~~----~l~~l~~~----------~~i~~~~~-~~~~~~i~t~~d~~~a~~ 228 (331)
++|+|+|+.+..+.|. . ....-+++ |+..|-.+ -++...+. ++.|+.++|-.+|+....
T Consensus 230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~ 309 (974)
T PRK13412 230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL 309 (974)
T ss_pred eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence 9999999998877551 1 11111223 33322111 12333443 457999999999996544
Q ss_pred HHHhhh--cccc-CCccCCCceEecceEEcCCcEECCCcEECCCCCce-EeCCEEcCCCEECCCcEEccceE-ECCCcEE
Q 020113 229 LYLDFL--QKNS-SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHAC-ISSSIIGWHSTVGRWARVENMTI-LGEDVHV 303 (331)
Q Consensus 229 ~~l~~~--~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~-i~~s~i~~~~~ig~~~~i~~~~~-i~~~~~i 303 (331)
.+.+.. ++.. ..++.+ .+.+++ .|++++.++.++ +++. |++|.|+.+..||.+|.|.+ +- ..-+.+|
T Consensus 310 ~~q~~~~~~~~i~~~~~~~----~~~~~v-~ns~~~~~~s~~--~~s~~vE~s~l~~~~~ig~~~Iisg-v~~~~~~~~v 381 (974)
T PRK13412 310 AVQNLVTDQRRIMHRKVKP----HPAMFV-QNAVLSGKLTAE--NATLWIENSHVGEGWKLASRSIITG-VPENSWNLDL 381 (974)
T ss_pred hHHHHhhhhhhhhccccCC----CCceEE-EeeEecCCcccC--CCeEEEEeeEecCCeEEcCCcEEec-ccccccceec
Confidence 433332 1110 011111 112222 488888889898 6655 78899999999999999988 53 2234677
Q ss_pred CcccEEcCcE
Q 020113 304 ADEVYSNGAV 313 (331)
Q Consensus 304 ~~~~~i~~~~ 313 (331)
-+++.+...-
T Consensus 382 P~~~ci~~vp 391 (974)
T PRK13412 382 PEGVCIDVVP 391 (974)
T ss_pred CCCcEEEEEE
Confidence 7777765433
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00033 Score=64.89 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=106.6
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHH------cCCCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKA------VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~------~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
+++||||.|+||+- ..||.++|+ .++++++..++++.. ..+--+++.+....++++++++++.. .+.++
T Consensus 59 vl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg-~~~~v 134 (420)
T PF01704_consen 59 VLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFG-LDVDV 134 (420)
T ss_dssp EEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCG-SSCCE
T ss_pred EEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcC-CCcce
Confidence 57799999999987 789999999 466899988887775 23555666666667899999998432 11122
Q ss_pred EEeeC-----------------C------c---ccCChHH--HHH---HHhhccCCCCCcEEEEeCCeeccccHHHHHHH
Q 020113 76 TCSQE-----------------T------E---PLGTAGP--LAL---ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEF 124 (331)
Q Consensus 76 ~~~~~-----------------~------~---~~G~~~a--l~~---~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~ 124 (331)
.+..| . . |.|.++- .+. .++.+....-+++.+.+.|.+...-=..++..
T Consensus 135 ~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~ 214 (420)
T PF01704_consen 135 FFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGY 214 (420)
T ss_dssp EEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHH
T ss_pred EEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHH
Confidence 21111 0 0 3355542 222 22333333334999999999554433467778
Q ss_pred HhhcCCceEEE----ecCCCCceEEEEcCCcCceeEeeecCCC--------CCCCeEEEEEEEEChhhHhhc
Q 020113 125 HRGRGGEASIM----VDEPSKYGVVVMEETTGKVEKFVEKPKN--------FVGNKINAGIYLLNPSVLDRI 184 (331)
Q Consensus 125 ~~~~~~~~~i~----~~~~~~~~~v~~d~~~~~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l 184 (331)
+.++++++.+- ......-|++...+..-++.++.+-|.+ ....+.++|--.|+-+.++.+
T Consensus 215 ~~~~~~~~~~evv~Kt~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 215 MIEKNADFGMEVVPKTSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHTT-SEEEEEEE-CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHhccchhheeeeecCCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 88888887665 2223455655543321335555544322 123567888889998888765
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-05 Score=59.41 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=12.8
Q ss_pred cCCCceEec-ceEEcC-CcEECCCcEEC
Q 020113 242 LATGSNIIG-NVLVHE-GAKIGDGCLIG 267 (331)
Q Consensus 242 i~~~~~i~~-~~~i~~-~~~i~~~~~I~ 267 (331)
+++.+.|++ .+.++. .+.||++|.|+
T Consensus 4 iG~~s~i~~~~~~~~~~~i~IG~~~~I~ 31 (145)
T cd03349 4 VGDYSYGSGPDCDVGGDKLSIGKFCSIA 31 (145)
T ss_pred EeCceeeCCCCceEeCCCeEECCCCEEC
Confidence 455555554 333332 45555555555
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=61.07 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=50.8
Q ss_pred cCCCceEec---ceEEcCCcEECCCcEECCC-----CCceEeCCEEcCCCEECCCcEEcc-----ceEECCCcEECcccE
Q 020113 242 LATGSNIIG---NVLVHEGAKIGDGCLIGPD-----KHACISSSIIGWHSTVGRWARVEN-----MTILGEDVHVADEVY 308 (331)
Q Consensus 242 i~~~~~i~~---~~~i~~~~~i~~~~~I~~~-----~~~~i~~s~i~~~~~ig~~~~i~~-----~~~i~~~~~i~~~~~ 308 (331)
+.+++.|.+ ++.+|.-|+++.+|+|.|+ .+-..=...||+++.|++.|.+.. .+.||.|+.||.+|+
T Consensus 42 v~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCV 121 (184)
T KOG3121|consen 42 VEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCV 121 (184)
T ss_pred EeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceE
Confidence 456666653 4555555666666666555 222223467899999999988766 244555555555555
Q ss_pred Ec-CcEEccCeEEccCccCC
Q 020113 309 SN-GAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 309 i~-~~~v~~~~~i~~~~~~~ 327 (331)
|+ .|.|-+++++.++.-.+
T Consensus 122 lkdCc~ild~tVlPpet~vp 141 (184)
T KOG3121|consen 122 LKDCCRILDDTVLPPETLVP 141 (184)
T ss_pred hhhheeccCCcccCcccccC
Confidence 54 35556666666554443
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.95 E-value=3e-05 Score=76.66 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=50.2
Q ss_pred cCCccCCCceEecceE-------EcCCcEECCCcEECCC---CCceEeC-CEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 238 SSSKLATGSNIIGNVL-------VHEGAKIGDGCLIGPD---KHACISS-SIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~-------i~~~~~i~~~~~I~~~---~~~~i~~-s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
..++|++++.|.+... ||+||.|+++|.|... .+....+ .+||++|.||.+|.|..++.||+++.|+++
T Consensus 111 lGa~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgag 190 (695)
T TIGR02353 111 LGAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHG 190 (695)
T ss_pred cCCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCC
Confidence 3567888888876433 5555555555555321 1122223 488999999999999877999999999999
Q ss_pred cEEcC
Q 020113 307 VYSNG 311 (331)
Q Consensus 307 ~~i~~ 311 (331)
+.+.+
T Consensus 191 S~V~~ 195 (695)
T TIGR02353 191 SALQG 195 (695)
T ss_pred CEecC
Confidence 88864
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=68.61 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=107.7
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHc--------------C--CCEEEEEeccChHHHHHH
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV--------------G--VTEVVLAINYQPEVMLNF 63 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~--------------g--i~~i~iv~~~~~~~i~~~ 63 (331)
+|+||||.|+||+- ..||.|++|+ ++++++...+++... + +.-+++.+....++++++
T Consensus 119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f 195 (493)
T PLN02435 119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195 (493)
T ss_pred EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence 57789999999987 7899999885 889999999876431 1 233444445666889999
Q ss_pred HHHhhhccCe---EEEEeeC---------------------CcccCChHHHHH-----HHhhccCCCCCcEEEEeCCeec
Q 020113 64 LKEFEKKLEI---KITCSQE---------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVIS 114 (331)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~---------------------~~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~ 114 (331)
+++. ..+|. .+.+..| ..|.|.++-... .++.+....-+++.+...|.+.
T Consensus 196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 9862 22221 2332222 135566553321 2333333323388899999954
Q ss_pred c-ccHHHHHHHHhhcCCceEEE-e--c-CCCCceEEEE-cCCcCc--eeEeeecCCC------C-----CCCeEEEEEEE
Q 020113 115 E-YPLKQMIEFHRGRGGEASIM-V--D-EPSKYGVVVM-EETTGK--VEKFVEKPKN------F-----VGNKINAGIYL 175 (331)
Q Consensus 115 ~-~~l~~~l~~~~~~~~~~~i~-~--~-~~~~~~~v~~-d~~~~~--v~~~~ek~~~------~-----~~~~~~~Giy~ 175 (331)
. .--..++-.+..++.++.+- + . ..+.-|.+.. +.+ ++ +.++.|-+.. + .-...+.+.++
T Consensus 275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~ 353 (493)
T PLN02435 275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHM 353 (493)
T ss_pred ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccccchhhHHHhh
Confidence 3 33456777778888887765 2 2 2345566654 232 44 5555553321 1 11355778888
Q ss_pred EChhhHhhc
Q 020113 176 LNPSVLDRI 184 (331)
Q Consensus 176 ~~~~~l~~l 184 (331)
|+-++++.+
T Consensus 354 fs~~fL~~~ 362 (493)
T PLN02435 354 FTLDFLNQV 362 (493)
T ss_pred ccHHHHHHH
Confidence 998888765
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.1e-05 Score=62.89 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=46.2
Q ss_pred cceEEcCCcEECCCcEECCC--------CCc--e--EeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 250 GNVLVHEGAKIGDGCLIGPD--------KHA--C--ISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 250 ~~~~i~~~~~i~~~~~I~~~--------~~~--~--i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
.++.|++++.++++|.|.++ .+. . ...++||++|+||.++.|..++.||+++.||+++++++
T Consensus 86 ~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 86 EGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 44556666666666666532 111 1 12599999999999999999999999999999999975
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.1e-05 Score=46.00 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=6.7
Q ss_pred CEEcCCCEECCCcEE
Q 020113 277 SIIGWHSTVGRWARV 291 (331)
Q Consensus 277 s~i~~~~~ig~~~~i 291 (331)
+.|+++|.|++++.|
T Consensus 20 ~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 20 VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEE-TTEEEETTEEE
T ss_pred CEECCCCEEcCCCEE
Confidence 444444444444444
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.7e-05 Score=44.16 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=11.9
Q ss_pred EcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 279 IGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 279 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
||++|.||.+|.+ + ..||++|+|++|+.|
T Consensus 4 IG~~~~ig~~~~i-g-i~igd~~~i~~g~~I 32 (34)
T PF14602_consen 4 IGDNCFIGANSTI-G-ITIGDGVIIGAGVVI 32 (34)
T ss_dssp E-TTEEE-TT-EE-T-SEE-TTEEE-TTEEE
T ss_pred ECCCEEECccccc-C-CEEcCCCEECCCCEE
Confidence 4444444444444 2 555555555555544
|
... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.7e-05 Score=42.64 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=13.1
Q ss_pred EECCCcEECCCCCceEeCCEEcCCCEECCCcEE
Q 020113 259 KIGDGCLIGPDKHACISSSIIGWHSTVGRWARV 291 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i 291 (331)
.||++|.|+ .+|.+ +..||++|.|++++.|
T Consensus 3 ~IG~~~~ig--~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIG--ANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE---TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEEC--ccccc-CCEEcCCCEECCCCEE
Confidence 445555555 33443 3556666666666554
|
... |
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.002 Score=59.32 Aligned_cols=175 Identities=23% Similarity=0.275 Sum_probs=102.0
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC-CcchHHHHHHHHHHc------CCCEEEEEeccChHHHHHHHHHhhhccC--
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEKKLE-- 72 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~------gi~~i~iv~~~~~~~i~~~~~~~~~~~~-- 72 (331)
.+++||||+|+||+- ..||.+++|. |+++++.+.++++.+ .+..+++.+ .+.++...++... ...+
T Consensus 107 Avl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS-~nt~~t~s~f~~~-~Y~~~~ 181 (472)
T COG4284 107 AVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTS-LNTEETDSYFKSN-DYFGLD 181 (472)
T ss_pred EEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEec-CCcHHHHHHHhhh-hhcCCC
Confidence 468899999999998 6899999998 889999999877753 355666655 5555555555431 1111
Q ss_pred -eEEEEeeC-----------------------CcccCChH---HHHH--HHhhccCCCCCcEEEEeCCeeccccH-HHHH
Q 020113 73 -IKITCSQE-----------------------TEPLGTAG---PLAL--ARDKLIDDSGEPFFVLNSDVISEYPL-KQMI 122 (331)
Q Consensus 73 -~~v~~~~~-----------------------~~~~G~~~---al~~--~~~~~~~~~~~~~lv~~~D~i~~~~l-~~~l 122 (331)
..+.+-.| .-|.|.++ ++.. ..+.+-...-+.+.|.+.|.+. ..+ -.++
T Consensus 182 k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~-~~vD~~~l 260 (472)
T COG4284 182 KEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLG-ATVDLKFL 260 (472)
T ss_pred HHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccc-cccCHHHH
Confidence 01111111 11334433 3332 2333322222388899999943 333 3466
Q ss_pred HHHhhcCCceEEE-e---cCCCCceEEE-EcCCcCceeEeeecCCCCC------C----CeEE-EEEEEEChhhHhh
Q 020113 123 EFHRGRGGEASIM-V---DEPSKYGVVV-MEETTGKVEKFVEKPKNFV------G----NKIN-AGIYLLNPSVLDR 183 (331)
Q Consensus 123 ~~~~~~~~~~~i~-~---~~~~~~~~v~-~d~~~~~v~~~~ek~~~~~------~----~~~~-~Giy~~~~~~l~~ 183 (331)
..+..++.+.++- + .....-|++. .++. -+++++.+-|.+.. + ...+ .++++++-+.+..
T Consensus 261 g~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~ 336 (472)
T COG4284 261 GFMAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKE 336 (472)
T ss_pred HHHHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHh
Confidence 6777777777766 2 2223445444 6765 67888877655311 1 1223 6677777766654
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00024 Score=58.66 Aligned_cols=75 Identities=16% Similarity=0.377 Sum_probs=56.8
Q ss_pred cceEEcCCc-----EECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 250 GNVLVHEGA-----KIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 250 ~~~~i~~~~-----~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
+.++||++| ++|+....| ++++|.+.+++.+|.|+++|.+.++++.+.+.+||.++.|+ +-++.+.-.|+++
T Consensus 21 gdViIG~nS~l~~~V~g~~iivg--e~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~d 98 (277)
T COG4801 21 GDVIIGKNSMLKYGVVGEEIIVG--ERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGAD 98 (277)
T ss_pred ccEEEcccceeeeeeeeeeEEec--cCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccc
Confidence 445555544 566777778 88999999999999999999999999999999999999886 4444455555555
Q ss_pred ccC
Q 020113 324 IVN 326 (331)
Q Consensus 324 ~~~ 326 (331)
+..
T Consensus 99 V~I 101 (277)
T COG4801 99 VII 101 (277)
T ss_pred eEE
Confidence 443
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00011 Score=56.16 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=13.9
Q ss_pred ccCCCceEecceEEcC---CcEECCCcEEC
Q 020113 241 KLATGSNIIGNVLVHE---GAKIGDGCLIG 267 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~---~~~i~~~~~I~ 267 (331)
.++++|+++|.+++-. --+||+||.|+
T Consensus 28 ti~~gcVvHP~a~~iA~aGPI~iGEnniiE 57 (190)
T KOG4042|consen 28 TIKEGCVVHPFAVFIATAGPIYIGENNIIE 57 (190)
T ss_pred EecCCcEecceEEEEcccCCEEEccCchhh
Confidence 3455666655544433 22555666555
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00028 Score=57.97 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=18.1
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
=.||+||.||.++.| .+..||.|++|+++
T Consensus 201 P~Igd~vliGaGvtILgnV~IGegavIaAG 230 (269)
T KOG4750|consen 201 PKIGDNVLIGAGVTILGNVTIGEGAVIAAG 230 (269)
T ss_pred CcccCCeEEccccEEeCCeeECCCcEEecc
Confidence 466777777777665 45666666666544
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00052 Score=60.80 Aligned_cols=177 Identities=13% Similarity=0.128 Sum_probs=99.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHHcC----------CCEEEEEeccChHHHHHHHHHhh
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAVG----------VTEVVLAINYQPEVMLNFLKEFE 68 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~g----------i~~i~iv~~~~~~~i~~~~~~~~ 68 (331)
-+|+||||.|+||+- ..||.++|+ .|+++++..++++.+.. +.-+++.+....+++++++++..
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~ 78 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN 78 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence 368899999999987 789999999 48899999998886532 33344444455688999998621
Q ss_pred hccC---eEEEEee------------------------CCcccCChHHHHHH-----HhhccCCCCCcEEEEeCCeecc-
Q 020113 69 KKLE---IKITCSQ------------------------ETEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISE- 115 (331)
Q Consensus 69 ~~~~---~~v~~~~------------------------~~~~~G~~~al~~~-----~~~~~~~~~~~~lv~~~D~i~~- 115 (331)
.+| ..+.+.. ...|.|.++-.... ++.+....-+++.+..-|....
T Consensus 79 -yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 79 -YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred -ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 111 1111111 11245555432211 2223222223777777777433
Q ss_pred ccHHHHHHHHhhcCCceEEE---ecCCCCceEEEE-c-CCcCc--e--eEeeecCC------------CCCC----CeEE
Q 020113 116 YPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVM-E-ETTGK--V--EKFVEKPK------------NFVG----NKIN 170 (331)
Q Consensus 116 ~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~-d-~~~~~--v--~~~~ek~~------------~~~~----~~~~ 170 (331)
.-...++-.+..++.++... ..+.+.-|++.. + .+ |+ + .++.|-+. .... ...+
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~-g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gN 236 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNN-GKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGN 236 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCC-CceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCe
Confidence 33445556666667766544 223345565553 1 22 22 3 44544221 0011 1567
Q ss_pred EEEEEEChhhHhh
Q 020113 171 AGIYLLNPSVLDR 183 (331)
Q Consensus 171 ~Giy~~~~~~l~~ 183 (331)
++.++|+-+.+..
T Consensus 237 i~~~~f~l~~~~~ 249 (315)
T cd06424 237 INQLVFSLGPYMD 249 (315)
T ss_pred eeeEEEeHHHHHH
Confidence 8888888776554
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0029 Score=52.31 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=16.1
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
++||++|.||.+++| .+..|+++++|+++
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigag 154 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAG 154 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeC
Confidence 566666666666655 24455555555543
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.03 Score=54.39 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=79.5
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHHc--------C-----CCEEEEEeccChHHHHHHHHH
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------G-----VTEVVLAINYQPEVMLNFLKE 66 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~--------g-----i~~i~iv~~~~~~~i~~~~~~ 66 (331)
+|+||||.|+||+- ..||.++|+ .|+++++..++++... + +--+++.+....+.+.+++++
T Consensus 131 vllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~ 207 (615)
T PLN02830 131 FVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLER 207 (615)
T ss_pred EEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHH
Confidence 57889999999987 679999997 4899999999987653 1 233444444556889999987
Q ss_pred hhhccC---eEEEEeeC------------------------CcccCChHHHHHH-----HhhccCCCCCcEEEEeCCeec
Q 020113 67 FEKKLE---IKITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVIS 114 (331)
Q Consensus 67 ~~~~~~---~~v~~~~~------------------------~~~~G~~~al~~~-----~~~~~~~~~~~~lv~~~D~i~ 114 (331)
. ..+| ..+.+..| ..|.|.++-.... ++.+....-+++.+...|...
T Consensus 208 n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L 286 (615)
T PLN02830 208 N-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL 286 (615)
T ss_pred C-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence 2 1111 11221111 1234444322111 222322222388899999832
Q ss_pred -cccHHHHHHHHhhcCCceEEE
Q 020113 115 -EYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 115 -~~~l~~~l~~~~~~~~~~~i~ 135 (331)
..-...++-.+..++.++.+.
T Consensus 287 ~~~Adp~flG~~~~~~~d~~~k 308 (615)
T PLN02830 287 VFKAIPAALGVSATKGFDMNSL 308 (615)
T ss_pred hhcccHHHhHHHHhcCCceEEE
Confidence 222377888888888887665
|
|
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.027 Score=43.53 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=68.0
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|..|+ +++.++++++.+.+ ..+++++.+...+...+.+.++... .............|.+.++..+++....+
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-- 79 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAARGE-- 79 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhcCC--
Confidence 444444 89999999999987 7788888877666677777664332 12233444556778899998888888543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHh
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
.++++.+|.+...+ +..++..+.
T Consensus 80 -~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 80 -YILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred -EEEEECCCCccCccHHHHHHHHHh
Confidence 89999999987665 555544443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.024 Score=44.81 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=74.0
Q ss_pred ceeCCc-chHHHHHHHHHHc--CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ ..|..+++.+.+. ...+++|+-+...+...+.+.++.+ ....+.++..+...|.+.+...+++....+
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~-- 80 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKGE-- 80 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--SS--
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccccee--
Confidence 566566 6899999988876 4567777665544566777776543 234566666666668899999999998775
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++..|.+...+ ++.+++.+.+.+.++.+.
T Consensus 81 -~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 113 (169)
T PF00535_consen 81 -YILFLDDDDIISPDWLEELVEALEKNPPDVVIG 113 (169)
T ss_dssp -EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEE
T ss_pred -EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEE
Confidence 89999999976665 889999988877765544
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0072 Score=50.15 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=28.7
Q ss_pred CCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccC
Q 020113 262 DGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPH 317 (331)
Q Consensus 262 ~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 317 (331)
.+|.|+ ..|.+. |.+.+.+++||.+++|.+.-+...+-.||+++.|+++.+..+
T Consensus 55 ~dirid--mw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggfva~g 109 (277)
T COG4801 55 KDIRID--MWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGFVAKG 109 (277)
T ss_pred cceeee--eeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCeeecc
Confidence 444444 445553 445555555555555555555555555555555555555544
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.85 Score=41.62 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=43.0
Q ss_pred EEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHHc----C--CCEEEEEeccChHHHHHHHHHhh
Q 020113 4 LILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G--VTEVVLAINYQPEVMLNFLKEFE 68 (331)
Q Consensus 4 vIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~~~ 68 (331)
+=|-||.|+-|+- ..||.++.+ .|.+.|+-++++.... + +--+.+-+-...++.+.+++++.
T Consensus 107 lKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 107 LKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred EEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 3467999999998 789999999 5678777666555432 2 33444444355678888888754
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0024 Score=49.12 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred EECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 259 KIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
.+|++.+|+ .+|.+. ++.+.++|.+|..|++-..-.|-+++.|..-..++
T Consensus 97 kvGd~NVie--skayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~ 147 (190)
T KOG4042|consen 97 KVGDRNVIE--SKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLS 147 (190)
T ss_pred hhcCcceEe--eeeEecCCcEEcCCceeccceEEecccccCCcceEEcccccc
Confidence 444444444 333332 23344444444444444433344444443333333
|
|
| >PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.023 Score=47.79 Aligned_cols=107 Identities=24% Similarity=0.352 Sum_probs=49.5
Q ss_pred CeEEEEeCCCC---cccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhh-ccCeEEE
Q 020113 1 MKALILVGGFG---TRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK-KLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g---~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~-~~~~~v~ 76 (331)
|++||+--..+ |||.+. ++-.--.=.-+.|+..++..+.. ++ +++++... . +. .... ..+.++.
T Consensus 1 m~~VIPvK~~~~aKSRLs~~---L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~-~-v~----~~a~~~~g~~vl 68 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV---LSPEEREALALAMLRDVLAALRA--VD-VVVVSRDP-E-VA----ALARARLGAEVL 68 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT---S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES---S--T----TTTT---SSEEE
T ss_pred CeEEEEcCCCCccccccCcc---CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch-h-hh----hhhhhccCCeEe
Confidence 88899865443 677552 11000000123588999999987 56 66666422 1 11 1111 3455542
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHH
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFH 125 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~ 125 (331)
.++ ..|.-.++..+....... +++++++|+ +...++..+++..
T Consensus 69 --~d~-~~gLN~Al~~a~~~~~~~---~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 69 --PDP-GRGLNAALNAALAAAGDD---PVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp --E----S-HHHHHHHHHH-H--S----EEEE-S--TT--HHHHHHHCT-S
T ss_pred --cCC-CCCHHHHHHHHHhccCCC---ceEEeecCCccCCHHHHHHHHhcc
Confidence 333 457777777773333322 899999999 6677899988864
|
One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B. |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.34 Score=38.20 Aligned_cols=101 Identities=25% Similarity=0.257 Sum_probs=66.5
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ ..|..+|+.+.+.. ..+++|+-+...+...+.+.++.......+.+.......|.+.+...+++....+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~-- 80 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGD-- 80 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCC--
Confidence 455555 68888999888764 4566666555445555566654332223344555566778889998888887543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++.+|.....+ +..++..+.+..
T Consensus 81 -~i~~~D~D~~~~~~~l~~~~~~~~~~~ 107 (180)
T cd06423 81 -IVVVLDADTILEPDALKRLVVPFFADP 107 (180)
T ss_pred -EEEEECCCCCcChHHHHHHHHHhccCC
Confidence 88999999966555 777756555443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.54 Score=38.66 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=65.7
Q ss_pred CceeCCcc---hHHHHHHHHHHcC--CCEEEEEeccC-hHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 25 LVDFANKP---MILHQIEALKAVG--VTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 25 llpi~g~p---li~~~l~~l~~~g--i~~i~iv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
++|..|+. .|..+|+.+.... ..+++|+-+.. .+...+.+..+..+.+ +.++......|.+.+...+....+
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35665552 8999999988753 24666554433 3556666666544444 444444555788888888888765
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.+ .++++.+|.+...+ ++.+++.+.+..
T Consensus 81 gd---~i~~lD~Dd~~~~~~l~~~~~~~~~~~ 109 (201)
T cd04195 81 YD---WVARMDTDDISLPDRFEKQLDFIEKNP 109 (201)
T ss_pred CC---EEEEeCCccccCcHHHHHHHHHHHhCC
Confidence 43 88889999966554 788888775543
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.2 Score=36.27 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=67.6
Q ss_pred CeEEEEe---CCCCcccCCCCC-CCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILV---GGFGTRLRPLTL-SVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA---~G~g~rl~plt~-~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~ 76 (331)
|.+||+- ++.-+||.|.=. +.-+.++ .-||..++..+... +.+|.|++... + +..+-.+ .++
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde-~-~~~~a~~------~~v- 66 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDE-E-VLVPATK------LEV- 66 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCCh-H-hhhhccc------cee-
Confidence 6778874 355677776411 1111111 24888888888886 67888887532 2 1111111 122
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
... .+.-.++.++++.+... + .++|+.+|+ +...+++++++...+ ++..+.
T Consensus 67 -l~d---~dLN~Ai~aa~~~~~~p-~-~v~vvmaDLPLl~~~~i~~~~~~~~d--~dvvia 119 (210)
T COG1920 67 -LAD---PDLNTAINAALDEIPLP-S-EVIVVMADLPLLSPEHIERALSAAKD--ADVVIA 119 (210)
T ss_pred -eec---cchHHHHHHHHhhCCCC-c-ceEEEecccccCCHHHHHHHHHhcCC--CcEEEe
Confidence 222 23567888888888764 2 799999999 566779998886543 444443
|
|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.36 Score=40.27 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=67.6
Q ss_pred ceeCCc-chHHHHHHHHHHc------CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 26 VDFANK-PMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~------gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
+|..|. ..|..+++.+.+. ..-+++++-+...+...+.++++..+.+..+.++......|.+.++..+++...
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~ 82 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR 82 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc
Confidence 454444 5667777766653 234666665444445555666554433333455555566789999999988886
Q ss_pred CCCCCcEEEEeCCeeccc-cHHHHHHHHhhcCCceEEE
Q 020113 99 DDSGEPFFVLNSDVISEY-PLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~~~~~i~ 135 (331)
.+ .++++.+|..... .+..+++...+.+.++.+.
T Consensus 83 gd---~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 83 GD---YILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CC---EEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 64 8889999996654 4888888755555554443
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.68 Score=36.40 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=65.6
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ .++..+++.+.+.. ..+++|+.+...+...+.+.+... .+.+...+...|.+.++..+++....+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~~~~-- 76 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREAKGD-- 76 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhCCCC--
Confidence 455555 68999999998763 456777666555555656655321 355555566778899999888888543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++..|.....+ +..+++.+.+..
T Consensus 77 -~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 77 -YVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred -EEEEECCCcEECccHHHHHHHHHHhCC
Confidence 78888888866554 777777655443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.65 Score=39.69 Aligned_cols=107 Identities=10% Similarity=0.119 Sum_probs=68.2
Q ss_pred ceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|.-|. -.|..+++.+.+... -+++++.+...+...+.++++......++.........|.+.++..+++....+
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd 86 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFARGE 86 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcCCC
Confidence 444444 578888888877532 246665554445566666664322224455444445567888999888876553
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|.....+ +.++++.+.+...+..++
T Consensus 87 ---~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 87 ---YVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred ---EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 88899999976655 788888887544444433
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.76 Score=37.10 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=69.6
Q ss_pred ceeCCc-chHHHHHHHHHHc----CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|..+. ..|..+++.+.+. ...+++|+-+...+...+.+..+..+.. .+.++..+...|-+.+...+.+....+
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~gd 81 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARGD 81 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcCC
Confidence 344444 4677888888776 2566666665544555666665443332 334555566778899999888888763
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|.....+ +..+++...+.+.++.+.
T Consensus 82 ---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 82 ---IVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ---EEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 88999999865544 888888766655555444
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.97 Score=38.68 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=69.7
Q ss_pred CCCCC--CCceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHH
Q 020113 19 LSVPK--PLVDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLA 91 (331)
Q Consensus 19 ~~~pK--~llpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~ 91 (331)
...|+ -++|..|. ..|..+|+.+.+... -+++|+.+...+...+.++++... .+.++......|-+.++.
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~n 102 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAALN 102 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHHH
Confidence 34444 45555566 688888888876432 257776655555666666665432 344455556678888888
Q ss_pred HHHhhccCCCCCcEEEEeCCeecccc-HHHHHHHHhhc
Q 020113 92 LARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGR 128 (331)
Q Consensus 92 ~~~~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 128 (331)
.+.+....+ .++++.+|.+...+ ++++++.+.+.
T Consensus 103 ~gi~~a~~d---~i~~lD~D~~~~~~~l~~l~~~~~~~ 137 (251)
T cd06439 103 RALALATGE---IVVFTDANALLDPDALRLLVRHFADP 137 (251)
T ss_pred HHHHHcCCC---EEEEEccccCcCHHHHHHHHHHhcCC
Confidence 888887653 89999999976655 78888887543
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.12 Score=48.21 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=43.8
Q ss_pred cEEEEEe-CceEEecCCHHHHHHHHHHHHhhh--cc-c-cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCE
Q 020113 204 KLFAMVL-PGFWMDIGQPKDYITGLRLYLDFL--QK-N-SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSI 278 (331)
Q Consensus 204 ~i~~~~~-~~~~~~i~t~~d~~~a~~~~l~~~--~~-~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~ 278 (331)
++.+... ++.|+.++|..+|++-...- ..+ .. . ........+.+.+.+.|- +|++..++.++ ++++|++|.
T Consensus 228 ~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~l~~~~~~~~~~~~~~~~~~~~~~~Vi-nSil~~~~~vg--~~svIe~s~ 303 (414)
T PF07959_consen 228 PLNVVPLPNGKFYHFGTSREYLEHLTSD-SELGIMRRKFSHSPATTPSDSEASSCVI-NSILEGGVSVG--PGSVIEHSH 303 (414)
T ss_pred cccccccCCceEEEecCCHHHHHhhccC-cccccceeeeeccccccccccCCCeeEE-EeEecCCceEC--CCCEEEeee
Confidence 4555544 47799999988877664332 111 00 0 000001122233333332 55566666666 556666666
Q ss_pred EcCCCEECCCcEEcc
Q 020113 279 IGWHSTVGRWARVEN 293 (331)
Q Consensus 279 i~~~~~ig~~~~i~~ 293 (331)
++.++.||.+|.|.+
T Consensus 304 l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 304 LGGPWSIGSNCIISG 318 (414)
T ss_pred cCCCCEECCCCEEEC
Confidence 666666666666655
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.1 Score=36.94 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=64.3
Q ss_pred ceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ ..|..+|+.+.+... -+++|+-+...+...+.++++..+.+..+.+.......|.+.++..++...+.+
T Consensus 4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g~-- 81 (214)
T cd04196 4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGD-- 81 (214)
T ss_pred EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCCC--
Confidence 455555 578899998887532 356665543334455556665544444455555566678888888876665543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++..|.....+ +..+++...+..
T Consensus 82 -~v~~ld~Dd~~~~~~l~~~~~~~~~~~ 108 (214)
T cd04196 82 -YVFFCDQDDIWLPDKLERLLKAFLKDD 108 (214)
T ss_pred -EEEEECCCcccChhHHHHHHHHHhcCC
Confidence 78888888865544 888888744433
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.1 Score=37.59 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=67.8
Q ss_pred ceeCCc-chHHHHHHHHHHcC---CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDS 101 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g---i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~ 101 (331)
+|.-|. ..|..+++.+.+.- .-+++||-+...+...+.++++....+ .+.+.......|.+.++..++.....+
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~gd- 80 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAARGD- 80 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcCCC-
Confidence 455555 56888888887642 346666654433445555555433222 344455566778889999888887664
Q ss_pred CCcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 102 GEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 102 ~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|.....+ +..+++.+.+.+.++...
T Consensus 81 --~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 81 --VIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred --EEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 78899999866544 788888766555554333
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.8 Score=36.64 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=61.1
Q ss_pred CceeCCc-c-hHHHHHHHHHHcCC--CEEEEEeccCh-HHHHHHHHHhhhccCeEEEEeeCCcccC-ChHHHHHHHhhcc
Q 020113 25 LVDFANK-P-MILHQIEALKAVGV--TEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLG-TAGPLALARDKLI 98 (331)
Q Consensus 25 llpi~g~-p-li~~~l~~l~~~gi--~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~G-~~~al~~~~~~~~ 98 (331)
++|.-|. | +|..+++.+.+... -+++|+-+... ....+.++++.++.+.++.++......| .++++..+++...
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~ 82 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA 82 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcC
Confidence 3566565 3 79999999988643 35666554332 2232333333222333455554444446 3778888888765
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHh
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
... |.++++..|.....+ +..++..+.
T Consensus 83 ~~~-d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 83 PDA-EIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CCC-CEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 322 389999999966555 788888765
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.9 Score=38.17 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=64.7
Q ss_pred ceeCCc--chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHH-hhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 26 VDFANK--PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKE-FEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~-~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
+|.-|. ..|..+|+.+...-. .+|+||=+...+.....+.+ ........+.++..+...|-+.+...++....
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~ 83 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT 83 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc
Confidence 344444 488899998876421 26777665444333333322 11122234555655666788888888888775
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcCC
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~ 130 (331)
.+ .++++.+|.....+ +..+++.+.+...
T Consensus 84 gd---~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 84 GD---VLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CC---EEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 54 89999999976554 8888888766544
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.5 Score=37.45 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred ceeCCc-chHHHHHHHHHHc----CCCEEEEEeccChHHHHHHHHHhhhccC-eEEEEeeCCcccCChHHHHHHHhhccC
Q 020113 26 VDFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~G~~~al~~~~~~~~~ 99 (331)
+|..|. .-|..+++.+.+. .--+|+|+-+...+...+.++++...++ ..+.+.......|.+.++..++.....
T Consensus 15 Ip~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g 94 (243)
T PLN02726 15 VPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASG 94 (243)
T ss_pred EccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCC
Confidence 344444 5677777766542 1236666654444555666665543332 345445445566888888888877654
Q ss_pred CCCCcEEEEeCCeeccc-cHHHHHHHHhhcCCceEEE
Q 020113 100 DSGEPFFVLNSDVISEY-PLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~~~~~i~ 135 (331)
+ .++++.+|...+. .+..+++...+.+.+++..
T Consensus 95 ~---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 95 D---FVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred C---EEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 3 8889999996654 4788888776666655444
|
|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=92.69 E-value=2 Score=36.37 Aligned_cols=102 Identities=12% Similarity=0.174 Sum_probs=65.1
Q ss_pred ceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|..|. +.|..+++.+.+... -+++|+-+...+...+.++.+... ...+.++.. ...|.+.++..+++..+.+
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~-~~~~~~~a~N~g~~~a~~d 83 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDN-PKRIQSAGLNIGIRNSRGD 83 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeC-CCCCchHHHHHHHHHhCCC
Confidence 344444 578888998887543 367776655555666666665433 223444443 3446777888888777543
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcCCce
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEA 132 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~ 132 (331)
.++++.+|.....+ ++.+++.+.+.+..+
T Consensus 84 ---~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 84 ---IIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred ---EEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 88899999966554 788888766555443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.33 Score=45.05 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=46.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHc------------CCCEEEEEeccChHHHHHHHHH
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV------------GVTEVVLAINYQPEVMLNFLKE 66 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~------------gi~~i~iv~~~~~~~i~~~~~~ 66 (331)
.++++|+|.|+|++. ..||.+.+++ |+.++++..+.+... .+..++.+.....+...+++..
T Consensus 99 a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~ 175 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES 175 (477)
T ss_pred eEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence 368899999999988 7899999997 556888887755432 2445555555666778888774
|
|
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.8 Score=35.53 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=61.8
Q ss_pred eeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCC
Q 020113 27 DFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (331)
Q Consensus 27 pi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~ 103 (331)
|--|+ ..|..+|+.+.+.. ..+++|+-+...+...+.++++....+ +.+....+..|.+.++..+.+.......+
T Consensus 4 ~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d 81 (202)
T cd04185 4 VTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYD 81 (202)
T ss_pred EeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCC
Confidence 43343 57899999988753 236666655444567777776544333 44555555667777776666654322233
Q ss_pred cEEEEeCCeecccc-HHHHHHHHh
Q 020113 104 PFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 104 ~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
.++++..|.....+ +..+++.+.
T Consensus 82 ~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 82 WIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred EEEEeCCCCCcChHHHHHHHHHHh
Confidence 78899999977655 677777665
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.9 Score=40.33 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=66.8
Q ss_pred CceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCC
Q 020113 25 LVDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDS 101 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~ 101 (331)
++|..|. ..+..+++.+.+... -+++|+-+...+...+.++++..+. .++.++...+..|-+.++..+.+..+.+
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~~d- 136 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAARSE- 136 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcCCC-
Confidence 4454565 688999998887542 3666665544455555555544332 2355555455668888888888876543
Q ss_pred CCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 102 GEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 102 ~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++.+|.+...+ +.++++.+++..
T Consensus 137 --~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 137 --YLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred --EEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 89999999976655 788888775443
|
|
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
Probab=92.23 E-value=3.7 Score=34.47 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceeCCc--chHHHHHHHHHHcCCC----EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCccc-CChHHHHHHHhhcc
Q 020113 26 VDFANK--PMILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPL-GTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi~----~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~-G~~~al~~~~~~~~ 98 (331)
+|..|. .++..+++.+...... +++|+-+...+...+.+..+.......+ ....... +.+.++..+++...
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n~~~~~a~ 84 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRY--LTRPDNRHAKAGNLNNALAHTT 84 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceE--EEeCCCCCCcHHHHHHHHHhCC
Confidence 455564 3788999998875432 6777666555677777777654332233 3323333 34566777777664
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
.+ .++++..|.+.+.+ +..+++.+.+
T Consensus 85 ~d---~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 GD---FVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CC---EEEEEccccCcCccHHHHHHHHHhc
Confidence 33 88899999976655 7888887765
|
Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=91.93 E-value=2.3 Score=34.28 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=61.2
Q ss_pred ceeCCc-chHHHHHHHHHHc-----CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccC
Q 020113 26 VDFANK-PMILHQIEALKAV-----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~-----gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~ 99 (331)
+|..|. ..|..+++.+.+. ..-+++++-+...+...+.++.+..+.. .+.++......|.+.++..++.....
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a~~ 81 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHARG 81 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhcCC
Confidence 344333 2455555554432 2346777665444555555665443322 34455545567888999888887765
Q ss_pred CCCCcEEEEeCCeecccc-HHHHHHHHhhcCCceE
Q 020113 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEAS 133 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~ 133 (331)
+ .++++.+|.....+ ++.+++. .+.+.++.
T Consensus 82 d---~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v 112 (181)
T cd04187 82 D---AVITMDADLQDPPELIPEMLAK-WEEGYDVV 112 (181)
T ss_pred C---EEEEEeCCCCCCHHHHHHHHHH-HhCCCcEE
Confidence 3 88899999976554 7888887 34444443
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
Probab=91.60 E-value=3.5 Score=33.80 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=55.4
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccC-eEEEEeeCCcccCC---hHHHHHHHhhcc
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPLGT---AGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~G~---~~al~~~~~~~~ 98 (331)
+|..|. +-|..+|+.+.+.. --+++||.+...+...+.+.++...+. ..+.++......|. +.++..+.+...
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~ 86 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR 86 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC
Confidence 455444 57888888887642 246666665444444555555433322 33444443333343 334545555554
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHh
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
.+ .++++.+|.....+ +..+++...
T Consensus 87 ~d---~i~~~D~D~~~~~~~l~~l~~~~~ 112 (196)
T cd02520 87 YD---ILVISDSDISVPPDYLRRMVAPLM 112 (196)
T ss_pred CC---EEEEECCCceEChhHHHHHHHHhh
Confidence 33 88889999966554 777777653
|
UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. |
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=91.24 E-value=3 Score=33.78 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=59.7
Q ss_pred eeCCc-chHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCC
Q 020113 27 DFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (331)
Q Consensus 27 pi~g~-pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~ 103 (331)
|.-|. ..|..+++.+.+.... +|+|+-+...+...+.+.++... +.+....+..|.+.++..+++....+
T Consensus 5 ~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a~~~--- 77 (202)
T cd06433 5 PTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALATGD--- 77 (202)
T ss_pred eccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHcCCC---
Confidence 44344 5888999988875443 56555443344556666654332 22233345568888888888877653
Q ss_pred cEEEEeCCeecc-ccHHHHHHHHhhc
Q 020113 104 PFFVLNSDVISE-YPLKQMIEFHRGR 128 (331)
Q Consensus 104 ~~lv~~~D~i~~-~~l~~~l~~~~~~ 128 (331)
.++++.+|.... ..+..++..+.+.
T Consensus 78 ~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 78 IIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred EEEEeCCCcccCchHHHHHHHHHHhC
Confidence 888899998654 4477877555444
|
Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
Probab=91.01 E-value=5.1 Score=32.38 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=61.9
Q ss_pred CceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc-
Q 020113 25 LVDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI- 98 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~- 98 (331)
++|..|. ..|..+++.+.+... -+|+|+.+...+...+.+..+ +..+.........|.+.++..+.....
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~ 77 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLN 77 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 3565554 688888998877543 356666655545555555543 233433333445577888887777663
Q ss_pred -CCCCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 99 -DDSGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 99 -~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
....|.++++.+|.....+ +..+++.+.+
T Consensus 78 ~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 78 LADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred cCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 1222378899999977655 7788777654
|
The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier. |
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.9 Score=38.52 Aligned_cols=100 Identities=10% Similarity=0.174 Sum_probs=58.6
Q ss_pred CceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhcc-CeEEEEeeCCcccCCh---HHHHHHHhhc
Q 020113 25 LVDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTA---GPLALARDKL 97 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~G~~---~al~~~~~~~ 97 (331)
++|..|. +.|..+++.+.+... -+|+++.+...+...+.++++..++ ..++.++..+.+.|.. .++.++.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 5566555 889999999987643 3666655433333344444443322 2345555444444532 3444444444
Q ss_pred cCCCCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
+. |.++++.+|.....+ ++.+++.+.+
T Consensus 126 ~g---e~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 126 RH---DILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred cC---CEEEEECCCCCcChhHHHHHHHHhcC
Confidence 33 389999999976665 7888877653
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano |
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=3.2 Score=39.24 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=65.0
Q ss_pred CCceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 24 PLVDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 24 ~llpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
-++|..|. .-+..+++.+.+... -+++++.+...+...+.+.++..+.+ ++.++......|-+.++..+......+
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~~d 157 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAARSE 157 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCCCC
Confidence 45666666 678899998877532 36777665444445555555433322 233444344567788888887765443
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++.+|.+.+.+ +..+++.+.+..
T Consensus 158 ---~iv~lDAD~~~~~d~L~~lv~~~~~~~ 184 (444)
T PRK14583 158 ---YLVCIDGDALLDKNAVPYLVAPLIANP 184 (444)
T ss_pred ---EEEEECCCCCcCHHHHHHHHHHHHhCC
Confidence 89999999977665 777887765443
|
|
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=90.28 E-value=4.5 Score=34.01 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCC
Q 020113 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD 111 (331)
Q Consensus 32 pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D 111 (331)
+.|..+|+.+.+....+++|+.+...+...+.+...... ..+.+.. ....|-..++..++.....+ .++++.+|
T Consensus 14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--~~~~v~~-~~~~g~~~a~n~g~~~a~~d---~v~~lD~D 87 (235)
T cd06434 14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--GGIFVIT-VPHPGKRRALAEGIRHVTTD---IVVLLDSD 87 (235)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--CcEEEEe-cCCCChHHHHHHHHHHhCCC---EEEEECCC
Confidence 689999999887655677777765555555555332222 2232332 33457778887777776443 89999999
Q ss_pred eecccc-HHHHHHHHh
Q 020113 112 VISEYP-LKQMIEFHR 126 (331)
Q Consensus 112 ~i~~~~-l~~~l~~~~ 126 (331)
.....+ ++.+++.+.
T Consensus 88 ~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 88 TVWPPNALPEMLKPFE 103 (235)
T ss_pred ceeChhHHHHHHHhcc
Confidence 977665 788888776
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=89.48 E-value=4.7 Score=33.61 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred ceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC--cccCChHHHHHHHhhcc
Q 020113 26 VDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET--EPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~G~~~al~~~~~~~~ 98 (331)
+|..|. ..|..+|+.+..... -+|+|+-+...+...+.+..........+.++... ...|...++..++....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~ 82 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK 82 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc
Confidence 555555 578899998876532 35666655433444444440011122344444433 24566667777777654
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcCCc
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGE 131 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 131 (331)
.+ .++++.+|.+...+ ++.+++.+.+.+..
T Consensus 83 ~d---~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 83 GD---WIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred CC---EEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 43 88899999976655 78888876655443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
Probab=89.34 E-value=5 Score=37.89 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=64.7
Q ss_pred CceeCCc-chHHHHHHHHHHcCC--C--EEEEEeccChHHHHHHHHHhhhcc-CeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 25 LVDFANK-PMILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~--~i~iv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
++|.-|. ..|..+++.+.+... + +|+|+-+...+...+.++++.+.. .+.+... +...|-+.++..+++...
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka~AlN~gl~~s~ 131 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKAKALNAAIYNSI 131 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHHHHHHHHHHHcc
Confidence 4455455 789999999887543 2 466655544455666655543322 2333333 344688889998888765
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.+ .++++.+|.+...+ ++.+++.+.+.+
T Consensus 132 g~---~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 132 GK---YIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred CC---EEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 43 88889999977655 788888876443
|
Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). |
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
Probab=89.33 E-value=5.3 Score=31.97 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=59.1
Q ss_pred ceeCCc-chHHHHHHHHHHc--CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC-CcccCChHHHHHHHhhccCCC
Q 020113 26 VDFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE-TEPLGTAGPLALARDKLIDDS 101 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~-~~~~G~~~al~~~~~~~~~~~ 101 (331)
+|.-|+ ..|..+|+.+.+. ...+++|+-+...+...+.+.++....+.++..... ....|.+.+...+.+....+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~- 81 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGD- 81 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCC-
Confidence 455555 5788999998874 234666665555556666776654332333333322 22334556666666666543
Q ss_pred CCcEEEEeCCeecccc-HHHHHHHH
Q 020113 102 GEPFFVLNSDVISEYP-LKQMIEFH 125 (331)
Q Consensus 102 ~~~~lv~~~D~i~~~~-l~~~l~~~ 125 (331)
.++++.+|.+...+ +..+++.+
T Consensus 82 --~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 82 --YLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred --EEEEEcCCcccCHHHHHHHHHHh
Confidence 88899999976655 67777665
|
Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm |
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=89.14 E-value=7.5 Score=31.70 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHcCC--CEEEEEeccCh-HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEE
Q 020113 32 PMILHQIEALKAVGV--TEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (331)
Q Consensus 32 pli~~~l~~l~~~gi--~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~ 108 (331)
..+..+++.+.+.-. -+++|+-+... ..+...+..+... ...+.+.......|.+.++..++.....+ .++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~~d---~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELATGE---FVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhcCC---EEEEE
Confidence 678888888876532 25666544332 2344444433221 12344444555668888888888876553 78888
Q ss_pred eCCeecccc-HHHHHHHHhh
Q 020113 109 NSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 109 ~~D~i~~~~-l~~~l~~~~~ 127 (331)
..|.....+ ++.+++.+.+
T Consensus 91 d~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 91 DHDDELAPHALYEVVKALNE 110 (202)
T ss_pred CCCCcCChHHHHHHHHHHHh
Confidence 889866655 7888887733
|
The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=6.6 Score=35.45 Aligned_cols=105 Identities=8% Similarity=0.040 Sum_probs=66.5
Q ss_pred ceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|. ..|..+++.+..... -+++|+-+...+...+.+.++..+. ..+.+..+ +..|.+.+...+++....+
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~-~~i~vi~~-~n~G~~~arN~gl~~a~g~-- 87 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENY-PHVRLLHQ-ANAGVSVARNTGLAVATGK-- 87 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhC-CCEEEEEC-CCCChHHHHHHHHHhCCCC--
Confidence 455454 689999999987533 2555554433344444555443322 23444443 3568888888888887664
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|-....+ ++.+++...+.+.++.+.
T Consensus 88 -yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 88 -YVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred -EEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 88899999865444 788888776666665544
|
|
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.7 Score=36.34 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=61.6
Q ss_pred ceeCCc-chHHHHHHHH----HHcCCC-EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccC
Q 020113 26 VDFANK-PMILHQIEAL----KAVGVT-EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l----~~~gi~-~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~ 99 (331)
+|..|. .-|..+++.+ .+...+ +++++-+...+...+.+.++.++.+.++..+......|.+.++..+.+....
T Consensus 12 IP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~g 91 (325)
T PRK10714 12 IPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTG 91 (325)
T ss_pred EcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence 344343 3455555544 333332 5655554334455555555433334445444445566888999988887755
Q ss_pred CCCCcEEEEeCCeecc-ccHHHHHHHHhhcCCceE
Q 020113 100 DSGEPFFVLNSDVISE-YPLKQMIEFHRGRGGEAS 133 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~ 133 (331)
+ .++++.+|.-.+ ..+.++++.+.+ +.+++
T Consensus 92 d---~vv~~DaD~q~~p~~i~~l~~~~~~-~~DvV 122 (325)
T PRK10714 92 D---LIITLDADLQNPPEEIPRLVAKADE-GYDVV 122 (325)
T ss_pred C---EEEEECCCCCCCHHHHHHHHHHHHh-hCCEE
Confidence 3 888999999655 458888888753 45543
|
|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=88.66 E-value=5.5 Score=34.82 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHcCCCEEEEEeccC--hHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEe
Q 020113 32 PMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (331)
Q Consensus 32 pli~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~ 109 (331)
..|..+++.+.+. ..+|+||=+.. .+.+.+.+.+ ...+.++..++..|-+.+...+++.......|.++++.
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD 81 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLD 81 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence 4777888888875 45666654432 2234443332 12466666667779999998888876433334899999
Q ss_pred CCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 110 SDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 110 ~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.|.....+ +..+++.+.+.+..+.++
T Consensus 82 ~D~~~~~~~l~~l~~~~~~~~~~~~~~ 108 (281)
T TIGR01556 82 QDSRPGNAFLAAQWKLLSAENGQACAL 108 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 99976554 788888776544244443
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
Probab=87.73 E-value=7.2 Score=36.05 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred CceeCCc-chHHHHHHHHHHcCC---CEEEEEeccChHHHHHHHHHhhhccC--eEEEEeeCC-cc---cCChHHHHHHH
Q 020113 25 LVDFANK-PMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKKLE--IKITCSQET-EP---LGTAGPLALAR 94 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi---~~i~iv~~~~~~~i~~~~~~~~~~~~--~~v~~~~~~-~~---~G~~~al~~~~ 94 (331)
.+|..|. +.|..+++.+.+... -+|+|+-+...+...+.++++..+.+ ..+.++... .+ .|-..++..+.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 3444454 799999999987533 36776665444555555555433221 134444321 12 35556777777
Q ss_pred hhccCCC--CCcEEEEeCCeecccc-HHHHHHHHhhcCCce
Q 020113 95 DKLIDDS--GEPFFVLNSDVISEYP-LKQMIEFHRGRGGEA 132 (331)
Q Consensus 95 ~~~~~~~--~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~ 132 (331)
+...... .|.++++.+|...+.+ +.++++..++.+.+.
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 7665211 2388999999976555 789998887665543
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. |
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.54 E-value=9.9 Score=31.10 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=63.7
Q ss_pred CcchHHHHHHHHH-HcCCCEEEEEecc---Ch-HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCc
Q 020113 30 NKPMILHQIEALK-AVGVTEVVLAINY---QP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (331)
Q Consensus 30 g~pli~~~l~~l~-~~gi~~i~iv~~~---~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~ 104 (331)
|-|++-|.+.... +.+.+.=+|++.. +. .++.+.+++.... -++.........|.+.|..+++...+.+ .
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~--d~i~l~pR~~klGLgtAy~hgl~~a~g~---f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE--DNILLKPRTKKLGLGTAYIHGLKHATGD---F 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC--CcEEEEeccCcccchHHHHhhhhhccCC---e
Confidence 4567778777554 4566554444532 22 3444454442222 3455556677889999999999988764 5
Q ss_pred EEEEeCCeec-cccHHHHHHHHhhcCCceEEE
Q 020113 105 FFVLNSDVIS-EYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 105 ~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~i~ 135 (331)
+++..+|.-. +.-+.++++...+.+.+.+..
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~G 123 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLG 123 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeee
Confidence 6677788743 344788888777766665555
|
|
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.48 E-value=8.3 Score=36.04 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=72.7
Q ss_pred CceeCCc-c-hHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeC-CcccCChHHHHHHHhhccC
Q 020113 25 LVDFANK-P-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE-TEPLGTAGPLALARDKLID 99 (331)
Q Consensus 25 llpi~g~-p-li~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~-~~~~G~~~al~~~~~~~~~ 99 (331)
++|.-|. + .++.+++.+.+.... +++++.+...++..+.+.+...+.+..+..... ....|-+.++..++.....
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~~ 138 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKG 138 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcCC
Confidence 4455565 6 899999999998644 777777655677777777765554222222222 4556778899998888864
Q ss_pred CCCCcEEEEeCCeecccc-HHHHHHHHhhcCCc
Q 020113 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGE 131 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 131 (331)
+ -++++.+|.+...+ +.+++..+.+....
T Consensus 139 d---~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 139 D---VVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred C---EEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 3 78899999977666 78888888765544
|
|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
Probab=85.88 E-value=9.5 Score=32.08 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=55.0
Q ss_pred ceeCCc-chHHHHHHHHHHcCCC----EEEEEeccChHHHHHHHHHhhh---ccCeEEEEeeCCcccC-ChHHHHHHHhh
Q 020113 26 VDFANK-PMILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEK---KLEIKITCSQETEPLG-TAGPLALARDK 96 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi~----~i~iv~~~~~~~i~~~~~~~~~---~~~~~v~~~~~~~~~G-~~~al~~~~~~ 96 (331)
+|.-|. ..|..+|+.+.+.... +|+| +....+...+.+.++.. ..+.++..+......| .+.++..+.+.
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiV-vD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~ 85 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQV-LDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKV 85 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEE-EECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHh
Confidence 344444 6889999998874322 3444 33233333333333211 1234555555444455 46777777777
Q ss_pred ccCCCCCcEEEEeCCeecccc-HHHHHHHH
Q 020113 97 LIDDSGEPFFVLNSDVISEYP-LKQMIEFH 125 (331)
Q Consensus 97 ~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~ 125 (331)
.+.+ .++++.+|.+...+ +..+...+
T Consensus 86 a~~~---~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 86 AKGE---YVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred CCCC---EEEEEcCCCCCChHHHHHhhhhh
Confidence 6554 89999999977655 66655443
|
Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we |
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.61 E-value=12 Score=33.92 Aligned_cols=95 Identities=9% Similarity=0.109 Sum_probs=58.4
Q ss_pred CcchHHHHHHHHHHc----------CCCEEEEEeccChHHHHHHHHHhhhcc---CeEEEEeeCCcccCChHHHHHHHhh
Q 020113 30 NKPMILHQIEALKAV----------GVTEVVLAINYQPEVMLNFLKEFEKKL---EIKITCSQETEPLGTAGPLALARDK 96 (331)
Q Consensus 30 g~pli~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~~~~~~---~~~v~~~~~~~~~G~~~al~~~~~~ 96 (331)
..+-|..+++.+.+. +.-++++|-+...+...+.+.++.... +..+.++......|.+.++..++..
