Citrus Sinensis ID: 020129

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK

ccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHcccHHHHHHHHHccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHccEEEEcccccEEEEEEEccEEEEccccccEEEEEccccEEEccccccccccccEEccccccccHHHHHHHHHHHHccEEEcccccccEEEEEcccHHccccccccccEEEEEEcc

ccHHEEEccccccEEEccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccHHHcccccccEEEEEEEcccccccccccccHHHHHHHcccccHHHHHHHHHcccEEEEEccccccccccccccHHHHHccccHHHHHHHHHHcccEEEEEccccEEEEEccccEEEEccccccEEEEEcEEEEcccccccHccccccEEEcccccccHHHHHHHHHHHHHHccccccccccEEEEEHHHHHHcccccccccEEEEEEcc

madhfieikipqqrnynninnscpfpsvlspnpattATVSRLAEKVRTQKPFLDSLLLKAGSVlfrgfddvktaKEFNDVVEafgyeelpyvggaaprtnivgrvftanesppdqkipfhhemaqvpefpsklfffcevepgsggetpIVLSHIVYERMKHKYPDFVEQLEQHGLIYTrvlgekddpsspigrgwkstflTEDKSIAEERAARLGMKLewmedggvktimgpipaikydesrqRKIWFNSMVAAYtgwkddrndpvkavtfgngkplpadIVHDCLNIleeesvaipwqkgdvlLIDNWAVLHarrsfnpprRILASLCK

MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRvlgekddpsspigrgwkstfltedksIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAytgwkddrndPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHarrsfnpprrilaslck

*****IEIKI*****YNNINNSC******************LAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTA**********FHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLG***********GWKSTFLTE***IA*ERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSF************

**DHFIEIKIPQQ******NNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK

*ADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLCK

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		330	2.2.26 [Sep-21-2011]
Q9LIG0		330	Clavaminate synthase-like	yes	no	0.972	0.972	0.736	1e-145

>sp\|Q9LIG0\|Y3136_ARATH Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1	Back alignment and function desciption

 Score =  514 bits (1323), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/330 (73%), Positives = 285/330 (86%), Gaps = 9/330 (2%)

Query: 5   FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKA 60
            +E  IPQQ++Y     S PFP+V+SP  A+      ++    + ++TQK +LDSLL ++
Sbjct: 6   LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61

Query: 61  GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
           G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct: 62  GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120

Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
           HEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct: 121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180

Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE 240
           LGE DDPSSPIGRGWKSTFLT DK++AE+RA  LGMKLEW EDGG KT+MGPIPAIKYDE
Sbjct: 181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDE 240

Query: 241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQK 300
           SR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE VA+PWQ+
Sbjct: 241 SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQR 300

Query: 301 GDVLLIDNWAVLHARRSFNPPRRILASLCK 330
           GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct: 301 GDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		330
224054408		327	predicted protein [Populus trichocarpa]	0.990	1.0	0.824	1e-161
255549820		322	conserved hypothetical protein [Ricinus	0.975	1.0	0.775	1e-151
359806448		323	uncharacterized protein LOC100797326 [Gl	0.978	1.0	0.754	1e-147
225442460		325	PREDICTED: clavaminate synthase-like pro	0.981	0.996	0.755	1e-145
297743187		355	unnamed protein product [Vitis vinifera]	0.981	0.912	0.755	1e-145
15232542		330	clavaminate synthase-like protein [Arabi	0.972	0.972	0.736	1e-143
297830838		330	predicted protein [Arabidopsis lyrata su	0.984	0.984	0.728	1e-142
449447823		324	PREDICTED: clavaminate synthase-like pro	0.972	0.990	0.746	1e-138
357454785		325	Clavaminate synthase-like protein [Medic	0.972	0.987	0.696	1e-137
195605474		325	syringomycin biosynthesis enzyme [Zea ma	0.981	0.996	0.691	1e-133

>gi\|224054408\|ref\|XP_002298245.1\| predicted protein [Populus trichocarpa] gi\|222845503\|gb\|EEE83050.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/330 (82%), Positives = 303/330 (91%