T Consensus 81 e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~ 160 (333)
T PTZ00260 81 EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLA 160 (333)
T ss_pred CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 336777777766541 134666665443444555555543321 2345555556667889999888887
Q ss_pred ccCCCCCcEEEEeCCeecc-ccHHHHHHHHhh
Q 020113 97 LIDDSGEPFFVLNSDVISE-YPLKQMIEFHRG 127 (331)
Q Consensus 97 ~~~~~~~~~lv~~~D~i~~-~~l~~~l~~~~~ 127 (331)
...+ .++++.+|.-.+ .++..+++...+
T Consensus 161 a~gd---~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 161 SRGK---YILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred ccCC---EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6543 888999998554 457777776654
|
|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.7 Score=36.55 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=54.2
Q ss_pred CceeCCc-chHHHHHHHHHHc--CCCEEEEEeccChHHHHHHHHHhhhccC-eEEEEeeCCccc---CChHHHHHHHhhc
Q 020113 25 LVDFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPL---GTAGPLALARDKL 97 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~---G~~~al~~~~~~~ 97 (331)
++|..|+ +.|..+|+.+.+. .--+++|+.+...+...+.+..+...++ ..+.++...... +...++..++...
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~ 85 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA 85 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence 4566566 6888889888864 2346666665444444444444332222 234444433322 3567777887777
Q ss_pred cCCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
..+ .++++..|.+...+ +..+++.+.+.+
T Consensus 86 ~~d---~i~~lD~D~~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 86 RGD---YILFLDDDTVLDPDWLERLLAAFADPG 115 (228)
T ss_dssp --S---EEEEE-SSEEE-CHHHHHHHHHHHBSS
T ss_pred CCC---EEEEECCCcEECHHHHHHHHHHHHhCC
Confidence 643 89999999977655 788888883333
|
|
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
Probab=84.78 E-value=17 Score=30.16 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=59.5
Q ss_pred ceeCCc-chHHHHHHHHHHcCC---CEEEEEeccChHHHHHHHHHhhhcc---CeEEEEee--CCcccCChHHHHHHHhh
Q 020113 26 VDFANK-PMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKKL---EIKITCSQ--ETEPLGTAGPLALARDK 96 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi---~~i~iv~~~~~~~i~~~~~~~~~~~---~~~v~~~~--~~~~~G~~~al~~~~~~ 96 (331)
+|.-|. ..|..+|+.+.+... -+++|+-+...+...+.++++..+. ++.+.... .....|.+.+...+++.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~ 82 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQ 82 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHh
Confidence 444444 688999998877532 2666655443344444555443221 23332222 12345777777777776
Q ss_pred ccCCCCCcEEEEeCCeeccc-cHHHHHHHHhhcCC
Q 020113 97 LIDDSGEPFFVLNSDVISEY-PLKQMIEFHRGRGG 130 (331)
Q Consensus 97 ~~~~~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~~ 130 (331)
.+.+ .++++.+|.+... .+..++..+.+...
T Consensus 83 a~gd---~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 83 SSGR---YLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred cCCC---EEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 6543 8889999986554 47777777765443
|
This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified. |
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
Probab=83.64 E-value=14 Score=30.91 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=55.1
Q ss_pred CCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 29 ANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 29 ~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
.+. ..|..+|+.+.+. ..+++|+=+...+..... .+. ....+.++..+...|-+.+...+.+.......|.+++
T Consensus 7 n~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~-~~~---~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~ 81 (237)
T cd02526 7 NPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELR-LRL---NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLL 81 (237)
T ss_pred cCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHH-hhc---cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEE
Confidence 455 7888999998876 456666544322222222 221 1234555555566788888888888775422238999
Q ss_pred EeCCeecccc-HHHHH
Q 020113 108 LNSDVISEYP-LKQMI 122 (331)
Q Consensus 108 ~~~D~i~~~~-l~~~l 122 (331)
+.+|.....+ +..++
T Consensus 82 lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 82 FDQDSVPPPDMVEKLL 97 (237)
T ss_pred ECCCCCcCHhHHHHHH
Confidence 9999976655 67775
|
Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.27 E-value=1.6 Score=44.88 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=39.4
Q ss_pred CceEeCCEEcCCCEECCCcE-EccceEECCCcEECcccEEcCcEEcc-CeEEccCc
Q 020113 271 HACISSSIIGWHSTVGRWAR-VENMTILGEDVHVADEVYSNGAVVLP-HKEIKSSI 324 (331)
Q Consensus 271 ~~~i~~s~i~~~~~ig~~~~-i~~~~~i~~~~~i~~~~~i~~~~v~~-~~~i~~~~ 324 (331)
.+.|.+|++..++.+|+++. |.+ |.|+.++.||++++|.++...+ +.+|++++
T Consensus 331 ~~~v~ns~~~~~~s~~~~s~~vE~-s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ 385 (974)
T PRK13412 331 AMFVQNAVLSGKLTAENATLWIEN-SHVGEGWKLASRSIITGVPENSWNLDLPEGV 385 (974)
T ss_pred ceEEEeeEecCCcccCCCeEEEEe-eEecCCeEEcCCcEEecccccccceecCCCc
Confidence 35678899999999998855 666 9999999999999998775322 24444443
|
|
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.06 E-value=22 Score=36.55 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=61.8
Q ss_pred CceeCCcc--hHHHHHHHHHHcCC--C--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC-cccCChHHHHHHHhhc
Q 020113 25 LVDFANKP--MILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET-EPLGTAGPLALARDKL 97 (331)
Q Consensus 25 llpi~g~p--li~~~l~~l~~~gi--~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-~~~G~~~al~~~~~~~ 97 (331)
++|..|.+ ++..++..+.+... + +|+|+-+...++..+..++. + +.++..+ ...+-++++..+++..
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~----~--v~yI~R~~n~~gKAGnLN~aL~~a 338 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----G--VKYIARPTHEHAKAGNINNALKYA 338 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC----C--cEEEEeCCCCcchHHHHHHHHHhC
Confidence 45556876 67788887765432 1 56666554556666666552 3 3344332 3345678888888876
Q ss_pred cCCCCCcEEEEeCCeecccc-HHHHHHHHhhcCC
Q 020113 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~ 130 (331)
+.+ .++++.+|.+...+ ++.++..+.+...
T Consensus 339 ~GE---yIavlDAD~ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 339 KGE---FVAIFDCDHVPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred CCC---EEEEECCCCCCChHHHHHHHHHHHhCCC
Confidence 543 89999999987655 6777776655443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 331 | ||||
| 1tzf_A | 259 | X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph | 9e-23 | ||
| 2ggo_A | 401 | Crystal Structure Of Glucose-1-Phosphate Thymidylyl | 4e-19 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 3e-10 | ||
| 1jyk_A | 254 | Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt | 4e-10 | ||
| 1jyl_A | 254 | Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt | 4e-10 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 5e-10 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 9e-10 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 1e-09 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 2e-09 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 2e-09 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 5e-09 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 9e-09 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 1e-08 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 1e-08 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 1e-08 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 1e-08 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 1e-08 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 1e-08 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 1e-08 | ||
| 1mc3_A | 296 | Crystal Structure Of Rffh Length = 296 | 2e-08 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 5e-08 | ||
| 3fww_A | 456 | The Crystal Structure Of The Bifunctional N-Acetylg | 7e-08 | ||
| 2v0h_A | 456 | Characterization Of Substrate Binding And Catalysis | 2e-07 | ||
| 4fce_A | 459 | Crystal Structure Of Yersinia Pestis Glmu In Comlex | 3e-07 | ||
| 2ux8_A | 297 | Crystal Structure Of Sphingomonas Elodea Atcc 31461 | 4e-06 | ||
| 3juj_A | 281 | The Crystal Structure Of Apo- Udp-Glucose Pyrophosp | 8e-06 | ||
| 2qkx_A | 391 | N-Acetyl Glucosamine 1-Phosphate Uridyltransferase | 1e-05 | ||
| 2e3d_A | 302 | Crystal Structure Of E. Coli Glucose-1-Phosphate Ur | 2e-05 | ||
| 3spt_A | 501 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 2e-05 | ||
| 3d8v_A | 495 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 2e-05 | ||
| 3foq_A | 503 | Crystal Structure Of N-Acetylglucosamine-1-Phosphat | 2e-05 |
| >pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259 | Back alignment and structure |
|
| >pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254 | Back alignment and structure |
|
| >pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional N-Acetylglucosamine-1- Phosphate UridyltransferaseGLUCOSAMINE-1-Phosphate Acetyltransferase From Yersinia Pestis Co92 Length = 456 | Back alignment and structure |
|
| >pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The Potential Antibacterial Target N-Acetylglucosamine-1- Phosphate Uridyltransferase (Glmu) Length = 456 | Back alignment and structure |
|
| >pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With Alpha-D- Glucosamine 1-Phosphate (Gp1) Length = 459 | Back alignment and structure |
|
| >pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461 Glucose- 1-phosphate Uridylyltransferase In Complex With Glucose- 1-phosphate. Length = 297 | Back alignment and structure |
|
| >pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose Pyrophosphorylase Length = 281 | Back alignment and structure |
|
| >pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391 | Back alignment and structure |
|
| >pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate Uridylyltransferase Length = 302 | Back alignment and structure |
|
| >pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501 | Back alignment and structure |
|
| >pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495 | Back alignment and structure |
|
| >pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 2e-66
Identities = 48/243 (19%), Positives = 97/243 (39%), Gaps = 27/243 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 85
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
++K +++ + + L L +++L + + + + + +
Sbjct: 86 ----DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYLFK----N 133
Query: 121 MIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSV 180
M R S+ ++ + +V + KV+ + K +I +G+ +
Sbjct: 134 MFRNDLTRSTYFSVYREDCTNEWFLVYGD-DYKVQDIIVDSKA---GRILSGVSFWDAPT 189
Query: 181 LDRI----------ELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYITGLRL 229
++I + + E ++ L G +I +DY +
Sbjct: 190 AEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEI 249
Query: 230 YLD 232
+
Sbjct: 250 LKN 252
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 4e-66
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 18/225 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL G GTRL + PKPLV +IL ++ L V+E ++ + + +
Sbjct: 19 MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSP-HVSEFIIVASRYADDI 73
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
FLK+ KI E G L +A++ + + F + D + +
Sbjct: 74 DAFLKDK--GFNYKIVRHDRPE-KGNGYSLLVAKNHV----EDRFILTMGDHVYSQQFIE 126
Query: 121 MIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSV 180
G + + + + +E+ G+V K + + + ++ G ++L+ S+
Sbjct: 127 KAVRGEGVIADREPRFVDIGEATKIRVED--GRVAKIGKDLRE--FDCVDTGFFVLDDSI 182
Query: 181 LDRIELKPTSIEKEVFPEIAAENKLFAMVLP-GFWMDIGQPKDYI 224
+ E K E+ EI +L + WMD+ +D
Sbjct: 183 FEHAE-KLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVR 226
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 4e-64
Identities = 86/337 (25%), Positives = 151/337 (44%), Gaps = 49/337 (14%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA IL G G RL P+T + PK V +KP+I +QIE L+ G+ ++ + ++ + +
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58
Query: 61 LNFLKEFEKKLEIKIT-CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYP 117
E+ +K +I+ +Q+ + GT + A+ + ++ D+ +E
Sbjct: 59 -----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFN------DEALIIYGDLFFSNEKE 107
Query: 118 LKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
+ +I E +I+ V P YGV+V++ + K +EKP+ N INAGIY
Sbjct: 108 ICNIITLK-----ENAIIGVKVSNPKDYGVLVLDN-QNNLSKIIEKPEIPPSNLINAGIY 161
Query: 175 LLNPSVLDRIELKPTSIEKEV----FPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRL 229
LN + ++ S E+ + A++ ++ + G+WMDIG+P + I +
Sbjct: 162 KLNSDIFTYLDKISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKW 221
Query: 230 YLD-FLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRW 288
LD + + + I G V++ E A+I G I IG S +G
Sbjct: 222 ALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYI-------EGPVYIGKGSEIGPN 274
Query: 289 ARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325
+ + TIL E + V E+K S++
Sbjct: 275 SYLRPYTILVEKNKIGASV-----------EVKESVI 300
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 4e-52
Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 28/250 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KA+IL GG GTRL T+ PKP+V+ KP++ H ++ G+ + ++ Y+ V+
Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 61 LNFLKEF--------------------EKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100
+ + ++ +T + T G L + +
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYV--K 120
Query: 101 SGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMV-DEPSKYGVVVMEETTGKVEKFVE 159
E F D +++ +K I+FH+ G +A++ P ++G + + G+V F E
Sbjct: 121 DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGAL--DIQAGQVRSFQE 178
Query: 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFW--MDI 217
KPK G IN G ++LNPSV+D I+ T+ E+E +A + +L A PGFW MD
Sbjct: 179 KPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT 237
Query: 218 GQPKDYITGL 227
+ K Y+ GL
Sbjct: 238 LRDKVYLEGL 247
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-41
Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 23/187 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M ALI+ GG GTR+ + KPL+ + +I + + L V + +A +
Sbjct: 1 MDALIMAGGKGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP--L 118
++ K + K +T G L EPF V++SD+I+ +
Sbjct: 57 KEYINSAYK--DYKNIVVIDTSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKII 110
Query: 119 KQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
++++ + P + VM P + A I +++P
Sbjct: 111 NSIVDYFYCIKAKT------PDVEALAVMIPKEKY-----PNPSIDFNGLVPADINVVSP 159
Query: 179 SVLDRIE 185
+ E
Sbjct: 160 KHGYQKE 166
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 90.1 bits (222), Expect = 4e-21
Identities = 41/255 (16%), Positives = 77/255 (30%), Gaps = 24/255 (9%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
+I + G +R + PK +++ + + H + + A + L I F
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVF 62
Query: 64 LKEFEKKLEIK--ITCSQETEPLGTAGPLALARDKLID---DSGEPFFVLNSDVISEYPL 118
++E +L IK TE G A + L ++L D V N D +
Sbjct: 63 VREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFV 122
Query: 119 KQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
I H E + + G + KN + + + G+Y N
Sbjct: 123 FPDISQHSDGYLEVFQGGGDNWSFAKPEH---AGSTKVIQTAEKNPISDLCSTGLYHFNR 179
Query: 179 SVLDRIELKPTSIEKEVFPEIAAE-------NKL--------FAMVLPGFWMDIGQPKDY 223
+ + + E N+L + ++ + G P +Y
Sbjct: 180 KEDYLEAYR-EYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEY 238
Query: 224 ITGLRLYLDFLQKNS 238
LR +
Sbjct: 239 TDFLRQPQPLEHHHH 253
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 13/190 (6%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
L+L G GTR+R PK L A + M+ H + A+ + +++ + + + +
Sbjct: 13 TAVLVLAAGPGTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRI 69
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
+ E L I + + PLGT + L DD V + D + L
Sbjct: 70 APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 129
Query: 119 KQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE----KPKNFVGNKINA 171
+I HR +++ +D+P YG ++ + +V VE P ++NA
Sbjct: 130 ADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQ-DHEVMAIVEQTDATPSQREIREVNA 188
Query: 172 GIYLLNPSVL 181
G+Y + + L
Sbjct: 189 GVYAFDIAAL 198
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 25/89 (28%)
Query: 251 NVLVHEGAKIGDGCLIGPD--------------KHACISSSIIGWHSTVGRWARVENMTI 296
+ +IG C++GPD SSS IG + VG + + T
Sbjct: 295 GTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTA 354
Query: 297 LGEDVHVADEVYSNGAVVLPHKEIKSSIV 325
LG D + GA V E+K+S +
Sbjct: 355 LGADGKL-------GAFV----EVKNSTI 372
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 4e-16
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 21/188 (11%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L A M+ H ++ A+ + V + ++ E++
Sbjct: 14 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 70
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
L + ++E LGT + + L SG V+ D I+ LK
Sbjct: 71 VLAG-------QTEFVTQSEQLGTGHAVMMTEPILEGLSG-HTLVIAGDTPLITGESLKN 122
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE----KPKNFVGNKINAGI 173
+I+FH A+I+ D P YG +V + +V + VE +IN G
Sbjct: 123 LIDFHINHKNVATILTAETDNPFGYGRIVRND-NAEVLRIVEQKDATDFEKQIKEINTGT 181
Query: 174 YLLNPSVL 181
Y+ + L
Sbjct: 182 YVFDNERL 189
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 25/92 (27%)
Query: 248 IIGNVLVHEGAKIGDGCLIGPD--------------KHACISSSIIGWHSTVGRWARVEN 293
I NV++ KIG ++ ++ I S + TVG +A +
Sbjct: 283 IEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRP 342
Query: 294 MTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325
+ LG VH+ G V E+K S +
Sbjct: 343 NSSLGAQVHI-------GNFV----EVKGSSI 363
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 6e-16
Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 66/231 (28%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
KA+ V G GTR P T ++PK P+VD +P+I + ++ G+ +++
Sbjct: 16 KAVFPVAGLGTRFLPATKAMPKEMLPVVD---RPLIQYAVDEAVEAGIEQMIFVTGRGKS 72
Query: 52 AI------NYQPEVMLNFLKEFEKKLEIK-------ITCS---QETEPLGTAGPLAL--- 92
A+ Y+ E + K L++ + Q EP+G L
Sbjct: 73 ALEDHFDIAYELE---ATMAARGKSLDVLDGTRLKPGNIAYVRQ-QEPMG------LGHA 122
Query: 93 ---ARDKLIDDSGEPFFVLNSDVI--SEYP-LKQMIEFHRGRGGEASIMV-----DEPSK 141
AR ++ D EPF VL D + LKQM++ + GG I D+ +
Sbjct: 123 VWCAR-DIVGD--EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHR 178
Query: 142 YGVVVMEETTG---KVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 185
YG++ G +V+ VEKP G N G Y+L P V+ +E
Sbjct: 179 YGIITPGTQDGVLTEVKGLVEKPA--PGTAPSNLSVIGRYILQPEVMRILE 227
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 2e-15
Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 59/229 (25%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
K L G+GTR P+T ++PK P+VD KP+I + +E G + +
Sbjct: 4 KCLFPAAGYGTRFLPITKTIPKEMLPIVD---KPLIQYAVEEAMEAGCEVMAIVTGRNKR 60
Query: 52 AI------NYQPEVMLNFLKEFEKKLEIKITCSQETEPLGT------AGPLAL------A 93
++ +Y+ E + ++ K+ +K + L
Sbjct: 61 SLEDYFDTSYEIE---HQIQGTNKENALKSI--RNIIEKCCFSYVRQKQMKGLGHAILTG 115
Query: 94 RDKLIDDSGEPFFVLNSDVI----SEYP-LKQMIEFHRGRGGEASIMV-----DEPSKYG 143
LI + EPF V+ +D + LKQM ++ + + +E SKYG
Sbjct: 116 E-ALIGN--EPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSI-VAIEEVALEEVSKYG 171
Query: 144 VVVMEETTG---KVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 185
V+ E +++ VEKP N G Y+L P + + +
Sbjct: 172 VIRGEWLEEGVYEIKDMVEKPN--QEDAPSNLAVIGRYILTPDIFEILS 218
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ A+IL G GTR+ +PK L A KPM+ H I+ +G + L + ++M
Sbjct: 6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + +TE LGTA + A D+ E VL D I++ L
Sbjct: 63 RTHLANEQ------VNWVLQTEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114
Query: 119 KQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE----KPKNFVGNKINA 171
+++IE G +++ +D P+ YG ++ E G V VE + ++N
Sbjct: 115 EKLIEAKPENG--IALLTVNLDNPTGYGRIIREN--GNVVAIVEQKDANAEQLNIKEVNT 170
Query: 172 GIYLLNPSVL 181
G+ + + +
Sbjct: 171 GVMVSDGASF 180
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 24/190 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A KPM+ H I+A +G V L + E++
Sbjct: 9 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELL 65
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + + E LGT + A DD E +L DV IS L
Sbjct: 66 KKTLADPS------LNWVLQAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 117
Query: 119 KQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE----KPKNFVGNKINA 171
++++ G ++ +D PS YG +V E G V VE N+IN
Sbjct: 118 QRLLAAKPEGG--IGLLTVKLDNPSGYGRIVREN--GDVVGIVEHKDASDAQREINEINT 173
Query: 172 GIYLLNPSVL 181
GI + N L
Sbjct: 174 GILVANGRDL 183
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 7e-14
Identities = 63/237 (26%), Positives = 92/237 (38%), Gaps = 70/237 (29%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
KA+I V G GTR+ P T ++PK PLVD KP+I + + A G+TE+VL
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVD---KPLIQYVVNECIAAGITEIVLVTHSSKN 66
Query: 52 AI------NYQPEVML------NFLKEFEKKLEIKITCS---QETEPLGTAGPLAL---- 92
+I +++ E ML L E + +T Q G L
Sbjct: 67 SIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQG-LAKG------LGHAV 119
Query: 93 --ARDKLIDDSGEPFFVLNSDVI--------SEYPLKQMIEFHRGRGGEASIM----VDE 138
A ++ D EP V+ DVI S+ L +MI G S + V +
Sbjct: 120 LCAH-PVVGD--EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH--SQIMVEPVAD 174
Query: 139 PSKYGVVVMEETTG------KVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 185
+ YGVV + + VEKPK N G Y+L+ + +
Sbjct: 175 VTAYGVVDCKGVELAPGESVPMVGVVEKPK--ADVAPSNLAIVGRYVLSADIWPLLA 229
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 3e-13
Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 50/225 (22%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
++ G GTR P T +VPK P+VD P I +G T + +
Sbjct: 14 TVVVPAAGLGTRFLPATKTVPKELLPVVD---TPGIELIAAEAAELGATRLAIITAPNKA 70
Query: 52 AI------NYQPEVML------NFLKEFEKKLEIKITCS---QETEPLGTAGPLALARDK 96
+ + + E L + ++ + ++ I Q+ +PLG + LA
Sbjct: 71 GVLAHFERSSELEETLMERGKTDQVEIIRRAADL-IKAVPVTQD-KPLGLGHAVGLAES- 127
Query: 97 LIDDSGEPFFV-LNSDVISEYP-LKQMIEFHRGRGGEASIMV-----DEPSKYGVV---- 145
++DD + V L D++ +++M + GG + + + SKYG+
Sbjct: 128 VLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEA 186
Query: 146 -VMEETTGKVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 185
+ KV+ VEKP + G YLL+ + D +
Sbjct: 187 DTKDSDVKKVKGMVEKPA--IEDAPSRLAATGRYLLDRKIFDALR 229
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 45/239 (18%), Positives = 88/239 (36%), Gaps = 49/239 (20%)
Query: 120 QMIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINA--- 171
M++ H G + +I E + +GV+ + E ++ F+EKP + G N
Sbjct: 144 YMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK-DEIIDFIEKPADPPGIPGNEGFA 202
Query: 172 ----GIYLLNPSVL----DRIELKPTSIE---KEVFPEIAAENKLFA-----------MV 209
GIY+ + L R PTS K++ P I K A
Sbjct: 203 LASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFE 262
Query: 210 LPGFWMDIGQPKDY------ITGLRLYLDFLQKN----SSSKLATGSNIIGNVLVHEG-- 257
+W D+G Y +T + LD K+ + +++ + + + G
Sbjct: 263 HEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA 322
Query: 258 --AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVV 314
+ + C+I A ++ S++ ++R+EN ++ V + + V+
Sbjct: 323 VSSVVSGDCII---SGAALNRSLLFTGVRANSYSRLEN-AVVLPSVKIGRHAQLSNVVI 377
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK 31
A +L GG G+RL+ LT KP V F K
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGK 43
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 3e-11
Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 48/229 (20%)
Query: 120 QMIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINA--- 171
+ I+ HR + ++ + +G++ ++E G++ +F EKP+ +
Sbjct: 154 KFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTT 212
Query: 172 ------------------GIYLLNPSVL-DRIELKPTSIE---KEVFPEIAAEN-KLFAM 208
GIY+++ V+ + + K EV P + ++ A
Sbjct: 213 ILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAY 272
Query: 209 VLPGFWMDIGQPKDY-------ITGLRLYLDFLQKN----SSSKLATGSNIIGNVLVHEG 257
+ G+W DIG + + F ++ + + S ++ +
Sbjct: 273 LYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD-- 330
Query: 258 AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADE 306
+ IG+GC+I K+ I S++G S + A +E+ ++G D + D
Sbjct: 331 SVIGEGCVI---KNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 376
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 2e-10
Identities = 41/285 (14%), Positives = 80/285 (28%), Gaps = 70/285 (24%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
MK +L G G+R +L + ++ + + G +V I + E
Sbjct: 4 MKPTLFVLAAGMGSRYG--SLKQLDGIGP-GGDTIMDYSVYDAIRAGFGRLVFVIRHSFE 60
Query: 59 VML--NFLKEFEKKLEIK-------------ITCSQETEPLGTAGPLALARDKLIDDSGE 103
L ++E ++ ++ +P GT + + RD + E
Sbjct: 61 KEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI----RE 116
Query: 104 PFFVLNSD----VISEYPLKQMIEFHRGRGGEASIMV---------DEPSKYGVVVMEET 150
PF V+N+D L + + G+ GE ++ GV ++E
Sbjct: 117 PFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEK 176
Query: 151 --------TGKVEKFVEKPKNFVGNK----------INAGIYLLNPSVLDRIELKPTSIE 192
+E+ ++ ++ P D E +
Sbjct: 177 HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFL 236
Query: 193 KEVFPEIAAE-------------NKLFAMVLP--GFWMDIGQPKD 222
E +E + VL W + D
Sbjct: 237 NAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDD 281
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 5e-10
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 24/142 (16%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
M+ A++L GG + K LV + +PM+ +EAL A G++ V + N
Sbjct: 1 MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59
Query: 59 VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEY 116
+ G L + ++ V D+ ++E
Sbjct: 60 ------------------PAPALTLPDRGGLLENLE-QALEHVEGRVLVATGDIPHLTEE 100
Query: 117 PLKQMIEFHRGRGGEASIMVDE 138
++ +++ I+ E
Sbjct: 101 AVRFVLDKAPEAALVYPIVPKE 122
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 7e-10
Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
++L G RL PK L+ + + ++ ++ + G +++L +
Sbjct: 8 GVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASA--- 59
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
++ + ++ E G A L +A ++ ++ D ++ L++
Sbjct: 60 -VRAAMALDGTDVVVVEDVE-RGCAASLRVALARV-HPRATGIVLMLGDQPQVAPATLRR 116
Query: 121 MIEFHRGRG 129
+I+
Sbjct: 117 IIDVGPATE 125
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 60/239 (25%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG G+RL P+T K L+ PMI H + LK +T+ ++ I E M
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITD-IMIIT-GKEHM 82
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV------ 112
+ + ++ + T + + G A L L D FV N +
Sbjct: 83 GDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCED----------FVGNDRMVVILGD 132
Query: 113 -ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNK 168
I ++ +E + A ++ VD+P ++GV K+ + EKPK +
Sbjct: 133 NIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVA--NIQNRKIIEIEEKPKEPKSSY 190
Query: 169 INAGIYLLNPSVLD---------RIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIG 218
GIYL + V R EL+ T I L + G+W D G
Sbjct: 191 AVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYL----KRGVLTYNEMSGWWTDAG 245
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-08
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 13/127 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
++L G+ RL PK L+ + ++ + + ++++ + +
Sbjct: 8 GVVLAAGYSRRLG-----TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADE--- 59
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ E + + I + LG + L A + D + E ++ D I+ +
Sbjct: 60 -VLEKVELDGLDIVLVDDAG-LGCSSSLKSALTWV-DPTAEGIVLMLGDQPGITASAVAS 116
Query: 121 MIEFHRG 127
+I RG
Sbjct: 117 LIAGGRG 123
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-07
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E +L I+ P+
Sbjct: 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIRE-ILIIS-TPQDT 60
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPL 118
F + + + + + P G A + + +D VL ++ +
Sbjct: 61 PRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDF 118
Query: 119 KQMIEFHRGRGGEASI---MVDEPSKYGVVVMEETTGKVEKFVEKPKN 163
+++ R AS+ V +P +YGVV ++ GK EKP
Sbjct: 119 HELLGSASQRQTGASVFAYHVLDPERYGVVEFDQ-GGKAISLEEKPLE 165
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-07
Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 25/234 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRL P+T V K L+ +KPMI + + L G+ E +L I PE
Sbjct: 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIRE-ILIIT-TPEDK 61
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPL 118
F + + I++ +++ P G A + L + VL ++
Sbjct: 62 GYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSC--LVLGDNIFFGQGF 119
Query: 119 KQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYL 175
+ R A++ V +P ++GVV ++ + EKPK N G+Y
Sbjct: 120 SPKLRHVAARTEGATVFGYQVMDPERFGVVEFDD-NFRAISLEEKPKQPKSNWAVTGLYF 178
Query: 176 LNPSVLD---------RIELKPTSIEKEVFPEIAAENKLFAMVLP-GF-WMDIG 218
+ V++ R EL+ TSI + L +L GF W+D G
Sbjct: 179 YDSKVVEYAKQVKPSERGELEITSINQMYL----EAGNLTVELLGRGFAWLDTG 228
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 9e-07
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMI 34
MK ++L GG GTRL P+T +V K L+ +KPMI
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMI 37
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 58/365 (15%), Positives = 99/365 (27%), Gaps = 131/365 (35%)
Query: 12 TRLRPLTLSVPKP---LV--DFANKPMILHQIEALKA-------------VGVTEVVLAI 53
LR L S P LV + N +A A VT+ + A
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNA-------KAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 54 NYQPEVMLNFLKEFEKK--LEI---KITCSQETEP--LGTAGPLALA------------- 93
+ + + + C + P + T P L+
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 94 -------RDKL---IDDSGE---P---------FFVLNSDV-ISEYPLK----QMIEFHR 126
DKL I+ S P V I L +I+
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-- 402
Query: 127 GRGGEASIMVDEPSKYGVV-------------VMEETTGKVE-------KFVEK---PKN 163
+ ++V++ KY +V + E K+E V+ PK
Sbjct: 403 ----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 164 FVGNKINAGIYLLNPSVLDR-----I--ELKPTSIEKEV--FPEIAA-----ENKLFAMV 209
F + L P LD+ I LK + + F + E K+
Sbjct: 459 FDSDD-------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 210 LPGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD 269
W G + + L+ Y ++ N + I+ + KI + +
Sbjct: 512 TA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP-----KIEENLIC--S 562
Query: 270 KHACI 274
K+ +
Sbjct: 563 KYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 31/236 (13%), Positives = 71/236 (30%), Gaps = 64/236 (27%)
Query: 55 YQPEVMLNFLKEFEKKLEIK--------ITCSQETEPLGTAGPLALARDKLID---DSGE 103
Y+ +++ F F + K I +E + + + +L E
Sbjct: 18 YK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 104 P----FF--VLNSDVISEYP-LKQMIEFH-RGRGGEASIMVDEPSKYGVVVMEETTGKVE 155
F VL + Y L I+ R + +++ + +
Sbjct: 77 EMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFA 127
Query: 156 K-FVEKPKNFVGNKINAGIYLLNP--------------SVLDRIELKPTSIEKEVFPEIA 200
K V + + + K+ + L P + + ++ ++ +I
Sbjct: 128 KYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI- 184
Query: 201 AENKLFAMVLPGFWMDIGQ---PKDYITGL-RLYLDFLQKNSSSKLATGSNIIGNV 252
FW+++ P+ + L +L + N +S+ SNI +
Sbjct: 185 ------------FWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRI 227
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
M +IL G G R K L N P+I+ I + +V Y E
Sbjct: 1 MNIGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDLEKIIIVGK--YVNE 53
Query: 59 VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEY 116
++ ++ + + G + L L D V D+ +++
Sbjct: 54 ML-------PLLMDQIVIYNPFWN-EGISTSLKLGLRFFKDYDA--VLVALGDMPFVTKE 103
Query: 117 PLKQMIEFHRGRG 129
+ ++I +
Sbjct: 104 DVNKIINTFKPNC 116
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Length = 208 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +LVGG G R+ + K V K +I +E T V Q E
Sbjct: 1 MKVAVLVGGVGRRI-----GMEKTEVMLCGKKLIEWVLEKYSPF-QTVFVCRDEKQAE-- 52
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLA 91
+ + E + + G +A
Sbjct: 53 -----KLSSRYEAEFI----WDLHKGVGSIA 74
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-05
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
++L GG G R++ S+PK + +P+ L+ + V E+V+
Sbjct: 7 VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVC---DPFFR 60
Query: 62 NFLKEFEKKLEIKIT 76
+ +E+E+ +++ ++
Sbjct: 61 DIFEEYEESIDVDLS 75
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-05
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP 57
M A++ G G RLR PK V P++ H + L+A G + +V+A+ P
Sbjct: 1 MATVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAV---P 54
Query: 58 EVMLNFLKEFEKKLEIKITC 77
+ + K + I
Sbjct: 55 PALTDESKLVFGGEDSVIVS 74
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 245 GSNIIGNVLVHEGAKIGDGCLIGPDKHACISS-SIIGWHSTVGRWARVENMTILGEDVHV 303
+ I +V EGA+IG I I + IG ++G+ V N +G V +
Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWH--WVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKI 60
Query: 304 ADEVY-SNGAVVLPHKEIKSSIV 325
+ V + + S+V
Sbjct: 61 QNNVSVYDNVFLEDDVFCGPSMV 83
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 236 KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMT 295
++ + G I+ V+++ AKI G ++ +SS+I +G ++ V
Sbjct: 86 PSAIVEENAGILIMPYVVINAKAKIEKGVILN-------TSSVIEHECVIGEFSHVSVGA 138
Query: 296 ILGEDVHVADEVY-SNGAVVLPHKEI-KSSIV 325
+V + + + VLP+ + SI+
Sbjct: 139 KCAGNVKIGKNCFLGINSCVLPNLSLADDSIL 170
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ ++L GG R+ V K L++ KP+ H +AL ++ VV+ N E+
Sbjct: 7 ITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEIY 61
Query: 61 LNF 63
Sbjct: 62 QAS 64
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
A++L G G R+ +VPK ++ + + + + + VV+ + ++
Sbjct: 16 AILLAAGKGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVV 72
Query: 62 NFLKEFEKKLEI 73
EK L I
Sbjct: 73 EKRVFHEKVLGI 84
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
A IL GG GTR+ +S+PK + KP+I+H +E +++++
Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSP 56
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
A++ GFG R++ PK + N+ ++ H + AL A V VV+AI+
Sbjct: 10 AVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAIS 59
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
ALI G G R PK V+ +K ++ H + + V V+ ++
Sbjct: 9 ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVS 58
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVML 61
++L G TR V K + N P+ L+ + L + ++V+ +
Sbjct: 6 LIMLAAGNSTRFN---TKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI----- 57
Query: 62 NFLKEFEKKLEI 73
++K+F K E
Sbjct: 58 TYMKKFTKNYEF 69
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTIL 297
S +L G ++ V ++ + IGD +I + +++ +G + + L
Sbjct: 110 PSVRLGEGVAVMAGVAINADSWIGDLAIIN-------TGAVVDHDCRLGAACHLGPASAL 162
Query: 298 GEDVHVADEVY-SNGAVVLPHKEI-KSSIV 325
V V + + GA V+P I +IV
Sbjct: 163 AGGVSVGERAFLGVGARVIPGVTIGADTIV 192
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN 54
A++ G G RL VPK + +I ++ L G V VV+A+
Sbjct: 10 AIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVP 59
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN-YQPEVM 60
A IL GG GTR+ +PK ++ ++P+++H IE + ++V+ ++
Sbjct: 5 AGILAGGTGTRMGISN--LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62
Query: 61 LNFLKEFEKKLEIKIT 76
+ + ++ + +I
Sbjct: 63 EDLVDKYLPLYKERII 78
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLA 52
KPL D KPMI E G V++A
Sbjct: 19 KPLADIGGKPMIQWVYEQAMQAGADRVIIA 48
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 6e-04
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL+D KPMI H E AL+ GV EV +A
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVA 49
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Length = 253 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 8e-04
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL+ ++PMIL ++ A K G ++ +A
Sbjct: 18 KPLLLIHDRPMILRVVDQAKKVEGFDDLCVA 48
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 100.0 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 100.0 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 100.0 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.97 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.96 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.96 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.93 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.92 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.92 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.91 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.91 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.9 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.88 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.86 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.86 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.86 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.84 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.83 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.83 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.82 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.82 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.81 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.8 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.8 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.79 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.79 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.76 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.74 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.74 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.7 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.69 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.68 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.67 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.67 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.66 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.6 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.49 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.44 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.44 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.42 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.42 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.34 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.33 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.25 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.25 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.24 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.24 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.24 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.23 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.21 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.21 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.21 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.2 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.2 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.2 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.2 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.2 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.2 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.19 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.19 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.18 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.18 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.18 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.18 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.18 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.17 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.17 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.17 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.17 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.17 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.16 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.15 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.15 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.15 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.14 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.14 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.14 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.13 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.13 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.13 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.13 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.13 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.12 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.12 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.11 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.11 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.11 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.11 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.1 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.1 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 99.1 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.1 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.09 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.09 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.09 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.09 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.09 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 99.08 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.08 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.07 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.07 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 99.07 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.06 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.06 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.06 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.06 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.06 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 99.05 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.05 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.05 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.04 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.04 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.04 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.04 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.03 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.03 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.01 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.01 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.01 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.0 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.99 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.98 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.97 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.97 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.97 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 98.95 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.94 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.92 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.92 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.92 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 98.91 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.9 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.9 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.87 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.87 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.84 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.83 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.83 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.79 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.78 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.73 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.73 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.58 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.57 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.54 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.52 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.44 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.41 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.38 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.22 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.92 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 97.81 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.51 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 96.79 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 94.47 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 93.87 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 93.09 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 88.83 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 86.59 | |
| 3ckj_A | 329 | Putative uncharacterized protein; mycobacteria, un | 81.41 |
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=363.65 Aligned_cols=321 Identities=21% Similarity=0.314 Sum_probs=252.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-hhhc---cCeEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEKK---LEIKI 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~---~~~~v 75 (331)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+ |.-. ....+
T Consensus 13 ~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~v 92 (420)
T 3brk_X 13 AMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESF 92 (420)
T ss_dssp EEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEE
T ss_pred eEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhccccccccCCE
Confidence 5799999999999999999999999999999 99999999999999999999999888888888876 2200 01123
Q ss_pred EEee--CC--cc---cCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCce
Q 020113 76 TCSQ--ET--EP---LGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYG 143 (331)
Q Consensus 76 ~~~~--~~--~~---~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~ 143 (331)
.++. +. .+ .|++++++.+++.+.....++|++++||.+++.++.++++.|.+.++++++. . +++..|+
T Consensus 93 ~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g 172 (420)
T 3brk_X 93 DILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFG 172 (420)
T ss_dssp EEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSE
T ss_pred EEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCccc
Confidence 3332 11 23 7999999999998863212389999999999889999999999888888776 2 3566899
Q ss_pred EEEEcCCcCceeEeeecCCCCC-------CCeEEEEEEEEChhhHh-hccc------CCCCcccchHHHHHhcCcEEEEE
Q 020113 144 VVVMEETTGKVEKFVEKPKNFV-------GNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAAENKLFAMV 209 (331)
Q Consensus 144 ~v~~d~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~~~l~~l~~~~~i~~~~ 209 (331)
++.+|++ +++..|.|||..+. +.+.++|+|+|++++|. .+.. ...++..++++.++++++++++.
T Consensus 173 ~v~~d~~-g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v~~~~ 251 (420)
T 3brk_X 173 VMHVNEK-DEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHR 251 (420)
T ss_dssp EEEECTT-SBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCEEEEE
T ss_pred EEEECCC-CcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcEEEEE
Confidence 9999887 89999999986544 67999999999999874 4432 12345568888888888999999
Q ss_pred e-----------CceEEecCCHHHHHHHHHHHHhhhcc----ccCCccCCCceEecceEEcC----------CcEECCCc
Q 020113 210 L-----------PGFWMDIGQPKDYITGLRLYLDFLQK----NSSSKLATGSNIIGNVLVHE----------GAKIGDGC 264 (331)
Q Consensus 210 ~-----------~~~~~~i~t~~d~~~a~~~~l~~~~~----~~~~~i~~~~~i~~~~~i~~----------~~~i~~~~ 264 (331)
+ +++|.|++||+||.++++.++.+... .....+...+.+.+++.|++ ++.||++|
T Consensus 252 ~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~ 331 (420)
T 3brk_X 252 FADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDC 331 (420)
T ss_dssp HHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEEESCEECSSC
T ss_pred eccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEecccccCCcEecCCEECCCC
Confidence 9 88999999999999999988765421 11122334444555555554 88888888
Q ss_pred EECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 265 LIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 265 ~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+| .++.|.+|+||++|.||++|.|.+ |+|+++|+||+++.|.+++|+++++|+++...
T Consensus 332 ~I---~~~~i~~~~ig~~~~I~~~~~i~~-~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i 389 (420)
T 3brk_X 332 II---SGAALNRSLLFTGVRANSYSRLEN-AVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIV 389 (420)
T ss_dssp EE---ESCEEESCEECTTCEECTTCEEEE-EEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred EE---cCCEEeCcEEcCCCEECCCCEEcc-eEEcCCCEECCCCEEeceEECCCCEECCCCEE
Confidence 88 247888999999999999999998 99999999999999998999999999877643
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=355.94 Aligned_cols=319 Identities=19% Similarity=0.340 Sum_probs=228.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-hhhcc-------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEKKL------- 71 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~------- 71 (331)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.+ |+..+
T Consensus 21 ~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (451)
T 1yp2_A 21 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 100 (451)
T ss_dssp EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred eEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhcccccccccC
Confidence 6899999999999999999999999999999 99999999999999999999999888888888865 21011
Q ss_pred CeEEEEeeCC-----cccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCC
Q 020113 72 EIKITCSQET-----EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSK 141 (331)
Q Consensus 72 ~~~v~~~~~~-----~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~ 141 (331)
.+++....+. .+.|++++++.+++.+.....++|++++||++++.++.++++.|.+.+++++++ . +++..
T Consensus 101 ~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~ 180 (451)
T 1yp2_A 101 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA 180 (451)
T ss_dssp EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred cEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhccc
Confidence 1233222221 247999999999998863222389999999999989999999999888888776 2 25678
Q ss_pred ceEEEEcCCcCceeEeeecCCCC---------------------CCCeEEEEEEEEChhhHh-hccc---CCCCcccchH
Q 020113 142 YGVVVMEETTGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLD-RIEL---KPTSIEKEVF 196 (331)
Q Consensus 142 ~~~v~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~-~l~~---~~~~~~~~~l 196 (331)
|+++.+|++ +++..|.|||... ..+++++|+|+|++++|. .++. ...++..+++
T Consensus 181 ~g~v~~d~~-~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l 259 (451)
T 1yp2_A 181 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 259 (451)
T ss_dssp SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred CCEEEECCC-CCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHH
Confidence 999999977 8999999998632 256899999999999874 4432 2335556789
Q ss_pred HHHHhc-CcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc-----ccCCccCCCceEecc-----eEEcCCcEECCCcE
Q 020113 197 PEIAAE-NKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK-----NSSSKLATGSNIIGN-----VLVHEGAKIGDGCL 265 (331)
Q Consensus 197 ~~l~~~-~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~-----~~~~~i~~~~~i~~~-----~~i~~~~~i~~~~~ 265 (331)
+.++++ .++++++++++|.|++||++|.++++.++.+... .+.+.+++++.|+++ +.| .++.||++|.
T Consensus 260 ~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I-~~~~Ig~~~~ 338 (451)
T 1yp2_A 260 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADV-TDSVIGEGCV 338 (451)
T ss_dssp HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEE-EEEEECTTCE
T ss_pred HHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEE-eCeEECCCCE
Confidence 888887 5799999999999999999999999988765421 122333333333333 333 2455566666
Q ss_pred ECCCCCceEeCCEEcCCCEECCCcEEccceEECCC-------------------cEECcccEEcCcEEccCeEEccCcc
Q 020113 266 IGPDKHACISSSIIGWHSTVGRWARVENMTILGED-------------------VHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 266 I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~-------------------~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
|+ . +.|.+++||++|.||++|.|.+ +++..+ ++||+++.+.+++|++++.|++++.
T Consensus 339 I~--~-~~i~~~~Ig~~~~Ig~~~~I~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~ 413 (451)
T 1yp2_A 339 IK--N-CKIHHSVVGLRSCISEGAIIED-SLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVK 413 (451)
T ss_dssp EE--E-EEEESCEECTTCEECTTCEEES-CEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCE
T ss_pred Ec--c-eEEeccEECCCCEECCCCEEcC-ceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCE
Confidence 65 4 5555666666666666666666 333333 6666666666666665555555543
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=333.39 Aligned_cols=316 Identities=20% Similarity=0.305 Sum_probs=234.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.+||||||+||||+|+| ||+|+||+|||||+|+|+.|.++|++++++++++..+.+++++.++.+.++.++.++.|.
T Consensus 14 ~vvILAaG~GtRm~~~~---pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~ 90 (501)
T 3st8_A 14 AVLVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQD 90 (501)
T ss_dssp EEEEEECSCCGGGCCSS---CGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred eEEEECCcCcccCCCCC---CHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 56999999999999964 999999999999999999999999999999999999999999998777778889999999
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
+++||++|++++++.+.++..+++++++||. + ....+..+++.|++.+++++++ +++|..||.+..|++ +++..
T Consensus 91 ~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~-g~v~~ 169 (501)
T 3st8_A 91 RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMA 169 (501)
T ss_dssp SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccc-eeEEe
Confidence 9999999999999999876555899999998 3 3456899999999999998888 789999999999998 99999
Q ss_pred eeecCCCC----CCCeEEEEEEEEChhhHhhc----ccCCCC---cccchHHHHHhcCc-EEEEEeCceEE--ecCCHHH
Q 020113 157 FVEKPKNF----VGNKINAGIYLLNPSVLDRI----ELKPTS---IEKEVFPEIAAENK-LFAMVLPGFWM--DIGQPKD 222 (331)
Q Consensus 157 ~~ek~~~~----~~~~~~~Giy~~~~~~l~~l----~~~~~~---~~~~~l~~l~~~~~-i~~~~~~~~~~--~i~t~~d 222 (331)
+.||++.+ ..+++++|+|+|+++.|..+ ..++.. +..+++..+...+. +..+..+..|. .+++..+
T Consensus 170 ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~ 249 (501)
T 3st8_A 170 IVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQ 249 (501)
T ss_dssp EECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHH
T ss_pred eccccCCChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHH
Confidence 99997643 46899999999999887655 222222 23456666666665 66666655443 4556666
Q ss_pred HHHHHHHHHhhhc-----------------cccCCccCCCceEecceEEcCCcEECCCcEECCC--------------CC
Q 020113 223 YITGLRLYLDFLQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD--------------KH 271 (331)
Q Consensus 223 ~~~a~~~~l~~~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~--------------~~ 271 (331)
+.++...+..+.. ......+++++.|.++++++.++.++.+|.|+++ ..
T Consensus 250 l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~ 329 (501)
T 3st8_A 250 LAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVR 329 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECS
T ss_pred HHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEe
Confidence 6555444433321 1233457777888877777777777777777744 11
Q ss_pred ceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 272 ACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 272 ~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
+.+..+.+++++.+|++++++.+++|+++|+||+++++++++|++++.|+
T Consensus 330 ~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~ 379 (501)
T 3st8_A 330 THGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVP 379 (501)
T ss_dssp EEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEE
T ss_pred ecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEe
Confidence 11222334455555555555555555555555555555555544444433
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=323.83 Aligned_cols=303 Identities=25% Similarity=0.433 Sum_probs=238.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++.|.++|++++++++++. +++++.+... + +.++.+
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~--~--i~~~~~ 73 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK--E--ISIVTQ 73 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT--T--CEEEEC
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC--c--EEEEeC
Confidence 89999999999999999999999999999999999999999999999999999876 6667665211 2 334445
Q ss_pred Cc-ccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--ccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCce
Q 020113 81 TE-PLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKV 154 (331)
Q Consensus 81 ~~-~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v 154 (331)
+. +.|++++++.+.+ . +++++++||+++. .+++++++ .+++++. ..++..|+++..+++ +++
T Consensus 74 ~~~~~g~~~~l~~~~~---~---~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~v~~~~~-g~v 141 (401)
T 2ggo_A 74 KDDIKGTGAAILSAKF---N---DEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSNPKDYGVLVLDNQ-NNL 141 (401)
T ss_dssp CTTCCBSTTTGGGCCC---S---SEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSCCSSSCEEEECTT-SSE
T ss_pred CCCCCChHHHHHHhcc---C---CCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCCCcceeEEEECCC-CeE
Confidence 55 6788888877654 1 2899999999776 55777766 2445544 566778888888877 899
Q ss_pred eEeeecCCCCCCCeEEEEEEEEChhhHhhcccCC----CCc-ccchHHHHHhc-CcEEEEEeCceEEecCCHHHHHHHHH
Q 020113 155 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP----TSI-EKEVFPEIAAE-NKLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~----~~~-~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
..+.|||..+.+++.++|+|+|++++++.++... ..+ ..++++.+ .. .++..++.+++|.|++||+||.++++
T Consensus 142 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~ 220 (401)
T 2ggo_A 142 SKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNK 220 (401)
T ss_dssp EEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHH
T ss_pred EEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHH
Confidence 9999999877888999999999999988773211 111 13567766 44 47889999889999999999999999
Q ss_pred HHHhhhc-cc------------cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccc
Q 020113 229 LYLDFLQ-KN------------SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENM 294 (331)
Q Consensus 229 ~~l~~~~-~~------------~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~ 294 (331)
.++.+.. .. ....+++++.|++++.|+.++.||++|.|+ ++++|. +++||++|.||++|.|.+
T Consensus 221 ~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~~Ig~~~~ig~~~~i~~- 297 (401)
T 2ggo_A 221 WALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIG--PNSYLRPYTILVEKNKIGASVEVKE- 297 (401)
T ss_dssp HHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEEC--SSCEECTTEEECSSCEEEETCEEES-
T ss_pred HHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEEC--CCCEEcCCcEECCCCEECCCCEEec-
Confidence 9887754 11 223355566666666666677778888887 778886 688999999999999966
Q ss_pred eEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 295 TILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
++|+++++|++++.+.+++|++++.|+++...
T Consensus 298 ~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i 329 (401)
T 2ggo_A 298 SVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLI 329 (401)
T ss_dssp EEECTTCEEEESCEEESCEECTTCEECTTCEE
T ss_pred CEEcCCcEECCCceEcceEECCCcEECCCcEE
Confidence 99999999999999988888888888876653
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=324.64 Aligned_cols=305 Identities=21% Similarity=0.300 Sum_probs=229.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
+|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|++++++++++..+.+.+++.+ ++ .++.+.
T Consensus 13 ~~vIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~-----~i--~~v~~~ 82 (468)
T 1hm9_A 13 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QT--EFVTQS 82 (468)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS-----SS--EEEECS
T ss_pred cEEEEcCCCCccCCC---CCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC-----Cc--EEEeCC
Confidence 689999999999986 78999999999999999999999999999999998877666665543 23 334456
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
.+.|++++++.+++.+... .++|++++||+ +...+++++++.|.+.++++++. ..++..|+++.+|++ +++..
T Consensus 83 ~~~G~~~sl~~a~~~~~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~-g~v~~ 160 (468)
T 1hm9_A 83 EQLGTGHAVMMTEPILEGL-SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLR 160 (468)
T ss_dssp SCCCHHHHHHTTHHHHTTC-CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred ccCChHHHHHHHHHHhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCC-CCEEE
Confidence 6789999999999998632 23899999999 56778999999999888877766 566778999999887 89999
Q ss_pred eeecCC----CCCCCeEEEEEEEEChhhH-hhccc---C---CCCcccchHHHHHhcC-cEEEEEeCceEEe--cCCHHH
Q 020113 157 FVEKPK----NFVGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGFWMD--IGQPKD 222 (331)
Q Consensus 157 ~~ek~~----~~~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~--i~t~~d 222 (331)
+.|||. .....+.++|+|+|+++.+ +.+.. . ...+..++++.+++.+ +++++.++++|.+ ++||+|
T Consensus 161 ~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~d 240 (468)
T 1hm9_A 161 IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA 240 (468)
T ss_dssp EECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHH
T ss_pred EEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHH
Confidence 999864 2236799999999999854 44422 1 1123367888888876 7999999999977 559999
Q ss_pred HHHHHHHHHhhhc-----------------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEE
Q 020113 223 YITGLRLYLDFLQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTV 285 (331)
Q Consensus 223 ~~~a~~~~l~~~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~i 285 (331)
|..++..+..+.. ..+.+.+++++.|.+++.|++++.||++|.|+ +++.|.++.||++|.|
T Consensus 241 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~~~ig~~~~i 318 (468)
T 1hm9_A 241 LATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLT--NGTYVVDSTIGAGAVI 318 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSSCEEESSCEECTTCEEC--TTCEEESCEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCCcEECCCCEECCCCEEC--CCCEEeccEEeCCcEE
Confidence 9999877654421 11234567777777777777788888888888 6677766666666666
Q ss_pred CCCcEEccceEECCCcEECcccEEc-CcEEccCeEEcc
Q 020113 286 GRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKS 322 (331)
Q Consensus 286 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~ 322 (331)
+ ++.|.+ ++||++|.||+++.|. +++|+++++|++
T Consensus 319 ~-~~~i~~-~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~ 354 (468)
T 1hm9_A 319 T-NSMIEE-SSVADGVTVGPYAHIRPNSSLGAQVHIGN 354 (468)
T ss_dssp C-SCEEES-CEECTTCEECSSCEECSSCEECTTCEEEE
T ss_pred E-EEEEec-cccCCCcEECCceEEecCcEECCccEECC
Confidence 6 555555 5555555555555554 455554444443
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=313.92 Aligned_cols=306 Identities=24% Similarity=0.334 Sum_probs=232.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++++++++++++++.+.+++++.+. .+.++.+
T Consensus 9 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~------~~~~v~~ 79 (459)
T 4fce_A 9 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP------SLNWVLQ 79 (459)
T ss_dssp EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----------CEEEC
T ss_pred ceEEEECCCCCccCCC---CCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC------CcEEEeC
Confidence 4799999999999998 789999999999999999999999999999999998877787777652 3444556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+... ++|++++||. +...+++++++.+.+ .++++. ..++..|+++..+ + +++.
T Consensus 80 ~~~~g~~~~i~~~~~~~~~~--~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~ 153 (459)
T 4fce_A 80 AEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDNPSGYGRIVRE-N-GDVV 153 (459)
T ss_dssp SSCCCHHHHHHHHGGGSCTT--SEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSCCTTSCEEEEE-T-TEEE
T ss_pred CCCCCcHHHHHHHHHhcCCC--CcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCCCCcccEEEeC-C-CcEE
Confidence 77889999999999999632 2999999999 566779999998875 334444 6777889998887 4 8999
Q ss_pred EeeecCC----CCCCCeEEEEEEEEChhhHh-hccc------CCCCcccchHHHHHhcC-cEEEEEeCceE--EecCCHH
Q 020113 156 KFVEKPK----NFVGNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAAEN-KLFAMVLPGFW--MDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~~~l~~l~~~~-~i~~~~~~~~~--~~i~t~~ 221 (331)
.+.|||. .....+.++|+|+|+++.+. .++. ....+..++++.+.+.+ ++.++..+++| .+++||+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~ 233 (459)
T 4fce_A 154 GIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRL 233 (459)
T ss_dssp EEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHH
T ss_pred EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHH
Confidence 9999864 23467999999999998764 3321 11222356778887775 69899988755 6799999
Q ss_pred HHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 222 DYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 222 d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
||..++..+..+... .+.+.+++++.|+++++|++++.||++|.|+ .+++|.+++||++|.
T Consensus 234 Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~~~Ig~~~~ 311 (459)
T 4fce_A 234 QLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIG--TGCVLKNCVIGDDSE 311 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEEC--TTCEEESCEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccceEECCCCEEC--CCCEEeccEECCCCE
Confidence 999998766554311 1234577778888888887778888888888 667777777777777
Q ss_pred ECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
|+++|.|.+ ++||++|.||+++.|. ++.++++++|++++
T Consensus 312 I~~~~~i~~-~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~ 351 (459)
T 4fce_A 312 ISPYTVLED-ARLDANCTVGPFARLRPGAELAEGAHVGNFV 351 (459)
T ss_dssp ECSSCEEES-CEECTTCEECSSEEECTTCEECTTCEEEEEE
T ss_pred ECCCcEEeC-CEECCCCEECCccEECCCcEECCCcEECCCe
Confidence 777777765 7777777777777774 56666665555543
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=307.10 Aligned_cols=304 Identities=22% Similarity=0.343 Sum_probs=229.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|++++++++++..+.+++++.+. + +.++.+
T Consensus 6 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~--~~~v~~ 76 (456)
T 2v0h_A 6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE----Q--VNWVLQ 76 (456)
T ss_dssp EEEEEECCCCCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC----C--CEEEEC
T ss_pred ceEEEECCCCCcccCC---CCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC----C--cEEEeC
Confidence 3689999999999986 689999999999999999999999999999999998777777766542 3 334455
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+... +++++++||. +...+++++++.|.+ ++++++ ..++..|+.+..+ + +++.
T Consensus 77 ~~~~g~~~~~~~~~~~~~~~--~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~ 150 (456)
T 2v0h_A 77 TEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIRE-N-GNVV 150 (456)
T ss_dssp SCCCCHHHHHHHHGGGCCTT--SEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEEE-T-TEEE
T ss_pred CCCCCcHHHHHHHHHhcCCC--CeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEEc-C-CcEE
Confidence 66789999999999988532 2899999999 556779999998876 455555 5667778888887 5 8999
Q ss_pred EeeecCCC----CCCCeEEEEEEEEChhhH-hhccc---C---CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 020113 156 KFVEKPKN----FVGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 221 (331)
.+.|||.. ....+.++|+|+|+++.+ +.++. . ......++++.+...+ ++..++.+++ |.+++||+
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpe 230 (456)
T 2v0h_A 151 AIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRL 230 (456)
T ss_dssp EEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHH
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHH
Confidence 99998652 235799999999999855 44321 1 1122357788887776 6888988654 56999999
Q ss_pred HHHHHHHHHHhhhc-----c------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 222 DYITGLRLYLDFLQ-----K------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 222 d~~~a~~~~l~~~~-----~------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
||.++++.+..+.. . .....+++++.|+++++|++++.||++|.|+ .++.|++++||++|.
T Consensus 231 Dl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~ig~~~~ 308 (456)
T 2v0h_A 231 QLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIG--TGCVLKNVVIGNDVE 308 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEEEEEEECTTCEEC--TTCEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEcCCcEECCCCEEC--CCCEEEeEEEeCCCE
Confidence 99999886654421 0 1134567778888888887788888888888 778887777888888
Q ss_pred ECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEcc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKS 322 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~ 322 (331)
|+++|.|.+ ++||++|.|++++.|. ++.|++++.|++
T Consensus 309 I~~~~~i~~-~~ig~~~~I~~~~~i~~~~~ig~~~~ig~ 346 (456)
T 2v0h_A 309 IKPYSVLED-SIVGEKAAIGPFSRLRPGAELAAETHVGN 346 (456)
T ss_dssp ECSSCEEEE-EEECTTCEECSSEEECTTCEECTTCEEEE
T ss_pred EcCCeEEcc-CcCCCCcEECCccEECCCCEECCCCEECC
Confidence 877777766 7777777777777664 455555544444
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=272.20 Aligned_cols=229 Identities=22% Similarity=0.354 Sum_probs=194.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh---h--------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE---K-------- 69 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~---~-------- 69 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|+++++.+.+++++.+.. +
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~ 82 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKE 82 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CCHH
T ss_pred eEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccch
Confidence 68999999999999999999999999999999999999999999999999999988888888876410 0
Q ss_pred ---------ccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecccc-----HHHHHHHHhhcCCceEEE
Q 020113 70 ---------KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-----LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 70 ---------~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~-----l~~~l~~~~~~~~~~~i~ 135 (331)
.++.++.++.+..+.|++++++.+++.+.++ +|+|++||.+++.+ +.++++.|.+.++ .++.
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~---~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~ 158 (281)
T 3juk_A 83 NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNE---PFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVA 158 (281)
T ss_dssp HHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHCSS---CEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEE
T ss_pred hhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcCCC---CEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEE
Confidence 0346777888888899999999999999643 89999999988887 9999999988777 4444
Q ss_pred ---e--cCCCCceEEEEcC--CcC--ceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCCC--Cc---ccchHHHH
Q 020113 136 ---V--DEPSKYGVVVMEE--TTG--KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT--SI---EKEVFPEI 199 (331)
Q Consensus 136 ---~--~~~~~~~~v~~d~--~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~--~~---~~~~l~~l 199 (331)
+ +++..||++..++ + + ++..+.|||. .+.++++++|+|+|++++|+.+..... .. ..++++.+
T Consensus 159 ~~~~~~~~~~~~g~v~~~~~~~-g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~l~d~i~~l 237 (281)
T 3juk_A 159 IEEVALEEVSKYGVIRGEWLEE-GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQ 237 (281)
T ss_dssp EEECCTTTGGGSEEEEEEEEET-TEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCCHHHHHHHH
T ss_pred EEEechhhcccCCEEEeccCCC-CceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCCCCCceeHHHHHHHH
Confidence 3 5577899999986 5 7 9999999987 456789999999999999987743211 11 25678888
Q ss_pred HhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhh
Q 020113 200 AAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 234 (331)
Q Consensus 200 ~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~ 234 (331)
+.++++.+|+++++|.|++||+||.+|++.++..-
T Consensus 238 ~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~~ 272 (281)
T 3juk_A 238 AKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKR 272 (281)
T ss_dssp HHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhch
Confidence 88889999999999999999999999999888653
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=262.65 Aligned_cols=226 Identities=25% Similarity=0.391 Sum_probs=195.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccC-hHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++. .+.+.+++.+ ...++.++.+..
T Consensus 25 m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 103 (269)
T 4ecm_A 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS-GQEFGVSFTYRV 103 (269)
T ss_dssp EEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred cEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh-ccccCceEEEee
Confidence 68999999999999999999999999999999999999999999999999999875 3677777764 345677888887
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
+..+.|++++++.+++.+..+ +|++++||+++..++.++++.|.+.+++++++ +.++..|+++..++ +++..
T Consensus 104 ~~~~~G~~~al~~a~~~~~~~---~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~--g~v~~ 178 (269)
T 4ecm_A 104 QDKAGGIAQALGLCEDFVGND---RMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQN--RKIIE 178 (269)
T ss_dssp CSSCCCHHHHHHTTHHHHTTS---EEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEET--TEEEE
T ss_pred CCccCcHHHHHHHHHHhcCCC---cEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEcC--CEEEE
Confidence 788889999999999988632 99999999998889999999999888888777 56778899999884 79999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCc-ccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSI-EKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~-~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
+.|||..+.+.++++|+|+|++++++.+... ...+ ..++++.+.+.+++.++..+++|.|++||+||.++++.++
T Consensus 179 ~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~ 258 (269)
T 4ecm_A 179 IEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALAR 258 (269)
T ss_dssp EEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTT
T ss_pred EEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 9999987788999999999999998777432 1112 2567888888889999999999999999999999998765
Q ss_pred h
Q 020113 232 D 232 (331)
Q Consensus 232 ~ 232 (331)
+
T Consensus 259 ~ 259 (269)
T 4ecm_A 259 D 259 (269)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=254.61 Aligned_cols=228 Identities=30% Similarity=0.558 Sum_probs=184.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhc-cCeE-----
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIK----- 74 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~-~~~~----- 74 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|+++++.+.+++++.+.... .++.
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE 82 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred cEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999999998888888888763210 0122
Q ss_pred --------------EEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-ecCC
Q 020113 75 --------------ITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEP 139 (331)
Q Consensus 75 --------------v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~~~~ 139 (331)
+.+..+..+.|++++++.+++.+... ++|++++||.+++.++.++++.|.+.++.+++. +.++
T Consensus 83 ~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~~--~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 160 (259)
T 1tzf_A 83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPP 160 (259)
T ss_dssp TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTS--SCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEECCC
T ss_pred cceeeeeccccccceeeeecccccCcHHHHHHHHHhcCCC--CcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEecCC
Confidence 22223345789999999999988422 289999999999889999999998878777777 6677
Q ss_pred CCceEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCC
Q 020113 140 SKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQ 219 (331)
Q Consensus 140 ~~~~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t 219 (331)
..|+++.+| + +++..+.|||... ..++++|+|+|++++++.+.....+++.++++.+++++++.+++++++|.|++|
T Consensus 161 ~~~g~v~~~-~-g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t 237 (259)
T 1tzf_A 161 GRFGALDIQ-A-GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT 237 (259)
T ss_dssp CCSEEEEEE-T-TEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCS
T ss_pred CCccEEEEc-C-CEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhcccccccHHHHHHHHHHcCCEEEEEeCcEEEeCCC
Confidence 889999888 5 8999999998643 568999999999999988755444566788888888889999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 020113 220 PKDYITGLRLYLDF 233 (331)
Q Consensus 220 ~~d~~~a~~~~l~~ 233 (331)
|+||.++++.+...
T Consensus 238 ~~d~~~a~~~~~~~ 251 (259)
T 1tzf_A 238 LRDKVYLEGLWEKG 251 (259)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887643
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=253.85 Aligned_cols=228 Identities=26% Similarity=0.344 Sum_probs=187.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh---h--------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE---K-------- 69 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~---~-------- 69 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+++++.... +
T Consensus 9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~ 88 (302)
T 2e3d_A 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_dssp CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----C
T ss_pred cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccch
Confidence 68999999999999999999999999999999999999999999999999999988788888876411 0
Q ss_pred ----------ccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc-----c---cHHHHHHHHhhcCCc
Q 020113 70 ----------KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE-----Y---PLKQMIEFHRGRGGE 131 (331)
Q Consensus 70 ----------~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~-----~---~l~~~l~~~~~~~~~ 131 (331)
.++.++.++.+..+.|++++++.+++.+.++ +|+|++||.+++ . ++.++++.|.+.++
T Consensus 89 ~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~~~---~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~- 164 (302)
T 2e3d_A 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE---PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH- 164 (302)
T ss_dssp HHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHCSS---CEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-
T ss_pred hhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcCCC---cEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-
Confidence 1356777777778899999999999998632 899999999876 2 79999999987776
Q ss_pred eEEE---ecCCCCceEEEEc----CCcC---ceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCC-----CCcccc
Q 020113 132 ASIM---VDEPSKYGVVVME----ETTG---KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKE 194 (331)
Q Consensus 132 ~~i~---~~~~~~~~~v~~d----~~~~---~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~~ 194 (331)
+++. ..++..|+++..+ ++ + ++..+.|||. .+.+.++++|+|+|++++++.+.... .....+
T Consensus 165 ~~i~~~~~~~~~~yg~v~~~~~~~~~-g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d 243 (302)
T 2e3d_A 165 SQIMVEPVADVTAYGVVDCKGVELAP-GESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTD 243 (302)
T ss_dssp EEEEEEECSCGGGSEEEECTTCCCCT-TCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----CCCHHH
T ss_pred cEEEEEEccCCCCccEEEecccccCC-CCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhCCCCCCceehHH
Confidence 5544 5566789998874 34 6 8999999985 34567999999999999988774321 111246
Q ss_pred hHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 020113 195 VFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 195 ~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
+++.+++.+++.+++++++|.|++||++|.++++.++.+
T Consensus 244 ~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~ 282 (302)
T 2e3d_A 244 AIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIR 282 (302)
T ss_dssp HHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 777888778999999999999999999999999766543
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=251.06 Aligned_cols=226 Identities=24% Similarity=0.407 Sum_probs=188.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEec-cChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.|..+|+++|+|+++ ++.+.+++++.+ ++++++++.+..
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~ 82 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAE 82 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc-ccccCceEEEec
Confidence 899999999999999999999999999999999999999999999999999886 556778888765 334677777777
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
++.+.|+++++..+++.+.++ +++++.||.+ .+.++.++++.|.+.+.+++++ +.++..|+++.+|++ +++.
T Consensus 83 ~~~~~G~~~al~~a~~~i~~~---~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~-g~v~ 158 (296)
T 1mc3_A 83 QPSPDGLAQAFIIGETFLNGE---PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAI 158 (296)
T ss_dssp CSSCCCSTHHHHHTHHHHTTS---CEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCC---CEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCC-CcEE
Confidence 778899999999999998643 7888889985 4668999999997666666665 677889999999987 8999
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCc-ccchHHHHHhcCcEEEEEeC-ce-EEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSI-EKEVFPEIAAENKLFAMVLP-GF-WMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~-~~~~l~~l~~~~~i~~~~~~-~~-~~~i~t~~d~~~a~~ 228 (331)
++.|||..+.++++++|+|+|++++++.+..- ...+ ..++++.+++.+++.++.+. ++ |.|++||+||.+++.
T Consensus 159 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~ 238 (296)
T 1mc3_A 159 SLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST 238 (296)
T ss_dssp ECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHH
T ss_pred EEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHH
Confidence 99999987778899999999999998776321 1112 14567778888888888775 64 999999999999987
Q ss_pred HHH
Q 020113 229 LYL 231 (331)
Q Consensus 229 ~~l 231 (331)
.+.
T Consensus 239 ~~~ 241 (296)
T 1mc3_A 239 FVQ 241 (296)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=248.02 Aligned_cols=226 Identities=23% Similarity=0.404 Sum_probs=188.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEec-cChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|+++ ++.+.+++++.+ ++++++++.+..
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~-g~~~g~~i~~~~ 82 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRV 82 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEE
T ss_pred eEEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh-ccccCceEEEee
Confidence 899999999999999999999999999999999999999999999999999886 556778888765 344677777777
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
++.+.|+++++..+++.+.++ +++++.||.+ .+.++.++++.|.+....++++ +.++.+|+++.+|++ +++.
T Consensus 83 ~~~~~G~~~al~~a~~~i~~~---~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~ 158 (295)
T 1lvw_A 83 QEEPRGIADAFIVGKDFIGDS---KVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVI 158 (295)
T ss_dssp CSSCCCGGGHHHHTHHHHTTS---CEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEE
T ss_pred CCCCCChHHHHHHHHHHhCCC---cEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCC-CcEE
Confidence 778889999999999998643 7888889995 4678999999997766666655 677888999999987 9999
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhccc-C---CCCc-ccchHHHHHhcCcEEEEEeC-c-eEEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIEL-K---PTSI-EKEVFPEIAAENKLFAMVLP-G-FWMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~-~---~~~~-~~~~l~~l~~~~~i~~~~~~-~-~~~~i~t~~d~~~a~~ 228 (331)
++.|||..+.++++++|+|+|++++++.+.. . ...+ ..++++.+++.+++.++.+. + .|.|++||+||.+++.
T Consensus 159 ~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~ 238 (295)
T 1lvw_A 159 SIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238 (295)
T ss_dssp EEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHH
T ss_pred EEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHH
Confidence 9999998777889999999999999877632 1 1112 14667777888888777775 6 4999999999999987
Q ss_pred HHH
Q 020113 229 LYL 231 (331)
Q Consensus 229 ~~l 231 (331)
.+.
T Consensus 239 ~~~ 241 (295)
T 1lvw_A 239 FIE 241 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=247.60 Aligned_cols=226 Identities=24% Similarity=0.396 Sum_probs=188.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEec-cChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.|..+|+++|+|+++ ++.+.+++++.+ +++++.++.+..
T Consensus 3 ~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~ 81 (293)
T 1fxo_A 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAV 81 (293)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred ceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc-ccccCceEEEee
Confidence 479999999999999999999999999999999999999999999999998884 456778888775 334677787777
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
++.+.|+++++..+++.+.++ +++++.||.+ .+.++.++++.|.+.+.+++++ +.++..|+++.+|++ +++.
T Consensus 82 ~~~~~G~~~al~~a~~~i~~~---~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~ 157 (293)
T 1fxo_A 82 QPSPDGLAQAFLIGESFIGND---LSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAI 157 (293)
T ss_dssp CSSCCCGGGHHHHTHHHHTTS---EEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEE
T ss_pred CCCCCCHHHHHHHHHHHhCCC---CEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCC-CcEE
Confidence 788899999999999988642 8999999995 4568999999997766666655 677888999999987 9999
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhccc-C---CCCcc-cchHHHHHhcCcEEEEEeC-c-eEEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIEL-K---PTSIE-KEVFPEIAAENKLFAMVLP-G-FWMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~-~---~~~~~-~~~l~~l~~~~~i~~~~~~-~-~~~~i~t~~d~~~a~~ 228 (331)
++.|||..+.++++++|+|+|++++++.+.. . ...++ .++++.+++.+++.++... + .|.|++||+||.+++.
T Consensus 158 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~ 237 (293)
T 1fxo_A 158 SLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 237 (293)
T ss_dssp EEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHH
T ss_pred EEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHH
Confidence 9999998777889999999999999877632 1 11122 4677888888888888775 6 4999999999999987
Q ss_pred HHH
Q 020113 229 LYL 231 (331)
Q Consensus 229 ~~l 231 (331)
.+.
T Consensus 238 ~~~ 240 (293)
T 1fxo_A 238 FIA 240 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=251.00 Aligned_cols=228 Identities=24% Similarity=0.362 Sum_probs=170.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh------h-----
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------K----- 69 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~------~----- 69 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+++++.+.. .
T Consensus 15 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~ 94 (297)
T 2ux8_A 15 RKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKS 94 (297)
T ss_dssp CEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCC
T ss_pred cEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhccch
Confidence 68999999999999999999999999999999999999999999999999999988788888875310 0
Q ss_pred --------ccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc---ccHHHHHHHHhhcCCceEEE---
Q 020113 70 --------KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE---YPLKQMIEFHRGRGGEASIM--- 135 (331)
Q Consensus 70 --------~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~---~~l~~~l~~~~~~~~~~~i~--- 135 (331)
..+.++.++.+..+.|++++++.+++.+.++ +|+|++||++++ .++.++++.|.+.++ .++.
T Consensus 95 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~~~---~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~ 170 (297)
T 2ux8_A 95 LDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDE---PFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEE 170 (297)
T ss_dssp GGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHCSS---CEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-
T ss_pred hhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcCCC---cEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEe
Confidence 0234566666777889999999999988532 899999999876 569999999987765 4443
Q ss_pred e--cCCCCceEEEEcC--CcC--ceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCCC----Cc-ccchHHHHHhc
Q 020113 136 V--DEPSKYGVVVMEE--TTG--KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT----SI-EKEVFPEIAAE 202 (331)
Q Consensus 136 ~--~~~~~~~~v~~d~--~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~----~~-~~~~l~~l~~~ 202 (331)
+ .++..|+++..++ + + ++..|.|||. ...+.++++|+|+|++++++.+..... .+ ..++++.+++.
T Consensus 171 ~~~~~~~~yg~v~~~~~~~-~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~ 249 (297)
T 2ux8_A 171 VPDDQTHRYGIITPGTQDG-VLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGD 249 (297)
T ss_dssp ----------CCCCCCBCS-SEEEC--------------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGGGTTT
T ss_pred cCcccCCCCCeEEecccCC-CceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHHHHhc
Confidence 2 4567898887663 3 5 8899999984 345678999999999998887732111 11 24677778877
Q ss_pred CcEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 020113 203 NKLFAMVLPGFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 203 ~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
+++.+++++++|.|+|||+||.++++.++..
T Consensus 250 ~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~ 280 (297)
T 2ux8_A 250 QPFHGVTFQGTRYDCGDKAGFIQANLAVALS 280 (297)
T ss_dssp SCEEEEECSSEEEETTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEecceEEeCCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999999877644
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=245.87 Aligned_cols=223 Identities=16% Similarity=0.210 Sum_probs=183.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCcee--CCcchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDF--ANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi--~g~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~ 77 (331)
|+|||||||.|+||+| ||+|+|+ +|+|||+|+++.+.++|+++|++++++.. +.+.+++.+. ..++.++.+
T Consensus 6 ~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~~~~~i~~ 79 (303)
T 3pnn_A 6 PTLFVLAAGMGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTK-YEGRIPVEL 79 (303)
T ss_dssp CEEEEECTTCBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHH-HTTTSCEEE
T ss_pred eEEEEECCCCcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHH-hccCCcEEE
Confidence 5799999999999998 7999999 59999999999999999999999999884 7889888762 234556666
Q ss_pred eeCC---------------cccCChHHHHHHHhhccCCCCCcEEEEeCCeecccc-HHHHHHHHhh---cCCceEEE---
Q 020113 78 SQET---------------EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRG---RGGEASIM--- 135 (331)
Q Consensus 78 ~~~~---------------~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~---~~~~~~i~--- 135 (331)
+.+. .+.|++++++.+++.+. + +|+|++||.+++.+ ++++++.|.+ .+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~-~---~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 155 (303)
T 3pnn_A 80 VFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR-E---PFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYR 155 (303)
T ss_dssp EECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC-S---CEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred EecccccccccccccccccccCCcHHHHHHHHHhcC-C---CEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEE
Confidence 6655 57899999999999983 2 89999999988776 9999999976 45667766
Q ss_pred ecCC-CCc-----eEEEEcCCcCceeEeeecCCC-------------------CCCCeEEEEEEEEChhhHhhccc----
Q 020113 136 VDEP-SKY-----GVVVMEETTGKVEKFVEKPKN-------------------FVGNKINAGIYLLNPSVLDRIEL---- 186 (331)
Q Consensus 136 ~~~~-~~~-----~~v~~d~~~~~v~~~~ek~~~-------------------~~~~~~~~Giy~~~~~~l~~l~~---- 186 (331)
+.++ +.| |++.+|++ ++|..+.|||.. +.++++++|+|+|++++|+.+..
T Consensus 156 ~~~~~~~~g~~~~G~v~~d~~-g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~ 234 (303)
T 3pnn_A 156 VGNTLSESGGVSRGVCQVDEK-HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFIN 234 (303)
T ss_dssp GGGSCBTTBCEEEEEEEECTT-SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHH
T ss_pred CCCccCccCceeeeeEeeCCC-CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHHHHHHHH
Confidence 5556 666 68888877 899999999853 35789999999999999887632
Q ss_pred ------CCC---CcccchHHHHHhcC--cEEEEEeCceEEecCCHHHHHHHHHHHHhhh
Q 020113 187 ------KPT---SIEKEVFPEIAAEN--KLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 234 (331)
Q Consensus 187 ------~~~---~~~~~~l~~l~~~~--~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~ 234 (331)
... ....++++.+++++ ++.+++++++|.|++||+||.++++.+....
T Consensus 235 ~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~ 293 (303)
T 3pnn_A 235 FLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELT 293 (303)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHH
T ss_pred HHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHH
Confidence 111 12246788888888 6999999999999999999999998876544
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=246.41 Aligned_cols=230 Identities=23% Similarity=0.348 Sum_probs=184.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh------------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~------------ 68 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++....
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 92 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKT 92 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCH
T ss_pred eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhccchh
Confidence 78999999999999999999999999999999999999999999999999999988778887764310
Q ss_pred -------h-ccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--ccHHHHHHHHhhcCCceEEE---
Q 020113 69 -------K-KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGRGGEASIM--- 135 (331)
Q Consensus 69 -------~-~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--~~l~~~l~~~~~~~~~~~i~--- 135 (331)
. .++.++.++.++.+.|++++++.++..+..+. +.|+|++||.+++ .++.++++.|.+.++ .++.
T Consensus 93 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~-d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~ 170 (323)
T 2pa4_A 93 DQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDE-DVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVE 170 (323)
T ss_dssp HHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSC-CEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEE
T ss_pred hhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCC-CeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEE
Confidence 0 02456766667778899999999999886421 1399999999876 569999999987765 3443
Q ss_pred e--cCCCCceEEEEc----CCcC--ceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCCC----Cc-ccchHHHHH
Q 020113 136 V--DEPSKYGVVVME----ETTG--KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT----SI-EKEVFPEIA 200 (331)
Q Consensus 136 ~--~~~~~~~~v~~d----~~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~----~~-~~~~l~~l~ 200 (331)
+ +++..|+++.++ ++ + ++..|.|||. ...+.+.++|+|+|++++++.+..... .+ ..++++.++
T Consensus 171 ~~~~~~~~yg~v~~d~~~~~~-~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~ 249 (323)
T 2pa4_A 171 VSEADVSKYGIFEIEADTKDS-DVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLI 249 (323)
T ss_dssp CCGGGGGGSEEEEEEECCSST-TEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHH
T ss_pred ecccccCCccEEEeCCcccCC-CceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHH
Confidence 2 356789999877 43 4 8999999984 445679999999999999887733111 11 146788888
Q ss_pred hc-CcEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 020113 201 AE-NKLFAMVLPGFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 201 ~~-~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
++ .++.+++++++|.|+|||+||.++++.++..
T Consensus 250 ~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~ 283 (323)
T 2pa4_A 250 DEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLS 283 (323)
T ss_dssp HTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHT
T ss_pred HcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhc
Confidence 77 5799999999999999999999999777643
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=238.22 Aligned_cols=216 Identities=17% Similarity=0.266 Sum_probs=166.6
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHH-cCCCEEEEEeccChHHHHHHHHHhhhccCe--EEEEee
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEI--KITCSQ 79 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~--~v~~~~ 79 (331)
+||||||.|+||+|+|..+||+|+|++|||||+|+++.+.+ +|++++++++++..+ +.+++.+..++++. ...+..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIAEL 80 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEEEE
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEEEe
Confidence 79999999999999999999999999999999999999999 799999999988765 55555543222221 123455
Q ss_pred CCcccCChHHHHHHHhhcc----CCCCCcEEEEeCCeec-cccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCc
Q 020113 80 ETEPLGTAGPLALARDKLI----DDSGEPFFVLNSDVIS-EYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETT 151 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~----~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~ 151 (331)
+..+.|++++++.+++.+. +.+ ++|+|++||.++ +.++.++ ..+++++++ +.++ +||++..|++
T Consensus 81 ~~~~~Gt~~av~~a~~~l~~~~~~~~-~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~p-~yG~v~~d~~- 152 (255)
T 4evw_A 81 HTETRGQAETVTLGLEELAKQGVDYQ-GSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGGD-NWSFAKPEHA- 152 (255)
T ss_dssp SSCCSSHHHHHHHHHHHHHHTTCCCC-SCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCSS-CSCEEEESST-
T ss_pred CCCCCCHHHHHHHHHHHHhhcccCCC-CcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCCC-ceeEEEECCC-
Confidence 6788999999999999983 112 289999999987 4555443 234556666 4554 9999999987
Q ss_pred C--ceeEeeecCCCCCCCeEEEEEEEEChh-hH-----hhcccC------CCCcccchHHHHHhcC-cEEEEEeC-ceEE
Q 020113 152 G--KVEKFVEKPKNFVGNKINAGIYLLNPS-VL-----DRIELK------PTSIEKEVFPEIAAEN-KLFAMVLP-GFWM 215 (331)
Q Consensus 152 ~--~v~~~~ek~~~~~~~~~~~Giy~~~~~-~l-----~~l~~~------~~~~~~~~l~~l~~~~-~i~~~~~~-~~~~ 215 (331)
+ +|..+.||+ +.++++++|+|+|++. .+ +.+... ...+..++++.+++++ ++.++.++ ++|.
T Consensus 153 g~~~V~~i~EK~--~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~ 230 (255)
T 4evw_A 153 GSTKVIQTAEKN--PISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVI 230 (255)
T ss_dssp TCCBEEEEESSS--CSSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCE
T ss_pred CCeEEEEEEecc--CccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEE
Confidence 7 999999993 4578999999999985 22 222222 1223357889998887 48889885 8999
Q ss_pred ecCCHHHHHHHHHH
Q 020113 216 DIGQPKDYITGLRL 229 (331)
Q Consensus 216 ~i~t~~d~~~a~~~ 229 (331)
|++||++|.++...
T Consensus 231 digt~~~l~~~~~~ 244 (255)
T 4evw_A 231 FCGVPDEYTDFLRQ 244 (255)
T ss_dssp ECCSHHHHHHHHHC
T ss_pred ECCCHHHHHHHHhc
Confidence 99999999998653
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=230.54 Aligned_cols=222 Identities=20% Similarity=0.296 Sum_probs=148.7
Q ss_pred CeEEEEeCCCCcccCCCCC-CCCCCCcee-CCcchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCe-EEE
Q 020113 1 MKALILVGGFGTRLRPLTL-SVPKPLVDF-ANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEI-KIT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~-~~pK~llpi-~g~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~-~v~ 76 (331)
|+|||||||.|+||+|+|. ..||+|+|+ +|+|||+|+++.+.++ +++|+|++++.. +.+.+++.+. ++. ++.
T Consensus 5 ~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~---~~~~~~~ 80 (308)
T 2qh5_A 5 IKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE---IKNKSVG 80 (308)
T ss_dssp EEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT---CSSCEEE
T ss_pred cEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh---hCCCccE
Confidence 5799999999999999996 799999999 5999999999999999 999999998764 5667776651 344 555
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeec-ccc-HHHHHHH---HhhcCCceEEE---ecCCCCceEEEEc
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEF---HRGRGGEASIM---VDEPSKYGVVVME 148 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~-~~~-l~~~l~~---~~~~~~~~~i~---~~~~~~~~~v~~d 148 (331)
++.++.+.|++.++..++..+..+ ++|++++||.++ +.+ +.++++. |.+.++.+++. ..++..|+++..+
T Consensus 81 ~i~~~~~~gt~~al~~a~~~l~~~--~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d 158 (308)
T 2qh5_A 81 FLLESLSKNTANAIALSALMSDKE--DLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESP 158 (308)
T ss_dssp EEEESSCCCHHHHHHHHHHTSCTT--SEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECS
T ss_pred EEeCCCCCChHHHHHHHHHHhCCC--CeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEC
Confidence 666677889999999999988422 159999999987 555 8999987 66667777766 4456789999887
Q ss_pred CCcCceeEeeecCCCCC--------CCeEEEEEEEEChhhH-hhccc---------------CC------CCc---ccch
Q 020113 149 ETTGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVL-DRIEL---------------KP------TSI---EKEV 195 (331)
Q Consensus 149 ~~~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l-~~l~~---------------~~------~~~---~~~~ 195 (331)
++ ++|..|.|||.... +.++++|+|+|+++.| +.+.. .. ..+ +.++
T Consensus 159 ~~-~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 237 (308)
T 2qh5_A 159 NG-LDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKS 237 (308)
T ss_dssp SS-SBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHH
T ss_pred CC-CEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHH
Confidence 66 89999999986421 4689999999999875 32210 00 111 1233
Q ss_pred HH--------H-HHhc-CcEEEEEeCceEEecCCHHHHHHHHHH
Q 020113 196 FP--------E-IAAE-NKLFAMVLPGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 196 l~--------~-l~~~-~~i~~~~~~~~~~~i~t~~d~~~a~~~ 229 (331)
++ . ++++ .++.+++++++|.|++||++|.+++..
T Consensus 238 ~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~ 281 (308)
T 2qh5_A 238 MQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAAN 281 (308)
T ss_dssp HHTSCCCCHHHHTTTTCSCEEEEECCSCCBC-------------
T ss_pred HhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhc
Confidence 33 2 4554 579999999999999999999999764
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=208.31 Aligned_cols=218 Identities=19% Similarity=0.224 Sum_probs=168.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.|||||+|.|+|| | ||+|+|++|+|||+|+++.+.++|+++|+|+++ .+.+++++.+ ++.++.+..+.
T Consensus 4 ~aiIlA~G~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~----~g~~v~~~~~~ 71 (252)
T 3oam_A 4 TVVIPARYQSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA----FGGVVCMTSPN 71 (252)
T ss_dssp EEEEECCCCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCTT
T ss_pred EEEEecCcCCCCC-C-----CcceeeECCEEHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH----cCCEEEEcCCC
Confidence 5899999999999 4 699999999999999999999999999999985 4667777765 46777776667
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCc-----eEEEEcCCc
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKY-----GVVVMEETT 151 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~-----~~v~~d~~~ 151 (331)
.+.|++. +..++..+.....+.|++++||. +...++.++++.|.+.+++++++ +.++..| +.+.+|++
T Consensus 72 ~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~- 149 (252)
T 3oam_A 72 HQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKS- 149 (252)
T ss_dssp CCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTT-
T ss_pred CCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCC-
Confidence 7788877 66666766311223899999998 44677999999998877777666 5666666 88999988
Q ss_pred CceeEeeecCCC-------------CCCCeEEEEEEEEChhhHhhcc-cCCCCccc----chHHHHHhcCcEEEEEeC-c
Q 020113 152 GKVEKFVEKPKN-------------FVGNKINAGIYLLNPSVLDRIE-LKPTSIEK----EVFPEIAAENKLFAMVLP-G 212 (331)
Q Consensus 152 ~~v~~~~ek~~~-------------~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~----~~l~~l~~~~~i~~~~~~-~ 212 (331)
|++..|.++|-. +...+.++|+|+|++++|+.+. .....+++ +.++.+....++.++..+ .
T Consensus 150 g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~ 229 (252)
T 3oam_A 150 GYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEA 229 (252)
T ss_dssp SBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred CeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHHCCCeEEEEEecCC
Confidence 999999887521 2367999999999999998873 22333332 234443334478888764 4
Q ss_pred eEEecCCHHHHHHHHHHHHhh
Q 020113 213 FWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~~l~~ 233 (331)
+|.+||||+||.++++.+..+
T Consensus 230 ~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 230 PPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHhh
Confidence 689999999999998877554
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=210.22 Aligned_cols=213 Identities=22% Similarity=0.332 Sum_probs=156.9
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|+++++|++++..+.+..+... +++.+....+
T Consensus 26 ~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~----~~~~iv~~~~ 101 (254)
T 1jyk_A 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK----YGVRLVFNDK 101 (254)
T ss_dssp CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH----HCCEEEECTT
T ss_pred ceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHh----CCcEEEECCC
Confidence 579999999999999999999999999999999999999999999999999998776666554433 3555544333
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCC-CCceEEEEcCCcCceeEeee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEP-SKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~-~~~~~v~~d~~~~~v~~~~e 159 (331)
..+.|++++++.+++.+. ++++++||+++..++ ++.+.+.+...++...++ ..|+++ +|++ +++..+.|
T Consensus 102 ~~~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~---~~~~~~~~~~~t~~~~~~~~~~~v~-~d~~-g~v~~~~e 171 (254)
T 1jyk_A 102 YADYNNFYSLYLVKEELA-----NSYVIDADNYLFKNM---FRNDLTRSTYFSVYREDCTNEWFLV-YGDD-YKVQDIIV 171 (254)
T ss_dssp TTTSCTHHHHHTTGGGCT-----TEEEEETTEEESSCC---CCSCCCSEEEEECEESSCSSCCEEE-ECTT-CBEEEEEC
T ss_pred ccCCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHH---HHHHHhCCceEEEEcccCCCCeEEE-ECCC-CeEEEEEE
Confidence 446799999999988872 689999999765442 222222222223224444 367755 7777 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhc--------ccC--CCCcccchHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHH
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRI--------ELK--PTSIEKEVFPEIAAENKLFAMVLP-GFWMDIGQPKDYITGLR 228 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l--------~~~--~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~d~~~a~~ 228 (331)
++. ..++++|+|+|+++.++.+ ..+ ...+-.++++.+....++.++.++ ++|.+|+|++||.++++
T Consensus 172 ~~~---~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~ 248 (254)
T 1jyk_A 172 DSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEE 248 (254)
T ss_dssp CCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHH
T ss_pred CCC---CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHH
Confidence 753 4589999999998744322 111 111223456666666779999887 78999999999999987
Q ss_pred HH
Q 020113 229 LY 230 (331)
Q Consensus 229 ~~ 230 (331)
.+
T Consensus 249 ~l 250 (254)
T 1jyk_A 249 IL 250 (254)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=217.92 Aligned_cols=219 Identities=23% Similarity=0.297 Sum_probs=161.2
Q ss_pred CeEEEEeCCCCcccCCCC-CCCCCCCceeCC-cchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILVGGFGTRLRPLT-LSVPKPLVDFAN-KPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt-~~~pK~llpi~g-~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (331)
|++||||||.|+||+|+| ...||+|+|++| +|||+|+++.+..+ |+++++|++++.. ..+.+++.+.. . ..+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~-~--~~i- 77 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELP-D--ENI- 77 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSC-G--GGE-
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccc-c--ceE-
Confidence 799999999999999999 679999999998 99999999999997 8999999998763 56677766521 1 122
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccc--cHH----HHHHHHhhcCCceEEE---ecCCCCceEEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY--PLK----QMIEFHRGRGGEASIM---VDEPSKYGVVVM 147 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~--~l~----~~l~~~~~~~~~~~i~---~~~~~~~~~v~~ 147 (331)
+.++.+.|++.++..+...+..+ +.+++++||.++.. ++. .+++.|.+.++.+++. ..+.+.||++..
T Consensus 78 -i~e~~~~gta~ai~~a~~~~~~~--~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~ 154 (336)
T 2x65_A 78 -IAEPMKKNTAPACFIGTKLADDD--EPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEI 154 (336)
T ss_dssp -EEESSCCCHHHHHHHHHTTSCTT--CEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEE
T ss_pred -EeCCCCCCcHHHHHHHHHhhCCC--CEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEE
Confidence 34556789999999888766322 27999999997643 444 4455566656666666 334478999988
Q ss_pred cCC----cCceeEeeecCCCCC--------CCeEEEEEEEEChhhH-hhccc-CC----------C---CcccchHHH--
Q 020113 148 EET----TGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVL-DRIEL-KP----------T---SIEKEVFPE-- 198 (331)
Q Consensus 148 d~~----~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l-~~l~~-~~----------~---~~~~~~l~~-- 198 (331)
+++ .+++..|.|||.... ..++++|+|+|+++.+ +.+.. .+ . ++..+.++.
T Consensus 155 ~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~ 234 (336)
T 2x65_A 155 GEELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVP 234 (336)
T ss_dssp EEEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSC
T ss_pred CCccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCc
Confidence 652 157999999986421 2489999999999876 33311 00 0 111233343
Q ss_pred -------HHh-cCcEEEEEeCceEEecCCHHHHHHH
Q 020113 199 -------IAA-ENKLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 199 -------l~~-~~~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
+++ ..++++++.+++|.|++|+++|.++
T Consensus 235 ~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 235 SISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp CCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred cccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 333 3579999999999999999999998
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=212.04 Aligned_cols=218 Identities=21% Similarity=0.325 Sum_probs=156.1
Q ss_pred CeEEEEeCCCCcccCCCC-CCCCCCCceeCC-cchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILVGGFGTRLRPLT-LSVPKPLVDFAN-KPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt-~~~pK~llpi~g-~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (331)
|++||||||.|+||+|+| ..+||+|+|++| +|||+|+++.+..+ |+++++|++++.. ..+.+++.. ..+
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------~~~- 75 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------IRL- 75 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------SEE-
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------Cce-
Confidence 579999999999999999 589999999998 99999999999998 8999999998763 444444432 222
Q ss_pred EeeCCcccCChHHHHHHHhhccC-CCCCcEEEEeCCeeccc--cHHHHHHH----HhhcCCceEEE---ecCCCCceEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLID-DSGEPFFVLNSDVISEY--PLKQMIEF----HRGRGGEASIM---VDEPSKYGVVV 146 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~-~~~~~~lv~~~D~i~~~--~l~~~l~~----~~~~~~~~~i~---~~~~~~~~~v~ 146 (331)
+.++.+.|++.++..+.. +.. ...+.+++++||.++.. .|..+++. +.+ ++.+++. ..+++.||++.
T Consensus 76 -i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~~~t~yG~I~ 152 (337)
T 2cu2_A 76 -LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTRPETEYGYIR 152 (337)
T ss_dssp -EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSCCSSSCEEE
T ss_pred -EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCCCCCCceEEE
Confidence 334567799999988877 531 11128999999997643 35554443 433 5556666 34457899998
Q ss_pred EcCC---cCceeEeeecCCCCC-------CCeEEEEEEEEChhhH-hhcccCC-C---Cc--------ccchHHH-----
Q 020113 147 MEET---TGKVEKFVEKPKNFV-------GNKINAGIYLLNPSVL-DRIELKP-T---SI--------EKEVFPE----- 198 (331)
Q Consensus 147 ~d~~---~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l-~~l~~~~-~---~~--------~~~~l~~----- 198 (331)
.+++ .+++..|.|||.... +.++++|+|+|+++.+ +.++... . .+ ..+.++.
T Consensus 153 ~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s 232 (337)
T 2cu2_A 153 LGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKIS 232 (337)
T ss_dssp EEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCC
T ss_pred ECCcccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccch
Confidence 8752 157999999986321 1699999999999876 5442110 0 00 0122222
Q ss_pred ----HHhc-CcEEEEEeCceEEecCCHHHHHHHHH
Q 020113 199 ----IAAE-NKLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 199 ----l~~~-~~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
++++ .++.+++.+++|.|++|+++|.++..
T Consensus 233 idy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 233 IDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 3443 57999999999999999999998844
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=190.98 Aligned_cols=212 Identities=21% Similarity=0.207 Sum_probs=155.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.|||||+|.|+||+ ||+|+|++|||||+|+++.+.++|+++|+|+++ .+.+++++.+ ++.++.+..+.
T Consensus 11 ~aIIlA~G~stRl~------~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~----~g~~v~~~~~~ 78 (256)
T 3tqd_A 11 RVIIPARFDSTRLP------GKALVDIAGKPMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED----FGAVVCMTSSD 78 (256)
T ss_dssp EEEEECCCC---CT------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCTT
T ss_pred eEEEEcCCCCCCCC------CCCeeeECCchHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----cCCeEEEeCCC
Confidence 69999999999994 799999999999999999999999999999885 3567777665 46677666666
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhc-CCce-EEE--e------cCCCCceEEEEcC
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGR-GGEA-SIM--V------DEPSKYGVVVMEE 149 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~-~~~~-~i~--~------~~~~~~~~v~~d~ 149 (331)
.+.|+.. +..+++.+.....+.++++.||. +....+.++++.+.+. ++++ ++. + .++..++ +.+|+
T Consensus 79 ~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk-vv~d~ 156 (256)
T 3tqd_A 79 HQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK-VVLNR 156 (256)
T ss_dssp CCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE-EEECT
T ss_pred CCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE-EEECC
Confidence 6677754 78888887421223899999999 3356799999999764 3344 333 2 3444444 45777
Q ss_pred CcCceeEeeecCCC-C-------------CCCeEEEEEEEEChhhHhhcc-cCCCCccc----chHHHHHhcCcEEEEEe
Q 020113 150 TTGKVEKFVEKPKN-F-------------VGNKINAGIYLLNPSVLDRIE-LKPTSIEK----EVFPEIAAENKLFAMVL 210 (331)
Q Consensus 150 ~~~~v~~~~ek~~~-~-------------~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~----~~l~~l~~~~~i~~~~~ 210 (331)
+ |+++.|.++|-. + .+.+...|+|.|++++++.+. .....+|. +.++.|....++.+++.
T Consensus 157 ~-g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr~le~G~~i~~~~~ 235 (256)
T 3tqd_A 157 R-NYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVA 235 (256)
T ss_dssp T-SBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCCEEEEC
T ss_pred C-CEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHHHHHCCCeEEEEEe
Confidence 7 999999998641 1 256899999999999999884 33334433 23454444457999999
Q ss_pred Cce-EEecCCHHHHHHHHH
Q 020113 211 PGF-WMDIGQPKDYITGLR 228 (331)
Q Consensus 211 ~~~-~~~i~t~~d~~~a~~ 228 (331)
+++ |.+||||+||.++++
T Consensus 236 ~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 236 KSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp SSCCCCCCSSHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHH
Confidence 875 899999999998864
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=191.38 Aligned_cols=214 Identities=21% Similarity=0.242 Sum_probs=159.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+.|||||+|.|+|| | +|+|+|++|+|||+|+++.+.++|+++|+|+++ .+.+.+++.+ ++.++.+..+
T Consensus 19 ~~aIIlA~G~stRl-p-----~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~----~g~~v~~~~~ 86 (264)
T 3k8d_A 19 FVVIIPARYASTRL-P-----GKPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEVCMTRA 86 (264)
T ss_dssp CEEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCT
T ss_pred eEEEEEcCCCCCCC-C-----CcceeeECCeEHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----cCCEEEEecC
Confidence 36999999999999 2 499999999999999999999999999999884 4566666665 4567766556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecC------CCCceEEEEcC
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDE------PSKYGVVVMEE 149 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~------~~~~~~v~~d~ 149 (331)
..+.|+.. +..+.+.+.....+.++++.||. +....++++++.+.+.+++++++ +.+ +.... +.+|+
T Consensus 87 ~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vk-Vv~d~ 164 (264)
T 3k8d_A 87 DHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVK-VVLDA 164 (264)
T ss_dssp TCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCE-EEECT
T ss_pred CCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceE-EEECC
Confidence 66677765 77777777421223899999999 44667999999998877776666 333 33333 45687
Q ss_pred CcCceeEeeecCCC-------------CCCCeEEEEEEEEChhhHhhcc-cCCCCccc----chHHHHHhcCcEEEEEeC
Q 020113 150 TTGKVEKFVEKPKN-------------FVGNKINAGIYLLNPSVLDRIE-LKPTSIEK----EVFPEIAAENKLFAMVLP 211 (331)
Q Consensus 150 ~~~~v~~~~ek~~~-------------~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~----~~l~~l~~~~~i~~~~~~ 211 (331)
+ |++..|.++|-. +.+.+.++|+|.|++++++.+. .....+|. +.++.|....++.++...
T Consensus 165 ~-g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~ 243 (264)
T 3k8d_A 165 E-GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQ 243 (264)
T ss_dssp T-SBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECS
T ss_pred C-CeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHHHCCCceEEEEeC
Confidence 7 999999998631 2257999999999999998873 22333332 234444444578888654
Q ss_pred -ceEEecCCHHHHHHHHHH
Q 020113 212 -GFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 212 -~~~~~i~t~~d~~~a~~~ 229 (331)
.+|.+||||+||.+++..
T Consensus 244 ~~~~~~IdtpeDl~~a~~~ 262 (264)
T 3k8d_A 244 EVPGTGVDTPEDLERVRAE 262 (264)
T ss_dssp CCCSCCCCSHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH
Confidence 458999999999999764
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=184.23 Aligned_cols=215 Identities=17% Similarity=0.189 Sum_probs=159.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHH-HHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l-~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.|||||+|.|+||+ +|+|+|++|+|||+|++ +.+.++++++|+|+++. +.+.+++.+ ++.++.+..+
T Consensus 3 ~aiIlA~G~stR~~------~K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~~----~g~~v~~~~~ 70 (253)
T 4fcu_A 3 HIVIPARFSSSRLP------GKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD--ERIAEICRA----EGVDVVLTSA 70 (253)
T ss_dssp EEEEECCSCCTTST------TGGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHT----TTCCEEECCT
T ss_pred EEEEEeCCCCCCCC------CCceeeECCeEhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHHH----cCCeEEEeCC
Confidence 48999999999995 49999999999999999 99999899999999863 556666654 4566655545
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcC--CceEEE--------ecCCCCceEEEEc
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRG--GEASIM--------VDEPSKYGVVVME 148 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~--~~~~i~--------~~~~~~~~~v~~d 148 (331)
..+.|+ +++..++..+.....+.++++.||. +....+.++++.+.+.+ ..++++ +.+|..+. +..|
T Consensus 71 ~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~k-vv~d 148 (253)
T 4fcu_A 71 DHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVK-VVMS 148 (253)
T ss_dssp TCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCE-EEEC
T ss_pred CCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccE-EEEC
Confidence 555666 5788888887532223899999999 34567999999998763 234554 24566654 4567
Q ss_pred CCcCceeEeeecCC----C---------CCCCeEEEEEEEEChhhHhhccc-CCCCccc----chHHHHHhcCcEEEEEe
Q 020113 149 ETTGKVEKFVEKPK----N---------FVGNKINAGIYLLNPSVLDRIEL-KPTSIEK----EVFPEIAAENKLFAMVL 210 (331)
Q Consensus 149 ~~~~~v~~~~ek~~----~---------~~~~~~~~Giy~~~~~~l~~l~~-~~~~~~~----~~l~~l~~~~~i~~~~~ 210 (331)
++ |+++.|.++|- . +...+.++|+|.|++++|+.+.. ....++. +.++.+....++.++..
T Consensus 149 ~~-g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~lr~l~~G~~I~~~~~ 227 (253)
T 4fcu_A 149 KQ-NEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVA 227 (253)
T ss_dssp TT-SBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEEC
T ss_pred CC-CeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCcccchhHHHHHHHHHCCCceEEEEe
Confidence 77 99999988642 1 23468899999999999988742 2333321 23444444447999999
Q ss_pred Cce-EEecCCHHHHHHHHHHHH
Q 020113 211 PGF-WMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 211 ~~~-~~~i~t~~d~~~a~~~~l 231 (331)
+++ |.+||||+||.+++..+.
T Consensus 228 ~~~~~~~IdtpeDL~~a~~~l~ 249 (253)
T 4fcu_A 228 EANLPPGVDTQADLDRLNNMPV 249 (253)
T ss_dssp SSCCCCCCCSHHHHHHHHTSCG
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
Confidence 998 999999999999987543
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=181.36 Aligned_cols=208 Identities=19% Similarity=0.237 Sum_probs=150.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.|||||||.|+||+ ||+|+|++|+|||+|+++.+.++ +++|+|++++ +.+.+++.+ + .++.+..+.
T Consensus 4 ~aiIlA~G~g~R~~------~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~----~-~~~~~~~~~ 69 (234)
T 2y6p_A 4 AVIIPARLGSTRLK------EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDS--ERVKEVVED----L-CEVFLTPSD 69 (234)
T ss_dssp EEEEECCSCCTTTT------TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT----T-SEEEECCTT
T ss_pred EEEEEcCCCCCCCC------CCcceeECCEEHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh----c-eEEEECCcc
Confidence 68999999999996 79999999999999999999999 9999999875 556666654 2 455444444
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe-ecc-ccHHHHHHHHhhcCCceEEE-ec-----CCCCceEEEEcCCcCc
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEFHRGRGGEASIM-VD-----EPSKYGVVVMEETTGK 153 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i~~-~~l~~~l~~~~~~~~~~~i~-~~-----~~~~~~~v~~d~~~~~ 153 (331)
...|++.++ .+++.+.. +.+++++||. +.+ .++.++++.|.+.++.+++. .. ++..++ +..+++ ++
T Consensus 70 ~~~g~~~~~-~~~~~~~~---~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-g~ 143 (234)
T 2y6p_A 70 LPSGSDRVL-YVVRDLDV---DLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLDRE-GY 143 (234)
T ss_dssp CCSHHHHHH-HHHTTCCC---SEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEECTT-SB
T ss_pred cccchHHHH-HHHHhCCC---CEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEcCC-CC
Confidence 455666654 55555532 3899999999 665 67999999998776444554 21 344444 344666 89
Q ss_pred eeEeeecCCC-CC-----CCeEEEEEEEEChhhHhhccc-CCCCcc-cc---hHHHHHhcCcEEEEEeCceEEecCCHHH
Q 020113 154 VEKFVEKPKN-FV-----GNKINAGIYLLNPSVLDRIEL-KPTSIE-KE---VFPEIAAENKLFAMVLPGFWMDIGQPKD 222 (331)
Q Consensus 154 v~~~~ek~~~-~~-----~~~~~~Giy~~~~~~l~~l~~-~~~~~~-~~---~l~~l~~~~~i~~~~~~~~~~~i~t~~d 222 (331)
+..+.+||.. .. ..+.++|+|+|+++.+..+.. ....++ .+ .++.+....++.+++.+++|.|++||+|
T Consensus 144 v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~d 223 (234)
T 2y6p_A 144 ALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEED 223 (234)
T ss_dssp EEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHH
T ss_pred EeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHH
Confidence 9999988642 11 357899999999998876522 111111 11 2233344567999999999999999999
Q ss_pred HHHHHHH
Q 020113 223 YITGLRL 229 (331)
Q Consensus 223 ~~~a~~~ 229 (331)
|..++..
T Consensus 224 l~~a~~~ 230 (234)
T 2y6p_A 224 LKIVEEK 230 (234)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-23 Score=178.16 Aligned_cols=219 Identities=18% Similarity=0.207 Sum_probs=152.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.|||||||.|+||+ +|+|+|++|+|||+|+++.+.++++++|+|++++ +.+.+++.+ ++..+....+
T Consensus 3 ~~aiIlA~G~g~R~~------~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~~~~ 70 (262)
T 1vic_A 3 FTVIIPARFASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKS----FGAEVCMTSV 70 (262)
T ss_dssp CEEEEECCCCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEECCC
T ss_pred cEEEEEcCCCCCCCC------CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh----cCCEEEECCc
Confidence 469999999999994 4999999999999999999999999999999874 456666654 3555533222
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCC-----CCceEEEEcCC
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEP-----SKYGVVVMEET 150 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~-----~~~~~v~~d~~ 150 (331)
..+.|++ ++..+...+.....+.+++++||. +...++..+++.+.+.++++++. +.++ ..+..+..+++
T Consensus 71 ~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (262)
T 1vic_A 71 NHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD 149 (262)
T ss_dssp SSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT
T ss_pred cccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCC
Confidence 3444554 455566666432223899999998 34567999999998877666554 3332 23444444666
Q ss_pred cCceeEeeecC-----------------CCCCCCeEEEEEEEEChhhHhhccc-CCCCcc-cchHH--HHH-hcCcEEEE
Q 020113 151 TGKVEKFVEKP-----------------KNFVGNKINAGIYLLNPSVLDRIEL-KPTSIE-KEVFP--EIA-AENKLFAM 208 (331)
Q Consensus 151 ~~~v~~~~ek~-----------------~~~~~~~~~~Giy~~~~~~l~~l~~-~~~~~~-~~~l~--~l~-~~~~i~~~ 208 (331)
|++..|.+++ +.+...+.++|+|+|+++.+..+.. .....+ .+++. .++ ...++.++
T Consensus 150 -g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~ 228 (262)
T 1vic_A 150 -GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVE 228 (262)
T ss_dssp -SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEE
T ss_pred -CCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHHHHHCCCeEEEE
Confidence 8888777653 2334568999999999998876521 111111 11111 234 34479999
Q ss_pred EeC-ceEEecCCHHHHHHHHHHHHhh
Q 020113 209 VLP-GFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 209 ~~~-~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
+.+ ++|.||+||+||..++..+...
T Consensus 229 ~~~~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 229 LAKEVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp ECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 998 7899999999999998876543
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=180.83 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=134.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||+|+ ||+|+|++|+|||+|+++.+.++ +++++|++ +..+.+.+++.+ .++..+.++.+
T Consensus 19 ~~~iIlA~G~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~---~~~~~~~~v~~ 89 (232)
T 2xme_A 19 MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLK---DKGFNYKIVRH 89 (232)
T ss_dssp EEEEEEECC------CC----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHT---TSCCCEEEEEC
T ss_pred ceEEEECCcCcCcCCCC----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHH---hcCCcEEEEEC
Confidence 47999999999999985 99999999999999999999999 99999998 666666666432 23444555554
Q ss_pred Ccc-cCChHHHHHHHhhccCCCCCcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE-e----cCCCCceEEEEcCCcCc
Q 020113 81 TEP-LGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM-V----DEPSKYGVVVMEETTGK 153 (331)
Q Consensus 81 ~~~-~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~-~----~~~~~~~~v~~d~~~~~ 153 (331)
..+ .|++++++.+++.+.+ ++++++||++++.+ ++.+++. . . .++ . .++..++.+..+ + ++
T Consensus 90 ~~~~~g~~~~i~~a~~~~~~----~~lv~~~D~p~~~~~~~~l~~~----~-~-~~~~~~~~~~~~~~~~~v~~~-~-g~ 157 (232)
T 2xme_A 90 DRPEKGNGYSLLVAKNHVED----RFILTMGDHVYSQQFIEKAVRG----E-G-VIADREPRFVDIGEATKIRVE-D-GR 157 (232)
T ss_dssp SCGGGCHHHHHHTTGGGCCS----SEEEEETTEEECHHHHHHHTTC----C-E-EEEESSCSSSCTTTSCEEEEE-T-TE
T ss_pred CCCCCCcHHHHHHHHHHCCC----CEEEEcCCcccCHHHHHHHHhC----C-C-cEEEccccccCCCcceEEEEc-C-CE
Confidence 443 7999999999988852 89999999976543 3444432 1 1 222 1 234456666665 4 78
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHHH
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP-GFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~d~~~a~~~ 229 (331)
+..+.+++. ..+++++|+|+++++++..+.......+.. ++.+++.+.+..+.++ ++|.+++||+||.+++..
T Consensus 158 v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~g~~~-l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 158 VAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDREEIP-LSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp EEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTSSCCC-HHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred EEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhcChhH-HHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 888888764 356889999999999988764322222222 3344444456666765 689999999999887653
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-22 Score=171.20 Aligned_cols=215 Identities=20% Similarity=0.198 Sum_probs=149.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCC-CEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi-~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.|||||+|.|+|| | ||+|+|++|+|||+|+++.+.++++ ++++|++++ +.+.+++.+ +++++....
T Consensus 3 ~~aiIlA~G~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~~~ 70 (245)
T 1h7e_A 3 AVIVIPARYGSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA----FGGKAIMTR 70 (245)
T ss_dssp EEEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH----TTCEEEECC
T ss_pred eEEEEEcCCcCCCC-C-----CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH----cCCeEEeCC
Confidence 36899999999999 5 8999999999999999999999996 999999975 566666665 355554433
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhc-CCceEEE---e-----cCCCCceEEEEc
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGR-GGEASIM---V-----DEPSKYGVVVME 148 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~-~~~~~i~---~-----~~~~~~~~v~~d 148 (331)
+....|++. +..++..+.. +.+++++||.. ....+.++++.+.+. ++++++. . .++.... +..+
T Consensus 71 ~~~~~g~~~-~~~~~~~~~~---~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (245)
T 1h7e_A 71 NDHESGTDR-LVEVMHKVEA---DIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVK-VVVN 145 (245)
T ss_dssp SCCSSHHHH-HHHHHHHSCC---SEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCE-EEEC
T ss_pred CccCCcHHH-HHHHHHhCCC---CEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcE-EEEC
Confidence 344556644 4455555532 28999999993 456799999999877 6666554 3 0122222 2225
Q ss_pred CCcCceeEeeecCCC-CC-----CCeEEEEEEEEChhhHhhcc-cCCCCcc-cchHHHH---HhcCcEEEEEeCceEEec
Q 020113 149 ETTGKVEKFVEKPKN-FV-----GNKINAGIYLLNPSVLDRIE-LKPTSIE-KEVFPEI---AAENKLFAMVLPGFWMDI 217 (331)
Q Consensus 149 ~~~~~v~~~~ek~~~-~~-----~~~~~~Giy~~~~~~l~~l~-~~~~~~~-~~~l~~l---~~~~~i~~~~~~~~~~~i 217 (331)
++ +++..+.+++.. .. ..+.++|+|+|+++.+..+. .....++ .+.++.+ ....++.+++.++.|.|+
T Consensus 146 ~~-g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dI 224 (245)
T 1h7e_A 146 TR-QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGV 224 (245)
T ss_dssp TT-CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCS
T ss_pred CC-CcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCC
Confidence 55 788888776432 11 25789999999999876542 1111111 1233222 234579999999899999
Q ss_pred CCHHHHHHHHHHHHhh
Q 020113 218 GQPKDYITGLRLYLDF 233 (331)
Q Consensus 218 ~t~~d~~~a~~~~l~~ 233 (331)
+||+||..++..+..+
T Consensus 225 dtp~Dl~~a~~~l~~~ 240 (245)
T 1h7e_A 225 DTPACLEKVRALMAQE 240 (245)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998776544
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=164.74 Aligned_cols=218 Identities=12% Similarity=0.114 Sum_probs=147.2
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChH-HHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~-~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.|||||||.|+||++ ..+||+|+|++|+|||+|+++.+.+++ +++|+|+++++.. .+.+.+..+.... .+.++.
T Consensus 5 ~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~--~~~~~~ 80 (246)
T 3f1c_A 5 YAQILAGGKGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDD--RIVVIE 80 (246)
T ss_dssp EEEEECC-----C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCT--TEEEEE
T ss_pred EEEEECCccccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCC--CEEEEC
Confidence 599999999999987 467999999999999999999999998 9999999987654 3455555532111 233332
Q ss_pred CCcccCChHHHHHHHhhccC----CCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcC
Q 020113 80 ETEPLGTAGPLALARDKLID----DSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTG 152 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~----~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~ 152 (331)
.+.+..++++.+++.+.. ...+.++++.||. +....+.++++.+.+.++..+++ +.+ .++..+++ +
T Consensus 81 --~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d----~i~~~~~~-~ 153 (246)
T 3f1c_A 81 --GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALD----TIVESSNH-E 153 (246)
T ss_dssp --CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSS----CEEECSSS-S
T ss_pred --CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccc----eEEEecCC-C
Confidence 234667899999998864 1123899999998 55667999999998877655555 443 34444444 5
Q ss_pred ceeEeeecCCCCCCCeEEEEEEEEChhhHhhc-ccCCC---CcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 020113 153 KVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-ELKPT---SIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 153 ~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~~~~---~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
.+..+.+|+. .+..-..++|+.+.+... ..... ....|....+...| ++..++.+.+|.+|+||+||..++
T Consensus 154 ~v~~~~~r~~----l~~~qtpq~f~~~~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae 229 (246)
T 3f1c_A 154 VITDIPVRDH----MYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVAN 229 (246)
T ss_dssp BCCBCCCGGG----EEEEEEEEEEEHHHHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHH
T ss_pred eEEEecChHH----hhhhcCCceeEHHHHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHH
Confidence 6666666643 122234578997765543 21101 11234555555555 588888888899999999999998
Q ss_pred HHHHhhh
Q 020113 228 RLYLDFL 234 (331)
Q Consensus 228 ~~~l~~~ 234 (331)
..+..+.
T Consensus 230 ~~l~~~~ 236 (246)
T 3f1c_A 230 AIIQERI 236 (246)
T ss_dssp HHHHHHC
T ss_pred HHHhccc
Confidence 8776554
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=160.74 Aligned_cols=199 Identities=11% Similarity=0.119 Sum_probs=138.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.|||||||.|+||+ ||+|+|++|+|||+|+++.+.+++ +++|+|+++. +.+.+++.+ ++.++ +..+
T Consensus 6 ~aiIlA~G~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~-~~~~ 72 (228)
T 1ezi_A 6 IAVILARQNSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN----FGVEV-VLRP 72 (228)
T ss_dssp EEEEECCSSCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH----TTCEE-EECC
T ss_pred EEEEecCCCCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH----cCCEE-EeCc
Confidence 39999999999997 799999999999999999999998 7999999963 445556554 34555 2222
Q ss_pred C----cccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE---ecC-CCCceEEEEcCC
Q 020113 81 T----EPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM---VDE-PSKYGVVVMEET 150 (331)
Q Consensus 81 ~----~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~---~~~-~~~~~~v~~d~~ 150 (331)
. ...|+.++++.+++.+... .+.+++++||.. ....++.+++.+.+.++++++. ..+ |. +...++++
T Consensus 73 ~~~~~~~~g~~~sv~~~l~~~~~~-~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~ 149 (228)
T 1ezi_A 73 AELASDTASSISGVIHALETIGSN-SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPL--KTLLQINN 149 (228)
T ss_dssp C------CHHHHHHHHHHHHHTCC-SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTT--SCEEECC-
T ss_pred hHHcCCCCChHHHHHHHHHHhCCC-CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcc--eeeEEcCC
Confidence 2 3456788999999988421 238999999983 4567999999887766666555 333 33 33333655
Q ss_pred cCceeEeeecC------CC-CCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeC-ceEEecCCHHH
Q 020113 151 TGKVEKFVEKP------KN-FVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP-GFWMDIGQPKD 222 (331)
Q Consensus 151 ~~~v~~~~ek~------~~-~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~d 222 (331)
|.+..+.++. +. ......++|+|++++..+..... + ...++..++.+ ..|.||+||+|
T Consensus 150 -g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~--------~-----~g~~v~~~~~~~~~~~dIdtpeD 215 (228)
T 1ezi_A 150 -GEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNC--------F-----FIAPTKLYIMSHQDSIDIDTELD 215 (228)
T ss_dssp --CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHTS--------S-----CCSSCEEEECCTGGGCCCCSHHH
T ss_pred -CcEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCCc--------c-----cCCceEEEEeCcccccCCCCHHH
Confidence 7888886621 11 11235678999999876654210 0 03356677765 57999999999
Q ss_pred HHHHHHHH
Q 020113 223 YITGLRLY 230 (331)
Q Consensus 223 ~~~a~~~~ 230 (331)
|..+...+
T Consensus 216 l~~a~~~l 223 (228)
T 1ezi_A 216 LQQAENIL 223 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=160.98 Aligned_cols=215 Identities=11% Similarity=0.122 Sum_probs=135.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (331)
|.|||||||.|+||++ ..+||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+++++.+++-.........
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIIT 80 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEE
Confidence 4799999999999987 568999999999999999999999984 999999998876 567777665421111111111
Q ss_pred eCCcccCChHHHHHHHhhccC--C--CCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE--ecCCCCceEEEEcCC
Q 020113 79 QETEPLGTAGPLALARDKLID--D--SGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM--VDEPSKYGVVVMEET 150 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~--~--~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~--~~~~~~~~~v~~d~~ 150 (331)
....|..++++.++..+.. . ..+.+++++||+ +....+..+++.|.+.++ ..++ +.++ +..+++
T Consensus 81 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~-~~~~~~~~~~-----~~~~~~ 152 (236)
T 2vsh_A 81 --KGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA-VDTVVEAVDT-----IVESTN 152 (236)
T ss_dssp --ECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE-EEEEEECCSC-----EEECSS
T ss_pred --CCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc-EEEEEecccc-----EEEeCC
Confidence 1234678899999888741 1 112789999999 445679999999887654 2222 3332 222344
Q ss_pred cC-ceeEeeecCCCCCCCeEEEEEEEEChhhHhhc-ccCCCCc---ccchHHHHHhcC-cEEEEEeCceEEecCCHHHHH
Q 020113 151 TG-KVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-ELKPTSI---EKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYI 224 (331)
Q Consensus 151 ~~-~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~---~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~ 224 (331)
| ++..+.+++.. ......|+|+++.+..+ ....... ..+.++.+...+ ++..++.+++|.|++||+||.
T Consensus 153 -g~~~~~~~~~~~~----~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~ 227 (236)
T 2vsh_A 153 -GQFITDIPNRAHL----YQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLK 227 (236)
T ss_dssp -SSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHH
T ss_pred -CCeeeeecChHHh----eeecCCcEecHHHHHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHH
Confidence 7 77777776431 11234789998876543 2211111 112234444444 688888888899999999999
Q ss_pred HHHHHH
Q 020113 225 TGLRLY 230 (331)
Q Consensus 225 ~a~~~~ 230 (331)
.++..+
T Consensus 228 ~a~~~~ 233 (236)
T 2vsh_A 228 IAKSMI 233 (236)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887643
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=157.75 Aligned_cols=208 Identities=16% Similarity=0.178 Sum_probs=140.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChH-HHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~-~i~~~~~~~~~~~~~~v~~~ 78 (331)
|.+||||||.|+||+. ..||+|+|++|+|||+|+++.+.+++ ++++++++++... .+.+++. ..+ +.++
T Consensus 3 ~~~vIlA~G~g~R~~~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~----~~~--v~~~ 73 (223)
T 2xwl_A 3 TVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG----GED--SVIV 73 (223)
T ss_dssp EEEEEECCCCCGGGTS---SSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC----BTT--EEEE
T ss_pred eEEEEECCccCcccCC---CCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc----cCC--eEEE
Confidence 4699999999999983 57999999999999999999999988 9999999987653 3444331 112 3333
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCc
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~ 153 (331)
.. ..+.++++..++..+.. .+.+++++||. +....+..+++.+. ...++++. ..++.. + .+++ |+
T Consensus 74 ~~--~~~~~~~i~~al~~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d~~~--~--~~~~-g~ 143 (223)
T 2xwl_A 74 SG--GVDRTESVALALEAAGD--AEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPADTIK--A--VDAN-GA 143 (223)
T ss_dssp EC--CSSHHHHHHHHHTTCTT--CSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSSCEE--E--ECTT-SB
T ss_pred cC--CCCHHHHHHHHHHhcCC--CCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecccceE--E--EcCC-Cc
Confidence 32 23568899999988831 22788999998 34457999999883 22344443 333322 2 3555 78
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhc-ccCCCCcccchHHHHHhc-CcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-ELKPTSIEKEVFPEIAAE-NKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
+..+.|++.- ......|+|++..+..+ ......+..+....+... .++..++.++.|.|++||+||..+...+.
T Consensus 144 ~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 219 (223)
T 2xwl_A 144 VLGTPERAGL----RAVQTPQGFHADVLRRAYARATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLA 219 (223)
T ss_dssp EEECCCGGGE----EEECSCEEEEHHHHHHHHTTCCSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred EEeecChHHh----eeeeCCcccCHHHHHHHHHHhhCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHh
Confidence 8888877531 11123578888766554 221111222334444443 35888888888999999999999976543
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=156.25 Aligned_cols=211 Identities=13% Similarity=0.195 Sum_probs=133.2
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.|||||||.|+||+. ..||+|+|++|+|||+|+++.+.++ ++++|+|++++..+.+.+++. ..++.++.++.
T Consensus 6 ~aiIlAaG~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~---~~~~~~v~~~~- 78 (228)
T 2yc3_A 6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE---ESIDVDLSFAI- 78 (228)
T ss_dssp EEEEECCCCC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTT---TTSSSEEEEEC-
T ss_pred EEEEECCccccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHH---HhCCCcEEEEC-
Confidence 699999999999973 5799999999999999999999998 799999999877655544432 23344555553
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
...|..++++.+++.+.... +.++++.||. +....++.+++.+.+.++ ..+....... +..++++ +.+..+.
T Consensus 79 -~~~~~~~sv~~al~~~~~~~-~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~-~i~~~~~~~~--~~~~~~~-~~v~~~~ 152 (228)
T 2yc3_A 79 -PGKERQDSVYSGLQEIDVNS-ELVCIHDSARPLVNTEDVEKVLKDGSAVGA-AVLGVPAKAT--IKEVNSD-SLVVKTL 152 (228)
T ss_dssp -CCSSHHHHHHHHHTTSCTTC-SEEEEEETTCTTCCHHHHHHHHHHHHHHSE-EEEEEECCSC--CCCBCTT-SCBCCCC
T ss_pred -CCCCHHHHHHHHHHhhccCC-CEEEEecCCCccCCHHHHHHHHHHHHhcCc-eEEEEeccce--EEEEcCC-CceEEec
Confidence 23578899999999886422 2788999997 445669999998876653 2222211111 1122433 4454433
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhh-cc---cCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDR-IE---LKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~-l~---~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
+++. .......|+|+.+.+.. +. ..... ..+....+.+.+ ++..+..+..|.+++||+||..++..+
T Consensus 153 ~~~~----~~~~~~~~~f~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l 224 (228)
T 2yc3_A 153 DRKT----LWEMQTPQVIKPELLKKGFELVKSEGLE-VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (228)
T ss_dssp SCCC----CEEEEEEEEECHHHHHHHHHHHHHHTCC-CCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred Cccc----eEEEeCCcEEEHHHHHHHHHHHHhcCCC-cccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence 3221 12333489999875543 21 11111 234455555544 465455455799999999999987654
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-19 Score=152.42 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=127.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.|||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++ +++++|+++++.+.+.+ +.+.+. ..+.+.
T Consensus 7 ~~aiIlA~G~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~---~~i~~~- 78 (231)
T 1vgw_A 7 NIALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFP---QVRVWK- 78 (231)
T ss_dssp EEEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCT---TSEEEC-
T ss_pred eEEEEEcccccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCC---CceEEE-
Confidence 4699999999999987 67999999999999999999999986 99999999876655555 544211 123333
Q ss_pred CCcccCChHHHHHHHhhccCC----CCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEE--ecCCCCceEEEEcCCc
Q 020113 80 ETEPLGTAGPLALARDKLIDD----SGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIM--VDEPSKYGVVVMEETT 151 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~----~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~--~~~~~~~~~v~~d~~~ 151 (331)
....|+++++..++..+... ..+.+++++||. + ....+.++++.+.+.+..+.++ ..+. +...++
T Consensus 79 -~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~- 151 (231)
T 1vgw_A 79 -NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADT-----LKRAES- 151 (231)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSC-----EEEESS-
T ss_pred -cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEeecccc-----eEEeCC-
Confidence 34568899999998887420 122899999998 3 3456899999887654233223 2222 111233
Q ss_pred CceeEeeecCCCCCCCeEEEEEEEEChhhHhhc-ccCCCCcccchHHHHHh-cCcEEEEEeCceEEecCCHHHHHHHHHH
Q 020113 152 GKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-ELKPTSIEKEVFPEIAA-ENKLFAMVLPGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 152 ~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~d~~~a~~~ 229 (331)
|++....++ .......+.|+|+.+.+..+ .........+....+.. ..++..+..++.|.|++||+||..++..
T Consensus 152 g~i~~~~~~----~~~~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~ 227 (231)
T 1vgw_A 152 GQISATVDR----SGLWQAQTPQLFQAGLLHRALAAENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 227 (231)
T ss_dssp SBEEEEECC----TTEEEEEEEEEEEHHHHHHHHHC----CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred CceEecCCh----HHheeeeCCcEecHHHHHHHHHHHhhcCCCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHH
Confidence 555433322 11122335899998876554 21111111122222222 2357777777789999999999988654
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-21 Score=163.23 Aligned_cols=191 Identities=17% Similarity=0.209 Sum_probs=131.9
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|++||||||. +||++.+...||+|+|++|+|||+|+++.+..++. ++++++.. +.+++++ ++.+
T Consensus 3 ~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~-------~~~~----- 66 (232)
T 2dpw_A 3 PSAIVLAGGK-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP-------ALTL----- 66 (232)
T ss_dssp CEEEEECCCB-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC-------SEEE-----
T ss_pred eeEEEECCCC-CccccccCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc-------CeEe-----
Confidence 5799999999 66665544579999999999999999999999988 88887653 2222222 3333
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-e--cCC-CCceEEEEcCCcCce
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-V--DEP-SKYGVVVMEETTGKV 154 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~--~~~-~~~~~v~~d~~~~~v 154 (331)
..+.|++++++.+++.+. + ++++++||+ +....++++++ + +.++++++. . +++ ..|+.+ . .++
T Consensus 67 ~~~~g~~~~i~~a~~~~~-~---~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~----~-~~v 135 (232)
T 2dpw_A 67 PDRGGLLENLEQALEHVE-G---RVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAVEARFPRT----K-RTY 135 (232)
T ss_dssp CCCSSHHHHHHHHHHTCC-S---EEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHHHHHCTTC----C-CCC
T ss_pred cCCCCHHHHHHHHHHHcC-C---CEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccchhhhCCCc----c-eeE
Confidence 456799999999999885 2 899999999 55667899998 6 555555544 2 111 122211 1 346
Q ss_pred eEeeecCCCCCCCeEEEEEEEEChhhHhhccc-------CC---------------------CCcccchHHHHHh--cCc
Q 020113 155 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL-------KP---------------------TSIEKEVFPEIAA--ENK 204 (331)
Q Consensus 155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~-------~~---------------------~~~~~~~l~~l~~--~~~ 204 (331)
..+.||| ..++|+|+|+++.+..+.. .. .....++++.+.. ..+
T Consensus 136 ~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~ 209 (232)
T 2dpw_A 136 ARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVE 209 (232)
T ss_dssp EEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSC
T ss_pred EEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcE
Confidence 6666665 4889999999998876521 10 1112244444432 246
Q ss_pred EEEEEe--CceEEecCCHHHHH
Q 020113 205 LFAMVL--PGFWMDIGQPKDYI 224 (331)
Q Consensus 205 i~~~~~--~~~~~~i~t~~d~~ 224 (331)
+..+.. .+.|.|+|||+||.
T Consensus 210 v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 210 ARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp EEEEECSCGGGTCCCCSHHHHC
T ss_pred EEEEecCChhhccCCCChhhcc
Confidence 777777 45699999999983
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=153.27 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=131.7
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.|||||+|.|+||. +|+|+|++|+|||+|+++.+.+++ +++|+|+++ .+.+.+++.+ +++++.....
T Consensus 5 ~aiIlA~G~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~----~g~~~~~~~~ 72 (229)
T 1qwj_A 5 AALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ----FGAQVHRRSS 72 (229)
T ss_dssp EEEEECCSCCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH----TTCEEEECCG
T ss_pred EEEEEcCCCCCCCC------CcccceECCEEHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH----cCCEEEeChh
Confidence 58999999999994 499999999999999999999998 699999884 4556666654 3555532221
Q ss_pred ---CcccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcC
Q 020113 81 ---TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTG 152 (331)
Q Consensus 81 ---~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~ 152 (331)
....+..+++..++..+.. .+.+++++||.. ....+..+++.+.+.+++.++. ..+|..+.+ .| ...
T Consensus 73 ~~~~~~~~~~~~v~~al~~~~~--~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v--~~-~~~ 147 (229)
T 1qwj_A 73 ETSKDSSTSLDAIVEFLNYHNE--VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEI--QK-GVR 147 (229)
T ss_dssp GGSSTTCCHHHHHHHHHTTCTT--CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCC--CS-STT
T ss_pred hhcCCCCcHHHHHHHHHHhcCC--CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhc--cc-ccc
Confidence 1122334788888888732 238999999993 4567999999998877665443 333443332 12 100
Q ss_pred ceeE--eeec----C--CCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEE-EeC-ceEEecCCHHH
Q 020113 153 KVEK--FVEK----P--KNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAM-VLP-GFWMDIGQPKD 222 (331)
Q Consensus 153 ~v~~--~~ek----~--~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~-~~~-~~~~~i~t~~d 222 (331)
.+.. +.++ + ..+.....++|+|+|+++.+ + +. +..+....+ ..+ ++|.|||||+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~------------~~-~~~g~~~~~~~~~~~~~~dIdt~~D 212 (229)
T 1qwj_A 148 EVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--E------------MG-YLQGGKMAYYEMRAEHSVDIDVDID 212 (229)
T ss_dssp CCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--H------------TT-CSSCSSEEEEECCGGGCCCHHHHCS
T ss_pred ccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--c------------cc-cccCCeEEEEECCcccccCCCCHHH
Confidence 1111 1111 1 11123467999999999887 1 01 112332244 554 68999999999
Q ss_pred HHHHHHHHHh
Q 020113 223 YITGLRLYLD 232 (331)
Q Consensus 223 ~~~a~~~~l~ 232 (331)
|..++..+..
T Consensus 213 l~~a~~~~~~ 222 (229)
T 1qwj_A 213 WPIAEQRVLR 222 (229)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876543
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=148.12 Aligned_cols=183 Identities=22% Similarity=0.287 Sum_probs=118.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .||+|+|++|+|||+|+++.+.++++++++|+++++.+.+.+++.+... +...+.++.
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~-~~~~~~~~~- 74 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYK-DYKNIVVID- 74 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTT-TTTEEEE---
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhcc-CCCCEEEEE-
Confidence 8999999999999987 6999999999999999999999999999999999888888888876211 111343333
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhh-----cCCceEEE-ecCCCCceEEEEcCCcC
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRG-----RGGEASIM-VDEPSKYGVVVMEETTG 152 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~-----~~~~~~i~-~~~~~~~~~v~~d~~~~ 152 (331)
....|++++++.+++.+ .+ .+++++||+ +....+.++++.+.+ .+.+..+. +... . +
T Consensus 75 ~~~~g~~~si~~al~~~-~~---~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~-~----------~ 139 (196)
T 3rsb_A 75 TSGKGYIEDLNECIGYF-SE---PFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKE-K----------Y 139 (196)
T ss_dssp ------CCCCCTTTTTC-SS---CEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETT-T----------C
T ss_pred CCCCCcHHHHHHHHHhC-CC---CEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEcc-c----------c
Confidence 45678888898888887 22 899999999 456679999999986 44444333 1111 0 0
Q ss_pred ceeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 153 KVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 153 ~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
. .|......+..+++..++++. .......+.+++...|||||+||..+...+
T Consensus 140 ~------~~~~~~~~~~~~~l~~l~~~~--------------------~~~~~~~~~~~~~~~DIDt~eDl~~ae~ll 191 (196)
T 3rsb_A 140 P------NPSIDFNGLVPADINVVSPKH--------------------GYQKEEIMVIDELIFNINTKDDLKLAEMLL 191 (196)
T ss_dssp C------SCSCCSSSEEEEEEEEECSCS--------------------SCCCEEEEECSSCCEECCSHHHHHHHHHCC
T ss_pred C------CCCeeeccccceeeEEecCCC--------------------CcceeEEEEecceEEecCCHHHHHHHHHHH
Confidence 0 111111124445666666543 001222344446678999999999886543
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=142.08 Aligned_cols=185 Identities=15% Similarity=0.222 Sum_probs=127.8
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.+||||||.|+||++ ||+|+|++|+|||+|+++.+..+++++++|++++..+.+.+++.+ +++++... +.
T Consensus 7 ~~iIlA~G~~~R~g~-----~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~~ 76 (199)
T 2waw_A 7 TGVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL----DGLDIVLV-DD 76 (199)
T ss_dssp EEEEEESSCCTTTTS-----CGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC----TTSEEEEC-CC
T ss_pred EEEEECCCCCCCCCC-----CEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc----CCCEEEEC-CC
Confidence 689999999999964 899999999999999999999999999999998776666555443 35555432 34
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEeee
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
...|++++++.+++.+... .+.+++++||+. ....+..+++. +.+++.++... + ++-
T Consensus 77 ~~~g~~~~i~~al~~~~~~-~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~----------~---g~~----- 135 (199)
T 2waw_A 77 AGLGCSSSLKSALTWVDPT-AEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY----------A---NGI----- 135 (199)
T ss_dssp CCTTCCCHHHHHHHTSCTT-CSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE----------T---TEE-----
T ss_pred cccCHHHHHHHHHHhhhcc-CCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec----------C---Ccc-----
Confidence 4568999999999988421 238999999994 35668888887 33333221111 1 110
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhc-CcEEEEEe-CceEEecCCHHHHHHHHHHH
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAE-NKLFAMVL-PGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~-~~i~~~~~-~~~~~~i~t~~d~~~a~~~~ 230 (331)
..-++|+++.+..+.... ........+.+. .++..++. .+.|.|+|||+||..+...+
T Consensus 136 -----------~~P~~~~~~~l~~~~~~~--~~~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 136 -----------GHPFWVSRGVFGDLAELH--GDKGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp -----------EEEEEEEGGGHHHHHTCS--STTCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred -----------cCCEEEcHHHHHHHHhcC--CCHHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 112578888877663211 112222223332 35777776 45899999999999887654
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=161.96 Aligned_cols=303 Identities=15% Similarity=0.179 Sum_probs=185.2
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC-CcchHHHHHHHHHHc----CC--CEEEEEeccChHHHHHHHHHhhhccCeE
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV----GV--TEVVLAINYQPEVMLNFLKEFEKKLEIK 74 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~----gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 74 (331)
.+||||||.|+||+. ..||+|+|++ |+|||+|+++++... |. ..++++..+..+.+++++++ ...++..
T Consensus 94 avViLAGG~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~-~~~fg~~ 169 (488)
T 2i5k_A 94 AVLKLNGGLGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKK-YSANRIR 169 (488)
T ss_dssp EEEEECCCBSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGG-GCSSSCE
T ss_pred eEEEEcCCCcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHh-ccccCce
Confidence 579999999999986 7899999998 999999999998877 53 24444444778889999987 3445677
Q ss_pred EEEeeCC------------------------cccCChHHHHH--H---HhhccCCCCCcEEEEeCCeecc-ccHHHHHHH
Q 020113 75 ITCSQET------------------------EPLGTAGPLAL--A---RDKLIDDSGEPFFVLNSDVISE-YPLKQMIEF 124 (331)
Q Consensus 75 v~~~~~~------------------------~~~G~~~al~~--~---~~~~~~~~~~~~lv~~~D~i~~-~~l~~~l~~ 124 (331)
+.+..|. .+.|+++++.. + ++.+.....++++|+++|.+.. .++. ++.+
T Consensus 170 i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~L~~ 248 (488)
T 2i5k_A 170 IRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-ILNH 248 (488)
T ss_dssp EEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-HHHH
T ss_pred EEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-HHHH
Confidence 7766555 67899998873 2 4555322223999999999765 4675 6688
Q ss_pred HhhcCCceEEE---ecCCC-CceEEEEcCCcCc--eeEeeecCCC--------CCCCeEEEEEEEEChhhHhhc-cc---
Q 020113 125 HRGRGGEASIM---VDEPS-KYGVVVMEETTGK--VEKFVEKPKN--------FVGNKINAGIYLLNPSVLDRI-EL--- 186 (331)
Q Consensus 125 ~~~~~~~~~i~---~~~~~-~~~~v~~d~~~~~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l-~~--- 186 (331)
|.++++++++. ..++. .||.+..++ |+ +.++.|.+.+ ..-...++|+|+|+.+.++.+ ..
T Consensus 249 ~~~~~a~~t~~v~~~~~p~~~yG~Iv~~d--G~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~l~~~~~ 326 (488)
T 2i5k_A 249 MIETGAEYIMELTDKTRADVKGGTLISYD--GQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNL 326 (488)
T ss_dssp HHHSCCSEEEEEEECCGGGSSSCEEEEET--TEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHHHHTTCC
T ss_pred HHhcCCcEEEEEEEecCCCCceeEEEEEC--CcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHHHhhccC
Confidence 88889888877 34554 489887653 44 4444444432 123588999999999887654 11
Q ss_pred CCC------------------Cccc---chHHHHHhcCcEEEEEe-CceEEecCCHHHHHHHHHHHHhhhccccCCcc-C
Q 020113 187 KPT------------------SIEK---EVFPEIAAENKLFAMVL-PGFWMDIGQPKDYITGLRLYLDFLQKNSSSKL-A 243 (331)
Q Consensus 187 ~~~------------------~~~~---~~l~~l~~~~~i~~~~~-~~~~~~i~t~~d~~~a~~~~l~~~~~~~~~~i-~ 243 (331)
... .+|. ++++.+ + ...++.+ ...|..+-+..+++.+...+ +.......+ .
T Consensus 327 ~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~--~-~~~~~~V~R~~F~PvKn~~~ll~~~~~~---~~~~~g~~~~~ 400 (488)
T 2i5k_A 327 EMEIIPNQKTITRDGHEINVLQLETACGAAIRHF--D-GAHGVVVPRSRFLPVKTCSDLLLVKSDL---FRLEHGSLKLD 400 (488)
T ss_dssp CCCCBCCEECCCC-----CEECCBCCGGGGGGGS--S-SCEEEEECGGGCCBCCSHHHHHHHTSTT---EEEETTEEEEC
T ss_pred CCcceecCccccCCCCCCceEEeeehhhhHHhhc--c-CceEEEecccccccccCCccHHHHHHHH---HHHhcCcEeec
Confidence 000 0111 222222 1 2223333 22466777766554443321 111111111 0
Q ss_pred -CCceEecceEEcCCcEECCCcE----ECCCC-CceEe--CCEEcCCCEECCCcEEccceEEC----CCcEECcccEEcC
Q 020113 244 -TGSNIIGNVLVHEGAKIGDGCL----IGPDK-HACIS--SSIIGWHSTVGRWARVENMTILG----EDVHVADEVYSNG 311 (331)
Q Consensus 244 -~~~~i~~~~~i~~~~~i~~~~~----I~~~~-~~~i~--~s~i~~~~~ig~~~~i~~~~~i~----~~~~i~~~~~i~~ 311 (331)
..+.+.|-+..+++ ....-. +. . -+.++ .-+|..+++.|.++++.+.++|- +...|-+|+++.|
T Consensus 401 ~~~~e~~P~v~~~~~--~~~~~~~~~rf~--~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n 476 (488)
T 2i5k_A 401 PSRFGPNPLIKLGSH--FKKVSGFNARIP--HIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILEN 476 (488)
T ss_dssp TTCCSSCCEEEECGG--GSSHHHHHHHCS--SCCBCTTEEEEEEESSEEECTTCEEEEEEEEECCTTCCEEECTTCEEEE
T ss_pred CCcCCCCCeEEECCc--ccchhhHHhhcC--CCccccccceEEEEeeeEEcCCcEEEEEEEEEcCCCCeEEeCCCCEEec
Confidence 01223444444432 101000 10 0 11221 23466777888888887756664 3468999999999
Q ss_pred cEEccCeEEc
Q 020113 312 AVVLPHKEIK 321 (331)
Q Consensus 312 ~~v~~~~~i~ 321 (331)
..|.++..|-
T Consensus 477 ~~~~~~~~~~ 486 (488)
T 2i5k_A 477 VVVTGNLQIL 486 (488)
T ss_dssp EEEEEEEEEE
T ss_pred ceeecccccc
Confidence 8888777653
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-19 Score=145.75 Aligned_cols=182 Identities=15% Similarity=0.228 Sum_probs=122.9
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.+||||||.|+||+ .||+|+|++|+|||+|+++.+.++++++++|++++..+.+.+++.+ +++++... +.
T Consensus 7 ~~iIlA~G~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~~ 76 (197)
T 2wee_A 7 TGVVLAAGRSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL----DGTDVVVV-ED 76 (197)
T ss_dssp EEEEEECCCCTTTS-----SCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC----TTSEEEEC-C-
T ss_pred EEEEECCCCcccCC-----CCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc----CCCEEEEC-CC
Confidence 68999999999995 4999999999999999999999999999999998776666555443 34555332 33
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEeee
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
...|++++++.+++.+... .+.+++++||+. ....++++++. +.++.+++... + ++.
T Consensus 77 ~~~g~~~~i~~al~~~~~~-~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~----------~---g~~----- 135 (197)
T 2wee_A 77 VERGCAASLRVALARVHPR-ATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY----------A---DGV----- 135 (197)
T ss_dssp ---CCHHHHHHHHTTSCTT-EEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE----------T---TEE-----
T ss_pred cccCHHHHHHHHHHHhccc-CCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec----------C---CCc-----
Confidence 4568999999999988421 128999999993 35568888887 33332221111 1 210
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhc--CcEEEEEe-CceEEecCCHHHHHHHHH
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAE--NKLFAMVL-PGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~--~~i~~~~~-~~~~~~i~t~~d~~~a~~ 228 (331)
..-++|+++.+..+.... ....+ ..+++. .++..++. .+.|.|++||+||..+..
T Consensus 136 -----------~~P~~~~~~~l~~l~~~~--~~~~~-~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~ 193 (197)
T 2wee_A 136 -----------GHPFWFSRTVFGELARLH--GDKGV-WKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLE 193 (197)
T ss_dssp -----------EEEEEEEGGGHHHHHTCC--STTHH-HHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred -----------CCCEEECHHHHHHHHhCC--CChhH-HHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHH
Confidence 111478888877664211 12222 233333 35766766 458999999999988754
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=146.97 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=130.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHH-HHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVM-LNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i-~~~~~~~~~~~~~~v~~~ 78 (331)
|.|||||||.|+||+. ..||+|+|++|+|||+|+++.+.+++ +++++|++++..... ++++. ++..+...
T Consensus 14 ~~aiILAaG~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~~~~~~~~ 85 (234)
T 1vpa_A 14 NVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-----HEKVLGIV 85 (234)
T ss_dssp EEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-----CTTEEEEE
T ss_pred CeEEEEcCcchhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-----cCCceEEe
Confidence 5799999999999984 56999999999999999999999998 899999998765432 32221 12222221
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCcee
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~ 155 (331)
....+..++++.++..+.....+.+++++||+ +....+..+++.+.+.++..++. +.+. +..++++ | +
T Consensus 86 --~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~i~~~~~~~~----~~~~~~~-g-v- 156 (234)
T 1vpa_A 86 --EGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDA----LVRVEND-R-I- 156 (234)
T ss_dssp --ECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSE----EEEEETT-E-E-
T ss_pred --CCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEecCCc----EEEECCC-C-c-
Confidence 11223667888888887431112678888998 34556899998887654322222 2221 2223444 5 5
Q ss_pred EeeecCCCCCCCeE-EEEEEEEChhhHhhcccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKI-NAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 156 ~~~ek~~~~~~~~~-~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.+.++ ..+. .-..++|+...+..+...... ..+....+...+ ++..+..++.|.|||||+||..++..+.
T Consensus 157 ~~~~r-----~~~~~~~~p~~f~~~~l~~~~~~~~~-~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 228 (234)
T 1vpa_A 157 EYIPR-----KGVYRILTPQAFSYEILKKAHENGGE-WADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 228 (234)
T ss_dssp EEECC-----TTEEEEEEEEEEEHHHHHHHHTTCCC-CSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred ccCCh-----hHeeeecCCccccHHHHHHHHHhcCC-CCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHh
Confidence 55443 1222 223457888766554211111 122223333333 5666666677999999999999977543
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=142.70 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=132.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.+||||||.|+||+. ..||+|+|++|+|||+|+++.+.+++ +++|+|++++..+.+.+ +..++. ..+.++.
T Consensus 8 ~~~iIlA~G~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~---~~v~~~~ 80 (236)
T 1i52_A 8 VCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLANH---PQITVVD 80 (236)
T ss_dssp EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGGC---TTEEEEE
T ss_pred eeEEEECCcCccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcCC---CCEEEEC
Confidence 4689999999999973 56999999999999999999999987 89999999875444443 332210 1233333
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
. ..|..+++..++..+... +.+++++||.. ....+..+++.+.+.++.+.+++...... ...+++.+++...
T Consensus 81 ~--~~g~~~~i~~al~~~~~~--~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~ 154 (236)
T 1i52_A 81 G--GDERADSVLAGLKAAGDA--QWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTM--KRAEPGKNAIAHT 154 (236)
T ss_dssp C--CSSHHHHHHHHHHTSTTC--SEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCE--EEECTTSSSEEEE
T ss_pred C--CCCHHHHHHHHHHhcCCC--CEEEEEcCccccCCHHHHHHHHHHHHhcCCeEEEEEeccccE--EEEcCCCCceeec
Confidence 2 247888999998888421 28999999983 34458889988766543332222111111 1123221344332
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhc-cc---CCCCcccchHHHHHh-cCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRI-EL---KPTSIEKEVFPEIAA-ENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.+ ...-+..-+.++|+.+.+..+ .. ....+ .+....+.. ..++..++.++.|.||+||+||..+...+.
T Consensus 155 ~~----~~~i~~~~~p~~f~~~~l~~~~~~~~~~g~~~-td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~ 228 (236)
T 1i52_A 155 VD----RNGLWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLT 228 (236)
T ss_dssp EC----CTTCEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHC
T ss_pred cC----hHhheeeeCCceecHHHHHHHHHHHHhcCCCc-ccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHH
Confidence 21 112233336678887655332 11 11111 112222222 245777777778999999999999977653
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=135.83 Aligned_cols=207 Identities=16% Similarity=0.165 Sum_probs=135.9
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.|||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++|+++++++. +.+++.+.. ++. ++.
T Consensus 9 ~aIIlAaG~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-----~v~--~v~ 78 (231)
T 3q80_A 9 VAIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-----RAM--IVA 78 (231)
T ss_dssp EEEEECCCCCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-----GCE--EEE
T ss_pred EEEEECCCCCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-----CeE--EEc
Confidence 589999999999975 67999999999999999999999985 899999998765 444444432 233 232
Q ss_pred CCcccCChHHHHHHHhhccCC-CCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCc
Q 020113 80 ETEPLGTAGPLALARDKLIDD-SGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~-~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~ 153 (331)
...+..++++.++..+... ..+.++++.||. +....++.+++.+.+. .++.+. +.++-.+ .+++ +.
T Consensus 79 --gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~-~~~~i~~~p~~dt~~~----~~~~-g~ 150 (231)
T 3q80_A 79 --GGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDG-YAAVVPVLPLSDTIKA----VDAN-GV 150 (231)
T ss_dssp --CCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTT-CSEEEEEECCSSCEEE----ECTT-SB
T ss_pred --CCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhc-CCeEEEEEeccCCEEE----EcCC-Cc
Confidence 1223468999999988642 123899999999 3455689999988762 233333 4443222 3555 67
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhc-c---cC-CCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-E---LK-PTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~---~~-~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
+....++.. -..+.+ .|.|+.+.+... + .+ ......|....+...| ++..++-+..++.++||+|+..+.
T Consensus 151 v~~~~~r~~---l~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae 226 (231)
T 3q80_A 151 VLGTPERAG---LRAVQT-PQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQ 226 (231)
T ss_dssp EEECCCGGG---EEEECS-CEEEEHHHHHHHHHHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHH
T ss_pred EEEecchhh---eEEEcC-CcEEEHHHHHHHHHHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHH
Confidence 766654321 112233 489998877554 1 11 1111234445555444 476666555688999999999887
Q ss_pred HHH
Q 020113 228 RLY 230 (331)
Q Consensus 228 ~~~ 230 (331)
..+
T Consensus 227 ~~l 229 (231)
T 3q80_A 227 AIV 229 (231)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=145.15 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=119.7
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.|||||||.|+||++ . ||+|+|++|+|||+|+++. ..++++|+|++++. +.+ +.. .++ .++..
T Consensus 27 ~aiILAgG~s~Rm~~---~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~~---~~~-~~~----~~v--~~~~~- 89 (236)
T 2px7_A 27 SVLIPAAGNGLRLGR---G-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPPG---AEP-PKG----LGA--VFLEG- 89 (236)
T ss_dssp EEEEECCC----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECTT---CCC-CTT----CSC--EEEEC-
T ss_pred EEEEEcCCCCccCCC---C-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCHH---HHH-hhc----CCc--EEEeC-
Confidence 399999999999985 4 9999999999999999999 67799999999851 111 211 233 33322
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEee
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
..|...++..++..+.. +.+++++||+ + ....+..+++.+.+.++..++. ..++.. + .+ + |++..+.
T Consensus 90 -~~~~~~~i~~al~~~~~---~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~--~--~~-~-G~v~~~~ 159 (236)
T 2px7_A 90 -GATRQASVARLLEAASL---PLVLVHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLM--A--PE-G-EAYGRVV 159 (236)
T ss_dssp -CSSHHHHHHHHHHHCCS---SEEEECCTTCCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEE--E--EC-S-SSCEEEE
T ss_pred -CCchHHHHHHHHHHcCC---CeEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEecCCcEE--E--ec-C-CeEEecC
Confidence 33678899999888852 2799999998 3 3456889998887654322222 222211 1 23 4 6776665
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhc-cc---CCCCcccchHHHHHhc-CcEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRI-EL---KPTSIEKEVFPEIAAE-NKLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
++.. -......++|+++.+..+ .. ....+ .+....+... .++..+..++.|.|++||+||..+...+
T Consensus 160 ~~~~----~~~~~~~~~f~~~~l~~~~~~~~~~g~~~-~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 231 (236)
T 2px7_A 160 PREA----FRLVQTPQGFFTALLREAHAYARRKGLEA-SDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALA 231 (236)
T ss_dssp CGGG----CEEECSCEEEEHHHHHHHHHHHHHHTCCC-SSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred ChHh----hccccCCeEEcHHHHHHHHHHHHhcCCCc-hhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHH
Confidence 5322 111113567888765432 11 01111 1222223222 3577788777899999999999987654
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=137.33 Aligned_cols=181 Identities=19% Similarity=0.240 Sum_probs=112.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||++ ||+|+|++|+|||+|+++.+..+ ++++++++..+.+.+++. .++ +. ..+
T Consensus 3 ~~~iIlAgG~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~-----~~~-~v-~~~ 67 (197)
T 3d5n_A 3 IGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM-----DQI-VI-YNP 67 (197)
T ss_dssp EEEEEECSCCTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT-----TSC-EE-ECT
T ss_pred eEEEEECCcCcccCCC-----CeeeCEeCceEHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc-----CCE-EE-ECC
Confidence 3699999999999975 89999999999999999999887 788888876544443332 244 32 223
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
....|++++++.+++.+... +.+++++||+ + ....++.+++.+ +.+++.++... + ++
T Consensus 68 ~~~~G~~~si~~al~~~~~~--~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~----------~---g~----- 126 (197)
T 3d5n_A 68 FWNEGISTSLKLGLRFFKDY--DAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH----------K---GE----- 126 (197)
T ss_dssp TGGGCHHHHHHHHHHHTTTS--SEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE----------T---TE-----
T ss_pred CCCCCHHHHHHHHHHhhccC--CcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe----------C---Cc-----
Confidence 33468999999999988642 2899999999 3 344588888876 43333222111 1 11
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcC-cEEEEEeC--ceEEecCCHHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAEN-KLFAMVLP--GFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~i~~~~~~--~~~~~i~t~~d~~~a~~~~ 230 (331)
+..+ .+|+++.+..+..- ....++...+.+.+ ++..++.+ +.|.|++||+||..+...+
T Consensus 127 --~~~P---------~~~~~~~l~~l~~l--~g~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~ 188 (197)
T 3d5n_A 127 --RGNP---------VLISKSLFNEIEKL--RGDVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFH 188 (197)
T ss_dssp --ECSC---------EEEEHHHHHHHHHC--CTTCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC----------
T ss_pred --ccCC---------EEECHHHHHHHHcc--CCCccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhh
Confidence 1112 37888877765311 12233333333322 45556654 4689999999998876543
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=144.94 Aligned_cols=180 Identities=20% Similarity=0.254 Sum_probs=134.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHH--------cC----CCEEEEEeccChHHHHHHHH
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKA--------VG----VTEVVLAINYQPEVMLNFLK 65 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~--------~g----i~~i~iv~~~~~~~i~~~~~ 65 (331)
|.+||||||.|+||+. ..||+|+|+ .|+|+|+++++++.+ .| +..+++.+.+..+.++++++
T Consensus 103 vavViLAGG~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~ 179 (505)
T 1jv1_A 103 VAVLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFT 179 (505)
T ss_dssp EEEEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHH
T ss_pred eEEEEEcCCccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHH
Confidence 5689999999999975 789999999 799999999999877 36 78888888888889999998
Q ss_pred HhhhccCe---EEEEeeC---------------------CcccCChHHHHHHHh-----hccCCCCCcEEEEeCCee-cc
Q 020113 66 EFEKKLEI---KITCSQE---------------------TEPLGTAGPLALARD-----KLIDDSGEPFFVLNSDVI-SE 115 (331)
Q Consensus 66 ~~~~~~~~---~v~~~~~---------------------~~~~G~~~al~~~~~-----~~~~~~~~~~lv~~~D~i-~~ 115 (331)
+ .+.+++ .+.+..| ..|.|+++.+..... .+.....++|+|.++|.+ ..
T Consensus 180 ~-~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~ 258 (505)
T 1jv1_A 180 K-HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVK 258 (505)
T ss_dssp H-TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCC
T ss_pred h-hhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccc
Confidence 7 334454 2544332 357888887765432 332221239999999995 76
Q ss_pred ccHHHHHHHHhhcCCceEEE----ecCCCCceEEEEcCCcCceeEeeecCCC----------CCCCeEEEEEEEEChhhH
Q 020113 116 YPLKQMIEFHRGRGGEASIM----VDEPSKYGVVVMEETTGKVEKFVEKPKN----------FVGNKINAGIYLLNPSVL 181 (331)
Q Consensus 116 ~~l~~~l~~~~~~~~~~~i~----~~~~~~~~~v~~d~~~~~v~~~~ek~~~----------~~~~~~~~Giy~~~~~~l 181 (331)
.....++..|.++++++++. +.++..+|++..++...++.++.|+|.. ...++.++|+|+|+.+++
T Consensus 259 ~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~L 338 (505)
T 1jv1_A 259 VADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFL 338 (505)
T ss_dssp TTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHH
T ss_pred cchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEECCeEEEEEEeeCCHHHhhhcccccccccceeeEEEEEecHHHH
Confidence 77778999999999998876 3456789988875421345666666542 123689999999999987
Q ss_pred hhc
Q 020113 182 DRI 184 (331)
Q Consensus 182 ~~l 184 (331)
+.+
T Consensus 339 ~~i 341 (505)
T 1jv1_A 339 RDV 341 (505)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-18 Score=155.91 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=102.4
Q ss_pred cEEEEeCCeeccc--cHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCc-CceeEeeecCCCCCC-CeEEEEEEEECh
Q 020113 104 PFFVLNSDVISEY--PLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETT-GKVEKFVEKPKNFVG-NKINAGIYLLNP 178 (331)
Q Consensus 104 ~~lv~~~D~i~~~--~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~-~~v~~~~ek~~~~~~-~~~~~Giy~~~~ 178 (331)
.=|+-.+|.++.. ++.++++.|. +++. .+++..+++..+++.. +++ .|.|||+.+.. .+.++|+|+|++
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI~~~ 85 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQGNGATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAIIISR 85 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT-----CEEESCTTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEEEEH
T ss_pred cCcccCccccccCcCcHHHHHHhhC-----CEEECCCcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEEeCh
Confidence 3466788999886 8999999885 4666 5677788888887531 566 99999975322 467899999999
Q ss_pred hhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEec--CCHHHHHHHHHHHHhhhccccCCccCCCceEecceEEcC
Q 020113 179 SVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDI--GQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVLVHE 256 (331)
Q Consensus 179 ~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i--~t~~d~~~a~~~~l~~~~~~~~~~i~~~~~i~~~~~i~~ 256 (331)
++++.+.. + .+.+| ++.+++.++|....+|++. .++... +.......+.+.+++++.|+++++|++
T Consensus 86 ~~l~~~~~----~-~~~~p-l~~~~~~~a~~~~~~~~~~~i~~~~~~------i~~~~~i~~~a~Ig~~~~I~~~~~I~~ 153 (374)
T 2iu8_A 86 TQFQKYRD----L-NKNFL-ITSESPSLVFQKCLELFITPVDSGFPG------IHPTAVIHPTAIIEDHVCIEPYAVVCQ 153 (374)
T ss_dssp HHHHTSTT----S-CSCEE-EESSCHHHHHHHHHTTTSCCCCCSCCS------BCTTCEECTTCEECTTCEECTTCEECT
T ss_pred hHhhhccc----c-ccceE-EEeCCHHHHHHHHHHHhccccccccCc------cCCCCEECCCcEECCCCEECCCCEECC
Confidence 98753321 1 23333 3333332222222233332 111000 000000112334555555556666666
Q ss_pred CcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 257 GAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
++.||++|.|+ .++.| .+++||++|.|++++.|..+++||++|.|+++++|
T Consensus 154 ~~~IG~~~~I~--~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I 205 (374)
T 2iu8_A 154 HAHVGSACHIG--SGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVI 205 (374)
T ss_dssp TCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEE
T ss_pred CCEECCCCEEC--CCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEE
Confidence 66666666666 55666 35666666666666666555667777776666665
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=132.88 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=81.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.+||||||.|+||+. .||+|+|++|+|||+|+++.+.. ++++|+|++++..+.+ .+ .++++......
T Consensus 8 ~~iILAgG~s~Rmg~----~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~~----~~~~~v~~~~~ 74 (201)
T 1e5k_A 8 TGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQEIY----QA----SGLKVIEDSLA 74 (201)
T ss_dssp EEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSHHHH----HT----TSCCEECCCTT
T ss_pred eEEEEcCCCCCcCCC----CCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcHHHH----hh----cCCeEEecCCC
Confidence 689999999999972 59999999999999999999985 4899999998765322 22 24444221112
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHH
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEF 124 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~ 124 (331)
...|++.++..+++.+..+ .+++++||+ +....+..+++.
T Consensus 75 ~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 75 DYPGPLAGMLSVMQQEAGE---WFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp CCCSHHHHHHHHHHHCCSS---EEEEEETTCTTCCTTHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCC---cEEEEeCCcCcCCHHHHHHHHhh
Confidence 2268999999999988542 899999999 344557888875
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.9e-17 Score=133.77 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=110.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.+||||||.|+||+ .||+|+|++|+|||+|+++.+..+ +++++|++++... +++ . ++++.. .+.
T Consensus 16 ~~iILA~G~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~---~---~~~~v~-~~~ 79 (201)
T 2e8b_A 16 TCYVLAGGKSKRFG-----EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK---FSF---L---NAPVVL-DEF 79 (201)
T ss_dssp EEEEEEESSCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG---GGG---G---TCCEEE-CCC
T ss_pred eEEEECCCCCccCC-----CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH---hhc---C---CceEEe-cCC
Confidence 69999999999997 489999999999999999999998 8999999987653 111 1 333322 233
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHH-HHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQ-MIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~-~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
...|+++++..+++.+..+ .+++++||+.+ ...++. ++ + .++++ ..+ + ++
T Consensus 80 ~~~g~~~~i~~al~~~~~~---~~lv~~~D~P~i~~~~i~~~l~----~--~~~~v-----------~~~-~-g~----- 132 (201)
T 2e8b_A 80 EESASIIGLYTALKHAKEE---NVFVLSGDLPLMKKETVLYVLE----N--FKEPV-----------SVA-K-TE----- 132 (201)
T ss_dssp SSCCHHHHHHHHHHHCSSS---EEEEEETTCTTCCHHHHHHHHH----T--CCSSE-----------EEE-E-SS-----
T ss_pred CCCCcHHHHHHHHHHcCCC---CEEEEeCCcCcCCHHHHHHHHh----c--CCEEE-----------Eec-C-Cc-----
Confidence 4579999999999988532 89999999943 334666 65 1 11111 011 1 21
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhccc---CCCCcccchHHHHHhcCcEEEEEeC--ceEE--ecCCHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAAENKLFAMVLP--GFWM--DIGQPKDYITGLRL 229 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~~~l~~l~~~~~i~~~~~~--~~~~--~i~t~~d~~~a~~~ 229 (331)
.....|+| |++++++.+.. .......++++. .++..+.++ +.|. |+|||+||.++...
T Consensus 133 --------~~p~~giy-~~~~~~~~l~~~~~~g~~~~~~~l~~----~~~~~~~~~~~~~~~~~dintpedl~~~~~~ 197 (201)
T 2e8b_A 133 --------KLHTLVGV-YSKKLLEKIEERIKKGDYRIWALLKD----VGYNEVEIPEELRYTLLNMNTKEDLKRILAI 197 (201)
T ss_dssp --------SEEEEEEE-EEGGGHHHHHHHHHTTCCCHHHHHHH----HCCEEEECCGGGGGGGCCSCCC---------
T ss_pred --------eeeEEEEE-eChhHHHHHHHHHHcCCchHHHHHHH----CCeEEeccccccchhhcCCCCHHHHHHHHHH
Confidence 24578999 99998776632 111111233332 245556653 4689 99999999887654
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=127.39 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=116.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. ||+|++++|+|||+|+++.+..+ +++|++++ .+.+..+ ...++.++.. ..
T Consensus 1 m~aiILAgG~s~Rmg~-----~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~-~~~~~~~----~~~~~~~~v~-d~ 66 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIGM-----EKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRD-EKQAEKL----SSRYEAEFIW-DL 66 (208)
T ss_dssp CEEEEECCCCCTTTTS-----CGGGCEETTEEHHHHHHHHHTTS---EEEEECSS-HHHHHHH----HTTSCSCEEC-CT
T ss_pred CEEEEECCCchhhCCC-----CCcccEECCeeHHHHHHHHhcCC---CEEEEECC-HHHHHHH----HHhcCCeEEe-cC
Confidence 8999999999999973 89999999999999999999987 88888863 2333322 2223444432 22
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
....|...+++.++..+ .+ .+ +++||+. ....+..+++.+.+.+.++++.. + |+.
T Consensus 67 ~~~~G~~~si~~gl~~~-~~---~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~-------------~-g~~---- 123 (208)
T 3ngw_A 67 HKGVGSIAGIHAALRHF-GS---CV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK-------------H-DYP---- 123 (208)
T ss_dssp TCCCSHHHHHHHHHHHH-SS---EE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE-------------S-SSB----
T ss_pred CCCCChHHHHHHHHHHc-CC---CE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc-------------C-CCe----
Confidence 33457789999999988 32 67 9999993 34558889888765444432212 1 210
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeC---------ceEEecCCHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP---------GFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~---------~~~~~i~t~~d~~~a~~~ 229 (331)
.|- .-++++..+..+........+.+. .+++...+....++ +.|.++|||+||..+.+.
T Consensus 124 -~Pl----------~al~~~~~~~~l~~~l~~G~~~~~-~~l~~~~~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~~~~ 191 (208)
T 3ngw_A 124 -EPL----------LAYYAESAADELERAILQGIRKIL-VPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAEEI 191 (208)
T ss_dssp -CTT----------EEEECGGGHHHHHHHHHTTCCCTH-HHHHTSCEEEEEGGGGTTTCTTCGGGCCCCSHHHHHHHHHH
T ss_pred -eEE----------EEEEcHHHHHHHHHHHHcCCCCHH-HHHHhCCEEEecHHHhcccCcccceEEecCCHHHHHHHHHH
Confidence 010 134566666544211111122232 33444445555543 358999999999888766
Q ss_pred HHh
Q 020113 230 YLD 232 (331)
Q Consensus 230 ~l~ 232 (331)
+..
T Consensus 192 ~~~ 194 (208)
T 3ngw_A 192 CSK 194 (208)
T ss_dssp HHH
T ss_pred hcc
Confidence 543
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=135.56 Aligned_cols=192 Identities=16% Similarity=0.151 Sum_probs=120.8
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHH-cCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.+||||+|.|+||+. ..||+|+|++|+|||+|+++.+.+ .++++|+|+++ +.+.+++++. ++++ +
T Consensus 5 ~aIILAaG~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~------~v~~--v-- 70 (371)
T 1w55_A 5 SLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK------NYEF--I-- 70 (371)
T ss_dssp EEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS------SSEE--E--
T ss_pred EEEEECCCCCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC------CCEE--E--
Confidence 589999999999974 579999999999999999999998 57999999998 4443333221 1233 3
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
....|..++++.+++.+.. +.+++++||.. ....++++++.+.+.++...+. +.+...+.....+. ..+...
T Consensus 71 ~~g~g~~~sv~~aL~~l~~---d~vlv~~~D~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~vk~v~~t~~r--~~l~~~ 145 (371)
T 1w55_A 71 EGGDTRAESLKKALELIDS---EFVMVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFDNEALQR--EKIKLI 145 (371)
T ss_dssp ECCSSHHHHHHHHHTTCCS---SEEEEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEETTEEECG--GGCCEE
T ss_pred eCCCChHHHHHHHHHhcCC---CeEEEEeCCcccCCHHHHHHHHHHHHhcCCEEEEEEeecCeeeeeeecCc--cceeec
Confidence 2234677899999988753 28999999993 3456889998876553221122 22221110000011 111111
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhc-ccCCCCcccchHHHHHhc-CcEEEEEeCceEEecCCHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRI-ELKPTSIEKEVFPEIAAE-NKLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
..-+.|+.+.+..+ .... . ..+....+.+. .++..++.++.|.|++||+||..++
T Consensus 146 -------------~~P~~f~~~~l~~~~~~~~-~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 146 -------------QTPQISKTKLLKKALDQNL-E-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp -------------CSCEEEEHHHHHHHTSSCC-C-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred -------------CCcceecHHHHHHHHHhcc-c-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence 11256777766543 2221 1 12222333333 3577777777899999999998886
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=126.42 Aligned_cols=177 Identities=17% Similarity=0.166 Sum_probs=122.9
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC-CcchHHHHHHHHHHcC------CCEEEEEeccChHHHHHHHH-HhhhccCe
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAVG------VTEVVLAINYQPEVMLNFLK-EFEKKLEI 73 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~g------i~~i~iv~~~~~~~i~~~~~-~~~~~~~~ 73 (331)
.+|+||||.|+||+. ..||+|+|++ |+|+|++.++++.+.+ +..+++.+.+..+.+++|++ + .+.+++
T Consensus 77 avViLAGGlGTRLg~---~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~-~~~fGl 152 (505)
T 2oeg_A 77 VVLKLNGGLGTGMGL---CDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKAR-YPWLYQ 152 (505)
T ss_dssp EEEEEECCCCGGGTC---CSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHH-CHHHHT
T ss_pred eEEEEcCCcccccCC---CCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhh-hhccCC
Confidence 589999999999994 7899999999 9999999999999875 45556666676788999998 5 122232
Q ss_pred ---EEE-E---------------e-------eCCcccCChHHHHHH-----HhhccCCCCCcEEEEeCCeecc-ccHHHH
Q 020113 74 ---KIT-C---------------S-------QETEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISE-YPLKQM 121 (331)
Q Consensus 74 ---~v~-~---------------~-------~~~~~~G~~~al~~~-----~~~~~~~~~~~~lv~~~D~i~~-~~l~~~ 121 (331)
.+. + + ....|.|+++.+... ++.+.....++++|.++|.+.. .++ .+
T Consensus 153 ~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~-~l 231 (505)
T 2oeg_A 153 VFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK-RV 231 (505)
T ss_dssp TCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-HH
T ss_pred CccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-HH
Confidence 121 2 1 122466999887644 3443322223999999999874 456 89
Q ss_pred HHHHhhcCCceEEE---ecCC-CCceEEEEc------CCcCc---------eeEeeecCCC--------CCCCeEEEEEE
Q 020113 122 IEFHRGRGGEASIM---VDEP-SKYGVVVME------ETTGK---------VEKFVEKPKN--------FVGNKINAGIY 174 (331)
Q Consensus 122 l~~~~~~~~~~~i~---~~~~-~~~~~v~~d------~~~~~---------v~~~~ek~~~--------~~~~~~~~Giy 174 (331)
+.+|.++++++++. ..++ ..+|++..+ .+ |+ +.++.|-|.+ ..-.+.++...
T Consensus 232 lg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~~~~~~d-g~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn~ 310 (505)
T 2oeg_A 232 LAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKD-GQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNL 310 (505)
T ss_dssp HHHHHHHTCSEEEEEEECCTTCCSSEEEEEEEEEECCSS-SCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEEE
T ss_pred HHHHHhcCCcEEEEEEEecCCccceeEEEEecccccccC-CccccccCceeEEEeccCChhhhhcccCccccCeeEEEEE
Confidence 99999999998877 3444 578888773 33 56 3333333332 11235789999
Q ss_pred EEChhhHhhc
Q 020113 175 LLNPSVLDRI 184 (331)
Q Consensus 175 ~~~~~~l~~l 184 (331)
+|+-+.++.+
T Consensus 311 ~~~l~~l~~~ 320 (505)
T 2oeg_A 311 WIRLPVLLET 320 (505)
T ss_dssp EEEHHHHHHH
T ss_pred EEEHHHHHHH
Confidence 9998877654
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-14 Score=130.19 Aligned_cols=225 Identities=12% Similarity=0.154 Sum_probs=126.3
Q ss_pred cCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEe----CCeeccccHHHHHHHHhhc--CC---------ceEEE
Q 020113 71 LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN----SDVISEYPLKQMIEFHRGR--GG---------EASIM 135 (331)
Q Consensus 71 ~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~----~D~i~~~~l~~~l~~~~~~--~~---------~~~i~ 135 (331)
++..+++..+..+++++.+++.+-+.+. .++|+. +|.....++.+++..|.+. +. ..++-
T Consensus 111 ~g~~vt~~~~~~pL~~a~~i~~~d~~~~-----~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~ 185 (496)
T 3c8v_A 111 KGQHFVCDGKMIPLHDDEVITIKDSFLN-----KTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVD 185 (496)
T ss_dssp TTCEEEETTEEEECSSCCEEEEESCEEE-----SCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEE
T ss_pred cCCEEEEEecccchhHhhhHHhhhhcCC-----ceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceee
Confidence 4567777777778888887443333321 237777 5777666666666666542 21 22322
Q ss_pred ---ecCC--CCceEEEEcCCcCceeEeeecCCCC--CCCeEEEEEEEEChhhHhhccc--CCCCcccchHHHHHhcCcEE
Q 020113 136 ---VDEP--SKYGVVVMEETTGKVEKFVEKPKNF--VGNKINAGIYLLNPSVLDRIEL--KPTSIEKEVFPEIAAENKLF 206 (331)
Q Consensus 136 ---~~~~--~~~~~v~~d~~~~~v~~~~ek~~~~--~~~~~~~Giy~~~~~~l~~l~~--~~~~~~~~~l~~l~~~~~i~ 206 (331)
+.++ ..++.+. . +++....++|... .++.....+|.|.+..++.+.. ..... +..+..++.
T Consensus 186 L~~l~d~li~~~~~~~---~-g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~l~~~~~~n~-~g~~~Dll~----- 255 (496)
T 3c8v_A 186 LSTIHNSVVRYFSYVQ---T-GELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKYISQEAGSCP-TGVLMEFVE----- 255 (496)
T ss_dssp SCEEESCEECTTCEEE---S-SEEESCEECTTEEEEECTTSEEEEEECCHHHHTTTCBCCTTSCC-BSHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhhc---C-CceEEeeecCCceecccccccceEEEcCHHHHHHHHhhccCccc-cceeeehhc-----
Confidence 4455 4565552 2 5666666666421 1222345699999988876521 11110 111111111
Q ss_pred EEEeCceEEecCCHHHHHHHHHHHH----hhhc----------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCc
Q 020113 207 AMVLPGFWMDIGQPKDYITGLRLYL----DFLQ----------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHA 272 (331)
Q Consensus 207 ~~~~~~~~~~i~t~~d~~~a~~~~l----~~~~----------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~ 272 (331)
..++++.+...... .... -.....|++++.|++++.| .+++||++|.|+ ++|
T Consensus 256 -----------~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~--~~~ 321 (496)
T 3c8v_A 256 -----------VRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQ--ENC 321 (496)
T ss_dssp -----------TTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTTCEEC--TTC
T ss_pred -----------cchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCCCEEC--CCc
Confidence 12344433211100 0000 0112334555555555555 356667777777 778
Q ss_pred eEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc-----EEccCeEEccCcc
Q 020113 273 CISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA-----VVLPHKEIKSSIV 325 (331)
Q Consensus 273 ~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~-----~v~~~~~i~~~~~ 325 (331)
+|.+|+||++|.||.++.|.+ ++||++|.||+++.|.++ .|+++++|+.++.
T Consensus 322 ~I~~~vIG~~~~Ig~~a~I~g-v~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsv 378 (496)
T 3c8v_A 322 YIINSRLERNCVTAHGGKIIN-AHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTI 378 (496)
T ss_dssp EEEEEEEEESCEECTTCEEES-EEEEETCEECTTCEEECCSSSCEEECTTCEECTTCE
T ss_pred eEeceEeCCCCEECCCcEEcC-ceECCCcEECCCCEEeCCCCcceEECCCCEECCCCE
Confidence 888888888888888888877 888888888888887544 7777777766543
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=115.79 Aligned_cols=178 Identities=21% Similarity=0.214 Sum_probs=130.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHH-------------cCCCEEEEEeccChHHHHHHHH
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKA-------------VGVTEVVLAINYQPEVMLNFLK 65 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~-------------~gi~~i~iv~~~~~~~i~~~~~ 65 (331)
.+|+||||.|+||+. ..||+|+|+ .|+|+++++++.+.+ .++..+++.+.+..+.++++++
T Consensus 37 avvlLAGG~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~ 113 (405)
T 3oc9_A 37 ALITPAGGQGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFK 113 (405)
T ss_dssp EEEEECCSBCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHH
T ss_pred EEEEecCCCcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHH
Confidence 478999999999976 789999999 899999999998864 4688888888888899999998
Q ss_pred HhhhccCe---EEEEee---------------------CCcccCChHHHHHH-----HhhccCCCCCcEEEEeCCe-ecc
Q 020113 66 EFEKKLEI---KITCSQ---------------------ETEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDV-ISE 115 (331)
Q Consensus 66 ~~~~~~~~---~v~~~~---------------------~~~~~G~~~al~~~-----~~~~~~~~~~~~lv~~~D~-i~~ 115 (331)
+ .+.++. .+.+.. ...|.|+++.+... ++.+....-+++++.+.|. +..
T Consensus 114 ~-~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~ 192 (405)
T 3oc9_A 114 E-HQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCK 192 (405)
T ss_dssp H-TGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCC
T ss_pred h-CcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccc
Confidence 7 233343 233322 23467777755542 2223222223888999999 777
Q ss_pred ccHHHHHHHHhhcCCceEEE---ecCC-CCceEEEE-cCCcCceeEeeecCCCC---------CCCeEEEEEEEEChhhH
Q 020113 116 YPLKQMIEFHRGRGGEASIM---VDEP-SKYGVVVM-EETTGKVEKFVEKPKNF---------VGNKINAGIYLLNPSVL 181 (331)
Q Consensus 116 ~~l~~~l~~~~~~~~~~~i~---~~~~-~~~~~v~~-d~~~~~v~~~~ek~~~~---------~~~~~~~Giy~~~~~~l 181 (331)
.....++..|.++++++++. ..++ ...|.+.. |.. .+|.++.|.|.+. .-+..+.++++|+.+++
T Consensus 193 ~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~-~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~fs~~fL 271 (405)
T 3oc9_A 193 DVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQER-IKVVEYTELTDELNKQLSNGEFIYNCGHISINGYSTSFL 271 (405)
T ss_dssp SSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTE-EEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEEEEHHHH
T ss_pred cCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCe-eEEEEEeeCCHHHhhcCCCCceeeccceeEeeecCHHHH
Confidence 78889999999999998777 3344 67887775 433 4678887766541 13467899999999998
Q ss_pred hhc
Q 020113 182 DRI 184 (331)
Q Consensus 182 ~~l 184 (331)
+.+
T Consensus 272 ~~i 274 (405)
T 3oc9_A 272 EKA 274 (405)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=120.10 Aligned_cols=178 Identities=17% Similarity=0.220 Sum_probs=125.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHc--------C------CCEEEEEeccChHHHHHH
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV--------G------VTEVVLAINYQPEVMLNF 63 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~--------g------i~~i~iv~~~~~~~i~~~ 63 (331)
|.+|+||||.|+||+. ..||+|+|++ |+|+|++.++++.+. | +..+++.+.+..+.++++
T Consensus 104 vavvlLaGG~GTRLg~---~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~ 180 (486)
T 2yqc_A 104 VAVLLMAGGQGTRLGS---SAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESF 180 (486)
T ss_dssp EEEEEEEESBCGGGTC---SSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHH
T ss_pred eEEEEEcCCccccCCC---CCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHH
Confidence 4689999999999964 7899999999 999999999999986 6 888888888888999999
Q ss_pred HHHhhhccCeE---EEEee----------------------CCcccCChHHHHHHH-----hhccCCCCCcEEEEeCCee
Q 020113 64 LKEFEKKLEIK---ITCSQ----------------------ETEPLGTAGPLALAR-----DKLIDDSGEPFFVLNSDVI 113 (331)
Q Consensus 64 ~~~~~~~~~~~---v~~~~----------------------~~~~~G~~~al~~~~-----~~~~~~~~~~~lv~~~D~i 113 (331)
+++ .+.++.+ +.+.. ...|.|+++.+.... +.+....-+++.+.+.|.+
T Consensus 181 ~~~-~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~ 259 (486)
T 2yqc_A 181 FIE-NNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNC 259 (486)
T ss_dssp HHH-TGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBT
T ss_pred Hhh-ccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCc
Confidence 987 2233331 22111 114678888664432 2232112227888899985
Q ss_pred cc--ccHHHHHHHHhhcCCceEEE-e--cCC-CCceEEEEc--CCcCceeEeeecCCC------C------CCCeEEEEE
Q 020113 114 SE--YPLKQMIEFHRGRGGEASIM-V--DEP-SKYGVVVME--ETTGKVEKFVEKPKN------F------VGNKINAGI 173 (331)
Q Consensus 114 ~~--~~l~~~l~~~~~~~~~~~i~-~--~~~-~~~~~v~~d--~~~~~v~~~~ek~~~------~------~~~~~~~Gi 173 (331)
.- .| ..++..|.++++++++. + .++ ...|.+... +...++.++.|+|.. + .....+++.
T Consensus 260 l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~ 338 (486)
T 2yqc_A 260 LVKVAD-PIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVN 338 (486)
T ss_dssp TCCTTC-HHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEE
T ss_pred eeeccC-HHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccceeEEE
Confidence 43 33 45788888889988776 2 233 677877754 211347788787642 1 236889999
Q ss_pred EEEChhhHhh
Q 020113 174 YLLNPSVLDR 183 (331)
Q Consensus 174 y~~~~~~l~~ 183 (331)
|+|+.++++.
T Consensus 339 ~~~~l~~L~~ 348 (486)
T 2yqc_A 339 HYYSVEFLNK 348 (486)
T ss_dssp EEEEHHHHHH
T ss_pred EEEeHHHHHH
Confidence 9999998876
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.9e-14 Score=119.10 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=57.4
Q ss_pred cEEEEEeCce----EEecCCHHHHHHHHHHHHhhhccc---------------cCCccCCCceEecceEEcCCcEE----
Q 020113 204 KLFAMVLPGF----WMDIGQPKDYITGLRLYLDFLQKN---------------SSSKLATGSNIIGNVLVHEGAKI---- 260 (331)
Q Consensus 204 ~i~~~~~~~~----~~~i~t~~d~~~a~~~~l~~~~~~---------------~~~~i~~~~~i~~~~~i~~~~~i---- 260 (331)
+++++...++ |.|+++ |+.+++.++...... ..+.+++++.|.+++.|+++|+|
T Consensus 40 ~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s 116 (240)
T 3r8y_A 40 QAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNA 116 (240)
T ss_dssp EEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEECTTC
T ss_pred eEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEECCCC
Confidence 3444444444 766666 778887776543211 11233344333333333333333
Q ss_pred --CCCcEECCCCCceEe-------CCEEcCCCEECCCcEEccc--------eEECCCcEECcccEE-cCcEEccCeEEcc
Q 020113 261 --GDGCLIGPDKHACIS-------SSIIGWHSTVGRWARVENM--------TILGEDVHVADEVYS-NGAVVLPHKEIKS 322 (331)
Q Consensus 261 --~~~~~I~~~~~~~i~-------~s~i~~~~~ig~~~~i~~~--------~~i~~~~~i~~~~~i-~~~~v~~~~~i~~ 322 (331)
+.+|+|| ++|.|. +++||++|.||+++.+.+. ++|+++|.||.+++| .++.|+++++|++
T Consensus 117 ~I~~~~~IG--~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~ 194 (240)
T 3r8y_A 117 TINIGAVIG--EGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAA 194 (240)
T ss_dssp EECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred EECCCCEEC--CCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECC
Confidence 2333333 334443 3444444444444444331 555677777777776 5566666666555
Q ss_pred Cc
Q 020113 323 SI 324 (331)
Q Consensus 323 ~~ 324 (331)
+.
T Consensus 195 gs 196 (240)
T 3r8y_A 195 GA 196 (240)
T ss_dssp TC
T ss_pred CC
Confidence 44
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=100.86 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=57.1
Q ss_pred ccC--CCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEcc
Q 020113 241 KLA--TGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLP 316 (331)
Q Consensus 241 ~i~--~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~ 316 (331)
.++ +++.|.++++|+.++.||++|.|+ .++.|. ++.||++|.|++++.|.++++||++|.||.++.+ .++.|++
T Consensus 89 ~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~--~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 166 (194)
T 3bfp_A 89 IVEENAGILIMPYVVINAKAKIEKGVILN--TSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLAD 166 (194)
T ss_dssp EECTTSCCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred eeCCCCCcEEcCCCEECCCCEECCCCEEC--CCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECC
Confidence 455 666666666666666777777777 667775 6888888888888888888888888888888877 3455555
Q ss_pred CeEEccC
Q 020113 317 HKEIKSS 323 (331)
Q Consensus 317 ~~~i~~~ 323 (331)
+++|+++
T Consensus 167 ~~~Igag 173 (194)
T 3bfp_A 167 DSILGGG 173 (194)
T ss_dssp TCEECTT
T ss_pred CCEECCC
Confidence 5555443
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=102.93 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=63.7
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPH 317 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~ 317 (331)
..+++++.|+++++|++++.||++|.|+ .+++|. +++||++|.|++++.|.++++||++|.||.+++|. ++.|+++
T Consensus 112 v~IG~g~~I~~~~~i~~~~~IG~~~~I~--~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~ 189 (220)
T 4ea9_A 112 VRLGEGVAVMAGVAINADSWIGDLAIIN--TGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGAD 189 (220)
T ss_dssp CEECSSCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEC--CCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCC
Confidence 4567777777777777788888888887 778885 68888888888888888888888888888888873 5666666
Q ss_pred eEEccCc
Q 020113 318 KEIKSSI 324 (331)
Q Consensus 318 ~~i~~~~ 324 (331)
++|+++.
T Consensus 190 ~~igags 196 (220)
T 4ea9_A 190 TIVGAGG 196 (220)
T ss_dssp CEECTTC
T ss_pred CEECCCC
Confidence 6665543
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=100.53 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEcc
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKS 322 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~ 322 (331)
+++||++|.||.++.|.+ ++||++|.||.++.|. ++.|+++++|++
T Consensus 95 ~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~ 141 (191)
T 3ixc_A 95 DTVIGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMDRAVMEEGSMLAA 141 (191)
T ss_dssp CEEECTTCEECTTCEECS-CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CeEECCCCEECCCCEEEC-CEECCCCEECCCCEEeCCeEECCCCEECC
Confidence 455555555555555555 5555555555555553 344444444443
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=102.22 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=61.9
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe----CCEEcCCCEECCCcEE------------------------
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS----SSIIGWHSTVGRWARV------------------------ 291 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~----~s~i~~~~~ig~~~~i------------------------ 291 (331)
..|++++.|+++++|+.++.||++|.|+ .++.|. +++||++|.||++|.|
T Consensus 53 v~IG~~~~I~~~~~I~~~v~IG~~~~I~--~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~ 130 (205)
T 3vbi_A 53 ISIGNNVRIDDFCILSGKVTIGSYSHIA--AYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNV 130 (205)
T ss_dssp EEECSSEEECTTCEEEEEEEECSSEEEC--TTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCC
T ss_pred eEECCCCEECCCCEEccceEECCCCEEC--CCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCccccccccee
Confidence 4567777777777777778888888888 778882 4889999999999988
Q ss_pred -ccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 292 -ENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 292 -~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
.+.++||++|.||.++.|. ++.|+++++|+++.
T Consensus 131 ~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gs 165 (205)
T 3vbi_A 131 KTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMS 165 (205)
T ss_dssp EECCEEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred ccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCC
Confidence 3448888888888888774 55555555555443
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=98.37 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=38.6
Q ss_pred cEECCCcEECCCCCceEe-----CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 258 AKIGDGCLIGPDKHACIS-----SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~-----~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
+.||++|.|+ +++.|. +++||++|.|++++.|.+ ++||++|.||.++.|. ++.|++++.|+++.
T Consensus 52 v~IG~~~~I~--~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s 121 (173)
T 1xhd_A 52 TIIGDRVNVQ--DQCTLHQSPQYPLILEDDVTVGHQVILHS-CHIKKDALIGMGSIILDGAEIGEGAFIGAGS 121 (173)
T ss_dssp EEECTTCEEC--TTCEEECCTTCCEEECTTCEECTTCEEES-CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEECCCCEEC--CCCEEEeCCCCCeEECCCCEECCCCEEeC-CEECCCCEEcCCCEEcCCCEECCCCEECCCC
Confidence 4455555555 556665 566666666666666666 6666666666666653 45555555555443
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=100.21 Aligned_cols=80 Identities=24% Similarity=0.267 Sum_probs=45.9
Q ss_pred cCCCceEecceEEcCCc---EECCCcEECCCCCceE------------eCCEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 242 LATGSNIIGNVLVHEGA---KIGDGCLIGPDKHACI------------SSSIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~---~i~~~~~I~~~~~~~i------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
|++++.|+++++|..++ .||++|.|+ +++.| .+++||++|.||+++.|.+ ++||++|.||.+
T Consensus 36 IG~~~~I~~~~~i~~~~~~i~IG~~~~I~--~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~ 112 (187)
T 3r3r_A 36 LADDVGIWPLVVIRGDVNYVAIGARTNIQ--DGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMG 112 (187)
T ss_dssp ECTTCEECTTCEEEEEEEEEEECTTCEEC--TTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEES-CEECSSEEECTT
T ss_pred ECCCCEECCCcEEEcCCccEEECCCCEEC--CCCEEecCCccccCCCCCCeEECCCCEECCCCEEeC-cEECCCCEECCC
Confidence 34444444444443322 555555555 55666 4566677777777776666 677777777776
Q ss_pred cEE-cCcEEccCeEEccCc
Q 020113 307 VYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 307 ~~i-~~~~v~~~~~i~~~~ 324 (331)
++| .++.|+++++|+++.
T Consensus 113 ~~I~~~~~Ig~~~~Ig~~s 131 (187)
T 3r3r_A 113 SIVLDGAIIEDDVMIGAGS 131 (187)
T ss_dssp CEECTTCEECSSEEECTTC
T ss_pred CEECCCCEECCCCEECCCC
Confidence 666 345555555555443
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-10 Score=94.84 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=55.8
Q ss_pred ccCCCceEecceEE--cCCcEECCCcEECCCCCceEeC---CEEcCCCEECCCcEE------------------ccceEE
Q 020113 241 KLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACISS---SIIGWHSTVGRWARV------------------ENMTIL 297 (331)
Q Consensus 241 ~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~~---s~i~~~~~ig~~~~i------------------~~~~~i 297 (331)
.+++++.|.+++.+ |.++.||+++.|+ .++.|.+ ..||++|.||++|.| ...++|
T Consensus 58 ~ig~~~~I~~~~~~~~g~~~~IG~~~~i~--~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~I 135 (188)
T 3srt_A 58 SVGKQINVEQNIRCDYGYNIHVGENFFAN--YDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKI 135 (188)
T ss_dssp BCCSCEEECSCEEESSSTTEEECTTEEEC--TTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEE
T ss_pred hcCCCCEEcCCEEEEeCCCeEECCccccc--CceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEE
Confidence 57777888777776 4577788888777 6677753 267888888888777 233777
Q ss_pred CCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 298 GEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 298 ~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
|++|.||.+++|. ++.|+++++|+++.
T Consensus 136 G~~v~IG~~~~I~~gv~IG~~~vIgags 163 (188)
T 3srt_A 136 GDNVWIGGGVIITPGITIGDNVVIGAGS 163 (188)
T ss_dssp CSSCEECTTCEECTTCEECSSEEECTTC
T ss_pred CCCcEEcCCCEECCCcEECCCCEECCCC
Confidence 7777777777763 55555555555443
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-11 Score=105.01 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=36.8
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
+++++.|+++++|++++.||++|.|+ .++.| .++.||++|.|+++++|.++++||++|.|++++.|
T Consensus 112 ig~~~~I~~~~~I~~~v~IG~~~~I~--~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 178 (341)
T 3eh0_A 112 LGNNVSIGANAVIESGVELGDNVIIG--AGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV 178 (341)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEE
T ss_pred ECCCCEECCCcEECCCcEECCCcEEC--CCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEE
Confidence 44444444555555555555555555 44555 35556666666666666444666666666666655
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-10 Score=94.94 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=46.9
Q ss_pred ccCCCceEecceEE--cCCcEECCCcEECCCCCceEeC---CEEcCCCEECCCcEEc------------------cceEE
Q 020113 241 KLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACISS---SIIGWHSTVGRWARVE------------------NMTIL 297 (331)
Q Consensus 241 ~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~~---s~i~~~~~ig~~~~i~------------------~~~~i 297 (331)
.+++++.|.+++.+ +.++.||++|.|+ .+++|.+ .+||++|.||++|.|. ..++|
T Consensus 56 ~~g~~~~i~~~~~~~~g~~~~IG~~~~I~--~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~I 133 (199)
T 3ftt_A 56 TTTDNVSISIPFDTDYGWNVKLGKNVYVN--TNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHI 133 (199)
T ss_dssp SCCSSEEECSSEEESSSTTEEECSSEEEC--TTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEE
T ss_pred hcCCCeEEeCCEEEEecCCcEECCCeEEC--CCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEE
Confidence 35666777666666 5666777777776 5566642 4677777777777662 22456
Q ss_pred CCCcEECcccEEc-CcEEccCeEEcc
Q 020113 298 GEDVHVADEVYSN-GAVVLPHKEIKS 322 (331)
Q Consensus 298 ~~~~~i~~~~~i~-~~~v~~~~~i~~ 322 (331)
|++|.||.++.|. ++.|+++++|++
T Consensus 134 G~~v~IG~~~~I~~gv~IG~~~vIga 159 (199)
T 3ftt_A 134 GSNTWFGGHVAVLPGVTIGEGSVIGA 159 (199)
T ss_dssp CSSEEECTTCEECTTCEECTTCEECT
T ss_pred cCCcEEcCCCEECCCCEECCCCEECC
Confidence 6666666655552 444444444443
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=101.28 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=58.9
Q ss_pred cCCccCCCceEecceEE------cCCcEECCCcEECCCCCceEe-CCEEcCCCEECCC--------cEEccceEECCCcE
Q 020113 238 SSSKLATGSNIIGNVLV------HEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRW--------ARVENMTILGEDVH 302 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i------~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~--------~~i~~~~~i~~~~~ 302 (331)
.+..|++++.|+++++| |++|.|+.+|+|+ .+++|. +|.|+++|.+... +.|+++|.||.+++
T Consensus 102 ~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~--~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~ 179 (240)
T 3r8y_A 102 DHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLG--GRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVV 179 (240)
T ss_dssp SSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCE
T ss_pred CCcEECCCCEECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCE
Confidence 34445555555444444 4444444444444 567774 6888888888654 77877788888888
Q ss_pred ECcccEE-cCcEEccCeEEccCccCCc
Q 020113 303 VADEVYS-NGAVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 303 i~~~~~i-~~~~v~~~~~i~~~~~~~~ 328 (331)
|.+++.| .+++|++++++..++...+
T Consensus 180 I~~~~~Ig~~~~I~~gsvV~~~vp~~~ 206 (240)
T 3r8y_A 180 VLEGVTVGKGAVVAAGAVVTEDVPPYT 206 (240)
T ss_dssp ECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred ECCCcEECCCCEECCCCEECCCcCCCc
Confidence 8888888 5788888888887765543
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-11 Score=96.93 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=72.0
Q ss_pred EEecCCHHHHHHHHHHHHhhhc-----cccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEE
Q 020113 214 WMDIGQPKDYITGLRLYLDFLQ-----KNSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTV 285 (331)
Q Consensus 214 ~~~i~t~~d~~~a~~~~l~~~~-----~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~i 285 (331)
..-++++....+....+++.-. ..+.+.+++++.|+ ++++|+++++|+.++.|| +++.|. +++|+++|.|
T Consensus 51 ~iaig~~~~r~~~~~~l~~~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG--~~~~I~~~~~i~~~~~I 128 (194)
T 3bfp_A 51 FIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIE--KGVILNTSSVIEHECVI 128 (194)
T ss_dssp EECCCCHHHHHHHHHHHHTTTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEEC--TTCEECTTCEECTTCEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEEC--CCCEECCCCEEcCCCEE
Confidence 3455666554444444332211 12334455555666 666666666666666666 667774 6777777777
Q ss_pred CCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCccCC
Q 020113 286 GRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 286 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~ 327 (331)
|++|+|..+++|.++++||+++.|. ++.|.++++|+++....
T Consensus 129 g~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig 171 (194)
T 3bfp_A 129 GEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILG 171 (194)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEC
Confidence 7888887778888888888888884 77788888888776654
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=100.47 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=29.1
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
++||++|.|+.++.|.++++||++|.||.+++|.+++|+++++|+++..
T Consensus 112 ~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~ 160 (213)
T 3kwd_A 112 VWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVL 160 (213)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCE
T ss_pred eEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCE
Confidence 5566666666666666556666666666666665555555555554443
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-11 Score=97.46 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=74.0
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-C---CEEcCCCEECCCcEE-----------ccceEECCCcE
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-S---SIIGWHSTVGRWARV-----------ENMTILGEDVH 302 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~---s~i~~~~~ig~~~~i-----------~~~~~i~~~~~ 302 (331)
....+++++.|.++++|++++.||++|.|+ ++++|. + ++||++|.|+++|.| ...++||++|.
T Consensus 14 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~--~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~ 91 (187)
T 3r3r_A 14 LFPGIGQRVMIDTSSVVIGDVRLADDVGIW--PLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVT 91 (187)
T ss_dssp BCCEECTTCEECTTCEEEEEEEECTTCEEC--TTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCE
T ss_pred cCcccCCCeEECCCCEEECceEECCCCEEC--CCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCE
Confidence 345688999999999998899999999999 779886 3 499999999999999 34499999999
Q ss_pred ECcccEEcCcEEccCeEEccCccC
Q 020113 303 VADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 303 i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
|++++.|.+++|++++.|+.+...
T Consensus 92 Ig~~~~i~~~~Ig~~~~Ig~~~~I 115 (187)
T 3r3r_A 92 VGHKVMLHGCTIGNRVLVGMGSIV 115 (187)
T ss_dssp ECTTCEEESCEECSSEEECTTCEE
T ss_pred ECCCCEEeCcEECCCCEECCCCEE
Confidence 999999988888888888876654
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-11 Score=96.57 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=29.5
Q ss_pred ccCCCceEec--ceEEcCCcEECCCcEECCCCCceEeC---CEEcCCCEECCCcEEc
Q 020113 241 KLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACISS---SIIGWHSTVGRWARVE 292 (331)
Q Consensus 241 ~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~~---s~i~~~~~ig~~~~i~ 292 (331)
.+++++.|.+ .+.++.++.||++|.|+ .+++|.+ .+||++|.||++|.|.
T Consensus 58 ~ig~~~~I~~p~~~~ig~~v~IG~~~~I~--~~~~i~~~~~i~IG~~~~Ig~~~~I~ 112 (195)
T 3nz2_A 58 HLGHKSCVQPPFHCEFGKTIRIGDHTFIN--MNVVMLDGAPITIGDHVLIGPSTQFY 112 (195)
T ss_dssp EECTTCEECSSEEESCSTTEEECTTCEEC--TTEEEECSSCEEECTTCEECTTCEEE
T ss_pred hcCCCcEEcCCeEEEeCCCeEECCCcEEC--cCCEEecCceEEECCCCEECCCCEEe
Confidence 3566666666 34555666666666666 5566632 3566666666666543
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-11 Score=101.09 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=59.0
Q ss_pred ccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.+.|+++++|. .+++|+++++||++|.|+ .+++|.+ ++||++|.||.+++|.++++||++|+||+
T Consensus 168 ~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~--~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~IGa 245 (287)
T 3mc4_A 168 HPAARLGSGLFLDHATGLVVGETAVVEDNVSIL--HGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAA 245 (287)
T ss_dssp CTTCEECSSCEEESCTTCEECTTCEECSSCEEE--TTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEECT
T ss_pred CCCCEECCCeEEccCCCeEECCCeEECCCCEEc--CCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEECC
Confidence 4455666666666 567777777777777777 6777764 68999999999999998899999999999
Q ss_pred ccEEcCc
Q 020113 306 EVYSNGA 312 (331)
Q Consensus 306 ~~~i~~~ 312 (331)
|++|.+.
T Consensus 246 gsvV~kd 252 (287)
T 3mc4_A 246 GSVVLKS 252 (287)
T ss_dssp TCEECSC
T ss_pred CCEEccc
Confidence 9999643
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-11 Score=96.41 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=37.3
Q ss_pred cCCCceEecceEEcC----CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEcc
Q 020113 242 LATGSNIIGNVLVHE----GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLP 316 (331)
Q Consensus 242 i~~~~~i~~~~~i~~----~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~ 316 (331)
|++++.|++++.|.. ++.||++|.|+ .++.|.+++||++|+||.++.|.+++.||+++.|+.++.+. +..|.+
T Consensus 54 IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig--~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~ 131 (173)
T 1xhd_A 54 IGDRVNVQDQCTLHQSPQYPLILEDDVTVG--HQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPP 131 (173)
T ss_dssp ECTTCEECTTCEEECCTTCCEEECTTCEEC--TTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred ECCCCEECCCCEEEeCCCCCeEECCCCEEC--CCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCC
Confidence 444444444444432 34444444444 44555555555555555555555445555555555555553 234444
Q ss_pred CeEE
Q 020113 317 HKEI 320 (331)
Q Consensus 317 ~~~i 320 (331)
++++
T Consensus 132 ~~vv 135 (173)
T 1xhd_A 132 NTLA 135 (173)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 4433
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=105.39 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=33.4
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
+++++.|+++++|++++.||++|+|+ .+++|. ++.||++|.|++++.|.+++.||++|.|+++++|
T Consensus 134 Ig~~~~I~~~~~I~~~v~IG~~~~I~--~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~I 200 (372)
T 3pmo_A 134 VDPSASVGAYAVIESGARIGAGVSIG--AHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVI 200 (372)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEE
T ss_pred ECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcEE
Confidence 44444444444444455555555554 444443 4555555555555555555555555555555555
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=98.32 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=56.9
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEcc-----ceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVEN-----MTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~~-----~~~i~~~~~i~~~~~i 309 (331)
...+++++.|.+++.|..++.||++|.|+ +++.|.. .+||++|.|+++|.|.. +++||++|.|++++.+
T Consensus 33 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~--~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i 110 (191)
T 3ixc_A 33 SPSVDSTAFIAGNARIIGDVCIGKNASIW--YGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL 110 (191)
T ss_dssp CCEECTTSEECTTCEEEEEEEECTTCEEC--TTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE
T ss_pred CCEECCCCEECCCCEEeCCcEECCCCEEC--CCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE
Confidence 34566777777777777677777777777 6677752 36777777777777762 3777777777777777
Q ss_pred cCcEEccCeEEccCc
Q 020113 310 NGAVVLPHKEIKSSI 324 (331)
Q Consensus 310 ~~~~v~~~~~i~~~~ 324 (331)
.+++|++++.|+++.
T Consensus 111 ~~~~Ig~~~~Ig~~~ 125 (191)
T 3ixc_A 111 HACTLGNNAFVGMGS 125 (191)
T ss_dssp CSCEECTTCEECTTC
T ss_pred ECCEECCCCEECCCC
Confidence 666666666665544
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.4e-11 Score=98.59 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=63.9
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEc
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVL 315 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~ 315 (331)
+.+.+.+.+.|+++++|+++++|++++.|| +++.|. +++|+++|.||++|+|..++.|+++++||++|.| .+++|.
T Consensus 104 ~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG--~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~ 181 (220)
T 4ea9_A 104 PSAVVSPSVRLGEGVAVMAGVAINADSWIG--DLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVI 181 (220)
T ss_dssp TTCEECTTCEECSSCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred CCCEECCCCEECCCCEEcCCCEECCCCEEC--CCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 344556666666667776777777777777 777775 6777777778888888777778777888888887 477788
Q ss_pred cCeEEccCccCC
Q 020113 316 PHKEIKSSIVNP 327 (331)
Q Consensus 316 ~~~~i~~~~~~~ 327 (331)
++++|+++....
T Consensus 182 ~~~~Ig~~~~ig 193 (220)
T 4ea9_A 182 PGVTIGADTIVG 193 (220)
T ss_dssp TTCEECTTCEEC
T ss_pred CCcEECCCCEEC
Confidence 888887776544
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-11 Score=101.73 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=50.4
Q ss_pred ccCCccCCCceEecceEE-----cCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcE
Q 020113 237 NSSSKLATGSNIIGNVLV-----HEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVH 302 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i-----~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~ 302 (331)
.+.+.+++++.|++++.| +.++.||++|.|+ .++.|. ++.||++|.|++++.|.+ .++||++|.
T Consensus 108 ~p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~--~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~ 185 (276)
T 3gos_A 108 VPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCF 185 (276)
T ss_dssp CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEEC--TTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCE
T ss_pred CCCcEECCCCEECCCCEEcCCEEcCCeEECCCCEEC--CCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCE
Confidence 333444444444444333 4466666666666 566665 377777777777776643 467777777
Q ss_pred ECcccEEc-CcEEccCeEEccCc
Q 020113 303 VADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 303 i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
||.+++|. ++.|+++++|+++.
T Consensus 186 IG~~a~I~~gv~IG~~avIgags 208 (276)
T 3gos_A 186 VGARSEVVEGVIVEEGSVISMGV 208 (276)
T ss_dssp ECTTCEECTTCEECTTCEECTTC
T ss_pred ECCCCEECCCCEECCCCEECCCC
Confidence 77777663 55555555555443
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-11 Score=96.02 Aligned_cols=44 Identities=27% Similarity=0.192 Sum_probs=19.8
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIK 321 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~ 321 (331)
++||++|.|++++.|.+ ++||++|.||.++.|. ++.|++++.|+
T Consensus 72 ~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig 116 (173)
T 1v3w_A 72 TEIGEYVTIGHNAMVHG-AKVGNYVIIGISSVILDGAKIGDHVIIG 116 (173)
T ss_dssp EEECSSCEECTTCEEES-CEECSSEEECTTCEECTTCEECSSEEEC
T ss_pred eEECCCCEECCCCEECC-CEECCCCEECCCCEEeCCCEECCCCEEC
Confidence 44455555554444444 4444444444444432 33333333333
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-11 Score=96.69 Aligned_cols=59 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDV 301 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~ 301 (331)
.|++++.|.++++|+.++.||++|.|+ .++.|. +++||++|.|+.++.|.++++|++++
T Consensus 17 ~Ig~~~~I~~~~~I~~~~~IG~~~~Ig--~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~ 76 (192)
T 3mqg_A 17 RIGAHSRIWHWVHICGGAEIGEGCSLG--QNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDV 76 (192)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEEC--TTCEECSSCEECSSCEECTTCEECTTEEECTTC
T ss_pred EECCCCEECCCCEECCCcEECCCCEEC--CCEEECCceEECCCcEEcCCcEEeCCCEECCCC
Confidence 445555555555555555555555555 455553 35555555555555554444444443
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7.9e-11 Score=95.20 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=24.1
Q ss_pred CCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEE
Q 020113 270 KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEI 320 (331)
Q Consensus 270 ~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 320 (331)
+++.|.+++||++|+||.++.|.++++||+++.||.++++. +..|.+++++
T Consensus 82 ~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v 133 (173)
T 1v3w_A 82 HNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV 133 (173)
T ss_dssp TTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred CCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEE
Confidence 34444444444444444444444444445555555444443 2444444444
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-11 Score=104.68 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=58.4
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-----CCEEcCCCEECCCcEEccc--------eEECCCcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-----SSIIGWHSTVGRWARVENM--------TILGEDVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-----~s~i~~~~~ig~~~~i~~~--------~~i~~~~~i~ 304 (331)
+.+.|.+++.|+++++|++++.|+.++.|| +++.|. +++||++|.||+++.|.+. ++||++|.||
T Consensus 189 P~AvI~~GA~IGeGv~Igp~a~Vn~na~IG--dg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IG 266 (347)
T 3r5d_A 189 DTARVRLGAYIGEGTTVMHEGFVNFNAGTE--GPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIG 266 (347)
T ss_dssp SGGGBBTTEEECTTEEECTTCEECTTEEES--SSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTTCEEC
T ss_pred CcCEECCCCEECCCCEECCCCEECCCCEEC--CCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCCCEEC
Confidence 334444455555555444444444444444 444442 4889999999999999875 8999999999
Q ss_pred cccEEcCcEEccCeEEccCccC
Q 020113 305 DEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 305 ~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
.|+.| ++.|+++++|+++...
T Consensus 267 AnAtI-GVtIGd~~iIGAGSVV 287 (347)
T 3r5d_A 267 ANAGI-GIPLGDRNIVEAGLYI 287 (347)
T ss_dssp TTCEE-CSCBCTTCEECTTCEE
T ss_pred CCCEE-eeEECCCCEECCCCEE
Confidence 99999 7777777777766544
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=105.41 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=38.2
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+++++.|+++++|+++++||++|.|+ .++.|. +++||++|.|+++++|.++++||++|.|+++++|
T Consensus 116 ~ig~~~~I~~~~~I~~~~~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 183 (357)
T 4e79_A 116 VISETAYIGHYVVIGENCVVGDNTVIQ--SHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVI 183 (357)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred EECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEE
Confidence 344445555555555555555555555 455554 5666666666666666555666666666666655
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.8e-11 Score=96.33 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=37.6
Q ss_pred EECCCcEECCCCCceEeCC------------EEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 259 KIGDGCLIGPDKHACISSS------------IIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~~s------------~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
.||++|.|+ +++.|..+ +||++|.||.+|.|.+ ++||++|.||.++.| .++.|+++++|+++
T Consensus 60 ~IG~~~~I~--~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~ 134 (189)
T 3r1w_A 60 RIGARTSVQ--DGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAG 134 (189)
T ss_dssp EECTTCEEC--TTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTTCEECSSCEECTT
T ss_pred EECCCCEEC--CCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccC
Confidence 445555555 55666443 6777777777777766 777777777777766 34455555544443
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-11 Score=100.97 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=52.3
Q ss_pred CccCCCceEecceEEc--CCcEECCCcEECCCCCceEe----CCEEcCCCEECCCcEEccc-------------------
Q 020113 240 SKLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACIS----SSIIGWHSTVGRWARVENM------------------- 294 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i~----~s~i~~~~~ig~~~~i~~~------------------- 294 (331)
..|++++.|.++++|. .++.||++|.|+ +++.|. +++||++|.||++|.|.+.
T Consensus 86 v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig--~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~ 163 (252)
T 3jqy_B 86 VRIHKNSKIKGDIVATKGSKVIIGRRTTIG--AGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKD 163 (252)
T ss_dssp EEECTTCEEEEEEEEESSCEEEECTTCEEC--TTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCC
T ss_pred EEECCCCEECCceEEccCCEEEECCCCEEC--CCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCC
Confidence 3466777777766663 356677777777 666665 5677777777777766663
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEccCc
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~ 324 (331)
++||++|.||.++.| .++.|+++++|+++.
T Consensus 164 v~Igd~v~IG~~a~I~~gv~IG~~~~Igags 194 (252)
T 3jqy_B 164 IIISSYVWVGRNVSIMKGVSVGSGSVIGYGS 194 (252)
T ss_dssp EEECSSCEECSSEEECTTCEECTTCEECTTC
T ss_pred eEEecCcEECCCCEECCCCEECCCCEECCCC
Confidence 466666666666655 345555555554443
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-11 Score=96.65 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=36.0
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe-C---CEEcCCCEECCCcEEcc-----------ceEECCCcEECcc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-S---SIIGWHSTVGRWARVEN-----------MTILGEDVHVADE 306 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~---s~i~~~~~ig~~~~i~~-----------~~~i~~~~~i~~~ 306 (331)
+++++.|.++++|+.++.||++|.|+ +++.|. + ++||++|.|++++.|.. .++||++|.|+++
T Consensus 22 ig~~~~I~~~~~i~~~v~IG~~~~I~--~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~ 99 (189)
T 3r1w_A 22 LGERVFVDRSSVIIGDVELGDDCSVW--PLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQ 99 (189)
T ss_dssp ECTTCEECTTCEEEEEEEECTTCEEC--TTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTT
T ss_pred ECCCcEECCCCEEeeeeEECCCCEEC--CCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCC
Confidence 44444444444444444444444444 444443 1 24555555555554433 1244555444444
Q ss_pred cEEcCcEEccCeEEcc
Q 020113 307 VYSNGAVVLPHKEIKS 322 (331)
Q Consensus 307 ~~i~~~~v~~~~~i~~ 322 (331)
+.|.+++|++++.|++
T Consensus 100 ~~i~~~~Ig~~~~Ig~ 115 (189)
T 3r1w_A 100 AMLHGCTIGNRVLIGM 115 (189)
T ss_dssp CEEESCEECSSEEECT
T ss_pred CEEeCcEECCCcEECC
Confidence 4444444444444443
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=100.25 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=49.4
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEE-------------ccceEECCCcEE
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARV-------------ENMTILGEDVHV 303 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i-------------~~~~~i~~~~~i 303 (331)
+.+++++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.| ...++||++|.|
T Consensus 11 ~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~I 88 (259)
T 3hsq_A 11 PKAELHESVEVGPYSIIEGNVSIQEGTIIE--GHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIF 88 (259)
T ss_dssp TTCEECTTCEECTTCEECSSCEECTTCEEC--TTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEc--CCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEE
Confidence 345566667777777777777777777777 667775 4777777777777777 445777777777
Q ss_pred CcccEEc
Q 020113 304 ADEVYSN 310 (331)
Q Consensus 304 ~~~~~i~ 310 (331)
++++.|.
T Consensus 89 g~~~~I~ 95 (259)
T 3hsq_A 89 REYSNIH 95 (259)
T ss_dssp CTTCEEE
T ss_pred CCCCEEC
Confidence 7777665
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-11 Score=101.33 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=60.3
Q ss_pred ccCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccc---eEECCCcEECcccEE
Q 020113 237 NSSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENM---TILGEDVHVADEVYS 309 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~---~~i~~~~~i~~~~~i 309 (331)
.....+++++.|++++.|.. ++.||++|.|+ +++.|. +++||++|.|+++|.|... ++||++|.|++++.|
T Consensus 30 ~~~~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~--~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 30 IGFLSVGKNVLISKKASIYNPGVISIGNNVRID--DFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp TCCSEECSSEEEBTTSEEESGGGEEECSSEEEC--TTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred cCCeEECCCCEECCCeEEccCCeeEECCCCEEC--CCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 34556888999999998887 88999999999 779986 7999999999999999543 889999988888887
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=99.90 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=59.4
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEc-------------cceEECCCcEE
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVE-------------NMTILGEDVHV 303 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~-------------~~~~i~~~~~i 303 (331)
+.+++++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.|+ ..++||++|.|
T Consensus 15 ~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~--~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~I 92 (266)
T 3r0s_A 15 EGAQLGDDVVIEAYAYVSKDAKIGNNVVIK--QGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATI 92 (266)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEEC--TTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEc--CCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEE
Confidence 445666777777777777777777777777 677776 68888888888888884 33778888777
Q ss_pred CcccEEcC--------cEEccCeEEccCc
Q 020113 304 ADEVYSNG--------AVVLPHKEIKSSI 324 (331)
Q Consensus 304 ~~~~~i~~--------~~v~~~~~i~~~~ 324 (331)
+++++|.. +.|++++.|++++
T Consensus 93 g~~~~I~~~~~~~~~~~~IG~~~~I~~~~ 121 (266)
T 3r0s_A 93 REFATINSGTAKGDGFTRIGDNAFIMAYC 121 (266)
T ss_dssp CTTCEEECCCTTTTSEEEECTTCEECTTC
T ss_pred CCceEecCCcccCCccEEECCCceeCCcc
Confidence 77777742 4555555554443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=97.60 Aligned_cols=82 Identities=26% Similarity=0.298 Sum_probs=68.5
Q ss_pred CccCCCceEecceEEcC--------------CcEECCCcEECCCCCceEeC-CEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 240 SKLATGSNIIGNVLVHE--------------GAKIGDGCLIGPDKHACISS-SIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~--------------~~~i~~~~~I~~~~~~~i~~-s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..|++++.|+++++|.. ++.||++|.|+ .++.|.+ ++||++|+||.++.|.+ ++||++|.||
T Consensus 80 v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig--~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Ig 156 (213)
T 3kwd_A 80 FHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSIT--HMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVM 156 (213)
T ss_dssp EEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEEC--TTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEEC
T ss_pred eEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEEC--CCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEc
Confidence 45677777777777653 37788888888 8888875 99999999999999998 9999999999
Q ss_pred cccEEcCcEEccCeEEccCc
Q 020113 305 DEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 305 ~~~~i~~~~v~~~~~i~~~~ 324 (331)
+++++.++.|++++.|+++.
T Consensus 157 ags~V~~~~i~~~~~v~~~~ 176 (213)
T 3kwd_A 157 MHVLIQDVEIPPGKYVPSGM 176 (213)
T ss_dssp SSCEEESCEECTTBEECTTC
T ss_pred CCCEECCcEeCCCCEECCCc
Confidence 99999888888888877654
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-10 Score=92.12 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=56.2
Q ss_pred ccCC-CceEecceEE--cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEc------------------cceE
Q 020113 241 KLAT-GSNIIGNVLV--HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVE------------------NMTI 296 (331)
Q Consensus 241 ~i~~-~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~------------------~~~~ 296 (331)
.+++ ++.|.+++.+ +.++.||++|.|+ .+++|. ...||++|.||++|.|. ..++
T Consensus 59 ~~~~~~~~I~~~~~~~~g~~v~IG~~~~I~--~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~ 136 (190)
T 3hjj_A 59 SSADGKAQINPDFRCDYGYNIHVGKSFFAN--FNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVK 136 (190)
T ss_dssp EESSSCCEECSSCEESSSTTEEECTTCEEC--TTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEE
T ss_pred hcCCCCcEECCCEEEEeCCceEECCceeeC--CCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeE
Confidence 4566 7888877666 6677888888887 667775 35688888888888872 2357
Q ss_pred ECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 297 LGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 297 i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
||++|.||.+++|. ++.|+++++|+++.
T Consensus 137 IG~~v~IG~~~~I~~gv~IG~~~vIgags 165 (190)
T 3hjj_A 137 IGNNVWVGGGAIINPGVSIGDNAVIASGA 165 (190)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 77777777777764 55555555555443
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=94.25 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=42.6
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+.+++++.|++++.|++++.|+.++.|| +++.| .+++|++++.||++|.|++++.|+++++||+++.+
T Consensus 9 ~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG--~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i 78 (192)
T 3mqg_A 9 TAIVDEGARIGAHSRIWHWVHICGGAEIG--EGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFC 78 (192)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEE
T ss_pred CcEECCCCEECCCCEECCCCEECCCcEEC--CCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEE
Confidence 33444445555555555555555556666 66666 35667666777777777666777777777777665
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-10 Score=99.29 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred ccCCccCCCceE--ecceEEcCCcEECCCcEECCCCCceEe-CC-----------------EEcCCCEECCCcEEccceE
Q 020113 237 NSSSKLATGSNI--IGNVLVHEGAKIGDGCLIGPDKHACIS-SS-----------------IIGWHSTVGRWARVENMTI 296 (331)
Q Consensus 237 ~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s-----------------~i~~~~~ig~~~~i~~~~~ 296 (331)
.+.+.|++++.| +.+++|+++++||++|.|+ .+++|. .+ +||++|+||.+|+|.++++
T Consensus 194 ~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~--~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~gv~ 271 (310)
T 3f1x_A 194 HPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLY--QGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVT 271 (310)
T ss_dssp CTTCEECSSCEEESCTTCEECTTCEECSSCEEE--TTCEEECC--------------CCSCEECTTCEECTTCEEESSCE
T ss_pred CCCCEECCCcEECCCCCeEECCceEEcCCCEEC--CCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECCCcE
Confidence 444555555555 4555555666666666666 555553 23 6788888888888877788
Q ss_pred ECCCcEECcccEEcCcE
Q 020113 297 LGEDVHVADEVYSNGAV 313 (331)
Q Consensus 297 i~~~~~i~~~~~i~~~~ 313 (331)
||++|+||.|++|...+
T Consensus 272 IGd~a~IGagsvV~~dV 288 (310)
T 3f1x_A 272 IGKGATVGGNIWVTENV 288 (310)
T ss_dssp ECTTCEECSSCEECSCB
T ss_pred ECCCCEECCCCEECCcc
Confidence 88888888888876543
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=100.45 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=48.7
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe-C--------------CEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-S--------------SIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~--------------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
|++++.|+++++|++++.||++|.|+ ++++|. . ++||++|.|++++.|.++++||+++.|+++
T Consensus 23 Ig~~~~Ig~~~~I~~~v~Ig~~~~I~--~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~ 100 (273)
T 3fs8_A 23 IEDNVYIDYGCIIRDNVHIKKGSFIG--ARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHK 100 (273)
T ss_dssp ECTTCEECTTCEECSSEEECTTCEEC--TTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECTTCEECSS
T ss_pred ECCCcEECCCCEECCCCEECCCcEEC--CCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECCCCEECCc
Confidence 33344444444444444444455554 455553 2 667777777777777655777777777777
Q ss_pred cEEc-CcEEccCeEEccCc
Q 020113 307 VYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 307 ~~i~-~~~v~~~~~i~~~~ 324 (331)
+.|. ++.|++++.|+...
T Consensus 101 ~~I~~~~~Ig~~~~Ig~~~ 119 (273)
T 3fs8_A 101 VTIRENTKIGNNVKIGTLS 119 (273)
T ss_dssp CEECSSCEECSSCEECTTC
T ss_pred eEECCCCEECCCCEECccc
Confidence 7774 67777666666544
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=99.66 Aligned_cols=84 Identities=11% Similarity=0.132 Sum_probs=56.3
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCC----CCceEe-----CCEEcCCCEECCCcEEccc--------eEECCCcEEC
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPD----KHACIS-----SSIIGWHSTVGRWARVENM--------TILGEDVHVA 304 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~----~~~~i~-----~s~i~~~~~ig~~~~i~~~--------~~i~~~~~i~ 304 (331)
|++.++|.+++.|++++.|+++|+|+.+ .+|.|. +++||++|.|++++.|... ++||++|.||
T Consensus 164 I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IG 243 (332)
T 3fsy_A 164 IADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLG 243 (332)
T ss_dssp ESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECTTCEEC
T ss_pred ECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECCCCEEC
Confidence 4444444444444444444444443311 344442 3789999999999999875 8999999999
Q ss_pred cccEEcCcEEccCeEEccCccC
Q 020113 305 DEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 305 ~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
.|++| ++.|+++++|+++...
T Consensus 244 anAtI-gVtIGd~~iIGAGSVV 264 (332)
T 3fsy_A 244 ANSGL-GISLGDDCVVEAGLYV 264 (332)
T ss_dssp TTCEE-CSCBCSSCEECTTCEE
T ss_pred CCCEE-eeEECCCCEECCCCEE
Confidence 99999 8888888888776554
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=99.16 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=28.7
Q ss_pred cEECCCcEECCCCCceEeC-CEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 258 AKIGDGCLIGPDKHACISS-SIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~~-s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
+.||++|.|+ .+|.|.+ ++||++|+||.++.|.+ +.||++|.||++++++++.|+++++++
T Consensus 141 v~IG~~v~Ig--~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v~ 202 (247)
T 1qre_A 141 VYIGNNVSLA--HQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIP 202 (247)
T ss_dssp EEECTTCEEC--TTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred eEECCCCEEC--CCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEEC
Confidence 3444444444 4444443 44555555555555544 555555555555555434444444443
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=100.28 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=35.9
Q ss_pred EECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 259 KIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
.||++|.|+ ++++|. +++||+++.||.++.|+.+++|++++.|+.++.+. ++.|++++.|++++
T Consensus 72 ~Ig~~~~I~--~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~ 137 (273)
T 3fs8_A 72 IIGENALIR--TENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNV 137 (273)
T ss_dssp EECTTCEEC--TTCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTC
T ss_pred EECCCCEEC--CCCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCC
Confidence 333344444 445553 56666666666666666556666666666666553 45555555544443
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=100.72 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=21.8
Q ss_pred CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE
Q 020113 257 GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS 309 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i 309 (331)
++.||++|.|+ .+++|. ++.||++|.|++++.|.+ .++||++|.||.+++|
T Consensus 174 g~~IG~~~~I~--~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I 233 (316)
T 3tk8_A 174 GAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEV 233 (316)
T ss_dssp TCEECTTCEEC--TTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEE
T ss_pred CCEECCCCEEc--cceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEE
Confidence 44444444444 334442 344444444444444333 3444444444444443
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=100.11 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=28.6
Q ss_pred CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 257 GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
++.||++|.|+ .+++|. ++.||++|.|+.++.+.+ .++||++|.||.++.| .++.|+++++|+++
T Consensus 158 ~~~IG~~~~I~--~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgag 232 (304)
T 3eg4_A 158 GAYVDKGAMID--TWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMG 232 (304)
T ss_dssp TCEECTTCEEC--TTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CCEECCCcEEc--CCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCC
Confidence 44444444444 334442 244444444444444433 3455555555555544 23444444444433
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=94.49 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=14.2
Q ss_pred CccCCCceEecceEEcCCcEECCCcEEC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIG 267 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~ 267 (331)
.+|+++++|.+++.|+.++.||++|+|+
T Consensus 13 v~I~~~a~I~~~a~I~g~V~IG~~~~I~ 40 (194)
T 3tv0_A 13 VKIAPGAVVCVESEIRGDVTIGPRTVIH 40 (194)
T ss_dssp EEECTTCEECTTSEEESSEEECTTCEEC
T ss_pred CEECCCCEEcCCCEEeCCCEECCCCEEC
Confidence 3455555555555555555555555554
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=99.42 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=45.8
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEc------------cceEECCCcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVE------------NMTILGEDVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~------------~~~~i~~~~~i~ 304 (331)
+.+.+++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.|. ..++||+++.|+
T Consensus 12 ~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~--~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~ 89 (270)
T 1j2z_A 12 PKAEINKGVEIGEFCVIGDGVKLDEGVKLH--NNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIR 89 (270)
T ss_dssp TTSEECTTCEECTTCEECTTCEECTTCEEC--TTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEEC
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEc--CCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEEC
Confidence 345566667777777777777777777777 667776 57777777777777773 225555555555
Q ss_pred cccEE
Q 020113 305 DEVYS 309 (331)
Q Consensus 305 ~~~~i 309 (331)
++++|
T Consensus 90 ~~~~I 94 (270)
T 1j2z_A 90 EFCMI 94 (270)
T ss_dssp TTCEE
T ss_pred CCeEE
Confidence 55544
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=100.03 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=52.4
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
..|++++.|..+++|+.++.||++|.|+ .++.+.+ ++||++|.||.+|.|..+++||++|.||.+++|.
T Consensus 159 ~~IG~~~~I~~~~~Ig~~~~IG~~v~I~--~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~ 236 (304)
T 3eg4_A 159 AYVDKGAMIDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIG 236 (304)
T ss_dssp CEECTTCEECTTEEECTTCEECTTCEEC--TTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CEECCCcEEcCCcEECCCCccCCCcEEC--CCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEc
Confidence 3455666666666666667777777777 6677755 8888999999998888888888888888888885
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=100.11 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=37.8
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEECccc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVADEV 307 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~~~~ 307 (331)
.+++++.|+++++|++++.||++|.|+ .+++|. +++||++|.|++++.|+. .++||++|.|++++
T Consensus 36 ~ig~~v~Ig~~~~I~~~v~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~ 113 (283)
T 4eqy_A 36 QLHETVEVGPYAIVGSNVTIGARTTIG--SHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFT 113 (283)
T ss_dssp EECTTCEECTTCEECTTEEECTTCEEC--TTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTE
T ss_pred EECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcce
Confidence 334444444444444445555555555 455554 466667777766666621 25666666666666
Q ss_pred EEc
Q 020113 308 YSN 310 (331)
Q Consensus 308 ~i~ 310 (331)
.|.
T Consensus 114 ~I~ 116 (283)
T 4eqy_A 114 TIH 116 (283)
T ss_dssp EEE
T ss_pred eEc
Confidence 664
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.4e-11 Score=108.99 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=74.2
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEcc
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLP 316 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~ 316 (331)
.....+++++.|.+.+++..++.||++|.|+ .++.|.+++||++|.|+++|.|.+ |+||++|.|++++.+.+++|++
T Consensus 271 ~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~--~~a~I~~v~IG~~~~I~~~~~I~~-~vIG~~~~Ig~~a~I~gv~IGd 347 (496)
T 3c8v_A 271 ASGAGSASGASVSGYAVIKGDTVIGENVLVS--QRAYLDNAWMGKGSNAQENCYIIN-SRLERNCVTAHGGKIINAHLGD 347 (496)
T ss_dssp -----CCTTCEECTTSEEESSCEECTTCEEC--TTCEEEEEEECTTCEECTTCEEEE-EEEEESCEECTTCEEESEEEEE
T ss_pred ccCcccCCCcEECCCcEEeCCeEECCCCEEC--CCcEEeceEecCCCEECCCceEec-eEeCCCCEECCCcEEcCceECC
Confidence 3456788999999999999999999999999 789999999999999999999998 9999999999999998888888
Q ss_pred CeEEccCcc
Q 020113 317 HKEIKSSIV 325 (331)
Q Consensus 317 ~~~i~~~~~ 325 (331)
++.|+++..
T Consensus 348 ~v~IG~~a~ 356 (496)
T 3c8v_A 348 MIFTGFNSF 356 (496)
T ss_dssp TCEECTTCE
T ss_pred CcEECCCCE
Confidence 887776653
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=101.54 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=47.6
Q ss_pred eEEecCCHHHHHHHHHHHHhhhc----cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECC
Q 020113 213 FWMDIGQPKDYITGLRLYLDFLQ----KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGR 287 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~~l~~~~----~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~ 287 (331)
.+.-+++|...+.....++.... ..+++.+++++.|++++.|+++++|+++++|| +++.|. +++|+++|.||+
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG--~~~~I~~~~~I~~~~~IG~ 155 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVG--DNTVIQSHTKLDDNVEVGK 155 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECS
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCCEECCCCEECC
Confidence 46667777754433222221111 12223334444444444444444444444444 445553 455555555555
Q ss_pred CcEEccceEECCCcEECcccEEc-CcEEc
Q 020113 288 WARVENMTILGEDVHVADEVYSN-GAVVL 315 (331)
Q Consensus 288 ~~~i~~~~~i~~~~~i~~~~~i~-~~~v~ 315 (331)
+|.|..++.|+++++||++|.|. +++|+
T Consensus 156 ~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig 184 (357)
T 4e79_A 156 DCFIDSYVTITGSSKLRDRVRIHSSTVIG 184 (357)
T ss_dssp SCEECTTCEECTTCEECSSCEECTTCEES
T ss_pred CCEECCCcEEecccEEEeEeeccCCeEEC
Confidence 55555555555555555555552 45553
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-10 Score=91.02 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=38.2
Q ss_pred CceEecc--eEEcCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEc------------------cceEECCCc
Q 020113 245 GSNIIGN--VLVHEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVE------------------NMTILGEDV 301 (331)
Q Consensus 245 ~~~i~~~--~~i~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~------------------~~~~i~~~~ 301 (331)
++.|.++ +.++.++.||++|.|+ .+++|. ..+||++|.||++|.|. ..++||++|
T Consensus 58 ~~~I~~~~~~~~g~~v~IG~~~~I~--~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v 135 (182)
T 1ocx_A 58 EAYIEPTFRCDYGYNIFLGNNFFAN--FDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNV 135 (182)
T ss_dssp SEEECSCEEESSSTTEEECSSEEEC--SSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTC
T ss_pred CEEEeCCEEEEeCCCEEECCCcEEe--CCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCe
Confidence 5555554 2234555555555555 445553 24555666666555552 225555555
Q ss_pred EECcccEEc-CcEEccCeEEcc
Q 020113 302 HVADEVYSN-GAVVLPHKEIKS 322 (331)
Q Consensus 302 ~i~~~~~i~-~~~v~~~~~i~~ 322 (331)
.||.++.|. ++.|+++++|++
T Consensus 136 ~Ig~~a~I~~gv~IG~~~vIga 157 (182)
T 1ocx_A 136 WIGGRAVINPGVTIGDNVVVAS 157 (182)
T ss_dssp EECTTCEECTTCEECTTCEECT
T ss_pred EECCCCEECCCcEECCCCEECC
Confidence 555555542 344444444443
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=100.62 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=14.2
Q ss_pred EEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 278 IIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 278 ~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
+||++|+||.+|+|.++++||++|.||+|++|
T Consensus 225 ~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV 256 (313)
T 3q1x_A 225 TVGDYVTIGTGAKVLGNIIVGSHVRIGANCWI 256 (313)
T ss_dssp EECSSCEECTTCEEESSCEECSSEEECTTCEE
T ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEE
Confidence 44444444444444444444444444444444
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6e-10 Score=95.41 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=58.3
Q ss_pred ccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.+.|+++++|. .+++||++++||++|.|+ .+++|.+ ++||++|.||.+++|.++++||++|+||.
T Consensus 141 ~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~--~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGa 218 (267)
T 1ssq_A 141 HPAAKIGHGIMFDHATGIVVGETSVIENDVSIL--QGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGA 218 (267)
T ss_dssp CTTCEECSSCEESSCTTCEECTTCEECTTCEEC--TTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECT
T ss_pred CCCCEECCCEEECCCCceEECCeeEECCCCEEc--CCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEECC
Confidence 4455666777666 367777778888888888 7788764 58999999999999988899999999999
Q ss_pred ccEEcC
Q 020113 306 EVYSNG 311 (331)
Q Consensus 306 ~~~i~~ 311 (331)
|+++..
T Consensus 219 gsvV~~ 224 (267)
T 1ssq_A 219 NSVVLN 224 (267)
T ss_dssp TCEECS
T ss_pred CCEEcc
Confidence 999864
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=106.36 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=54.3
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+..|++++.|+++++|+++++||++|.|+ .++.|.+|+|++++.|++++.|.+ ++||++|.||+++.+.
T Consensus 262 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig--~~~~i~~~~i~~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~i~ 330 (401)
T 2ggo_A 262 PVYIGKGSEIGPNSYLRPYTILVEKNKIG--ASVEVKESVIMEGSKIPHLSYVGD-SVIAEDVNFGAGTLIA 330 (401)
T ss_dssp SEEECTTCEECSSCEECTTEEECSSCEEE--ETCEEESEEECTTCEEEESCEEES-CEECTTCEECTTCEEC
T ss_pred CeEECCCCEECCCCEEcCCcEECCCCEEC--CCCEEecCEEcCCcEECCCceEcc-eEECCCcEECCCcEEc
Confidence 44567777777777777778888888888 778888888888888888888877 8888888888777765
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=98.20 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=57.6
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
...|++++.|.++++|+.++.||++|.|+ .++.+. +++||++|.||.+|.|..++.||++|.||.+++|
T Consensus 133 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~--~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV 210 (276)
T 3gos_A 133 GAFVDEGTMVDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFI 210 (276)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEEC--TTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEEC--CCCEECCccccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 44677777777778887778888888888 677774 4889999999999999888999999999999888
Q ss_pred cC
Q 020113 310 NG 311 (331)
Q Consensus 310 ~~ 311 (331)
..
T Consensus 211 ~~ 212 (276)
T 3gos_A 211 GQ 212 (276)
T ss_dssp CT
T ss_pred CC
Confidence 53
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=97.63 Aligned_cols=85 Identities=14% Similarity=0.256 Sum_probs=61.7
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEECc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVAD 305 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~~ 305 (331)
.+.+++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.|.. .++||+++.|++
T Consensus 17 ~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~ 94 (262)
T 2qia_A 17 GASIGANAHIGPFCIVGPHVEIGEGTVLK--SHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRE 94 (262)
T ss_dssp TCEECTTCEECTTCEECTTEEECTTCEEC--SSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECT
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEEC--CCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCC
Confidence 34455666666666666666677777777 667775 688888888888888852 488899999999
Q ss_pred ccEEcC--------cEEccCeEEccCcc
Q 020113 306 EVYSNG--------AVVLPHKEIKSSIV 325 (331)
Q Consensus 306 ~~~i~~--------~~v~~~~~i~~~~~ 325 (331)
++.|.. +.|++++.|++++.
T Consensus 95 ~~~I~~~~~~~~~~~~IG~~~~Ig~~~~ 122 (262)
T 2qia_A 95 SVTIHRGTVQGGGLTKVGSDNLLMINAH 122 (262)
T ss_dssp TCEEECCCTTTTSEEEECSSCEECTTCE
T ss_pred CCEEcCCccCCCCcCEECCCcEEeeeeE
Confidence 998853 77777777776554
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=99.34 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=40.7
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+...|++++.|.+++.|++++.|+++|+|++ ++.||++|.|++++.|.+++.||++|.|++++.|
T Consensus 20 ~~~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~-------~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 85 (283)
T 4eqy_A 20 GSMSRIHPTAIIEPGAQLHETVEVGPYAIVGS-------NVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV 85 (283)
T ss_dssp ---CCBCTTCEECTTCEECTTCEECTTCEECT-------TEEECTTCEECTTCEECSEEEECSSCEECTTEEE
T ss_pred CCCcccCCCCEECCCCEECCCCEECCCCEECC-------CCEECCCCEECCCCEECCCcEECCCcEEcCCcEE
Confidence 34445667777766666666666666666662 3566666666666666655666666666666666
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=98.06 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=45.1
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe-------------CCEEcCCCEECCCcEEcc-------ceEECCCc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-------------SSIIGWHSTVGRWARVEN-------MTILGEDV 301 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-------------~s~i~~~~~ig~~~~i~~-------~~~i~~~~ 301 (331)
|++++.|+++++|+.++.||++|.|+ .+++|. +++||++|.|+++|+|.. .++||++|
T Consensus 38 IG~~~~I~~~~~I~~~~~IG~~~~I~--~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~ 115 (262)
T 2qia_A 38 IGEGTVLKSHVVVNGHTKIGRDNEIY--QFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDN 115 (262)
T ss_dssp ECTTCEECSSCEECSEEEECSSCEEC--TTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSC
T ss_pred ECCCcEECCCCEECCCcEECCCCEEe--cceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCCc
Confidence 44444444444444455555555555 555553 466777777777777754 26677777
Q ss_pred EECcccEE-cCcEEccCeEEcc
Q 020113 302 HVADEVYS-NGAVVLPHKEIKS 322 (331)
Q Consensus 302 ~i~~~~~i-~~~~v~~~~~i~~ 322 (331)
.|++++.| .++.|++++.|+.
T Consensus 116 ~Ig~~~~I~~~~~Ig~~~~i~~ 137 (262)
T 2qia_A 116 LLMINAHIAHDCTVGNRCILAN 137 (262)
T ss_dssp EECTTCEECTTCEECSSCEECT
T ss_pred EEeeeeEECCCCEECCCeEECC
Confidence 76666666 3455555444443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-10 Score=97.88 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=40.3
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEc------------cceEECCCcEECcc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVE------------NMTILGEDVHVADE 306 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~------------~~~~i~~~~~i~~~ 306 (331)
+.+++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.|+ ..++||+++.|+++
T Consensus 20 a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~ 97 (265)
T 4e6u_A 20 AVIASDVQIGPYCIIGPQVTIGAGTKLH--SHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREH 97 (265)
T ss_dssp CEECTTCEECTTCEECTTEEECTTCEEC--SSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTT
T ss_pred CEECCCCEECCCeEECCCCEECCCCEEc--CCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCc
Confidence 3445555555555555555555555555 556664 46666666666666662 13666666666666
Q ss_pred cEEc
Q 020113 307 VYSN 310 (331)
Q Consensus 307 ~~i~ 310 (331)
+.|.
T Consensus 98 ~~I~ 101 (265)
T 4e6u_A 98 CSLH 101 (265)
T ss_dssp CEEE
T ss_pred eEEC
Confidence 6664
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-10 Score=100.22 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=69.7
Q ss_pred EEeCceEEecCC--HHHHHHHHHHHHhhhc------------------cccCCccCCCceEecceEEcCCcEECCC-cEE
Q 020113 208 MVLPGFWMDIGQ--PKDYITGLRLYLDFLQ------------------KNSSSKLATGSNIIGNVLVHEGAKIGDG-CLI 266 (331)
Q Consensus 208 ~~~~~~~~~i~t--~~d~~~a~~~~l~~~~------------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~-~~I 266 (331)
+....+|.+.++ |++|......+..+-. .....+|++++.|.+++.|++++.|+++ |+|
T Consensus 166 ~l~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~I 245 (387)
T 2rij_A 166 LLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYV 245 (387)
T ss_dssp HSCCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCEE
T ss_pred cCceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeEE
Confidence 334567999888 7888888777663210 0012334444454444444444444443 444
Q ss_pred CCC-----CCceE-----eCCEEcCCCEECCCcEE----ccc----eEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 267 GPD-----KHACI-----SSSIIGWHSTVGRWARV----ENM----TILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 267 ~~~-----~~~~i-----~~s~i~~~~~ig~~~~i----~~~----~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+++ + +.| .+++||++|.|++++.| .++ ++||++|.||.++. .++.|+++++|+++...
T Consensus 246 g~nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv-~GV~IGdgavIGAGsVV 321 (387)
T 2rij_A 246 NFNAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV-TGIPLGDNCIVDAGIAV 321 (387)
T ss_dssp CTTCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE-ECSCBCTTCEECTTCEE
T ss_pred CCCcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc-CCcEECCCCEECCCCEE
Confidence 411 3 333 24666666666666653 222 68899999999888 77777777777776543
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-10 Score=96.50 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=38.4
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
++||++|.||++|.|.+.++||++|.||.++.|.++.|+++++|+++...
T Consensus 141 v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 141 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCCCEECCCCEE
Confidence 77888888888888887788888888888888755666666666655443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-10 Score=97.49 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 244 TGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 244 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
..+.|++.++|++++.|+++|.|+ +++.|. ++.||++|.|++++.|.+++.||++|.|++++.|
T Consensus 6 ~~~~I~p~a~i~~~a~Ig~~v~Ig--~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 70 (265)
T 4e6u_A 6 NHDLIHSTAIIDPSAVIASDVQIG--PYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASV 70 (265)
T ss_dssp --CCBCTTCEECTTCEECTTCEEC--TTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEE
T ss_pred CCCeECCCCEECCCCEECCCCEEC--CCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEE
Confidence 333444444444444444444444 334442 3556666666666666655666666666666665
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9.2e-10 Score=96.38 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=52.2
Q ss_pred CCccCCCceEecceEE--cCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccc----eEECCCcEECcccEEc-
Q 020113 239 SSKLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENM----TILGEDVHVADEVYSN- 310 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~- 310 (331)
...|++++.|+++++| +.+++||++|+|| +++.|. +++||+++.++.++.+..+ ++||++|.||.++.|.
T Consensus 163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG--~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilg 240 (313)
T 3q1x_A 163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIG--EWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLG 240 (313)
T ss_dssp CCEECTTCEECSSCEESSCTTCEECTTCEEC--SSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEES
T ss_pred CeEECCCCEECCCEEECCCCceEECCCcEEC--CCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECC
Confidence 4456777777777777 4566777777777 666663 5666666666666555442 3677777777777653
Q ss_pred CcEEccCeEEccCc
Q 020113 311 GAVVLPHKEIKSSI 324 (331)
Q Consensus 311 ~~~v~~~~~i~~~~ 324 (331)
++.|+++++|+++.
T Consensus 241 gv~IG~~a~IGags 254 (313)
T 3q1x_A 241 NIIVGSHVRIGANC 254 (313)
T ss_dssp SCEECSSEEECTTC
T ss_pred CcEECCCCEECCCC
Confidence 45555555555443
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=94.45 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=56.5
Q ss_pred ccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.++|+++++|. .+++||++++||++|.|+ .+++|.+ ++||++|.||.++.|.++++||++|+||.
T Consensus 161 ~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~--~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGa 238 (289)
T 1t3d_A 161 HPAAKIGRGIMLDHATGIVVGETAVIENDVSIL--QSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGA 238 (289)
T ss_dssp CTTCEECSSCEECSCTTCEECTTCEECSSCEEC--TTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECT
T ss_pred cCCCEEcCCEEECCCCceEECCCcEECCCCEEc--CCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEECC
Confidence 3455666666665 356777777777777777 6677754 68999999999999988899999999999
Q ss_pred ccEEcC
Q 020113 306 EVYSNG 311 (331)
Q Consensus 306 ~~~i~~ 311 (331)
|+++..
T Consensus 239 gsvV~~ 244 (289)
T 1t3d_A 239 GSVVLQ 244 (289)
T ss_dssp TCEECS
T ss_pred CCEEcc
Confidence 998864
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-10 Score=98.46 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=46.8
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc----ceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN----MTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~----~~~i~~~~~i~~~~~i 309 (331)
.+.+++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.|.. +++||+++.|++++.|
T Consensus 19 ~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~--~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~I 92 (305)
T 3t57_A 19 NAVIGKGVSVGPYCTIGSSVKLGNGCKLY--PSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVV 92 (305)
T ss_dssp TSEECTTCEECTTCEECTTEEECTTCEEC--TTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEE
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEEC--CCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEe
Confidence 44555666666666666666666666666 667775 677777777777777763 3777777777777776
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.2e-10 Score=98.42 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=50.5
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
.|++++.|..+++|+.++.||++|.|+ .++.|.+ ++||++|.||.+|.|..++.||++|.||+|++|..
T Consensus 176 ~IG~~~~I~~~~~Ig~~~~IG~~v~I~--~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~ 253 (316)
T 3tk8_A 176 YVDEGTMVDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQ 253 (316)
T ss_dssp EECTTCEECTTEEECTTCEECTTCEEC--TTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred EECCCCEEccceEECCCCEECCCCEEc--CCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 456666666666666677777777777 6666644 77888888888888887788888888888888753
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.3e-10 Score=100.68 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=65.1
Q ss_pred EEecCCHHHHHHHHHHHHhhhc-----cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECC
Q 020113 214 WMDIGQPKDYITGLRLYLDFLQ-----KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGR 287 (331)
Q Consensus 214 ~~~i~t~~d~~~a~~~~l~~~~-----~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~ 287 (331)
+.-+++|+..+.....++.... ..+.+.+++++.|+++++|+++++|+++++|| +++.|. +++|+++|.||+
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG--~~~~I~~~~~Ig~~v~IG~ 172 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIG--AGVSIGAHCVIGARSVIGE 172 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECT
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCCEECCCCEECC
Confidence 5666777655533222222111 12344555666666666666677777777777 777773 678888888888
Q ss_pred CcEEccceEECCCcEECcccEEc-CcEEc
Q 020113 288 WARVENMTILGEDVHVADEVYSN-GAVVL 315 (331)
Q Consensus 288 ~~~i~~~~~i~~~~~i~~~~~i~-~~~v~ 315 (331)
+|.|..+++|+++++||++|.|. ++.|+
T Consensus 173 ~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig 201 (372)
T 3pmo_A 173 GGWLAPRVTLYHDVTIGARVSIQSGAVIG 201 (372)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEEE
T ss_pred CcccCCCcEEEeeeEECceeeccCCcEEe
Confidence 88888668888888888888885 67764
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-10 Score=96.54 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=38.2
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
|++++.|.+++.|++++.|+++|.|++ +++||++|+|+++|.|.+++.||++|.|++++.|
T Consensus 4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~-------~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~I 64 (270)
T 1j2z_A 4 IAKTAIISPKAEINKGVEIGEFCVIGD-------GVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 64 (270)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECT-------TCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred cCCCCEECCCCEECCCCEECCCCEECC-------CCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEE
Confidence 556666666666655555555555552 3666666666666666655666666666666666
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-10 Score=98.60 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=46.0
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-----CcE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-----GAV 313 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-----~~~ 313 (331)
+..|++++.|.+++.|++++.||++|+|++ ++.||++|.|++++.|.+++.||++|.|++++.|. ++.
T Consensus 7 ~~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~-------~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~ 79 (305)
T 3t57_A 7 EVLIHPSAVVHPNAVIGKGVSVGPYCTIGS-------SVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTF 79 (305)
T ss_dssp --CBCTTSEECTTSEECTTCEECTTCEECT-------TEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEE
T ss_pred CCeECCCCEECCCCEECCCCEECCCCEECC-------CCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceE
Confidence 345666666666666666666666665552 36667777777777776557777777777766664 244
Q ss_pred EccCeEEccC
Q 020113 314 VLPHKEIKSS 323 (331)
Q Consensus 314 v~~~~~i~~~ 323 (331)
|++++.|+++
T Consensus 80 IG~~~~Ig~~ 89 (305)
T 3t57_A 80 IGCNNIIGHH 89 (305)
T ss_dssp ECSSCEECTT
T ss_pred ECCceEECCc
Confidence 4444444433
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-10 Score=90.93 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEE
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i 320 (331)
.++||++|+||.+|.|..+++||++|.||+++++... |.+++++
T Consensus 130 ~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~-vp~~~vv 173 (185)
T 2p2o_A 130 PVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD-VPANAVV 173 (185)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC-BCTTEEE
T ss_pred CeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC-CCCCcEE
Confidence 3566666666666666655666666666666666543 3344443
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-10 Score=90.99 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=36.1
Q ss_pred ECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEc
Q 020113 260 IGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIK 321 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~ 321 (331)
||+++.|+ .++.+.++.|+++|+||.+++|.+++.||++|.||+++.|. ++.|.+++++.
T Consensus 88 Ig~~~~i~--~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~ 148 (194)
T 3tv0_A 88 IGTNNVFE--VGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIY 148 (194)
T ss_dssp ECSSCEEC--TTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEE
T ss_pred ECCcceEe--cceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEE
Confidence 33444444 44555556666666666666666666667777777666664 45566665553
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-10 Score=92.01 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=51.3
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|.++++|.+ ++.||++|.|+ +++.|. .++||++|+||.+|+|..++.||+
T Consensus 80 ~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig--~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 157 (190)
T 3hjj_A 80 HVGKSFFANFNCVILDVCEVRIGDHCMFA--PGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGD 157 (190)
T ss_dssp EECTTCEECTTCEEECSSCEEECTTCEEC--TTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECT
T ss_pred EECCceeeCCCeEEEeCCCeEECCceEEc--CCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECC
Confidence 3555566666666654 44677777777 566662 357888888888888888888888
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
+|+||+++++.+.
T Consensus 158 ~~vIgagsvV~~d 170 (190)
T 3hjj_A 158 NAVIASGAVVTKD 170 (190)
T ss_dssp TCEECTTCEECSC
T ss_pred CCEECCCCEECcc
Confidence 8888888888755
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-10 Score=95.87 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.|++++.|.+++.|++++.|+++|+|++ ++.||++|.|++++.|.+++.||++|.|++++.|
T Consensus 6 ~I~p~a~I~~~a~Ig~~v~I~~~~~I~~-------~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 67 (266)
T 3r0s_A 6 KIHPSAVIEEGAQLGDDVVIEAYAYVSK-------DAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIV 67 (266)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECT-------TCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred ccCCCCEECCCCEECCCCEECCCCEECC-------CCEECCCCEEcCCeEEeCCcEECCCcEEccCcee
Confidence 3556666666666655555555555552 3555666666666666655666666666666666
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-10 Score=98.44 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=49.7
Q ss_pred EecCCHHHHHHHHHHHHhhhc-----cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCC
Q 020113 215 MDIGQPKDYITGLRLYLDFLQ-----KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRW 288 (331)
Q Consensus 215 ~~i~t~~d~~~a~~~~l~~~~-----~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~ 288 (331)
.-+.+|...+.....++.... ..+++.+++++.|+++++|+++++|+++++|| +++.|. +++|+++|.||++
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG--~~~~I~~~~~Ig~~~~IG~~ 151 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELG--DNVIIGAGCFVGKNSKIGAG 151 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTT
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEEC--CCcEECCCcEECCCCEECCC
Confidence 556677764444333333211 12233344444444444444455555555555 555553 4555555555555
Q ss_pred cEEccceEECCCcEECcccEEc-CcEE
Q 020113 289 ARVENMTILGEDVHVADEVYSN-GAVV 314 (331)
Q Consensus 289 ~~i~~~~~i~~~~~i~~~~~i~-~~~v 314 (331)
|.|..++.|+++++||++|.|. ++.+
T Consensus 152 ~~I~~~~~I~~~~~IG~~~~I~~g~~I 178 (341)
T 3eh0_A 152 SRLWANVTIYHEIQIGQNCLIQSGTVV 178 (341)
T ss_dssp CEECSSCEECTTCEECSSCEECTTCEE
T ss_pred cEECCCcEECCCCEECCccEEcCCcEE
Confidence 5555556666666666666663 4544
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.7e-10 Score=91.31 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=56.7
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceE-------------------eCCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACI-------------------SSSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i-------------------~~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|.++++|.+ .+.||++|.|+ +++.| ..++||++|+||.+|.|..+++||+
T Consensus 78 ~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig--~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 155 (188)
T 3srt_A 78 HVGENFFANYDCIFLDVCKIEIGDNVMLA--PNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD 155 (188)
T ss_dssp EECTTEEECTTEEEECSSCEEECSSCEEC--TTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECS
T ss_pred EECCcccccCceEEecCCceEECCeeEEC--CCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECC
Confidence 4555555555555544 33778888888 66777 3578999999999999998899999
Q ss_pred CcEECcccEEcCcEEccCeEE
Q 020113 300 DVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 300 ~~~i~~~~~i~~~~v~~~~~i 320 (331)
+|.||+++++.+.+.....++
T Consensus 156 ~~vIgagsvV~~dvp~~~v~~ 176 (188)
T 3srt_A 156 NVVIGAGSVVTKDIPPNTVAV 176 (188)
T ss_dssp SEEECTTCEECSCBCSSEEEE
T ss_pred CCEECCCCEECcccCCCCEEE
Confidence 999999999986643333333
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-10 Score=99.53 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=36.8
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
+.+++++.|.+++.|+++++||++|.|+ ++|.|.+|+|++++.|+++++|.+ ++|+++|.|+
T Consensus 66 a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig--~~~~I~~~~Ig~~~~I~~~s~I~~-s~I~~~~~I~ 127 (334)
T 2pig_A 66 AMAFAGTEITGNARITQPCTLYNNVRIG--DNVWIDRADISDGARISDNVTIQS-SSVREECAIY 127 (334)
T ss_dssp CEEETTCEECTTCEEESSCEEESSCEEC--TTCEEESCEEESSCEECTTCEEES-CEEESSEEEC
T ss_pred eEEcCCcEECCCcEEeeeeeECCCcEEC--CCCEEEeEEEcCCCEEeCCcEEec-cEEcCCeEEe
Confidence 3455566666666666666666666666 556666666666666666666655 4444444433
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=95.73 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCccCCCceEecceEE--cCCcEECCCcEECCCCCceEeCCEEcCCCEECCCc-----------------EEccceEECC
Q 020113 239 SSKLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWA-----------------RVENMTILGE 299 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~-----------------~i~~~~~i~~ 299 (331)
...|++++.|+++++| +.+++||++|+|| ++ +.|+++|.||.++ +|+++|.||.
T Consensus 190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG--~~-----v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGa 262 (310)
T 3f1x_A 190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIG--NN-----VKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYS 262 (310)
T ss_dssp SCEECTTCEECSSCEEESCTTCEECTTCEEC--SS-----CEEETTCEEECC--------------CCSCEECTTCEECT
T ss_pred CcEECCCCEECCCcEECCCCCeEECCceEEc--CC-----CEECCCCEECCCccccccccccccCCCCCCEECCCcEEcC
Confidence 3456666666666666 5556666666666 33 4444444444444 3444444444
Q ss_pred CcEECcccEE-cCcEEccCeEEccCccCCcc
Q 020113 300 DVHVADEVYS-NGAVVLPHKEIKSSIVNPEI 329 (331)
Q Consensus 300 ~~~i~~~~~i-~~~~v~~~~~i~~~~~~~~~ 329 (331)
+++|..+++| .+++|+.+++|.+++...++
T Consensus 263 ga~Il~gv~IGd~a~IGagsvV~~dVp~~sv 293 (310)
T 3f1x_A 263 NATILGRVTIGKGATVGGNIWVTENVPAGSR 293 (310)
T ss_dssp TCEEESSCEECTTCEECSSCEECSCBCTTCE
T ss_pred CCEECCCcEECCCCEECCCCEECCccCCCcE
Confidence 4444444444 24555555555555554443
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.9e-10 Score=89.52 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=59.6
Q ss_pred ccCCCceEecceEEc--CCcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|.++++|. .++.||++|.|+ +++.|. +++||++|+||.+|.|..++.||+
T Consensus 74 ~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig--~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~ 151 (182)
T 1ocx_A 74 FLGNNFFANFDCVMLDVCPIRIGDNCMLA--PGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151 (182)
T ss_dssp EECSSEEECSSEEEECSSCEEECTTCEEC--TTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred EECCCcEEeCCeEEEeccceEEcCCcEEe--CCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEECC
Confidence 456666666666663 356778888888 667772 578999999999999988899999
Q ss_pred CcEECcccEEcCcEEccCeEEc
Q 020113 300 DVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 300 ~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
+|+||.++++.+. |.+++++.
T Consensus 152 ~~vIgagsvV~~d-ip~~~vv~ 172 (182)
T 1ocx_A 152 NVVVASGAVVTKD-VPDNVVVG 172 (182)
T ss_dssp TCEECTTCEECSC-BCSSEEEE
T ss_pred CCEECCCCEECCc-CCCCcEEE
Confidence 9999999999765 55665554
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=94.53 Aligned_cols=29 Identities=7% Similarity=0.355 Sum_probs=17.6
Q ss_pred CCccCCCceEecceEEc--CCcEECCCcEEC
Q 020113 239 SSKLATGSNIIGNVLVH--EGAKIGDGCLIG 267 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~ 267 (331)
...|++++.|+++++|+ .+++||++|+||
T Consensus 164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IG 194 (287)
T 3mc4_A 164 QTDIHPAARLGSGLFLDHATGLVVGETAVVE 194 (287)
T ss_dssp CCEECTTCEECSSCEEESCTTCEECTTCEEC
T ss_pred CeEECCCCEECCCeEEccCCCeEECCCeEEC
Confidence 44566666666666665 455666666666
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=90.09 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=49.4
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|.++++|.+ .+.||++|.|+ +++.|. .++||++|+||.+|.|..++.||+
T Consensus 78 ~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig--~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 155 (195)
T 3nz2_A 78 RIGDHTFINMNVVMLDGAPITIGDHVLIG--PSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGA 155 (195)
T ss_dssp EECTTCEECTTEEEECSSCEEECTTCEEC--TTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECT
T ss_pred EECCCcEECcCCEEecCceEEECCCCEEC--CCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECC
Confidence 3555555555555532 34677777777 556542 357888888888888888888888
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
+|+||+++++.+.
T Consensus 156 ~~vIgagsvV~~d 168 (195)
T 3nz2_A 156 RSVVAANSVVNQD 168 (195)
T ss_dssp TCEECTTCEECSC
T ss_pred CCEECCCCEEccc
Confidence 8888888888654
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-10 Score=91.49 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=53.7
Q ss_pred CccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEEC
Q 020113 240 SKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILG 298 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~ 298 (331)
..|+++++|+++++|.+ .+.||++|.|+ +++.|. .++||++|+||.+|.|..++.||
T Consensus 75 ~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig--~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG 152 (199)
T 3ftt_A 75 VKLGKNVYVNTNCYFMDGGQITIGDNVFIG--PNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIG 152 (199)
T ss_dssp EEECSSEEECTTEEEECSSCEEECSSEEEC--TTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEEC
T ss_pred cEECCCeEECCCeEEecCCEEEECCCCEEC--CCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEEC
Confidence 34566666666666643 36778888888 667772 34799999999999998889999
Q ss_pred CCcEECcccEEcCc
Q 020113 299 EDVHVADEVYSNGA 312 (331)
Q Consensus 299 ~~~~i~~~~~i~~~ 312 (331)
++|.||+++++.+.
T Consensus 153 ~~~vIgagsvV~~d 166 (199)
T 3ftt_A 153 EGSVIGAGSVVTKD 166 (199)
T ss_dssp TTCEECTTCEECSC
T ss_pred CCCEECCCCEECcc
Confidence 99999999998654
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=93.29 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=23.5
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCC----CCceEe-CCEEcCCCEECCCcEEccceEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPD----KHACIS-SSIIGWHSTVGRWARVENMTIL 297 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~----~~~~i~-~s~i~~~~~ig~~~~i~~~~~i 297 (331)
|++++.|.+++.|++++.|+++|.|+++ +++.|. +++|..++.||++|.|..+++|
T Consensus 3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 63 (259)
T 3hsq_A 3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVI 63 (259)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEE
T ss_pred cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEE
Confidence 3444444444444444444444444311 334442 3444444444444444444444
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8.6e-10 Score=97.78 Aligned_cols=57 Identities=28% Similarity=0.234 Sum_probs=36.1
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
..|++++.|+++++|+ +|+|++++.|+ ++++|.+++|+++|.|+.++.+.++|.|++
T Consensus 84 ~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~--~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~ 140 (334)
T 2pig_A 84 CTLYNNVRIGDNVWID-RADISDGARIS--DNVTIQSSSVREECAIYGDARVLNQSEILA 140 (334)
T ss_dssp CEEESSCEECTTCEEE-SCEEESSCEEC--TTCEEESCEEESSEEECTTCEEESSCEEEC
T ss_pred eeECCCcEECCCCEEE-eEEEcCCCEEe--CCcEEeccEEcCCeEEecCCEEeCCEEEee
Confidence 3445555555555554 55666666666 678888887777777777666665555433
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=87.99 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=61.6
Q ss_pred ccCCCceEecc--eEEcCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEc------------------cceEE
Q 020113 241 KLATGSNIIGN--VLVHEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVE------------------NMTIL 297 (331)
Q Consensus 241 ~i~~~~~i~~~--~~i~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~------------------~~~~i 297 (331)
.+++++.|.++ +.++.++.||+++.|+ .+++|. +.+||++|.||++|.|. ..++|
T Consensus 56 ~~g~~~~I~~p~~~~~g~~v~IG~~~~i~--~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~I 133 (185)
T 2p2o_A 56 STGERLFIEPNFRCDYGYNIHVGENFFMN--FDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVI 133 (185)
T ss_dssp BCCSCEEECSCEEESCSTTEEECTTEEEC--SSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEE
T ss_pred ccCCCcEEeccEEEEecCCEEECCeeEEc--CCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEE
Confidence 36777888875 4456788888888888 678773 57899999999999883 24788
Q ss_pred CCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 298 GEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 298 ~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
|++|.||.++.|. ++.|+++++|+++.
T Consensus 134 Gd~v~IG~~~~I~~gv~IG~~~vIgags 161 (185)
T 2p2o_A 134 GHNVWIGGRAVINPGVTIGDNAVIASGA 161 (185)
T ss_dssp CSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred cCCeEECCCCEECCCCEECCCCEECCCC
Confidence 8888888888874 66666666666554
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=88.50 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=23.6
Q ss_pred cCCCceEecceE--EcCCcEECCCcEECCCCCceEeC---CEEcCCCEECCCcEE
Q 020113 242 LATGSNIIGNVL--VHEGAKIGDGCLIGPDKHACISS---SIIGWHSTVGRWARV 291 (331)
Q Consensus 242 i~~~~~i~~~~~--i~~~~~i~~~~~I~~~~~~~i~~---s~i~~~~~ig~~~~i 291 (331)
+++++.|.+++. ++.++.||++|.|+ .+++|.+ .+||++|.||++|.|
T Consensus 58 ig~~~~I~~~~~~~~g~~i~IG~~~~I~--~~~~i~~~~~i~IG~~v~Ig~~v~I 110 (203)
T 1krr_A 58 VGENAWVEPPVYFSYGSNIHIGRNFYAN--FNLTIVDDYTVTIGDNVLIAPNVTL 110 (203)
T ss_dssp CCSSCEECSCEEESCSTTEEECSSCEEC--SCEEEECSSCEEECSSCEECSSCEE
T ss_pred cCCCcEEcCCeEEEeCCCeEECCeeEEC--CccEEecccceEECCCCEECCCCEE
Confidence 455555555432 24455555555555 4444432 345555555555544
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=93.07 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=59.5
Q ss_pred CccCCCceEecceEEcC---CcEECCCcEECCCCCceEeCC--------------------EEcCCCEECCCcEEccceE
Q 020113 240 SKLATGSNIIGNVLVHE---GAKIGDGCLIGPDKHACISSS--------------------IIGWHSTVGRWARVENMTI 296 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~~~i~~s--------------------~i~~~~~ig~~~~i~~~~~ 296 (331)
..|++++.|+++++|.. ++.||++|.|| .++.|.++ +||++|.||.+|.|..+++
T Consensus 106 v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig--~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~ 183 (252)
T 3jqy_B 106 VIIGRRTTIGAGFEVVTDKCNVTIGHDCMIA--RDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVS 183 (252)
T ss_dssp EEECTTCEECTTCEEECSSSEEEECTTCEEC--SSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCE
T ss_pred EEECCCCEECCCcEEEeCCCCeEECCCCEEc--CCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCE
Confidence 35778888888777766 77888888888 77777654 8999999999999999999
Q ss_pred ECCCcEECcccEEcCc
Q 020113 297 LGEDVHVADEVYSNGA 312 (331)
Q Consensus 297 i~~~~~i~~~~~i~~~ 312 (331)
||++|+||+++++.+.
T Consensus 184 IG~~~~IgagsvV~~~ 199 (252)
T 3jqy_B 184 VGSGSVIGYGSIVTKD 199 (252)
T ss_dssp ECTTCEECTTCEECSC
T ss_pred ECCCCEECCCCEECcc
Confidence 9999999999999643
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=102.51 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=60.8
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
..|++++.|+++++|+ ++.||++|.|+ +++.|.+++||++|.||++|+|..+++|+++++||+++.+.++.+++++.
T Consensus 287 ~~ig~~~~I~~~~~i~-~~~Ig~~~~I~--~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~ 363 (459)
T 4fce_A 287 VILGDRVRIGTGCVLK-NCVIGDDSEIS--PYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSK 363 (459)
T ss_dssp EEECTTCEECTTCEEE-SCEECTTCEEC--SSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTTCE
T ss_pred eEECCCCEECCCCEEe-ccEECCCCEEC--CCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCCCE
Confidence 4556666666666665 57777888888 78999899999999999999999779999999999988876665555543
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=96.86 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=26.9
Q ss_pred eEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 247 NIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.|++++.|+++++|+++|.|| +++.|. +++|+++|.||++|.|..+++|+.+++||++|.|
T Consensus 138 ~Ig~~~~I~~~~~I~~~~~IG--~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I 199 (374)
T 2iu8_A 138 IIEDHVCIEPYAVVCQHAHVG--SACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVII 199 (374)
T ss_dssp EECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEE
T ss_pred EECCCCEECCCCEECCCCEEC--CCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEE
Confidence 333333333334444444444 444443 3444444444444444433444444444444444
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=89.24 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=53.1
Q ss_pred CccCCCceEecceEEcC---CcEECCCcEECCCCCceE----eCCEEcCCCEECCCcEEccc------------------
Q 020113 240 SKLATGSNIIGNVLVHE---GAKIGDGCLIGPDKHACI----SSSIIGWHSTVGRWARVENM------------------ 294 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~~~i----~~s~i~~~~~ig~~~~i~~~------------------ 294 (331)
..|++++.|++++++.. ++.||++|.|+ +.+.+ .+++||++|.||++|+|.+.
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig--~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~ 136 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMG--NGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGK 136 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEEC--SEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCC
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEEC--CEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCC
Confidence 45677777777666652 37777777777 53444 35677777777777777752
Q ss_pred -eEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 295 -TILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 295 -~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
++||++|.||.+++|. ++.|+++++|+++.
T Consensus 137 ~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgags 168 (215)
T 2wlg_A 137 DVIIGNHVWLGRNVTILKGVCIPNNVVVGSHT 168 (215)
T ss_dssp CEEECTTCEECTTCEECTTCEECSSCEECTTC
T ss_pred CeEECCCcEECCCCEECCCCEECCCCEECCCC
Confidence 4677777777777663 55555555555443
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-09 Score=90.64 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=22.8
Q ss_pred cEE--EEeCCeeccccHHHHHHHHhhcC
Q 020113 104 PFF--VLNSDVISEYPLKQMIEFHRGRG 129 (331)
Q Consensus 104 ~~l--v~~~D~i~~~~l~~~l~~~~~~~ 129 (331)
|+| ++.+|.+...+|.+++.+|...+
T Consensus 21 P~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 21 PMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 888 89999999999999999987654
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=91.31 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
+++||++|.||.+|.|.+++.||++|+||++++|...
T Consensus 119 ~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d 155 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN 155 (220)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred CeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc
Confidence 4668888888888888877888888888888888643
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=101.15 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCceEeCCEEcCCCEECCCcEEcc-------ceEECCCcEECcccEE
Q 020113 270 KHACISSSIIGWHSTVGRWARVEN-------MTILGEDVHVADEVYS 309 (331)
Q Consensus 270 ~~~~i~~s~i~~~~~ig~~~~i~~-------~~~i~~~~~i~~~~~i 309 (331)
+.+.+.+|+||++|.||.+|.+.+ .++||++|+||.++.|
T Consensus 380 ~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l 426 (501)
T 3st8_A 380 HLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMF 426 (501)
T ss_dssp ESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEE
T ss_pred ccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEE
Confidence 334444455555555555555433 2555566666555554
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=99.90 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=42.5
Q ss_pred cEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 258 AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
+.||++|.|+ ++.|.+++||++|.||+++.|..+++||++|.||+++.+.+++|++++.
T Consensus 310 ~~ig~~~~i~---~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~ 368 (468)
T 1hm9_A 310 STIGAGAVIT---NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTK 368 (468)
T ss_dssp CEECTTCEEC---SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCE
T ss_pred cEEeCCcEEE---EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcE
Confidence 3344444443 3556678899999999999998669999988888888877666655544
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-09 Score=86.35 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=50.0
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|..+++|.. .+.||++|.|+ .++.|. .++||++|+||.+|.|..++.||+
T Consensus 77 ~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig--~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 154 (203)
T 1krr_A 77 HIGRNFYANFNLTIVDDYTVTIGDNVLIA--PNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_dssp EECSSCEECSCEEEECSSCEEECSSCEEC--SSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred EECCeeEECCccEEecccceEECCCCEEC--CCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECC
Confidence 3455555554444432 25677777777 555542 468999999999999998899999
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
+|+||+++++...
T Consensus 155 ~~vIgagsvV~~d 167 (203)
T 1krr_A 155 NSVIGAGSIVTKD 167 (203)
T ss_dssp TCEECTTCEECSC
T ss_pred CCEECCCCEECCC
Confidence 9999999998654
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-09 Score=100.53 Aligned_cols=74 Identities=22% Similarity=0.285 Sum_probs=56.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccC
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPH 317 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 317 (331)
.|++++.|+++++|. ++.||++|.|+ +++.|.+++||++|.||++++|..+++||++|.||+++.+.++.++++
T Consensus 285 ~Ig~~~~I~~~~~i~-~~~ig~~~~I~--~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~ 358 (456)
T 2v0h_A 285 KLGDRVKIGTGCVLK-NVVIGNDVEIK--PYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKG 358 (456)
T ss_dssp EECTTCEECTTCEEE-EEEECTTCEEC--SSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCEECTT
T ss_pred EECCCCEECCCCEEE-eEEEeCCCEEc--CCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccEECCC
Confidence 345555555555554 55567777788 778888899999999999999997799999999999888865554444
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.4e-09 Score=86.34 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=34.3
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
+++||++|.||.+|.|.+++.||++|+||.++++... |.++++
T Consensus 111 ~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d-Vp~~~v 153 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD-VAPYEV 153 (212)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC-BCTTEE
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc-cCCCcE
Confidence 4789999999999999988999999999999998643 334433
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.6e-09 Score=89.77 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=23.2
Q ss_pred cEE--EEeCCeeccccHHHHHHHHhhcC
Q 020113 104 PFF--VLNSDVISEYPLKQMIEFHRGRG 129 (331)
Q Consensus 104 ~~l--v~~~D~i~~~~l~~~l~~~~~~~ 129 (331)
|+| ++++|.+...+|.+++.++...+
T Consensus 41 P~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 41 PMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp GGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 899 99999999999999999987655
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-09 Score=92.44 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=10.6
Q ss_pred CCCceEecceEEcCCcEECCCcEEC
Q 020113 243 ATGSNIIGNVLVHEGAKIGDGCLIG 267 (331)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~I~ 267 (331)
++++.|+|.++|+.++.||++|+|+
T Consensus 182 ~~gv~I~P~AvI~~GA~IGeGv~Ig 206 (347)
T 3r5d_A 182 PAGVRIADTARVRLGAYIGEGTTVM 206 (347)
T ss_dssp CTTEEESSGGGBBTTEEECTTEEEC
T ss_pred cCCcEECCcCEECCCCEECCCCEEC
Confidence 3444444444444444444444444
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=96.42 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEcc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLP 316 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~ 316 (331)
...|+++|+| +++.|+ +|+||++|.|| ++|.|.+|+|+++|.||++|.|.+ |+||++|.||++++|.+....|
T Consensus 324 ~~~ig~~~~I-~~~~i~-~~~ig~~~~I~--~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~~~~~~ 396 (420)
T 3brk_X 324 SSVVSGDCII-SGAALN-RSLLFTGVRAN--SYSRLENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELD 396 (420)
T ss_dssp SCEECSSCEE-ESCEEE-SCEECTTCEEC--TTCEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEESSCHHHH
T ss_pred CCEECCCCEE-cCCEEe-CcEEcCCCEEC--CCCEEcceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeCCCCCC
Confidence 3455666666 566664 69999999999 889999999999999999999998 9999999999999997554433
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=94.54 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=56.9
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCC-------------------CEECCCcEEccceEECCC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWH-------------------STVGRWARVENMTILGED 300 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~-------------------~~ig~~~~i~~~~~i~~~ 300 (331)
..|+++|.|.+ +.|. +++||++|.|| ++++|.++++..+ +.||.+|.|.+ ++||++
T Consensus 331 ~~Ig~~~~I~~-~~i~-~~~Ig~~~~Ig--~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~-~~Ig~~ 405 (451)
T 1yp2_A 331 SVIGEGCVIKN-CKIH-HSVVGLRSCIS--EGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKR-AIIDKN 405 (451)
T ss_dssp EEECTTCEEEE-EEEE-SCEECTTCEEC--TTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEES-EEECTT
T ss_pred eEECCCCEEcc-eEEe-ccEECCCCEEC--CCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEec-cEeCCC
Confidence 45667777765 6666 89999999999 8899998888777 99999999988 999999
Q ss_pred cEECcccEEcC
Q 020113 301 VHVADEVYSNG 311 (331)
Q Consensus 301 ~~i~~~~~i~~ 311 (331)
|.||+|++|.+
T Consensus 406 ~~IG~~~~i~~ 416 (451)
T 1yp2_A 406 ARIGDNVKIIN 416 (451)
T ss_dssp CEECTTCEECC
T ss_pred cEECCCCEEeC
Confidence 99999999864
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=87.58 Aligned_cols=49 Identities=29% Similarity=0.427 Sum_probs=39.1
Q ss_pred cEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 258 AKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+.||++|.|+ .+++|.. ++||++|.||.+++| + +.||++|+||+|++|.
T Consensus 208 v~IGd~v~Ig--pGa~IgG~~~~~~~~~V~IGDnv~IGanAtI-g-VtIGd~~iIGAGSVVt 265 (332)
T 3fsy_A 208 VVVGDGSDVG--GGASIMGTLSGGGTHVISIGKRCLLGANSGL-G-ISLGDDCVVEAGLYVT 265 (332)
T ss_dssp CEECTTCEEC--TTCEECSBCC---CCBCEECTTCEECTTCEE-C-SCBCSSCEECTTCEEC
T ss_pred eEECCCCEEC--CCCEEcCCCCCCCccceEECCCCEECCCCEE-e-eEECCCCEECCCCEEC
Confidence 4677777777 6677753 888888888888888 5 8888888888888884
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=84.74 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=17.6
Q ss_pred eEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 295 TILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
++||++|.||.+|+|. ++.|+++++|+++.
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgags 150 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEA 150 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCC
Confidence 6677777777666663 45555555555443
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=83.33 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=56.9
Q ss_pred CccCCCceEecceEEc---CCcEECCCcEECCCCCceEeC--------------------CEEcCCCEECCCcEEccceE
Q 020113 240 SKLATGSNIIGNVLVH---EGAKIGDGCLIGPDKHACISS--------------------SIIGWHSTVGRWARVENMTI 296 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~---~~~~i~~~~~I~~~~~~~i~~--------------------s~i~~~~~ig~~~~i~~~~~ 296 (331)
..|++++.|++.+++. .++.||++|.|+ .++.|.+ ++||++|+||.++.|..++.
T Consensus 80 ~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig--~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~ 157 (215)
T 2wlg_A 80 LQIQAKTTMGNGEITIAEKGKISIGKDCMLA--HGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVC 157 (215)
T ss_dssp EEECTTCEECSEEEEECTTCEEEECTTCEEC--TTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCE
T ss_pred EEEcCCCEECCEEEEEeCCCCEEECCCCEEc--CCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCE
Confidence 4677888887755543 467788888888 6677764 48999999999999998899
Q ss_pred ECCCcEECcccEEcCc
Q 020113 297 LGEDVHVADEVYSNGA 312 (331)
Q Consensus 297 i~~~~~i~~~~~i~~~ 312 (331)
||++|.|++++++...
T Consensus 158 Ig~~~vIgagsvV~~~ 173 (215)
T 2wlg_A 158 IPNNVVVGSHTVLYKS 173 (215)
T ss_dssp ECSSCEECTTCEECSC
T ss_pred ECCCCEECCCCEEcCc
Confidence 9999999999999743
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.5e-08 Score=88.65 Aligned_cols=305 Identities=13% Similarity=0.167 Sum_probs=165.0
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC-CcchHHHHHHHHHHc----C--CCEEEEEeccChHHHHHHHHHhhhccCeE
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV----G--VTEVVLAINYQPEVMLNFLKEFEKKLEIK 74 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 74 (331)
.+|+||||.|+||+- ..||.++|+. |+++++..++++.+. | +..+++.+....+.+++++++. ..++..
T Consensus 129 avvlLaGGlGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~-~~fg~~ 204 (528)
T 3r3i_A 129 VVVKLNGGLGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY-NHCRVK 204 (528)
T ss_dssp EEEEECCCBCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG-TTSSCC
T ss_pred EEEEeCCCCccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc-CccCCC
Confidence 468889999999976 7899999995 899999999988865 3 6666776667778899988873 223333
Q ss_pred EEEeeC---------------------------CcccCChH--HHHH---HHhhccCCCCCcEEEEeCCeeccccHHHHH
Q 020113 75 ITCSQE---------------------------TEPLGTAG--PLAL---ARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122 (331)
Q Consensus 75 v~~~~~---------------------------~~~~G~~~--al~~---~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l 122 (331)
+.+..| ..|.|.++ ..+. .++.+....-+++.+.+.|.+....-..++
T Consensus 205 V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~L 284 (528)
T 3r3i_A 205 IYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYIL 284 (528)
T ss_dssp EEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHHH
T ss_pred eEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHHH
Confidence 333222 12445443 3222 233333333348999999996433233456
Q ss_pred HHHhhc----CCceEEE----ecCCCCceEEEEcCCcCceeEeeecCCCC--------CCCeEEEEEEEEChhhHhhcc-
Q 020113 123 EFHRGR----GGEASIM----VDEPSKYGVVVMEETTGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIE- 185 (331)
Q Consensus 123 ~~~~~~----~~~~~i~----~~~~~~~~~v~~d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l~- 185 (331)
..+.+. ++++.+- ......-|.+...+..-.+.++.|-|++. .-.+.++....|+-+.++.+.
T Consensus 285 g~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~ 364 (528)
T 3r3i_A 285 NHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQE 364 (528)
T ss_dssp HHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHHHH
T ss_pred HHHHhcccccCCcEEEEEeEccccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHHHH
Confidence 666665 6676654 12223445555433213455555443321 113578889999988876551
Q ss_pred cCCC------------------Cccc---chHHHHHhcCcEEEEEe-CceEEecCCHHHHHHHHHHHHhhhccccCCccC
Q 020113 186 LKPT------------------SIEK---EVFPEIAAENKLFAMVL-PGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLA 243 (331)
Q Consensus 186 ~~~~------------------~~~~---~~l~~l~~~~~i~~~~~-~~~~~~i~t~~d~~~a~~~~l~~~~~~~~~~i~ 243 (331)
.... .+|. ++++.. .+..++.+ ...|..+-+..|++.....+..-.. ......
T Consensus 365 ~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f---~~~~~i~VpR~rF~PvKn~sdLll~~Sdly~l~~--g~l~~~ 439 (528)
T 3r3i_A 365 QNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF---ENSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNA--GSLTMS 439 (528)
T ss_dssp TTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS---SSCCCEECCGGGCCBCCSHHHHHHHHSTTSEEET--TEEECC
T ss_pred hCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc---cCcEEEEEehHHcccccchHHHHHHhcceeEeeC--CeEEec
Confidence 1100 0111 111111 12223333 2238888999988866543221110 000000
Q ss_pred CCc--eEecceEEcCCcEECCCcEECCC------CCceEe--CCEEcCCCEECCCcEEccceEE----CCCcEECcccEE
Q 020113 244 TGS--NIIGNVLVHEGAKIGDGCLIGPD------KHACIS--SSIIGWHSTVGRWARVENMTIL----GEDVHVADEVYS 309 (331)
Q Consensus 244 ~~~--~i~~~~~i~~~~~i~~~~~I~~~------~~~~i~--~s~i~~~~~ig~~~~i~~~~~i----~~~~~i~~~~~i 309 (331)
+.. -.-|-+.+++. ...|... --+.++ .-+|..+++.|.++++.+.++| |+...|-+|+++
T Consensus 440 ~~r~~~~~P~v~L~~~-----~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~l 514 (528)
T 3r3i_A 440 EKREFPTVPLVKLGSS-----FTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVL 514 (528)
T ss_dssp SSCSSCCCCEEEECTT-----SCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTCEEECCTTCEE
T ss_pred ccccCCCCCEEEeCcc-----cCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCCceecCCCCEE
Confidence 100 01122333221 0111000 011222 3456777888888888886777 455789999999
Q ss_pred cCcEEccCeEE
Q 020113 310 NGAVVLPHKEI 320 (331)
Q Consensus 310 ~~~~v~~~~~i 320 (331)
.|.+|.++..|
T Consensus 515 en~~v~g~~~~ 525 (528)
T 3r3i_A 515 ENKIVSGNLRI 525 (528)
T ss_dssp EEEEEC-----
T ss_pred eccEEeccccc
Confidence 99988877655
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=84.78 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=40.0
Q ss_pred cCCcEECCCcEECCCCCce----EeC-----CEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEc
Q 020113 255 HEGAKIGDGCLIGPDKHAC----ISS-----SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVL 315 (331)
Q Consensus 255 ~~~~~i~~~~~I~~~~~~~----i~~-----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~ 315 (331)
+.+++||++|.|+ .++. +.+ ++||++|.||.+|. .+ +.||++|+||++++|. ++.+.
T Consensus 262 g~~vvIGdnv~Ig--~ga~I~g~l~g~~~~~VvIGdnv~IGagAv-~G-V~IGdgavIGAGsVVt~dv~i~ 328 (387)
T 2rij_A 262 SSSAIVGEGSDVG--GGASILGVLSGTSGNAISVGKACLLGANSV-TG-IPLGDNCIVDAGIAVLEGTKFL 328 (387)
T ss_dssp CTTCEECTTCEEC--TTCEECCBCSSTTCCBCEECTTCEECTTCE-EC-SCBCTTCEECTTCEECTTCEEE
T ss_pred CCCCEECCCCEEC--CCceEcceecCCCccCeEEeCCCEECCCCc-CC-cEECCCCEECCCCEECCCceee
Confidence 3455566666666 5564 333 68888888888888 44 8888888888888885 44444
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-07 Score=77.15 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
+++||++|.||.++.|.+++.||++++||.++.+..
T Consensus 118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~ 153 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK 153 (219)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 467777788888877777777888888888777754
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-07 Score=76.07 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=27.9
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
+++||++|.||.++.|.+++.||+++.||.++.+...
T Consensus 113 ~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~ 149 (209)
T 1mr7_A 113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD 149 (209)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred CcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 3667888888888888777888888888888877643
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-07 Score=76.30 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=23.8
Q ss_pred ECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccCccCCc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~~~ 328 (331)
++..++|+++|.||.+++|..+++| .+|+|+.++++..++...+
T Consensus 108 ~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~ 152 (212)
T 3eev_A 108 RSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYE 152 (212)
T ss_dssp CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred cCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCc
Confidence 3344455555555555555555555 3566666666666655433
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8e-07 Score=73.66 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=32.6
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
.++||++|.||.+|.|..++.||++|+||.++++... |.++++
T Consensus 110 ~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~-vp~~~~ 152 (212)
T 1xat_A 110 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD-VEPYAI 152 (212)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC-BCTTEE
T ss_pred CeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc-CCCCcE
Confidence 4778888888888888878888888888888888653 334433
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-07 Score=74.62 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=14.1
Q ss_pred eEECCCcEECcccEEc-CcEEccCeEEcc
Q 020113 295 TILGEDVHVADEVYSN-GAVVLPHKEIKS 322 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~ 322 (331)
++||++|.||.++.|. ++.|+++++|++
T Consensus 119 v~Igd~v~IG~~a~I~~gv~IG~~~~Iga 147 (219)
T 4e8l_A 119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAA 147 (219)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECT
T ss_pred cEECCCeEECCCCEEcCCCEECCCCEECC
Confidence 5555555555555553 344444444443
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-06 Score=76.79 Aligned_cols=301 Identities=14% Similarity=0.121 Sum_probs=162.3
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHHc------CCCEEEEEeccChHHHHHHHHHhhhccCe--
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEKKLEI-- 73 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~------gi~~i~iv~~~~~~~i~~~~~~~~~~~~~-- 73 (331)
+|+||||.|+||+- ..||.++|+ .|+++++..++++... .+--+++.+....+.+++++++.. .++.
T Consensus 79 vvlLaGGlGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~-~Fgl~~ 154 (484)
T 3gue_A 79 VLKLNGGLGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYP-TLYEVF 154 (484)
T ss_dssp EEEEECCCCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCH-HHHTTC
T ss_pred EEEEcCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCc-ccCCCc
Confidence 67889999999976 679999999 7889999999887753 355666666666788999998721 1111
Q ss_pred -EEEEeeC-----------------------CcccCChHH--HHH---HHhhccCCCCCcEEEEeCCeeccccHHHHHHH
Q 020113 74 -KITCSQE-----------------------TEPLGTAGP--LAL---ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEF 124 (331)
Q Consensus 74 -~v~~~~~-----------------------~~~~G~~~a--l~~---~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~ 124 (331)
.+.+..| ..|.|.++- .+. .++.+....-+++.+.+.|.+...--..++..
T Consensus 155 ~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~lG~ 234 (484)
T 3gue_A 155 DSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDY 234 (484)
T ss_dssp CCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHHHHH
T ss_pred cceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHHHHH
Confidence 1111111 123455442 221 23333333333899999999654333567788
Q ss_pred HhhcCCceEEE-e--cC-CCCceEEEEc---------CCcCc--eeEeeecCCC--------CCCCeEEEEEEEEChhhH
Q 020113 125 HRGRGGEASIM-V--DE-PSKYGVVVME---------ETTGK--VEKFVEKPKN--------FVGNKINAGIYLLNPSVL 181 (331)
Q Consensus 125 ~~~~~~~~~i~-~--~~-~~~~~~v~~d---------~~~~~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l 181 (331)
+.++++++.+- + .+ ...-|.+... .+ |+ +.++.|-|.+ ....+.+++-..++-..+
T Consensus 235 ~~~~~~d~~~kvv~Kt~~dekgG~l~~~~~~~~~~~~~d-G~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~~l~~l 313 (484)
T 3gue_A 235 MHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTR-RRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWINLMEL 313 (484)
T ss_dssp HHHTTCSEEEEEEECCTTCCSSEEEEEEC--------CC-CEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEEEHHHH
T ss_pred HHhcCCCEEEEEEECCCCCCceeEEEEEccccccccCCC-CCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEEEHHHH
Confidence 88888888766 2 22 2355644443 12 43 4555443321 122466888888887766
Q ss_pred hhc-ccC--CC----------------------Cccc---chHHHHHhcCcEEEEEe-CceEEecCCHHHHHHHHHHHHh
Q 020113 182 DRI-ELK--PT----------------------SIEK---EVFPEIAAENKLFAMVL-PGFWMDIGQPKDYITGLRLYLD 232 (331)
Q Consensus 182 ~~l-~~~--~~----------------------~~~~---~~l~~l~~~~~i~~~~~-~~~~~~i~t~~d~~~a~~~~l~ 232 (331)
+.+ +.. .. .+|. ++++.+ .+..++++ ...|..+-+..|++.....+..
T Consensus 314 ~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~PvKn~sdLl~~~Sdly~ 390 (484)
T 3gue_A 314 KKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFAPVKTCSDLLALRSDAYQ 390 (484)
T ss_dssp HHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCCCCSSHHHHHHHHSTTEE
T ss_pred HHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhccccccchHHHHHhhhcee
Confidence 433 111 00 0111 122221 24445544 3357788888887766433221
Q ss_pred hhccccCCccCCC-ceEecceEEcCCcEECCCcEECCC----CC---ceE--eCCEEcCCCEECCCcEEccceEE----C
Q 020113 233 FLQKNSSSKLATG-SNIIGNVLVHEGAKIGDGCLIGPD----KH---ACI--SSSIIGWHSTVGRWARVENMTIL----G 298 (331)
Q Consensus 233 ~~~~~~~~~i~~~-~~i~~~~~i~~~~~i~~~~~I~~~----~~---~~i--~~s~i~~~~~ig~~~~i~~~~~i----~ 298 (331)
+.........+. ....|.+.+++.- ...|+.. .+ +.+ ..-+|..+++.|.++++.+.++| |
T Consensus 391 -l~~~~~l~~~~~~~~~~P~v~L~~~~----~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~g 465 (484)
T 3gue_A 391 -VTEDQRLVLCEERNGKPPAIDLDGEH----YKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKE 465 (484)
T ss_dssp -ECTTSCEEECGGGTTCCCEEEECTTT----SSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECSS
T ss_pred -ccCCceEEeccccCCCCCeEEECchh----cCcHHHHHHhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCCC
Confidence 010000000000 0112333332210 1111100 11 111 22346677888888888876666 4
Q ss_pred CCcEECcccEEcCcEEcc
Q 020113 299 EDVHVADEVYSNGAVVLP 316 (331)
Q Consensus 299 ~~~~i~~~~~i~~~~v~~ 316 (331)
+...|-+|+++.+.+|.+
T Consensus 466 ~~~~ip~g~~l~~~~~~~ 483 (484)
T 3gue_A 466 EPLIIGSGRVLDNEVVVV 483 (484)
T ss_dssp SCEEECTTCEEESCEEEE
T ss_pred CeeecCCCCEecceecCC
Confidence 557899999998877653
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.8e-06 Score=69.49 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=16.6
Q ss_pred cEEccceEECCCcEECcccEE-cCcEEccCeEEccCccC
Q 020113 289 ARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 289 ~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~ 326 (331)
++|+++|.||.+++|..+++| .+++|+.++++..++..
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~ 152 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAP 152 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCT
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCC
Confidence 333333333333333334444 24555555555555443
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-05 Score=62.96 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=23.6
Q ss_pred CEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccCccCC
Q 020113 283 STVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 283 ~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~~ 327 (331)
+.+...++|+++|.||.++.|..+++| .+|+|+.++++.+++...
T Consensus 105 ~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~ 150 (212)
T 1xat_A 105 YQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPY 150 (212)
T ss_dssp CCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTT
T ss_pred ceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCC
Confidence 334444455555555555555555555 356666666666655443
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=97.81 E-value=2e-05 Score=65.30 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=71.0
Q ss_pred CeEEEEe--CCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEE-EEEeccChHHHHHHHHHhhhccCeEEEE
Q 020113 1 MKALILV--GGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEV-VLAINYQPEVMLNFLKEFEKKLEIKITC 77 (331)
Q Consensus 1 m~avIlA--~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i-~iv~~~~~~~i~~~~~~~~~~~~~~v~~ 77 (331)
|.+||++ +..-|||.+ .+.+......++||++|+++.+..++++.+ +++++... .. .+ ++..+
T Consensus 4 ~~~vip~k~g~~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~--~~----~~---~~~~~-- 69 (211)
T 2i5e_A 4 MRAVIPYKKAGAKSRLSP---VLSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG--LE----EM---TEARV-- 69 (211)
T ss_dssp CEEEEECCCTTTTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT--CS----SC---CSSEE--
T ss_pred eEEEEEeCCCCCccccCc---cCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH--HH----hh---cCCEE--
Confidence 6789999 556677743 222222236689999999999999988898 88876542 11 11 24444
Q ss_pred eeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHH
Q 020113 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIE 123 (331)
Q Consensus 78 ~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~ 123 (331)
+.+. .|.++++..+.+... + .++++.||+ +....+..+++
T Consensus 70 v~~~--~gl~~sl~~a~~~~~-~---~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 70 LLDE--KDLNEALNRYLKEAE-E---PVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp EECC--SCHHHHHHHHHHHCC-S---CEEEECSCCTTCCHHHHHHHTT
T ss_pred EECC--CCHHHHHHHHHHhcC-C---CEEEEcCCcCCCCHHHHHHHHc
Confidence 3333 688899998887762 2 899999999 44555777766
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00079 Score=63.57 Aligned_cols=130 Identities=14% Similarity=0.211 Sum_probs=85.7
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHc-C--CCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV-G--VTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~-g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
-+|+||||.|+||+- ..||.++|+. |++++++.++++.+. | +..+++.+....+.+.+++++++-.. ..+
T Consensus 116 avvllaGGlGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl~~-~~V 191 (630)
T 3ogz_A 116 VFVLVAGGLGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLEV-PNL 191 (630)
T ss_dssp EEEEECCCEEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTCCC-TTE
T ss_pred eEEEecCCcccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCCCc-ccE
Confidence 367889999999986 6799999996 999999999988863 3 55666666677789999999854211 112
Q ss_pred EEeeCC----------------------cccCChHHH--HH---------------------HHhhccCCCCCcEEEEeC
Q 020113 76 TCSQET----------------------EPLGTAGPL--AL---------------------ARDKLIDDSGEPFFVLNS 110 (331)
Q Consensus 76 ~~~~~~----------------------~~~G~~~al--~~---------------------~~~~~~~~~~~~~lv~~~ 110 (331)
.+..|. .|.|.++-. +. .++.+....-+++.+.+.
T Consensus 192 ~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~v 271 (630)
T 3ogz_A 192 HVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQD 271 (630)
T ss_dssp EEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECT
T ss_pred EEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEcc
Confidence 221110 144554422 21 234443333338889999
Q ss_pred Ceec-cccHHHHHHHHhhcCCceEEE
Q 020113 111 DVIS-EYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 111 D~i~-~~~l~~~l~~~~~~~~~~~i~ 135 (331)
|.+. ...-..++-.+.++++++.+-
T Consensus 272 DN~L~~~~DP~~lG~~~~~~~d~~~k 297 (630)
T 3ogz_A 272 TNAGATITIPISLALSAEHSLDMNFT 297 (630)
T ss_dssp TBTTHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCccccccCHHHhHHHHhcCCCEEEE
Confidence 9944 333344777888888887666
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.019 Score=48.21 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=60.1
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHH---HHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVM---LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i---~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~l 106 (331)
-++|+.++++.+...+...++++++...... .... . .+ +.+..+ ...|.+.++..+...+.....+.++
T Consensus 36 ~~~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~-~----~~--~~~~~q-~~~gLg~rl~~a~~~~~~~~~~~vl 107 (242)
T 3cgx_A 36 YRHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWL-G----PQ--HMFAAQ-QGLDLGERMKHAMQKAFDDGYDRVV 107 (242)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHH-C----TT--SEEEEC-CSSSHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhc-c----CC--cEEecC-CCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 3689999999999988777766665544332 2222 1 12 233333 4558889999888876222223899
Q ss_pred EEeCCe--eccccHHHHHHHHhh
Q 020113 107 VLNSDV--ISEYPLKQMIEFHRG 127 (331)
Q Consensus 107 v~~~D~--i~~~~l~~~l~~~~~ 127 (331)
++.+|+ +....+.++++...+
T Consensus 108 iigaD~P~L~~~~l~~a~~~l~~ 130 (242)
T 3cgx_A 108 LMGSDIPDYPCELVQKALNDLQH 130 (242)
T ss_dssp EECSSCTTCCHHHHHHHHHHTTT
T ss_pred EEcCCCCCCCHHHHHHHHHHhcc
Confidence 999999 667778988886543
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.44 Score=39.59 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=67.0
Q ss_pred ceeCCc-chHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC--------cccCChHHHHHHH
Q 020113 26 VDFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET--------EPLGTAGPLALAR 94 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~--------~~~G~~~al~~~~ 94 (331)
+|.-|+ ..|..+|+.+.+.... +++|+-+...+...+.++++... ..+.++..+ ...|.+.+...++
T Consensus 7 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~--~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi 84 (255)
T 1qg8_A 7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLND--NRVRFYQSDISGVKERTEKTRYAALINQAI 84 (255)
T ss_dssp EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGS--TTEEEEECCCCSHHHHHSSCHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhc--CCEEEEecccccccccccccCHHHHHHHHH
Confidence 344444 6899999999875432 56665554456677777775442 235555554 4667888888888
Q ss_pred hhccCCCCCcEEEEeCCeecccc-HHHHHHHHhhc
Q 020113 95 DKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGR 128 (331)
Q Consensus 95 ~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 128 (331)
+..+.+ .++++..|.+...+ +..+++.+.+.
T Consensus 85 ~~a~g~---~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 85 EMAEGE---YITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp HHCCCS---EEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred HHcCCC---EEEEeCCCCccChHHHHHHHHHHHhC
Confidence 887554 88899999976555 88888888765
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.38 Score=39.51 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=67.6
Q ss_pred ceeCCc-chHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ ..|..+|+.+.+.... +++|+-+...+...+.++++..+.. .+.++. .+..|.+.+...+++....+
T Consensus 11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~-~i~~i~-~~n~G~~~a~N~g~~~a~g~-- 86 (240)
T 3bcv_A 11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYP-NIKVIH-KKNAGLGMACNSGLDVATGE-- 86 (240)
T ss_dssp EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCS-SEEEEE-CCCCCHHHHHHHHHHHCCSS--
T ss_pred EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCC-CEEEEE-CCCCChHHHHHHHHHHcCCC--
Confidence 444454 6999999999875432 5666554333444555555433221 244444 34678888888888887654
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++..|.+...+ ++.+++.+.+.+.++.+.
T Consensus 87 -~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 87 -YVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp -EEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred -EEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 88999999976655 888888887755555443
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.68 Score=42.62 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=69.8
Q ss_pred ceeCCc--chHHHHHHHHHHcCC-C---EEEEEeccChH-HHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 26 VDFANK--PMILHQIEALKAVGV-T---EVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi-~---~i~iv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
+|.-|. ..|..+|+.+.+.-. . +|+||-+...+ ...+.++++..+.+..+.++..+...|.+.+...+++...
T Consensus 35 Ip~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~ 114 (472)
T 1xhb_A 35 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR 114 (472)
T ss_dssp EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc
Confidence 344455 589999999887542 2 67766543332 3555555543333334666666666788889988888876
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcCCce
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEA 132 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~ 132 (331)
.+ .++++..|.....+ ++.+++.+.+....+
T Consensus 115 gd---~i~flD~D~~~~p~~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 115 GQ---VITFLDAHCECTAGWLEPLLARIKHDRRTV 146 (472)
T ss_dssp SS---EEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred CC---eEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence 54 88899999976554 899999887665443
|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=1.5 Score=41.43 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=66.2
Q ss_pred ceeCCc--chHHHHHHHHHHcCC-C---EEEEEeccChHHH-HHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 26 VDFANK--PMILHQIEALKAVGV-T---EVVLAINYQPEVM-LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi-~---~i~iv~~~~~~~i-~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
+|.-|. ..|..+|+.+.+... . +|+||-+...+.. .+.+.++.... ..+.++......|.+.+...++....
T Consensus 118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~-~~v~vi~~~~n~G~~~A~N~G~~~A~ 196 (570)
T 2d7i_A 118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALF-PSVRILRTKKREGLIRTRMLGASVAT 196 (570)
T ss_dssp EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTS-TTEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhC-CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344565 488899998876432 2 6777654333222 45555543332 23555665667788999998888876
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcCC
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~ 130 (331)
.+ .++++..|.....+ |+.+++.+.+...
T Consensus 197 gd---~i~fLD~D~~~~p~~L~~ll~~l~~~~~ 226 (570)
T 2d7i_A 197 GD---VITFLDSHCEANVNWLPPLLDRIARNRK 226 (570)
T ss_dssp SS---EEEECCSSEEECTTCSHHHHHHHHHCTT
T ss_pred CC---EEEEEcCCccccccHHHHHHHHHHhCCC
Confidence 53 88899999966554 8888888776543
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=4.7 Score=38.37 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=68.0
Q ss_pred ceeCCc-chHHHHHHHHHHcC---CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDS 101 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g---i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~ 101 (331)
+|.-|. ..|..+|+.+.... .-+|+|+-+...+...+.+.++....++.+... .....|.+.+...++.....+
T Consensus 99 Ip~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~-~~~~~g~~~a~N~g~~~a~g~- 176 (625)
T 2z86_A 99 IPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQ-KDYGYQLCAVRNLGLRAAKYN- 176 (625)
T ss_dssp EEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEE-CCCSCCHHHHHHHHHHHCCSS-
T ss_pred EecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEe-CCCCcchhHHHHHHHHhCCcC-
Confidence 455566 68999999998763 346666665444556667776544334444322 223345677888888877543
Q ss_pred CCcEEEEeCCeecccc-HHHHHHHHhhcCCceEE
Q 020113 102 GEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASI 134 (331)
Q Consensus 102 ~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i 134 (331)
.++++.+|.....+ +..+++.+.+....+.+
T Consensus 177 --~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~ 208 (625)
T 2z86_A 177 --YVAILDCDMAPNPLWVQSYMELLAVDDNVALI 208 (625)
T ss_dssp --EEEEECTTEEECTTHHHHHHHHHHHCTTEEEE
T ss_pred --EEEEECCCCCCCHHHHHHHHHHHhcCCceEEE
Confidence 88899999976655 78888887765544433
|
| >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A | Back alignment and structure |
|---|
Probab=81.41 E-value=2.5 Score=36.79 Aligned_cols=100 Identities=11% Similarity=0.019 Sum_probs=62.7
Q ss_pred ceeCCc-chHHHHHHHHHHc--C-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee-CCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAV--G-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ-ETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~--g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~-~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|..|. ..|..+|+.+.+. . ..+|+|+-+...+...+.++++..+....+.++. .....|-+.++..++.....+
T Consensus 54 Ip~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~gd 133 (329)
T 3ckj_A 54 LPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGD 133 (329)
T ss_dssp EEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHHHHHHHCCCS
T ss_pred EeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeeccCCCCCCHHHHHHHHHHhCCCC
Confidence 444454 6899999998875 2 2577776654444555566654221100011111 345568888998888887553
Q ss_pred CCCcEEEEeCCee-cccc-HHHHHHHHhhc
Q 020113 101 SGEPFFVLNSDVI-SEYP-LKQMIEFHRGR 128 (331)
Q Consensus 101 ~~~~~lv~~~D~i-~~~~-l~~~l~~~~~~ 128 (331)
.++++.+|.. ...+ +..+++.+.+.
T Consensus 134 ---~i~~lD~D~~~~~p~~l~~l~~~l~~~ 160 (329)
T 3ckj_A 134 ---IVVFVDSDLINPHPMFVPWLVGPLLTG 160 (329)
T ss_dssp ---EEEECCTTEESCCTTHHHHHHHHHHSC
T ss_pred ---EEEEECCCCCCcChHHHHHHHHHHHhC
Confidence 8889999997 6554 88888875543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 331 | ||||
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 1e-55 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 4e-55 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 5e-46 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 1e-39 | |
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 2e-36 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 2e-22 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 6e-21 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 6e-16 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 2e-11 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 6e-10 | |
| d1vgwa_ | 226 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 4e-08 | |
| d1i52a_ | 225 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 1e-06 | |
| d1vpaa_ | 221 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 2e-06 | |
| d1w77a1 | 226 | c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- | 6e-06 | |
| d1fxja1 | 78 | b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha | 6e-05 | |
| d1w55a1 | 205 | c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, | 7e-05 | |
| d1vh1a_ | 246 | c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac | 8e-05 | |
| d1vica_ | 255 | c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac | 2e-04 | |
| d1e5ka_ | 188 | c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro | 9e-04 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 0.001 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 0.001 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 0.002 | |
| d1h7ea_ | 245 | c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac | 0.004 |
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 180 bits (459), Expect = 1e-55
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 15/235 (6%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRL P+T V K L+ +KPMI + + L G+ E+++ + +
Sbjct: 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + I++ +++ P G A + L + VL ++
Sbjct: 62 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGE--PSCLVLGDNIFFGQGFSP 119
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
+ R A++ V +P ++GVV + + EKPK N G+Y +
Sbjct: 120 KLRHVAARTEGATVFGYQVMDPERFGVVEF-DDNFRAISLEEKPKQPKSNWAVTGLYFYD 178
Query: 178 PSVLDRIE-LKPTSIEKE-----VFPEIAAENKLFAMVLP--GFWMDIGQPKDYI 224
V++ + +KP S E + L +L W+D G I
Sbjct: 179 SKVVEYAKQVKP-SERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLI 232
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 179 bits (456), Expect = 4e-55
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 15/235 (6%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + + + + P G A + + VL ++ + +
Sbjct: 62 FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGES--FIGNDLSALVLGDNLYYGHDFHE 119
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++ R AS+ V +P +YGVV + GK EKP N G+Y +
Sbjct: 120 LLGSASQRQTGASVFAYHVLDPERYGVVEF-DQGGKAISLEEKPLEPKSNYAVTGLYFYD 178
Query: 178 PSVLDRIE-LKPTSIEKE-----VFPEIAAENKLFAMVLP--GFWMDIGQPKDYI 224
V+D LKP S E V +L ++ W+D G +
Sbjct: 179 QQVVDIARDLKP-SPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLL 232
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 156 bits (395), Expect = 5e-46
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 13/234 (5%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK ++L GG GTRL P+T +V K L+ +KPMI + + L G+ ++++ + +
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + ++ + + EP G A + +D + D + VL +V + +
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSE 121
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++ A I V +P +GVV + G+V EKP N + G+Y +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEFDS-EGRVISIEEKPSRPKSNYVVPGLYFYD 180
Query: 178 PSVLDRIELKPTSIEKE-----VFPEIAAENKLFAMVLP--GFWMDIGQPKDYI 224
V++ S E V E KL ++ W+D G +
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLL 234
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 138 bits (347), Expect = 1e-39
Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 26/245 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KA+IL GG GTRL T+ PKP+V+ KP++ H ++ G+ + ++ Y+ V+
Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 61 LNFLKEF--------------------EKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100
+ + ++ +T + T G L + + DD
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122
Query: 101 SGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDE-PSKYGVVVMEETTGKVEKFVE 159
E F D +++ +K I+FH+ G +A++ P ++G + ++ + +
Sbjct: 123 --EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQAGQVRSFQEKP 180
Query: 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQ 219
K + IN G ++LNPSV+D I+ T+ E+E +A + +L A PGFW +
Sbjct: 181 KGDGAM---INGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT 237
Query: 220 PKDYI 224
+D +
Sbjct: 238 LRDKV 242
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 131 bits (329), Expect = 2e-36
Identities = 47/281 (16%), Positives = 96/281 (34%), Gaps = 49/281 (17%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAVGVTEVVLAINYQPEV 59
+ +IL GG GTRL PLT KP V N +I + ++++ + +
Sbjct: 12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 71
Query: 60 MLNFLKEFEKKLE-------------IKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106
+ L + + GTA + + + +
Sbjct: 72 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYL 131
Query: 107 VLNSDVISEYPLKQMIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVEKP 161
+L D + ++ I+ HR + ++ + +G++ ++E G++ +F EKP
Sbjct: 132 ILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKP 190
Query: 162 KNFVGNK---------------------INAGIYLLNPSVLDRIE----LKPTSIEKEVF 196
+ + GIY+++ V+ + EV
Sbjct: 191 QGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 250
Query: 197 PEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK 236
P + ++ A + G+W DIG + + L +K
Sbjct: 251 PGATSLGMRVQAYLYDGYWEDIGTIEAF---YNANLGITKK 288
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 91.6 bits (226), Expect = 2e-22
Identities = 46/234 (19%), Positives = 97/234 (41%), Gaps = 27/234 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV KP+I +QIE LK G+ ++++ + Y E
Sbjct: 4 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 63
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
++K +++ + + L L +++L + + + + + + +
Sbjct: 64 ----DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELAN----SYVIDADNYLFKNMFRN 115
Query: 121 MIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSV 180
+ + ++ +V ++ KV+ + K +I +G+ +
Sbjct: 116 DLTRSTYFSVYREDCTN---EWFLVYGDD--YKVQDIIVDSKA---GRILSGVSFWDAPT 167
Query: 181 LDRI--ELKPTSIEKE--------VFPEIAAENKLFAMVLPG-FWMDIGQPKDY 223
++I + + E + + E ++ L G +I +DY
Sbjct: 168 AEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDY 221
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 88.2 bits (217), Expect = 6e-21
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 25/231 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ PK L A M+ H ++ A+ + V + ++ E++
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN-SDVISEYPLKQM 121
L + ++E LGT + + L SG + + +I+ LK +
Sbjct: 61 VLAGQTE-------FVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 113
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKIN---AGIYL 175
I+FH A+I+ D P YG +V + + +K +I G Y+
Sbjct: 114 IDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYV 173
Query: 176 LNPSVLDRI--ELKPTSIEKEVFPE------IAAENKLFAMVLPGFWMDIG 218
+ L + + + E + K+ A L F +G
Sbjct: 174 FDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 74.0 bits (180), Expect = 6e-16
Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 10/174 (5%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A K M+ H I+A +G V L + +++
Sbjct: 3 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LK+ + + E LGT + A DD + +IS L++
Sbjct: 60 KQALKDD------NLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQR 113
Query: 121 MIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIY 174
+ + G + V G + GKV VE + I
Sbjct: 114 LRDAKPQG-GIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEIN 166
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 61.6 bits (148), Expect = 2e-11
Identities = 46/263 (17%), Positives = 77/263 (29%), Gaps = 51/263 (19%)
Query: 1 MK--ALILVGGFGTRLRPL-TLSVPKPLVDFA-NKPMILHQIEALKAVGVTEVVLAINYQ 56
MK AL++ GG G RL PL PKP + K ++ +E L + E L +
Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 57 PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY 116
+ + I E TAG + L + + + E VL +D
Sbjct: 61 DQEA------VARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGD 114
Query: 117 PLKQMIEFHRGRG--------GEASIMVDEPSKYGVVVME---ETTGKVEKFVEKPKNFV 165
++YG + + + E FVEKP
Sbjct: 115 DEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAE 174
Query: 166 GNKINAGIYLLNPSVLDR--------------------IELKPTSIEKEVFPEIAAE--- 202
+ Y+ N V L + +EV+ +
Sbjct: 175 ALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISID 234
Query: 203 -------NKLFAMVLPGFWMDIG 218
++ ++ W D+G
Sbjct: 235 YGVMEKAERVRVVLGRFPWDDVG 257
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 56.4 bits (135), Expect = 6e-10
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
M+ A++L GG + K LV + +PM+ +EAL A G++ V + N
Sbjct: 1 MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59
Query: 59 VM 60
Sbjct: 60 PA 61
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Score = 51.2 bits (121), Expect = 4e-08
Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 6/160 (3%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
ALI G G R PK V+ +K ++ H + + ++ + + + +
Sbjct: 6 ALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFAD 62
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
++ ++ + Q G L L + +L D + +
Sbjct: 63 KVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAE---TDNILVHDAARCCLPSEAL 119
Query: 123 EFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPK 162
+ G A+ + +G++ V++
Sbjct: 120 ARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVDRSG 159
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Score = 46.2 bits (108), Expect = 1e-06
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA 43
A++ GFG R++ PK + N+ ++ H + AL A
Sbjct: 6 AVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLA 43
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 1 MK-ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA 43
M A++L G G R+ +VPK ++ + + + +
Sbjct: 3 MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLK 43
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 44.3 bits (103), Expect = 6e-06
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA 43
++L GG G R++ S+PK + +P+ L+
Sbjct: 7 VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSR 44
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (90), Expect = 6e-05
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGED 300
I NV++ +G IG I +S+IG + + VE+ L
Sbjct: 16 THGRDVEIDTNVIIEGNVTLGHRVKIGT--GCVIKNSVIGDDCEISPYTVVED-ANLAAA 72
Query: 301 VHV 303
+
Sbjct: 73 CTI 75
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Score = 41.1 bits (95), Expect = 7e-05
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALK 42
++L G TR V K + N P+ L+ + L
Sbjct: 4 LIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLS 40
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Score = 41.2 bits (95), Expect = 8e-05
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79
KPLVD KPMI+H +E + G +++A +++ E + S
Sbjct: 18 KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSG 74
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KPL D KPMI H E G + V++A + +
Sbjct: 18 KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVAD 55
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 9e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIE 39
++L GG R+ V K L++ KP+ H +
Sbjct: 6 GVVLAGGKARRMG----GVDKGLLELNGKPLWQHVAD 38
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 38.1 bits (87), Expect = 0.001
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 246 SNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVAD 305
S I ++ A+I G IG +IG + ++ N L V
Sbjct: 1 SKIAKTAIISPKAEINKGVEIGEF-------CVIGDGVKLDEGVKLHNNVTLQGHTFVGK 53
Query: 306 EVYSNGAVVLPHK 318
VL +
Sbjct: 54 NTEIFPFAVLGTQ 66
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 37.9 bits (87), Expect = 0.001
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 251 NVLVHEGAKIGDGCLIGPD----KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADE 306
N + G +I I + I ++ + + AR+ + + +
Sbjct: 63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122
Query: 307 VYSNGAVVLPHKEI 320
A VL EI
Sbjct: 123 AIYGDARVLNQSEI 136
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 37.5 bits (86), Expect = 0.002
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 245 GSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVA 304
G+ I GN + + + + IG + I + I + + +++ ++ E
Sbjct: 69 GTEITGNARITQPCTLYNNVRIGD--NVWIDRADISDGARISDNVTIQSSSVREECAIYG 126
Query: 305 DEVYSNGAVVLPH 317
D N + +L
Sbjct: 127 DARVLNQSEILAI 139
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Score = 35.8 bits (81), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLAINYQPEVM 60
KPL+D KPMI H E AL+ GV EV +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQ 57
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 100.0 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.97 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.95 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.93 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.7 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.69 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.67 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.64 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.61 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.6 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.6 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.59 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.53 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.5 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.45 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.44 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.42 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.32 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.25 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.22 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.16 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.15 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.1 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.1 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.09 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.08 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.08 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.07 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.05 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.02 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.98 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.97 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 98.95 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.92 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.82 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.78 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.75 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.72 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.72 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.7 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.68 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.61 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.52 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.51 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.5 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.44 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.42 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.37 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.36 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.09 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.08 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.01 | |
| d2i5ea1 | 208 | Hypothetical protein MM2497 {Methanosarcina mazei | 96.77 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 92.89 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 92.73 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 91.45 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6.7e-42 Score=297.28 Aligned_cols=227 Identities=24% Similarity=0.387 Sum_probs=198.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEec-cChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.||||+|+|..+||||+||+|+|||+|+|+.|..+|+++|+++++ ++.+.+++++.+ ++.+++++.++.
T Consensus 2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~-~~~~g~~I~y~~ 80 (292)
T d1fxoa_ 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAV 80 (292)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred cEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcc-ccccCeEEEEcc
Confidence 589999999999999999999999999999999999999999999999988876 445777777765 456789999999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
|.++.|+++|+..+.+++.++. .|+++++|.+++.++.++++.|.++.+.++++ +++|++||++.+|++ +++..
T Consensus 81 q~~~~Gta~ai~~a~~~i~~~~--~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~-~ki~~ 157 (292)
T d1fxoa_ 81 QPSPDGLAQAFLIGESFIGNDL--SALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAIS 157 (292)
T ss_dssp CSSCCCGGGHHHHTHHHHTTSE--EEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEEE
T ss_pred CCCCCcHHHHHHhhhhhcCCCc--eEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCCHHHCeEEEEcCC-CCEeE
Confidence 9999999999999999997642 56778888899999999999999999988887 788999999999988 99999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhccc-CC----CCcccchHHHHHhcCcEEEEEeC--ceEEecCCHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIEL-KP----TSIEKEVFPEIAAENKLFAMVLP--GFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~-~~----~~~~~~~l~~l~~~~~i~~~~~~--~~~~~i~t~~d~~~a~~~ 229 (331)
+.|||..+.++++.+|+|+|++++++.+.. .+ .....|+++.+++++++.++.+. .+|+|++|+++|++|++.
T Consensus 158 ~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~ 237 (292)
T d1fxoa_ 158 LEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQF 237 (292)
T ss_dssp EEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHH
T ss_pred EEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999887632 11 12224788999999998777763 359999999999999976
Q ss_pred HH
Q 020113 230 YL 231 (331)
Q Consensus 230 ~l 231 (331)
+.
T Consensus 238 v~ 239 (292)
T d1fxoa_ 238 IA 239 (292)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-41 Score=294.57 Aligned_cols=226 Identities=24% Similarity=0.426 Sum_probs=195.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChH-HHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+|+|...||+|+||+|+|||+|+++.|..+|+++|+++++++.. .+++++.+ ++++++++.++.
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~-g~~~gi~I~y~~ 80 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAE 80 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCc-hHhhCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999987754 45666655 567899999999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
|.++.|+++|+..+.+++.++. .++++++|.++..++..+++.|.++.++++++ +++|++||++.+|++ +++..
T Consensus 81 Q~~plGta~Ai~~a~~fi~~~~--~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~-g~i~~ 157 (291)
T d1mc3a_ 81 QPSPDGLAQAFIIGETFLNGEP--SCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAIS 157 (291)
T ss_dssp CSSCCCSTHHHHHTHHHHTTSC--EEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEEE
T ss_pred CCCCCchHHHHHHHHHHhCCCC--eEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccC-cceeE
Confidence 9999999999999999997642 35556666788899999999999988888877 889999999999988 99999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhccc-CC-CCcc---cchHHHHHhcCcEEEEEe-Cc-eEEecCCHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIEL-KP-TSIE---KEVFPEIAAENKLFAMVL-PG-FWMDIGQPKDYITGLRL 229 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~-~~-~~~~---~~~l~~l~~~~~i~~~~~-~~-~~~~i~t~~d~~~a~~~ 229 (331)
+.|||+.+.++++++|+|+|++++++.+.. .+ ...| .++++.+++++.+..+.+ .+ +|+|+||+++|++|+..
T Consensus 158 i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~ 237 (291)
T d1mc3a_ 158 LEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTF 237 (291)
T ss_dssp CCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHH
T ss_pred EEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999988732 11 1222 467888898888776665 23 69999999999999975
Q ss_pred H
Q 020113 230 Y 230 (331)
Q Consensus 230 ~ 230 (331)
.
T Consensus 238 v 238 (291)
T d1mc3a_ 238 V 238 (291)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=4.8e-36 Score=263.26 Aligned_cols=226 Identities=24% Similarity=0.385 Sum_probs=191.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.||||+|+|...||||+||+|+|||+|+++.|..+|+++++|++++.. ..+++++.+ .+.++.++.++.
T Consensus 4 MkavIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~-~~~~~~~i~~v~ 82 (295)
T d1lvwa_ 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRV 82 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEE
T ss_pred cEEEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhcc-chhcCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999998775 555666655 345678899999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
++.+.||++|++.+.+.+.++. .++++++|.+...++..++..+.+....++++ +.++++||++.++.+ ++|..
T Consensus 83 e~~~~gta~Al~~a~~~l~~~~--~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~-~~v~~ 159 (295)
T d1lvwa_ 83 QEEPRGIADAFIVGKDFIGDSK--VALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVIS 159 (295)
T ss_dssp CSSCCCGGGHHHHTHHHHTTSC--EEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCC--EEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcCCCccccEEEECCC-CcEEE
Confidence 9999999999999999997642 67788888888889999999999998888877 677889999999887 89999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccC----C-CCcccchHHHHHhcCcEE--EEEeCceEEecCCHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK----P-TSIEKEVFPEIAAENKLF--AMVLPGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~-~~~~~~~l~~l~~~~~i~--~~~~~~~~~~i~t~~d~~~a~~~ 229 (331)
|.|||..+.++++++|+|+|+++++..+... . .....++++.++..+... .+..+.+|.|++|+++|.+++..
T Consensus 160 ~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~ 239 (295)
T d1lvwa_ 160 IEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSF 239 (295)
T ss_dssp EEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHH
T ss_pred EeecccCcccceeecceEEECHHHHHHHHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHH
Confidence 9999998889999999999999988766221 1 111235677777777644 44456789999999999999876
Q ss_pred H
Q 020113 230 Y 230 (331)
Q Consensus 230 ~ 230 (331)
+
T Consensus 240 i 240 (295)
T d1lvwa_ 240 I 240 (295)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=4.3e-36 Score=265.49 Aligned_cols=233 Identities=19% Similarity=0.319 Sum_probs=186.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh-------hccC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-------KKLE 72 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-------~~~~ 72 (331)
+.|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+.. +..+
T Consensus 12 ~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~ 91 (307)
T d1yp2a2 12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 91 (307)
T ss_dssp EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred eEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccccc
Confidence 4699999999999999999999999999875 9999999999999999999999999998988887521 1122
Q ss_pred eEEEEeeCCc------ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCC
Q 020113 73 IKITCSQETE------PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSK 141 (331)
Q Consensus 73 ~~v~~~~~~~------~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~ 141 (331)
....+..+.. ..|++++++.++..+.+...++|++++||.+++.++..+++.|+.+++.+++. .++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (307)
T d1yp2a2 92 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA 171 (307)
T ss_dssp EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred cceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccccccc
Confidence 3333332222 36899999999999977655589999999999999999999999999988777 234568
Q ss_pred ceEEEEcCCcCceeEeeecCCCC---------------------CCCeEEEEEEEEChhhHhhc-c---cCCCCcccchH
Q 020113 142 YGVVVMEETTGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLDRI-E---LKPTSIEKEVF 196 (331)
Q Consensus 142 ~~~v~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~l-~---~~~~~~~~~~l 196 (331)
||++.+|++ +++.++.|||... ...+.++|+|+|+++++..+ . ....++..+++
T Consensus 172 ~gvv~~d~~-~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i 250 (307)
T d1yp2a2 172 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 250 (307)
T ss_dssp SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred cceEEECCC-CcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHH
Confidence 999999988 9999999997521 13588999999999988765 2 22345667889
Q ss_pred HHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHhhh
Q 020113 197 PEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 234 (331)
Q Consensus 197 ~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~ 234 (331)
+.++.++ ++.+++++|+|.|++||++|++|++.++.+.
T Consensus 251 ~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~ 289 (307)
T d1yp2a2 251 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 289 (307)
T ss_dssp HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSS
T ss_pred HHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCC
Confidence 8888876 5999999999999999999999999887554
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-32 Score=235.31 Aligned_cols=228 Identities=29% Similarity=0.531 Sum_probs=183.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhh-----------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----------- 69 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~----------- 69 (331)
++|||||||.|+||+|+|...||||+||+|+|||+|+|+.|.++|+++|++++++..+.+.+++.+...
T Consensus 3 ~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~~ 82 (259)
T d1tzfa_ 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE 82 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred ceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchhcc
Confidence 489999999999999999999999999999999999999999999999999999999999999875210
Q ss_pred ---------ccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-ecCC
Q 020113 70 ---------KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEP 139 (331)
Q Consensus 70 ---------~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~~~~ 139 (331)
.....+.++.+....++.+++..+.+....+. +|+++.+|.+++.++..+++.+.......+.. +.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (259)
T d1tzfa_ 83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDE--AFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPP 160 (259)
T ss_dssp TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSS--CEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEECCC
T ss_pred ccchhhhccccccceeEEeccccccccchhhhhhhhccCCC--ceEEeccccccccchhhhhhhhcccccceeecccccc
Confidence 01123455666677888999998888876543 89999999999999999999998888877777 6666
Q ss_pred CCceEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCC
Q 020113 140 SKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQ 219 (331)
Q Consensus 140 ~~~~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t 219 (331)
..++...... ..+..+.+.+. ..+.+..+|+|++++++++.+.....+++.++++.|++++++.+|.++++|.|+||
T Consensus 161 ~~~~~~~~~~--~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt 237 (259)
T d1tzfa_ 161 GRFGALDIQA--GQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT 237 (259)
T ss_dssp CCSEEEEEET--TEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCS
T ss_pred ccCCceeccc--ceEEeeeeccc-cceeeecceeccccchhhhhcccCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCC
Confidence 7777666554 46666555443 45678999999999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 020113 220 PKDYITGLRLYLDF 233 (331)
Q Consensus 220 ~~d~~~a~~~~l~~ 233 (331)
|+||..+++.+.+.
T Consensus 238 ~~d~~~~~~~~~~~ 251 (259)
T d1tzfa_ 238 LRDKVYLEGLWEKG 251 (259)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998877654
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.97 E-value=2e-30 Score=219.08 Aligned_cols=214 Identities=21% Similarity=0.352 Sum_probs=162.9
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||+|+|...||||+||+|+|||+|+++.|.++|+++|+|++++..+.+..+..+ +++++.+..+
T Consensus 4 mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~~----~~i~i~~~~~ 79 (229)
T d1jyka_ 4 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK----YGVRLVFNDK 79 (229)
T ss_dssp CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH----HCCEEEECTT
T ss_pred eeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhhhhhh----cccccccccc
Confidence 899999999999999999999999999999999999999999999999999999877766544333 4678888888
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEeeec
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEK 160 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ek 160 (331)
.++.|++++++.+.+.+.+ +|++..+|.++...+...+ ......++.+.++..++.+..+++ +++..+.++
T Consensus 80 ~~~~Gt~~sl~~a~~~l~~----~~ii~~dd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 150 (229)
T d1jyka_ 80 YADYNNFYSLYLVKEELAN----SYVIDADNYLFKNMFRNDL----TRSTYFSVYREDCTNEWFLVYGDD-YKVQDIIVD 150 (229)
T ss_dssp TTTSCTHHHHHTTGGGCTT----EEEEETTEEESSCCCCSCC----CSEEEEECEESSCSSCCEEEECTT-CBEEEEECC
T ss_pred ccccccccccccchhhhcc----cccccccccccccchhhhh----hccccceeeeeeccccceeEEccC-CceeeEEEe
Confidence 8889999999999988853 7777776666655443221 111111222677788888899888 899999887
Q ss_pred CCCCCCCeEEEEEEEEChhhHhhc----c-----cCCCC-cccchHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHHHHH
Q 020113 161 PKNFVGNKINAGIYLLNPSVLDRI----E-----LKPTS-IEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYITGLRL 229 (331)
Q Consensus 161 ~~~~~~~~~~~Giy~~~~~~l~~l----~-----~~~~~-~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d~~~a~~~ 229 (331)
|. ..++.+|+|+|++...+.+ . ....+ +..+++..++.+..++++...+ .|.+++||+||.+++..
T Consensus 151 ~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~ 227 (229)
T d1jyka_ 151 SK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEI 227 (229)
T ss_dssp CS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHH
T ss_pred cc---cceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHh
Confidence 64 4577899999998765433 1 11111 1223455566667788888766 59999999999999765
Q ss_pred H
Q 020113 230 Y 230 (331)
Q Consensus 230 ~ 230 (331)
+
T Consensus 228 ~ 228 (229)
T d1jyka_ 228 L 228 (229)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=1.7e-30 Score=224.21 Aligned_cols=220 Identities=23% Similarity=0.356 Sum_probs=156.8
Q ss_pred Ce--EEEEeCCCCcccCCC-CCCCCCCCcee-CCcchHHHHHHHHHH-cCCCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 1 MK--ALILVGGFGTRLRPL-TLSVPKPLVDF-ANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 1 m~--avIlA~G~g~rl~pl-t~~~pK~llpi-~g~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
|+ |||||||.||||+|| |..+||+|+|+ +|+|||+|+++++.. .+.+++++++++..+.+.++... +.+
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~-----~~~- 74 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD-----GIR- 74 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS-----SSE-
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhcc-----ccc-
Confidence 77 899999999999999 56789999997 579999999999887 46788999888876655443221 233
Q ss_pred EEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccH--HHHHHHH---hhcCCceEEE---ecCCCCceEEEE
Q 020113 76 TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPL--KQMIEFH---RGRGGEASIM---VDEPSKYGVVVM 147 (331)
Q Consensus 76 ~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l--~~~l~~~---~~~~~~~~i~---~~~~~~~~~v~~ 147 (331)
++.++.+.|++.++..++..+....++.++|++||.++..++ ...+..+ .+.+..+++. ..++++||++.+
T Consensus 75 -ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~ 153 (268)
T d2cu2a2 75 -LLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRL 153 (268)
T ss_dssp -EEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEE
T ss_pred -eeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccccccccceEEe
Confidence 445667889998888777665433344899999999887764 3344432 2344445554 456789999999
Q ss_pred cCCcC---ceeEeeecCCCC-------CCCeEEEEEEEEChhhHhhc-ccC------------CCCcccchHHH------
Q 020113 148 EETTG---KVEKFVEKPKNF-------VGNKINAGIYLLNPSVLDRI-ELK------------PTSIEKEVFPE------ 198 (331)
Q Consensus 148 d~~~~---~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~l~~l-~~~------------~~~~~~~~l~~------ 198 (331)
+++.+ +|..|.|||... ...++++|+|+|+++.+... ... ......+.++.
T Consensus 154 ~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSi 233 (268)
T d2cu2a2 154 GPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI 233 (268)
T ss_dssp EEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCH
T ss_pred ccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccc
Confidence 76522 689999998742 24689999999999876322 100 00011111111
Q ss_pred ----HHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 020113 199 ----IAAENKLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 199 ----l~~~~~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
|.+..++.+++++++|.|+||.+++.+..
T Consensus 234 DyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 234 DYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred hhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 23456799999999999999999998764
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=9.4e-27 Score=198.43 Aligned_cols=222 Identities=23% Similarity=0.322 Sum_probs=172.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.|||||||.|+||+| ..||||+||+|+|||+|+++.|.++|++++++++++.......+... ...+....
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~~~~~~ 72 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-------QTEFVTQS 72 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTT-------TSEEEECS
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhccc-------cccccccc
Confidence 499999999999999 67999999999999999999999999999999999887766655433 12234456
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeC-Ce-eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNS-DV-ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~-D~-i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
.+.|+..++..+...+..... +++++.+ |. +...+++++++.+.+.....++. ...+..++.+..+.. ..+..
T Consensus 73 ~~~g~~~~~~~a~~~l~~~~~-~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 150 (250)
T d1g97a2 73 EQLGTGHAVMMTEPILEGLSG-HTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLR 150 (250)
T ss_dssp SCCCHHHHHHTTHHHHTTCCS-EEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred cccccchHHHHHHHhhhcccC-cceEEecCCCccCHHHHHHHHHHHhhhccccccccceecccCCCceEEEeec-eEEEE
Confidence 778999999999888876554 4554544 44 45567999999999998888777 556677888887776 78888
Q ss_pred eeecCCCC----CCCeEEEEEEEEChhhHhhc----cc---CCCCcccchHHHHHhcC-cEEEEEeCceEEe--cCCHHH
Q 020113 157 FVEKPKNF----VGNKINAGIYLLNPSVLDRI----EL---KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMD--IGQPKD 222 (331)
Q Consensus 157 ~~ek~~~~----~~~~~~~Giy~~~~~~l~~l----~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~--i~t~~d 222 (331)
+.+++... ..++..+|+|.|++..+... .. ....+..++++.+++++ ++.++.++++|.+ ++|++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~d 230 (250)
T d1g97a2 151 IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA 230 (250)
T ss_dssp EECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHH
T ss_pred eeccccccccccccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHH
Confidence 88876532 46799999999998765432 11 12234456788888876 6999999998865 789999
Q ss_pred HHHHHHHHHhhhc
Q 020113 223 YITGLRLYLDFLQ 235 (331)
Q Consensus 223 ~~~a~~~~l~~~~ 235 (331)
+..|++.+..+.+
T Consensus 231 L~~ae~~~~~~~~ 243 (250)
T d1g97a2 231 LATAESVMRRRIN 243 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766543
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-24 Score=185.17 Aligned_cols=219 Identities=24% Similarity=0.339 Sum_probs=156.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|++||||||.|+||+| .+||||+||+|+|||+|+++.|...|+++|+|++++....+.++..+ ....+..+
T Consensus 3 MkvIILAAG~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~------~~~~~~~~ 73 (248)
T d2oi6a2 3 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKD------DNLNWVLQ 73 (248)
T ss_dssp EEEEEECCSCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCC------TTEEEEEC
T ss_pred ceEEEECCCCCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeeccc------cccccccc
Confidence 8999999999999998 68999999999999999999999999999999999987766655433 22344556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeecccc--HHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP--LKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~--l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|+++++..+...+..+. ++++..+|..+... +..+.... ......++ ..++..++.+..+. +...
T Consensus 74 ~~~~g~~~~~~~~~~~i~~~~--~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 147 (248)
T d2oi6a2 74 AEQLGTGHAMQQAAPFFADDE--DILMLYGDVPLISVETLQRLRDAK--PQGGIGLLTVKLDDPTGYGRITREN--GKVT 147 (248)
T ss_dssp SSCCCHHHHHHHHGGGSCTTS--EEEEEETTCTTCCHHHHHHHHHHC--CTTSEEEEEEECSCCTTSCEEEEET--TEEE
T ss_pred ccCcccHHHHHhhhhhhcccc--ceeeecCccccccchhHHHHHHHh--hccccceeEEEecCCcccccccccc--Cccc
Confidence 778899999999999886654 78888888866443 23333322 22222232 66777787777665 3444
Q ss_pred Eeeec-C---CCCCCCeEEEEEEEEChhhHhh-cc---cCC---CCcccchHHHHHhcC-cEEEEEeCceEE--ecCCHH
Q 020113 156 KFVEK-P---KNFVGNKINAGIYLLNPSVLDR-IE---LKP---TSIEKEVFPEIAAEN-KLFAMVLPGFWM--DIGQPK 221 (331)
Q Consensus 156 ~~~ek-~---~~~~~~~~~~Giy~~~~~~l~~-l~---~~~---~~~~~~~l~~l~~~~-~i~~~~~~~~~~--~i~t~~ 221 (331)
.+.++ + ......+..+|.|.|+.+.+.. +. ... .....++++.+++.| ++.++..+++|. .|+||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~e 227 (248)
T d2oi6a2 148 GIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRL 227 (248)
T ss_dssp EEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHH
T ss_pred eeeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHH
Confidence 44333 2 2234568899999999876643 31 111 112346788888887 577777776552 488999
Q ss_pred HHHHHHHHHHhhh
Q 020113 222 DYITGLRLYLDFL 234 (331)
Q Consensus 222 d~~~a~~~~l~~~ 234 (331)
||..|.+.+..+.
T Consensus 228 DL~~ae~i~~~~~ 240 (248)
T d2oi6a2 228 QLSRLERVYQSEQ 240 (248)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999987765443
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.70 E-value=1.5e-16 Score=132.81 Aligned_cols=210 Identities=12% Similarity=0.167 Sum_probs=120.8
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++|+|++++... +++.++...++..+.+...
T Consensus 6 ~~IIlAaG~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~---~~~~~~~~~~~~~~~~~~g 79 (226)
T d1w77a1 6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR---DIFEEYEESIDVDLRFAIP 79 (226)
T ss_dssp EEEEECCC----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGT---HHHHTTTTSCSSEEEEECC
T ss_pred EEEEeCCccCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhh---hhhhccccccccccccccc
Confidence 589999999999986 78999999999999999999999985 7888888875432 3344434444555555432
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
.....++++.++..+....+ .+++..||.. ....+..+++.+.+.+..++.. ..+..... ..+ +.....
T Consensus 80 --g~~r~~sv~~~l~~~~~~~~-~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~~~~~d~~~~~----~~~-~~~~~~ 151 (226)
T d1w77a1 80 --GKERQDSVYSGLQEIDVNSE-LVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEV----NSD-SLVVKT 151 (226)
T ss_dssp --CSSHHHHHHHHHHTSCTTCS-EEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCB----CTT-SCBC--
T ss_pred --cchhhhhhhhhHhhhccccc-cceecccccccccHHHhhhhhhhhhccCceeeccccccceEEE----ccC-Cceeec
Confidence 22346788999888865443 7888999993 3445888888877766544444 22221110 111 122111
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhc----ccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRI----ELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l----~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
.+ ....+...+.+.|+.+.+... ......+ .|....+...| ++....-+..-..|+||+|+..|...+
T Consensus 152 ~~----r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 152 LD----RKTLWEMQTPQVIKPELLKKGFELVKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp --------CCEEEEEEEEECHHHHHHHHHHHHHSCCCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred cc----chhhhHHHHHHhHhhHHHHHHHHHHHhcCCCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 11 112345567789998776543 1122222 12111222223 454444322223589999999996543
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=2.6e-16 Score=130.91 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=126.7
Q ss_pred Ce-EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEe
Q 020113 1 MK-ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~-avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (331)
|+ |||||||.|+||+. ..||+|++++|+|||+|+++.+.++ +++.|+|+++..... ++.... .....+.+.
T Consensus 3 M~iAIILAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~---~~~~~~-~~~~~~~~~ 75 (221)
T d1vpaa_ 3 MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFE---VVEKRV-FHEKVLGIV 75 (221)
T ss_dssp CEEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHH---HHHTTC-CCTTEEEEE
T ss_pred CeEEEEccCcCcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhh---HHHhhh-ccccccccc
Confidence 55 69999999999975 6899999999999999999999997 489999988755322 222211 112334444
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCcee
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~ 155 (331)
.. ..+...+...++..+.....+.++++.||.. ....+..+++.+.+....+... ..+ .+...+. +...
T Consensus 76 ~~--~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~~~~~~~~d----~~~~~~~--~~~~ 147 (221)
T d1vpaa_ 76 EG--GDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSD----ALVRVEN--DRIE 147 (221)
T ss_dssp EC--CSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCS----EEEEEET--TEEE
T ss_pred cc--cccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccccccccccc----eeEeecC--ccce
Confidence 32 2234566666666665444448999999983 3445788888877655433322 211 1222222 2222
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~ 229 (331)
.+ .+ ...+...+.+.|..+.+.....+...+ .|....+...+ ++..+.-+.....|+||+|+..|...
T Consensus 148 ~~-~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~-tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~l 216 (221)
T d1vpaa_ 148 YI-PR----KGVYRILTPQAFSYEILKKAHENGGEW-ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARII 216 (221)
T ss_dssp EE-CC----TTEEEEEEEEEEEHHHHHHHHTTCCCC-SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHH
T ss_pred ec-ch----HHHHHhhhhhhhhHHHHHHHHHhCCCC-ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHH
Confidence 22 11 123556777888877776653332223 33444455544 46555533333469999998777544
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.9e-16 Score=132.11 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=124.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.|||||||.|+||+. ..||+|+|++|+|||+|+++.+.++ ++++|+|+++++...+.+.... .. ..+.+...
T Consensus 5 ~AIILAaG~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~--~~--~~v~~~~~ 77 (225)
T d1i52a_ 5 CAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLA--NH--PQITVVDG 77 (225)
T ss_dssp EEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGG--GC--TTEEEEEC
T ss_pred EEEEeCCCcceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhc--cc--cccccccC
Confidence 489999999999986 7899999999999999999999987 5899999998765443333222 11 12333322
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
..+..++++.+...+.+.. .+++..+|. +....+..+++.................... ...... +......
T Consensus 78 --~~~~~~sv~~~~~~~~~~~--~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~-~~~~~~-~~~~~~~ 151 (225)
T d1i52a_ 78 --GDERADSVLAGLKAAGDAQ--WVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMK-RAEPGK-NAIAHTV 151 (225)
T ss_dssp --CSSHHHHHHHHHHTSTTCS--EEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEE-EECTTS-SSEEEEE
T ss_pred --CcchhHHHHhhhcccCccc--eeeeeccCCCCCCHHHHHHHHhhhhhcccccccccceeeccc-hhcccc-ccccccc
Confidence 2345689999999886542 677788887 3344577777776655444433322111111 111221 2332222
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhc-c---cCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRI-E---LKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l-~---~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~ 229 (331)
++. ......+.+.|..+.+... . .....+ .|....+...| ++..+..+..-..|+||+|+..|+..
T Consensus 152 ~~~----~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~-tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~ 222 (225)
T d1i52a_ 152 DRN----GLWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFY 222 (225)
T ss_dssp CCT----TCEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred chH----HHHHHhhhhhhhhHHHHHHHHHHHhcCCCC-CcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHH
Confidence 221 1233446677777655443 1 111111 34444454544 46544432222458999999888553
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.64 E-value=2.8e-15 Score=125.00 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=110.9
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
|||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ ++.++|++++.. .+.+.+..... .. ..+. .
T Consensus 6 AIIlAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~-~~~~~~~~~~~--~~-~~~~--~ 76 (226)
T d1vgwa_ 6 ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADKVQTAFP--QV-RVWK--N 76 (226)
T ss_dssp EEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHHHHHHCT--TS-EEEC--C
T ss_pred EEEeCCCCcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhh-hhhhhhccccc--ce-eecc--c
Confidence 89999999999975 68999999999999999999999986 577777776543 23344443211 11 2122 1
Q ss_pred cccCChHHHHHHHhhc----cCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCcee
Q 020113 82 EPLGTAGPLALARDKL----IDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~----~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~ 155 (331)
......++...++..+ .....+.+++..||. +....+..+++.+......+........ .....+ + +.+.
T Consensus 77 g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~~~~~--~~~~~~-~-~~i~ 152 (226)
T d1vgwa_ 77 GGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVAD--TLKRAE-S-GQIS 152 (226)
T ss_dssp CCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCS--CEEEES-S-SBEE
T ss_pred cccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceeecccccc--cceecc-C-CeEE
Confidence 1122344444444433 222233788888987 3345588999988877766554422222 122222 2 5565
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhc-ccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRI-ELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
...+++. ......-..|..+.+... .......-.|....+.+.+ ++..+.-+.....|+||+|+..|..
T Consensus 153 ~~~~r~~----~~~~~~p~~f~~~~l~~~~~~~~~~~~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ 223 (226)
T d1vgwa_ 153 ATVDRSG----LWQAQTPQLFQAGLLHRALAAENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL 223 (226)
T ss_dssp EEECCTT----EEEEEEEEEEEHHHHHHHHHC----CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred eccchHH----HHHHHhhhcccHHHHHHHHHHhhcCCCCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHH
Confidence 5554322 111222356666655433 2211111134344444444 4655554433467999999988854
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.61 E-value=7.6e-14 Score=117.58 Aligned_cols=214 Identities=20% Similarity=0.187 Sum_probs=136.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
-|||+|.|.++|+.. |+|.+|+|+|||+|+++.+.++++++|+|++. .+.+.++..+ ++.++.+..+.
T Consensus 3 i~iIpAR~gSkrip~------KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~~----~g~~v~~~~~~ 70 (246)
T d1vh1a_ 3 VVIIPARYASTRLPG------KPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEVCMTRAD 70 (246)
T ss_dssp EEEEECCCCCC--CC------TTTCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECC--
T ss_pred EEEEecCCCCcCCCC------chhhhcCCccHHHHHHHHHHHcCCCcEEEEec--Cccccchhhc----ccccceeeccc
Confidence 489999999999932 99999999999999999999999999999885 3445556555 35667666554
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCceEEE-e--cC-----CCCceEEEEcCCc
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEASIM-V--DE-----PSKYGVVVMEETT 151 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~i~-~--~~-----~~~~~~v~~d~~~ 151 (331)
...|+ ++...+.........+.++.+.||..+ ...+..+++.+.....+.... . .. ......+..+.+
T Consensus 71 ~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~- 148 (246)
T d1vh1a_ 71 HQSGT-ERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE- 148 (246)
T ss_dssp ---CH-HHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred ccccc-hHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeeccc-
Confidence 44444 444444444433333378889999954 345888888888877765444 1 11 111223444555
Q ss_pred CceeEeeecCC-------------CCCCCeEEEEEEEEChhhHhhccc-CCCCcc----cchHHHHHhcCcEEEEEeCc-
Q 020113 152 GKVEKFVEKPK-------------NFVGNKINAGIYLLNPSVLDRIEL-KPTSIE----KEVFPEIAAENKLFAMVLPG- 212 (331)
Q Consensus 152 ~~v~~~~ek~~-------------~~~~~~~~~Giy~~~~~~l~~l~~-~~~~~~----~~~l~~l~~~~~i~~~~~~~- 212 (331)
+++..+...+. .....+...|+|+|+++.+..... .....| -+.++.+-...++..+..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~ 228 (246)
T d1vh1a_ 149 GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEV 228 (246)
T ss_dssp SBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred CcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHhHHHHHHHHCCCceEEEEecCC
Confidence 67666654321 122457789999999998876522 111111 13454443344688787765
Q ss_pred eEEecCCHHHHHHHHHH
Q 020113 213 FWMDIGQPKDYITGLRL 229 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~ 229 (331)
...||||++||-.|...
T Consensus 229 ~~~~IDt~~Dl~~a~k~ 245 (246)
T d1vh1a_ 229 PGTGVDTPEDLERVRAE 245 (246)
T ss_dssp CCCCCCSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhc
Confidence 36799999999888654
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=8.4e-14 Score=117.85 Aligned_cols=215 Identities=18% Similarity=0.176 Sum_probs=139.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
-+||+|.|.++|+. .|.|.+++|+|||+|+++.+.++++++|+|++.. +++.+...+ ++..+.+..+.
T Consensus 3 ~~iIpAR~gSkRlp------~Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~~~----~~~~~~~~~~~ 70 (255)
T d1vica_ 3 TVIIPARFASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKS----FGAEVCMTSVN 70 (255)
T ss_dssp EEEEECCCCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEECCCS
T ss_pred EEEEecCCCCCCCC------CchhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCC--cccchhhhh----hccccceeeec
Confidence 48999999999982 2999999999999999999999999998888753 345555444 45667666665
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCceEEE-e-------cCCCCceEEEEcCCc
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEASIM-V-------DEPSKYGVVVMEETT 151 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~i~-~-------~~~~~~~~v~~d~~~ 151 (331)
...|+..+..........+ .+.++.+.||..+ ...+..+++.+.......+.. . ...........+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 148 (255)
T d1vica_ 71 HNSGTERLAEVVEKLAIPD-NEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD- 148 (255)
T ss_dssp SCCHHHHHHHHHHHTTCCT-TCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred cCCcchhhHHHHHHhhccC-CceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccC-
Confidence 5555555544444444333 3377888999944 345788888888776665544 1 11223334444554
Q ss_pred CceeEeeecCC-----------------CCCCCeEEEEEEEEChhhHhhccc-CCCCccc----chHHHHHhcCcEEEEE
Q 020113 152 GKVEKFVEKPK-----------------NFVGNKINAGIYLLNPSVLDRIEL-KPTSIEK----EVFPEIAAENKLFAMV 209 (331)
Q Consensus 152 ~~v~~~~ek~~-----------------~~~~~~~~~Giy~~~~~~l~~l~~-~~~~~~~----~~l~~l~~~~~i~~~~ 209 (331)
+.+..+...+. .........|+|+|++..+..+.. .....+. +.++.+....++..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le~~e~le~lr~l~ng~~I~~~~ 228 (255)
T d1vica_ 149 GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVEL 228 (255)
T ss_dssp SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEE
T ss_pred CcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhHHHHhHHHHHHHHCCCceeEEE
Confidence 66655544321 122346789999999998876522 1111110 1233343344677776
Q ss_pred eCc-eEEecCCHHHHHHHHHHH
Q 020113 210 LPG-FWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 210 ~~~-~~~~i~t~~d~~~a~~~~ 230 (331)
.+. .+.||||++||..|...+
T Consensus 229 ~~~~~~idIDt~eDl~~ae~il 250 (255)
T d1vica_ 229 AKEVPAVGVDTAEDLEKVRAIL 250 (255)
T ss_dssp CSSCCCCCCCSHHHHHHHHHHH
T ss_pred eCCCCCcCCCCHHHHHHHHHHH
Confidence 654 477999999999996554
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.2e-15 Score=120.89 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=76.0
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.|||||||.|+||+. .||+|++++|+|||+|+++.+... +.+++++++...+.. .. .+..+......
T Consensus 5 ~~iILAgG~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~~~~----~~----~~~~v~~d~~~ 71 (188)
T d1e5ka_ 5 TGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEIY----QA----SGLKVIEDSLA 71 (188)
T ss_dssp EEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSHHHH----HT----TSCCEECCCTT
T ss_pred eEEEEcCCCCcCCCC----CCcccCEECCEehhHHHHhhhccc-ccccccccCccHHhh----hh----cCCCccccccc
Confidence 589999999999973 389999999999999999999887 577888777654321 11 23344333333
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHH
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEF 124 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~ 124 (331)
...|...++..+......+ .+++++||+. ....+..+++.
T Consensus 72 ~~~~~~~g~~~~~~~~~~~---~vlv~~~D~P~i~~~~i~~L~~~ 113 (188)
T d1e5ka_ 72 DYPGPLAGMLSVMQQEAGE---WFLFCPCDTPYIPPDLAARLNHQ 113 (188)
T ss_dssp CCCSHHHHHHHHHHHCCSS---EEEEEETTCTTCCTTHHHHHHHT
T ss_pred cccchhHHHHHHHHhcccc---eEEEeccCCCCCCHHHHHHHHHh
Confidence 4455667777777666543 8999999993 33346666664
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.59 E-value=1.2e-13 Score=116.20 Aligned_cols=215 Identities=19% Similarity=0.137 Sum_probs=138.3
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
+||+|.|.++|+. .|+|++++|+|||+|+++.+.+.+ +++|+|++... .+...... ++.++.....
T Consensus 5 ~iIpAR~~SkRl~------~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~--~i~~~~~~----~~~~~~~~~~- 71 (245)
T d1h7ea_ 5 IVIPARYGSSRLP------GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP--RVEQAVQA----FGGKAIMTRN- 71 (245)
T ss_dssp EEEECCSCCSSST------TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH--HHHHHHHH----TTCEEEECCS-
T ss_pred EEEcCCCCCcCCC------CccccccCCccHHHHHHHHHHhCCCCCeEEEecccc--cchhhhhh----cCceEEEecC-
Confidence 7899999999983 399999999999999999999874 88888877533 34444444 3455544432
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCceEEE---ec----CCC-CceEEEEcCCc
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEASIM---VD----EPS-KYGVVVMEETT 151 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~i~---~~----~~~-~~~~v~~d~~~ 151 (331)
...++..++..+...+..+ .++.+.+|..+ ...+..+++.+.......... .. ... ..........
T Consensus 72 ~~~~~~~~~~~~~~~~~~d---~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~- 147 (245)
T d1h7ea_ 72 DHESGTDRLVEVMHKVEAD---IYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTR- 147 (245)
T ss_dssp CCSSHHHHHHHHHHHSCCS---EEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTT-
T ss_pred ccccccHHHHHHHHhcCCC---EEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeeccchh-
Confidence 3334566777777777553 77789999944 345788888877665544333 11 111 1112222222
Q ss_pred CceeEeeecCCC------CCCCeEEEEEEEEChhhHhhcccC-CCCccc----chHHHHHhcCcEEEEEeCceEEecCCH
Q 020113 152 GKVEKFVEKPKN------FVGNKINAGIYLLNPSVLDRIELK-PTSIEK----EVFPEIAAENKLFAMVLPGFWMDIGQP 220 (331)
Q Consensus 152 ~~v~~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l~~~-~~~~~~----~~l~~l~~~~~i~~~~~~~~~~~i~t~ 220 (331)
+....+...+.. .......+|+|.|+++.++.+... ....+. +.++.+-...++.++..++.+.+|||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~ 227 (245)
T d1h7ea_ 148 QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTP 227 (245)
T ss_dssp CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSH
T ss_pred hhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCH
Confidence 444554443321 123477899999999988776321 211111 234434344468888888888999999
Q ss_pred HHHHHHHHHHHhhh
Q 020113 221 KDYITGLRLYLDFL 234 (331)
Q Consensus 221 ~d~~~a~~~~l~~~ 234 (331)
+||..|...+-.++
T Consensus 228 ~Dl~~a~~il~~~~ 241 (245)
T d1h7ea_ 228 ACLEKVRALMAQEL 241 (245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999977765554
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=6e-15 Score=123.34 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=87.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.|||||||.|+||++++. .||+|+|++|+|||+|+++.+..++++.+++++++.... . . .....
T Consensus 4 ~avIlA~G~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~~-------------~-~-~~~~~ 67 (231)
T d2dpwa1 4 SAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP-------------A-P-ALTLP 67 (231)
T ss_dssp EEEEECCCBCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCSS-------------C-C-SEEEC
T ss_pred eEEEECCCCCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeeccccc-------------e-e-eeecc
Confidence 599999999999998774 379999999999999999999999999998888765311 0 0 11124
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEE
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASI 134 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i 134 (331)
...|..+++..+++.+.+ ++++++||. +....++.+++.+.+.+....+
T Consensus 68 ~~~~~~~~v~~al~~~~~----~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 118 (231)
T d2dpwa1 68 DRGGLLENLEQALEHVEG----RVLVATGDIPHLTEEAVRFVLDKAPEAALVYPI 118 (231)
T ss_dssp CCSSHHHHHHHHHHTCCS----EEEEEETTCTTCCHHHHHHHHHHCCSCSEEEEE
T ss_pred cchHHHHHHHHHHHhhcC----ceEEeeCCCccCCHHHHHHHHHHhhhcCceEEE
Confidence 456889999999998854 899999999 3445588888876554443333
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=3.1e-14 Score=96.95 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=50.9
Q ss_pred EcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEcc
Q 020113 254 VHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKS 322 (331)
Q Consensus 254 i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 322 (331)
|..++.||++|.|+ ++++|+ +++||++|+||++|.|.+ |+|+++++|++++.|.+|+|+++++|++
T Consensus 11 I~g~v~IG~~~~I~--~~~~i~g~~~IG~~v~Ig~~~~i~~-~~Ig~~~~I~~~s~i~~~~Ig~~~~IGP 77 (78)
T d1fxja1 11 LRGTLTHGRDVEID--TNVIIEGNVTLGHRVKIGTGCVIKN-SVIGDDCEISPYTVVEDANLAAACTIGP 77 (78)
T ss_dssp EEEEEEECSSCEEC--TTEEEEEEEEECTTCEECTTCEEES-CEECTTCEECTTCEEESEEECTTCEESC
T ss_pred EeccEEECCCCEEC--CccEEeCCcEECCCCEECCCeEEec-CEECCCCEEcCCcEEECCEECCCCEECc
Confidence 33344444555555 445554 478999999999999987 9999999999999999999999999886
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=7.9e-14 Score=94.91 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=62.3
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
+.+.++++++.|+++++|+.++.||++|.|| ++|.|++|+|+++|.|+++|.|.+ |+|+++|+||+.
T Consensus 12 ~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig--~~~~i~~~~Ig~~~~I~~~s~i~~-~~Ig~~~~IGPf 78 (78)
T d1fxja1 12 RGTLTHGRDVEIDTNVIIEGNVTLGHRVKIG--TGCVIKNSVIGDDCEISPYTVVED-ANLAAACTIGPF 78 (78)
T ss_dssp EEEEEECSSCEECTTEEEEEEEEECTTCEEC--TTCEEESCEECTTCEECTTCEEES-EEECTTCEESCC
T ss_pred eccEEECCCCEECCccEEeCCcEECCCCEEC--CCeEEecCEECCCCEEcCCcEEEC-CEECCCCEECcC
Confidence 3456789999999999999999999999999 889999999999999999999998 999999999973
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.44 E-value=1.9e-13 Score=111.33 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=80.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
+.+||||||.|+||+. ..||+|++++|+|||+|+++.+.+.. ++.|+++++ ..+ ++.++.+ . +.++.
T Consensus 2 is~IILAaG~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~-~~~----~~~~~~~--~--~~~v~ 69 (205)
T d1w55a1 2 MSLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NIT----YMKKFTK--N--YEFIE 69 (205)
T ss_dssp EEEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHH----HHHTTCS--S--SEEEE
T ss_pred eEEEEeCCccCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhccccccccccc-ccc----ccccccc--c--ccccc
Confidence 3689999999999986 68999999999999999999999875 677777654 322 2333221 1 22232
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe-ec-cccHHHHHHHHhhcCC
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGRGG 130 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i~-~~~l~~~l~~~~~~~~ 130 (331)
......++++.+++.+..+ .+++..||. +. ...++.+++.+.+.++
T Consensus 70 --Gg~~r~~Sv~~gl~~~~~~---~VlIhd~~rP~i~~~~i~~li~~~~~~~~ 117 (205)
T d1w55a1 70 --GGDTRAESLKKALELIDSE---FVMVSDVARVLVSKNLFDRLIENLDKADC 117 (205)
T ss_dssp --CCSSHHHHHHHHHTTCCSS---EEEEEETTCTTCCHHHHHHHHTTGGGCSE
T ss_pred --cccchhhhhhhhhhhhhhc---ceeeeccCcccCcHHHHHHHHhhhhcccc
Confidence 2223467888888888543 788999999 33 3458888887765543
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.42 E-value=2.2e-12 Score=106.68 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=127.9
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
|||+|.|.++|+ | .|+|++++|+|||+|+++.+.+++ +++|+|.+. .+.+.+.+.++ +..+......
T Consensus 7 aiIpar~~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~~~~----~~~~~~~~~~ 74 (225)
T d1eyra_ 7 AVILARQNSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTD--GGLIAEEAKNF----GVEVVLRPAE 74 (225)
T ss_dssp EEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHT----TCEEEECCHH
T ss_pred EEEccCCCCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEeec--cchhhhhhhhh----cceeeeeccc
Confidence 799999988998 5 599999999999999999999987 688877664 34455565553 4444333221
Q ss_pred ---cccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCc
Q 020113 82 ---EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 82 ---~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~ 153 (331)
...+..+.+..+.+.+.... +.++.+.||..+ ..++..+++.+.+.+.+..+. ..+...+..... ++ +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~-~~ 151 (225)
T d1eyra_ 75 LASDTASSISGVIHALETIGSNS-GTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQI-NN-GE 151 (225)
T ss_dssp HHSTTCCHHHHHHHHHHHHTCCS-EEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEEC-SS-SC
T ss_pred cccccccchhhcccccccccccc-ceEEEeeccccccccccccccceeeccccccccceeeccccccccccccc-cc-cc
Confidence 22234566677777665443 388899999943 355999999888877765444 222233333333 33 44
Q ss_pred eeEeeecCC-------CCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHHHHH
Q 020113 154 VEKFVEKPK-------NFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYIT 225 (331)
Q Consensus 154 v~~~~ek~~-------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d~~~ 225 (331)
...+..... .+.....+.++|+++.+.+.....- -.++...++.+. ..+||+|++||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~~~~~-------------~~~~~~~~~i~~~~~~dIdt~eDl~~ 218 (225)
T d1eyra_ 152 YAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNCF-------------FIAPTKLYIMSHQDSIDIDTELDLQQ 218 (225)
T ss_dssp EEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHHHTSS-------------CCSSCEEEECCTTTTCCCCSHHHHHH
T ss_pred ccccccccccccccccCcceeeecceeEEeeHHHHHHcCCc-------------cCCCeEEEEcCccceECCCCHHHHHH
Confidence 444433211 1122356788999999877653110 012344555433 3579999999999
Q ss_pred HHHH
Q 020113 226 GLRL 229 (331)
Q Consensus 226 a~~~ 229 (331)
|...
T Consensus 219 ae~i 222 (225)
T d1eyra_ 219 AENI 222 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=1.2e-11 Score=102.42 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=122.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
+.|||+|.|.++|| | .|+|++++|+|||+|+++.+.+++ +++|+|++. .+.+.+...+ ++..+....
T Consensus 4 i~aiIpaR~~S~Rl-p-----~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~~----~~~~~~~~~ 71 (228)
T d1qwja_ 4 LAALVLARGGSKGI-P-----LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ----FGAQVHRRS 71 (228)
T ss_dssp EEEEEECCSCCSSS-S-----CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH----TTCEEEECC
T ss_pred EEEEeccCCCCCCC-C-----CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhhh----cCccccccc
Confidence 35999999999999 5 599999999999999999999987 778887764 3345555554 345554443
Q ss_pred CCccc---CChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE--ecCCCCceEEEEcCCcC
Q 020113 80 ETEPL---GTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM--VDEPSKYGVVVMEETTG 152 (331)
Q Consensus 80 ~~~~~---G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~--~~~~~~~~~v~~d~~~~ 152 (331)
..... ...+.+.......... +.++++.+|.. ...+++.+++.+.+.+.+..+. ...+..+........ .
T Consensus 72 ~~~~~~~~~~~~~i~~~~~~~~~~--~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~ 148 (228)
T d1qwja_ 72 SETSKDSSTSLDAIVEFLNYHNEV--DIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVR-E 148 (228)
T ss_dssp GGGSSTTCCHHHHHHHHHTTCTTC--SEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTT-C
T ss_pred cccccccchhhhhhhhcccccccc--ceeeeecccccccCchhhhhhhhhhhccCccccccccccccccchhhhhhcc-c
Confidence 22222 3345555555554322 27778889994 3456999999998888776555 222222211111110 0
Q ss_pred ceeEee----ecC---CCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 020113 153 KVEKFV----EKP---KNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYI 224 (331)
Q Consensus 153 ~v~~~~----ek~---~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d~~ 224 (331)
...... ..+ +.+.....+.++|+++.++++.-. + ...+...+..+. ...||+|++|+.
T Consensus 149 ~~~~~~~~~~~~~~~qd~~~~y~~ng~~~~~k~~~~~~~~---------~-----~~~k~~~~~i~~~~~idIDt~eD~~ 214 (228)
T d1qwja_ 149 VTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIEMGY---------L-----QGGKMAYYEMRAEHSVDIDVDIDWP 214 (228)
T ss_dssp CCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHHHTTC---------S-----SCSSEEEEECCGGGCCCHHHHCSHH
T ss_pred cccchhhhhhhccccccccceeeeeeEEEEEeHHHHhhCC---------c-----CCCCEEEEEcCccceECCCCHHHHH
Confidence 100000 001 011122456667877777665411 0 123456666643 356999999999
Q ss_pred HHHHHHHh
Q 020113 225 TGLRLYLD 232 (331)
Q Consensus 225 ~a~~~~l~ 232 (331)
.|.+.+..
T Consensus 215 ~Ae~~l~k 222 (228)
T d1qwja_ 215 IAEQRVLR 222 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776654
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.25 E-value=6.3e-11 Score=95.38 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=53.9
Q ss_pred CCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-------CcEEc
Q 020113 244 TGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-------GAVVL 315 (331)
Q Consensus 244 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~ 315 (331)
+++.|+++++|++++.||++|.|+ .++.|. ++.|+++|.+++++.+.+.+.||++|.||.++.|. +|+|+
T Consensus 93 ~g~~I~~~~~I~~~~~Ig~~~~I~--~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~Ig 170 (193)
T d3bswa1 93 AGILIMPYVVINAKAKIEKGVILN--TSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILG 170 (193)
T ss_dssp SCCEECTTCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cCceEeeeeeecCCceeeeccccc--cccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEEC
Confidence 345566666666666666666666 666663 67777777777777777777777777777777763 44445
Q ss_pred cCeEEccCccCCcc
Q 020113 316 PHKEIKSSIVNPEI 329 (331)
Q Consensus 316 ~~~~i~~~~~~~~~ 329 (331)
.++++.+++.+.++
T Consensus 171 agsvV~~dv~~~~~ 184 (193)
T d3bswa1 171 GGATLVKNQDEKGV 184 (193)
T ss_dssp TTCEECSCBCSCCE
T ss_pred CCCEECcCCCCCcE
Confidence 55555455544443
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.22 E-value=1.8e-11 Score=100.12 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
.+.||++|.||+++.|.++|.||++|.||.++++.++.|+++++|+.+.
T Consensus 103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~s 151 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRS 151 (210)
T ss_dssp SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTC
T ss_pred ceeeccccccccccccccCCcccCCcEeeCCccccccccccCcEEecCc
Confidence 4678888888888888766888888888888888777788887776544
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.16 E-value=8.9e-11 Score=94.51 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=69.1
Q ss_pred cCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcE
Q 020113 238 SSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAV 313 (331)
Q Consensus 238 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~ 313 (331)
+.+.|++++.|+ .+++|+++++|+++|.|| +++.|. +++|+++|.||++|++..++.++.+++||++|.| .++.
T Consensus 79 p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig--~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~ 156 (193)
T d3bswa1 79 KSALISPSAIVEENAGILIMPYVVINAKAKIE--KGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSC 156 (193)
T ss_dssp TTCEECTTSEECTTSCCEECTTCEECTTCEEC--TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred CCcEEeeeeEEccccCceEeeeeeecCCceee--eccccccccccceeeeccccccccccccccccceeeccccCCceee
Confidence 344455555553 356777777777778887 778884 7888999999999999988999999999999999 5899
Q ss_pred EccCeEEccCccCC
Q 020113 314 VLPHKEIKSSIVNP 327 (331)
Q Consensus 314 v~~~~~i~~~~~~~ 327 (331)
|.++++|+++....
T Consensus 157 I~~~v~Ig~~~~Ig 170 (193)
T d3bswa1 157 VLPNLSLADDSILG 170 (193)
T ss_dssp ECTTCEECTTCEEC
T ss_pred EcCCeEECCCCEEC
Confidence 99998888877654
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.1e-10 Score=94.12 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=59.7
Q ss_pred CccCCCceEecceEE--cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEcc------------------ceE
Q 020113 240 SKLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVEN------------------MTI 296 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~~------------------~~~ 296 (331)
+.++++++|+|++++ |.++.||++|.|+ .+|+|. ...||++|.||++++|.. .++
T Consensus 55 ~~iG~~~~I~p~~~i~~G~nv~IG~~~~I~--~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~ 132 (200)
T d1krra_ 55 ATVGENAWVEPPVYFSYGSNIHIGRNFYAN--FNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT 132 (200)
T ss_dssp SBCCSSCEECSCEEESCSTTEEECSSCEEC--SCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEE
T ss_pred CcCCCCCEEcCCEEEecCCccEECCccEEC--ceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEE
Confidence 468999999998888 6788999999999 778884 357899999999888754 146
Q ss_pred ECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 297 LGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 297 i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
||++|.||.+++| .++.|+++++|+++
T Consensus 133 Igd~v~IG~~~~I~~Gv~IG~~~vIgag 160 (200)
T d1krra_ 133 IGNNVWIGSHVVINPGVTIGDNSVIGAG 160 (200)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred EccCcccceeeecccccccCCCcEEeCC
Confidence 7777777776666 34444444444443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.10 E-value=2.1e-10 Score=86.78 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=48.2
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCC-------------------CEECCCcEEccceEECCCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWH-------------------STVGRWARVENMTILGEDV 301 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~-------------------~~ig~~~~i~~~~~i~~~~ 301 (331)
.|+++|.|.. +.| .+|+||++|.|+ +++.|+++++.++ +.||++|.|.+ ++|+++|
T Consensus 16 ~Ig~g~~I~~-~~i-~~s~IG~~~~Ig--~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~-~iIg~~~ 90 (135)
T d1yp2a1 16 VIGEGCVIKN-CKI-HHSVVGLRSCIS--EGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKR-AIIDKNA 90 (135)
T ss_dssp EECTTCEEEE-EEE-ESCEECTTCEEC--TTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEES-EEECTTC
T ss_pred EECCCCEEeC-CEE-eccccCCcEEEC--CCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEecc-ceecCCC
Confidence 4677777753 333 367788888888 6777776665544 67899999987 9999999
Q ss_pred EECcccEEc
Q 020113 302 HVADEVYSN 310 (331)
Q Consensus 302 ~i~~~~~i~ 310 (331)
+||+++.+.
T Consensus 91 ~IG~g~~i~ 99 (135)
T d1yp2a1 91 RIGDNVKII 99 (135)
T ss_dssp EECTTCEEC
T ss_pred EECCCcEEC
Confidence 999998884
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.10 E-value=1.7e-10 Score=97.42 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=9.3
Q ss_pred eEECCCcEECcccEEc
Q 020113 295 TILGEDVHVADEVYSN 310 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~ 310 (331)
+.||+++.|++++.+.
T Consensus 84 v~IG~~v~ig~~~~i~ 99 (262)
T d2jf2a1 84 VEIGDRNRIRESVTIH 99 (262)
T ss_dssp EEECSSCEECTTCEEE
T ss_pred EEECCeeeecceEecc
Confidence 3456666666666663
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.09 E-value=1.5e-10 Score=94.43 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=67.1
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-----CCEEcCCCEECCCcEEc----------------------
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-----SSIIGWHSTVGRWARVE---------------------- 292 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-----~s~i~~~~~ig~~~~i~---------------------- 292 (331)
.+|+++++|.|.++|..++.||++|.|+ .+|+|+ ...||++|.|+++|.|.
T Consensus 23 p~I~~~a~I~p~A~i~g~V~IG~~~~Ig--p~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 100 (210)
T d1qrea_ 23 PVIDPTAYIDPQASVIGEVTIGANVMVS--PMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGK 100 (210)
T ss_dssp CEECTTCEECTTCEEEESEEECTTCEEC--TTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTE
T ss_pred CccCCCCEECCCCEEecceEECCCCEEc--cCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccc
Confidence 3588888888888887788888888888 668884 36789999999888883
Q ss_pred -cceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 293 -NMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 293 -~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
..++||++|+||+++.|. ++.|++++.|+.+.
T Consensus 101 ~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs 134 (210)
T d1qrea_ 101 EYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQA 134 (210)
T ss_dssp EESEEECTTCEECTTCEEEEEEEECTTCEECTTC
T ss_pred ccceeeccccccccccccccCCcccCCcEeeCCc
Confidence 238899999999999985 68888888888765
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.08 E-value=2.3e-10 Score=90.38 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=14.0
Q ss_pred ccCCCceEecceEEcCCcEECCCcEEC
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIG 267 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~ 267 (331)
+|+++++|++.++|..++.||++|.|+
T Consensus 14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig 40 (172)
T d1xhda_ 14 KIASSAFIADYVTITGDVYVGEESSIW 40 (172)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEEC
T ss_pred EECCCcEECCCCEEeCCEEECCCcEec
Confidence 455555555555554445555555544
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.08 E-value=2e-10 Score=96.87 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=14.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEEC
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIG 267 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~ 267 (331)
+|+++|+|.|.+.|++++.||++|+|+
T Consensus 2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg 28 (259)
T d1j2za_ 2 KIAKTAIISPKAEINKGVEIGEFCVIG 28 (259)
T ss_dssp CBCTTCEECTTSEECTTCEECTTCEEC
T ss_pred cCCCCCEECCCCEECCCCEECCCCEEC
Confidence 345555555555555555555555555
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.07 E-value=2.7e-10 Score=96.11 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=3.6
Q ss_pred cCCCEECCCc
Q 020113 280 GWHSTVGRWA 289 (331)
Q Consensus 280 ~~~~~ig~~~ 289 (331)
|+++.||.+|
T Consensus 87 G~~v~ig~~~ 96 (262)
T d2jf2a1 87 GDRNRIRESV 96 (262)
T ss_dssp CSSCEECTTC
T ss_pred CCeeeecceE
Confidence 3333333333
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.05 E-value=3.6e-10 Score=95.29 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWAR 290 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~ 290 (331)
.+.|++++.|+++|+|+++++||++|.|+ ++++|. ++.||++|.|++++.
T Consensus 12 ~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~--~~v~I~~~t~IG~~~~i~~~~~ 62 (259)
T d1j2za_ 12 KAEINKGVEIGEFCVIGDGVKLDEGVKLH--NNVTLQGHTFVGKNTEIFPFAV 62 (259)
T ss_dssp TSEECTTCEECTTCEECTTCEECTTCEEC--TTCEECSEEEECTTCEECTTCE
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEEC--CCEEEeCCCEEeeecccCCccE
Confidence 34455555555555555555555555555 334443 344444444443333
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=4.9e-10 Score=88.57 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=20.9
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEE
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEI 320 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 320 (331)
+.||++|+||.+|.|.+++.||++|.||.++.+. +..|.|++++
T Consensus 89 ~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 89 AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV 133 (173)
T ss_dssp CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred eecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEE
Confidence 4444555555555554445555555555555443 3444444443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.98 E-value=7e-10 Score=83.85 Aligned_cols=66 Identities=21% Similarity=0.394 Sum_probs=55.1
Q ss_pred CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCC-------------------cEECcccEEcCcEEccC
Q 020113 257 GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGED-------------------VHVADEVYSNGAVVLPH 317 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~-------------------~~i~~~~~i~~~~v~~~ 317 (331)
+|.|+++|.|+ ++.+++|+||++|.||+++.|++ +++.++ ++||++|.|.+++|+.+
T Consensus 14 ~s~Ig~g~~I~---~~~i~~s~IG~~~~Ig~~~~I~~-~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~ 89 (135)
T d1yp2a1 14 DSVIGEGCVIK---NCKIHHSVVGLRSCISEGAIIED-SLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN 89 (135)
T ss_dssp EEEECTTCEEE---EEEEESCEECTTCEECTTCEEES-CEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT
T ss_pred eCEECCCCEEe---CCEEeccccCCcEEECCCCEEEc-CEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCC
Confidence 68888888885 36778999999999999999999 544433 78999999999999999
Q ss_pred eEEccCccC
Q 020113 318 KEIKSSIVN 326 (331)
Q Consensus 318 ~~i~~~~~~ 326 (331)
++|++++..
T Consensus 90 ~~IG~g~~i 98 (135)
T d1yp2a1 90 ARIGDNVKI 98 (135)
T ss_dssp CEECTTCEE
T ss_pred CEECCCcEE
Confidence 999888764
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.97 E-value=1.3e-09 Score=89.42 Aligned_cols=86 Identities=15% Similarity=0.238 Sum_probs=62.6
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccc--------eEECCCcEECcccE
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENM--------TILGEDVHVADEVY 308 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~--------~~i~~~~~i~~~~~ 308 (331)
..++|++++++ .+++|.-++.||++|.|. ..++|. .+.||++|.|+.++.|++. ++|+++|+||.++.
T Consensus 113 ~GayI~~~vVl-mps~VNigA~ig~~~mid--t~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~ 189 (274)
T d3tdta_ 113 QGAFIARNTVL-MPSYVNIGAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSE 189 (274)
T ss_dssp TTCEECTTCEE-CSEEECTTCEECTTCEEC--TTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCE
T ss_pred cCcEECCCcEE-eeeEeccccEEcCCcEEc--ccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCce
Confidence 34456666533 346777788888888888 778885 5678888888888888762 46889999999988
Q ss_pred E-cCcEEccCeEEccCccC
Q 020113 309 S-NGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 309 i-~~~~v~~~~~i~~~~~~ 326 (331)
+ .+.+|+.+++|+.++..
T Consensus 190 v~egv~Vg~~avi~~gv~i 208 (274)
T d3tdta_ 190 VVEGVIVEEGSVISMGVYL 208 (274)
T ss_dssp ECTTCEECTTCEECTTCEE
T ss_pred EecCEEecCceEeccceEE
Confidence 7 56667777766666543
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.95 E-value=1.5e-08 Score=89.01 Aligned_cols=177 Identities=15% Similarity=0.212 Sum_probs=119.1
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeC-CcchHHHHHHHHHH----c--CCCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKA----V--GVTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~----~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
+|+||||.|+||+. ..||.++|++ |+++++..++++.. + .+.-+++.+....+.+.++++++. .++..+
T Consensus 77 vv~LaGG~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~-~fg~~i 152 (378)
T d2icya2 77 VLKLNGGLGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYT-NSNVDI 152 (378)
T ss_dssp EEEEECCBSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGT-TSSSCE
T ss_pred EEEecCCcccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhc-cCCCce
Confidence 68899999999976 7899999996 78999999998874 2 355555555566789999998843 334444
Q ss_pred EEeeCC------------------------cccCChHHHHH-----HHhhccCCCCCcEEEEeCCeeccccHHHHHHHHh
Q 020113 76 TCSQET------------------------EPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR 126 (331)
Q Consensus 76 ~~~~~~------------------------~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~ 126 (331)
.+..|. .|.|.++.... .++.+....-+++.+.+.|.+....-..++..|.
T Consensus 153 ~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~~ 232 (378)
T d2icya2 153 HTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLI 232 (378)
T ss_dssp EEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHH
T ss_pred EEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHHHH
Confidence 433221 14566664443 2444444444599999999976544467788888
Q ss_pred hcCCceEEE-e--cC-CCCce-EEEEcCCcCceeEeeecCCCC--------CCCeEEEEEEEEChhhHhhc
Q 020113 127 GRGGEASIM-V--DE-PSKYG-VVVMEETTGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRI 184 (331)
Q Consensus 127 ~~~~~~~i~-~--~~-~~~~~-~v~~d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l 184 (331)
++++++++- + .. ...-| .+..+.. -++.++.|.|.+. .-.+.+++.++|+-+.++.+
T Consensus 233 ~~~~~~~~kvv~Kt~~dek~G~l~~~dg~-~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~ 302 (378)
T d2icya2 233 QNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKL 302 (378)
T ss_dssp HHTCSEEEEEEECCTTCCSSCEEEEETTE-EEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHH
T ss_pred hcCCcceeEEEecCCCCCceeEEEEECCc-eeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHH
Confidence 888888766 2 22 22334 4444433 4567776665431 12367999999999988765
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.92 E-value=2.5e-09 Score=86.01 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=34.8
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECC
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGR 287 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~ 287 (331)
+.++|++++.|+++++|++++.||++|.|+ +++.|+++.||++|.|..
T Consensus 13 ~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~--~~~~i~~~~IG~~~~I~~ 60 (196)
T d1g97a1 13 IDVEIASEVQIEANVTLKGQTKIGAETVLT--NGTYVVDSTIGAGAVITN 60 (196)
T ss_dssp TTCEECTTCEECTTCEEESSCEECTTCEEC--TTCEEESCEECTTCEECS
T ss_pred CCcEECCCCEECCCCEECCCcEECCCceEc--CceEeeeeecccCccccc
Confidence 345677777777777777778888888888 667777777777766643
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=6.5e-09 Score=83.56 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=49.1
Q ss_pred ccCCCceEecceEEc--CCcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|.++|+|. ..+.||++|.|+ +++.|. .++||++|+||.+|.|..++.||+
T Consensus 76 ~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig--~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~ 153 (200)
T d1krra_ 76 HIGRNFYANFNLTIVDDYTVTIGDNVLIA--PNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 153 (200)
T ss_dssp EECSSCEECSCEEEECSSCEEECSSCEEC--SSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred EECCccEECceEEEecCCCcEeCCCcccc--ceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCC
Confidence 355666666666663 345667777777 334432 357888888888888888888888
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
+|.||+++++.+.
T Consensus 154 ~~vIgagSvV~kd 166 (200)
T d1krra_ 154 NSVIGAGSIVTKD 166 (200)
T ss_dssp TCEECTTCEECSC
T ss_pred CcEEeCCCEEeeE
Confidence 8888888888643
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=1.1e-08 Score=81.00 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=19.0
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
++||++|+||.+|.|..++.||++|+||+++++.+
T Consensus 129 v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~k 163 (182)
T d1ocxa_ 129 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK 163 (182)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEECceEeeCceeeccCcEEECCCCEECCCCEEcc
Confidence 34555555555555555555555555555555543
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.75 E-value=1.8e-08 Score=80.75 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=23.3
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN 293 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~ 293 (331)
|++++.|+++++|+++++|++++.|| ++++|. +++|. +|.||+++.|.+
T Consensus 11 I~~~v~Ig~~~~I~~~vvI~~~v~IG--~~~~I~~~~~i~-~~~IG~~~~I~~ 60 (196)
T d1g97a1 11 IDIDVEIASEVQIEANVTLKGQTKIG--AETVLTNGTYVV-DSTIGAGAVITN 60 (196)
T ss_dssp ECTTCEECTTCEECTTCEEESSCEEC--TTCEECTTCEEE-SCEECTTCEECS
T ss_pred ECCCcEECCCCEECCCCEECCCcEEC--CCceEcCceEee-eeecccCccccc
Confidence 44444454445554445554455554 444443 34442 345555555443
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=1.6e-08 Score=80.01 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=16.4
Q ss_pred ceEECCCcEECcccEE-cCcEEccCeEEccCccCCc
Q 020113 294 MTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 294 ~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~~~ 328 (331)
++.||.+++|.++++| .+|+|+.++++..++...+
T Consensus 134 ~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kdvp~~~ 169 (182)
T d1ocxa_ 134 NVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNV 169 (182)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECSCBCSSE
T ss_pred eEeeCceeeccCcEEECCCCEECCCCEEccCCCCCe
Confidence 3333344444444444 3555555555555554433
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.72 E-value=3.5e-08 Score=80.89 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=43.6
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+++++++.|-..++||..|.||++|-|+ .++.|. .++|+++|.||.+|.|-.+++|+++++|+.|++|.
T Consensus 132 A~ig~~~midt~a~vgs~aqIG~~vhis--~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~ 209 (274)
T d3tdta_ 132 AYVDEGTMVDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLG 209 (274)
T ss_dssp CEECTTCEECTTEEECTTCEECTTCEEC--TTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cEEcCCcEEcccceecceeEECCCeEEC--CCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEe
Confidence 3455555555555555555555555555 444443 24577777777777777777777777777777775
Q ss_pred Cc
Q 020113 311 GA 312 (331)
Q Consensus 311 ~~ 312 (331)
.+
T Consensus 210 ~~ 211 (274)
T d3tdta_ 210 QS 211 (274)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.70 E-value=5.8e-08 Score=80.17 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=56.4
Q ss_pred cccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 236 KNSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 236 ~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..+.++|+++.+|. .+++|++++.||++|.|. .++.+. ..+||++|.||.|++|.++..||++++||
T Consensus 140 I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~--~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~Ig 217 (241)
T d1ssqa_ 140 IHPAAKIGHGIMFDHATGIVVGETSVIENDVSIL--QGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIG 217 (241)
T ss_dssp ECTTCEECSSCEESSCTTCEECTTCEECTTCEEC--TTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEEC
T ss_pred cccCCEEccCcccCccceEEEeccceecCCeeec--ccccccccccCCCCCCCccCCCeEECCCCEEcCCcEECCCCEEC
Confidence 34455566665553 255566666666666665 444442 26799999999999998889999999999
Q ss_pred cccEEcCcEEccCeE
Q 020113 305 DEVYSNGAVVLPHKE 319 (331)
Q Consensus 305 ~~~~i~~~~v~~~~~ 319 (331)
.|+++.+.+ .++++
T Consensus 218 AgsvV~kdV-p~~~v 231 (241)
T d1ssqa_ 218 ANSVVLNPV-PEYAT 231 (241)
T ss_dssp TTCEECSCB-CTTCE
T ss_pred CCCEECCCC-CCCCE
Confidence 999997653 44443
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.68 E-value=9.1e-09 Score=83.13 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
.++||++|+||.+|+|..++.||++|.||+++++.+
T Consensus 113 ~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~k 148 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK 148 (203)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CeEECCEEEECCceeEEeEEEEcCCCEEecCeEEee
Confidence 356777777777777777777777777777777754
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.61 E-value=3.6e-08 Score=79.49 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=20.4
Q ss_pred CcEEccceEECCCcEECcccEE-cCcEEccCeEEccCccC
Q 020113 288 WARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 288 ~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~ 326 (331)
.+.|+++|.||.+|+|.+++.| .+|+|+.++++..++..
T Consensus 113 ~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~ 152 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAP 152 (203)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCT
T ss_pred CeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCC
Confidence 3444444444444444445555 35666666666655544
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.52 E-value=1.4e-07 Score=73.93 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=18.8
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceE
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI 274 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i 274 (331)
+|+++++|.++++|..++.||++|.|+ .+++|
T Consensus 12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig--~~~~I 43 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVIGDVVLEEKTSVW--PSAVL 43 (173)
T ss_dssp EECTTCEECTTSEEEEEEEECTTCEEC--TTCEE
T ss_pred EECcCcEECCCCEEeCceEECCCCEEC--CCccc
Confidence 466666666666666566666666666 33444
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.51 E-value=2.1e-07 Score=72.81 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=50.8
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCC-----------------------------------CCceEeCCEEcC
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD-----------------------------------KHACISSSIIGW 281 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~-----------------------------------~~~~i~~s~i~~ 281 (331)
.+...|++.+.|.+++.||++|.|+++|+|+.. ..+.+.++.|++
T Consensus 16 g~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~ 95 (172)
T d1xhda_ 16 ASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKK 95 (172)
T ss_dssp CTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECT
T ss_pred CCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccccccccc
Confidence 456677777777777777777777777766421 223334455555
Q ss_pred CCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEE
Q 020113 282 HSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEI 320 (331)
Q Consensus 282 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 320 (331)
+++||.++.|.+++.||++|.||.++.|. +..|.+++++
T Consensus 96 ~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~ 135 (172)
T d1xhda_ 96 DALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA 135 (172)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred ceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEE
Confidence 66666666666666666666666666664 3455555444
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=2.1e-07 Score=74.76 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=15.8
Q ss_pred CccCCCceEecceEEcCCcEECCCcEEC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIG 267 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~ 267 (331)
..+++++.|+++|+|+++++||++|.|+
T Consensus 15 v~IG~~v~Ig~~vvI~~~v~IG~~~~I~ 42 (201)
T d2oi6a1 15 LTHGRDVEIDTNVIIEGNVTLGHRVKIG 42 (201)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEEC
T ss_pred EEECCCCEECCCCEECCceEECCCcEEC
Confidence 3455555555555555555555555555
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.44 E-value=2.2e-07 Score=75.00 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
.++||++|+||.+|.|..++.||++|+||.++++.+
T Consensus 108 ~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtk 143 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG 143 (208)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CEEEcCCeEECccccccCCeEeCCCCEEeCceEEee
Confidence 478999999999999999999999999999999964
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=3e-07 Score=73.80 Aligned_cols=68 Identities=28% Similarity=0.405 Sum_probs=43.7
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCC---------CCceEeCCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------KHACISSSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~---------~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
....+|+++++|+++++||++++|+++|+|++. ..+...++.++.+|.++.++.+...+.+++.+.++
T Consensus 18 G~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~ 94 (201)
T d2oi6a1 18 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVG 94 (201)
T ss_dssp CSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEE
T ss_pred CCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeeeeeeec
Confidence 456678888888888888888888888888743 22233456666666666666654433333333333
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.37 E-value=7.4e-07 Score=73.34 Aligned_cols=86 Identities=10% Similarity=0.135 Sum_probs=41.8
Q ss_pred ccCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-c--
Q 020113 237 NSSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-N-- 310 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~-- 310 (331)
.....|++++.|+++++|.. +.+||+++.|| +++.+. ++.++..-.... .+..+||++|.||.|+.| .
T Consensus 135 ~~g~~I~~~~~Ig~g~~i~h~~givig~~~~ig--~~~~i~~~v~~~~~~~~~~----~~~~~Ig~~v~IGaga~Ilg~v 208 (241)
T d1ssqa_ 135 AFDVDIHPAAKIGHGIMFDHATGIVVGETSVIE--NDVSILQGVTLGGTGKESG----DRHPKVREGVMIGAGAKILGNI 208 (241)
T ss_dssp HHSCEECTTCEECSSCEESSCTTCEECTTCEEC--TTCEECTTCEEECCSSSCS----SCSCEECTTCEECTTCEEESSC
T ss_pred heeeccccCCEEccCcccCccceEEEeccceec--CCeeecccccccccccCCC----CCCCccCCCeEECCCCEEcCCc
Confidence 34556667777777666643 55666666666 334432 333332211100 011445555555555544 2
Q ss_pred ----CcEEccCeEEccCccCCc
Q 020113 311 ----GAVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 311 ----~~~v~~~~~i~~~~~~~~ 328 (331)
+++|+.++++-+++...+
T Consensus 209 ~IG~~a~IgAgsvV~kdVp~~~ 230 (241)
T d1ssqa_ 209 EVGKYAKIGANSVVLNPVPEYA 230 (241)
T ss_dssp EECTTCEECTTCEECSCBCTTC
T ss_pred EECCCCEECCCCEECCCCCCCC
Confidence 455555555555554443
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.36 E-value=5.4e-07 Score=72.60 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=22.9
Q ss_pred CcEEccceEECCCcEECcccEE-cCcEEccCeEEccCccCCcc
Q 020113 288 WARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVNPEI 329 (331)
Q Consensus 288 ~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~~~~ 329 (331)
.++|+++|.||.+|+|.+++.| .+|+|+.++++-+++...++
T Consensus 108 ~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si 150 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI 150 (208)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcE
Confidence 3445555555555555555555 35666666666666554443
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.09 E-value=6.2e-05 Score=67.79 Aligned_cols=178 Identities=20% Similarity=0.224 Sum_probs=108.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHHc----------C--CCEEEEEeccChHHHHHHHHHh
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV----------G--VTEVVLAINYQPEVMLNFLKEF 67 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~----------g--i~~i~iv~~~~~~~i~~~~~~~ 67 (331)
+|+||||.|+||+- ..||.++|+ .++++++..++++.+. + +--+++.+....+.+++++++.
T Consensus 105 vvllaGG~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~~ 181 (501)
T d1jv1a_ 105 VLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKH 181 (501)
T ss_dssp EEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHT
T ss_pred EEEECCCccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHhc
Confidence 67889999999976 789999998 4889999988877652 2 4556666666678999999972
Q ss_pred hhccCeE---EEEeeCC---------------------cccCChHHHHH-----HHhhccCCCCCcEEEEeCCeecc-cc
Q 020113 68 EKKLEIK---ITCSQET---------------------EPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISE-YP 117 (331)
Q Consensus 68 ~~~~~~~---v~~~~~~---------------------~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~~-~~ 117 (331)
..+|.+ +.+..|. .|.|.++.+.. .++.+....-+++.+...|.+.. .-
T Consensus 182 -~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~ 260 (501)
T d1jv1a_ 182 -KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVA 260 (501)
T ss_dssp -GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTT
T ss_pred -cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcccccc
Confidence 222221 2222221 24555543322 23333322223899999999643 33
Q ss_pred HHHHHHHHhhcCCceEEE---ecC-CCCceEEEEcCCcCceeEeeecCC------CCC----CCeEEEEEEEEChhhHhh
Q 020113 118 LKQMIEFHRGRGGEASIM---VDE-PSKYGVVVMEETTGKVEKFVEKPK------NFV----GNKINAGIYLLNPSVLDR 183 (331)
Q Consensus 118 l~~~l~~~~~~~~~~~i~---~~~-~~~~~~v~~d~~~~~v~~~~ek~~------~~~----~~~~~~Giy~~~~~~l~~ 183 (331)
-..++-.+...++++.+- ..+ ...-|.+...+..-++.++.|-|. ... -...+++.++|+-++++.
T Consensus 261 Dp~~lG~~~~~~~~~~~kvv~k~~~~e~~G~l~~~dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~~fsl~fl~~ 340 (501)
T d1jv1a_ 261 DPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRD 340 (501)
T ss_dssp CHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHHHH
T ss_pred CHHHHHHHHhcccceeEEEEEcCCCCcccceEEEECCeEEEEEeccCCHHHHhhccCCCcccccccceeheeeEHHHHHH
Confidence 356778888888887666 222 234555544321123444443221 111 235788999999988865
Q ss_pred c
Q 020113 184 I 184 (331)
Q Consensus 184 l 184 (331)
+
T Consensus 341 ~ 341 (501)
T d1jv1a_ 341 V 341 (501)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.08 E-value=5.6e-06 Score=71.19 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=27.2
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEcc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVEN 293 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~ 293 (331)
+.+..++.|.+++.|++++.|+.++.|+ +++.|.++.|.+++.|+.+++|.+
T Consensus 64 A~V~~~a~I~~na~i~~~~~I~~~a~Ig--~n~~ig~a~I~~~a~I~~n~~i~~ 115 (320)
T d2f9ca1 64 AMAFAGTEITGNARITQPCTLYNNVRIG--DNVWIDRADISDGARISDNVTIQS 115 (320)
T ss_dssp CEECSSCEECTTCEECSSCEECSSCEEC--SSCEESSCEECSSEEECSSCEEES
T ss_pred cEECCCCEECCCCEECCCcEECCCcEEC--CcEEECCcEEEcCcEEeeeeeecC
Confidence 4455555555555555555555555555 444444444555555555555444
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.01 E-value=7.2e-06 Score=70.48 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=29.4
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEE
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHV 303 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i 303 (331)
..+.|..++.|.+.+.|+++++||++|.|+ . +.| .++.|+++|.|++++.+.+ +.+..++.|
T Consensus 68 ~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig--~-a~I~~~a~I~~n~~i~~~~~i~~-~~i~g~~~v 130 (320)
T d2f9ca1 68 AGTEITGNARITQPCTLYNNVRIGDNVWID--R-ADISDGARISDNVTIQSSSVREE-CAIYGDARV 130 (320)
T ss_dssp SSCEECTTCEECSSCEECSSCEECSSCEES--S-CEECSSEEECSSCEEESCEECSS-EEECSSCEE
T ss_pred CCCEECCCCEECCCcEECCCcEECCcEEEC--C-cEEEcCcEEeeeeeecCccEEee-eEEECCeEE
Confidence 444455555555555555555555555554 2 333 2445555555554444443 333333333
|
| >d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MM2497-like domain: Hypothetical protein MM2497 species: Methanosarcina mazei [TaxId: 2209]
Probab=96.77 E-value=0.0034 Score=49.60 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=61.3
Q ss_pred CeEEEEeC-CC-CcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVG-GF-GTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~-G~-g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (331)
|.|||+-- +. =|||.|. +.+.--.-.-+.|+.++++.+.++++..+++++..... .. ......+.
T Consensus 1 m~~iiPiK~~~aKTRL~~~---L~~~~r~~L~~~ml~~tl~~l~~~~~~~v~~vs~~~~~------~~--~~~~~~~~-- 67 (208)
T d2i5ea1 1 MRAVIPYKKAGAKSRLSPV---LSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG------LE--EMTEARVL-- 67 (208)
T ss_dssp CEEEEECCCTTTTGGGTTT---SCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT------CS--SCCSSEEE--
T ss_pred CeEEEecCCCCCccCcCcc---cCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCcHHH------HH--HhhcCCcc--
Confidence 88999852 33 2566552 11100000124599999999999999998888764321 01 11122332
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHH
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIE 123 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~ 123 (331)
.+ ..|..+++..+++.-. ++++++.+|+ +...++..+++
T Consensus 68 ~~--~~~L~~al~~a~~~~~----~~vliig~DlP~L~~~~l~~a~~ 108 (208)
T d2i5ea1 68 LD--EKDLNEALNRYLKEAE----EPVLIVMADLPLLSPEHIKEISS 108 (208)
T ss_dssp EC--CSCHHHHHHHHHHHCC----SCEEEECSCCTTCCHHHHHHHTT
T ss_pred cC--CCCHHHHHHHHHhcCC----CCEEEecCCcCcCCHHHHHHHHh
Confidence 22 3466677777766432 2899999999 56666776543
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.89 E-value=0.51 Score=38.86 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=66.8
Q ss_pred ceeCCc--chHHHHHHHHHHcCC----CEEEEEeccC-hHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 26 VDFANK--PMILHQIEALKAVGV----TEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi----~~i~iv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
+|.-|. ..|..+|+.+.+.-. .+|+||=+.. .....+.+.++.+.....+.++..+...|.+.+.-.++....
T Consensus 28 Ip~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~ 107 (328)
T d1xhba2 28 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR 107 (328)
T ss_dssp EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhhh
Confidence 344565 368899998876422 2666654322 122223333332233445666666677788999988888876
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcCCceE
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEAS 133 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~ 133 (331)
.+ .++++.+|.+...+ ++.+++.+.+....+.
T Consensus 108 gd---~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v 140 (328)
T d1xhba2 108 GQ---VITFLDAHCECTAGWLEPLLARIKHDRRTVV 140 (328)
T ss_dssp SS---EEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred cc---eeeecCcccccChhHHHHHHHHHhcCCCeEE
Confidence 54 88999999976555 8888888877666543
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.73 E-value=0.058 Score=42.27 Aligned_cols=103 Identities=11% Similarity=0.055 Sum_probs=63.4
Q ss_pred ceeCCc-chHHHHHHHHHHcCC-CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi-~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~ 103 (331)
+|.-|+ ..|..+|+.|.+... ++++||.+...+...+.+.+........+.+.. +..|.+.+...+++..+.+
T Consensus 9 i~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~--~~~g~~~a~n~~~~~a~ge--- 83 (265)
T d1omza_ 9 MQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKP--QTANKMRNRLQVFPEVETN--- 83 (265)
T ss_dssp EEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEE--CSSCCGGGGGSCCTTCCSS---
T ss_pred EEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEec--CCCCchhhhhhhHHhCCcC---
Confidence 455566 599999999987653 556666543332222223222222222233332 3457777777777776554
Q ss_pred cEEEEeCCeecccc-HHHHHHHHhhcCCceE
Q 020113 104 PFFVLNSDVISEYP-LKQMIEFHRGRGGEAS 133 (331)
Q Consensus 104 ~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~ 133 (331)
.++++.+|.+...+ ++.+++.+.+.+....
T Consensus 84 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 114 (265)
T d1omza_ 84 AVLMVDDDTLISAQDLVFAFSIWQQFPDQII 114 (265)
T ss_dssp EEEEECTTEEECHHHHHHHHHHHTTSTTSEE
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHhCCCcce
Confidence 89999999977665 8889988877665443
|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Probab=91.45 E-value=1.6 Score=34.07 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=66.7
Q ss_pred ceeCC-cchHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeC------CcccCChHHHHHHHhh
Q 020113 26 VDFAN-KPMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE------TEPLGTAGPLALARDK 96 (331)
Q Consensus 26 lpi~g-~pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~------~~~~G~~~al~~~~~~ 96 (331)
+|.-| ...|..+|+++.+.-.. +++|+-+...+...+.++++.+...+++.-... ....|.+.++-.+++.
T Consensus 7 ip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~ 86 (255)
T d1qg8a_ 7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEM 86 (255)
T ss_dssp EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccccccccc
Confidence 34434 47899999998875433 555554444567777787765544444322111 1355677788888888
Q ss_pred ccCCCCCcEEEEeCCeecccc-HHHHHHHHhhcCC
Q 020113 97 LIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 97 ~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~ 130 (331)
.+.+ .++++.+|.+...+ ++.+++.+.+...
T Consensus 87 a~g~---~i~~lD~Dd~~~p~~l~~~~~~~~~~~~ 118 (255)
T d1qg8a_ 87 AEGE---YITYATDDNIYMPDRLLKMVRELDTHPE 118 (255)
T ss_dssp CCCS---EEEEEETTEEECTTHHHHHHHHHHHCTT
T ss_pred cccc---cccccccccccccchHHHHHHHHHhCCC
Confidence 8654 88899999866555 8888888766544
|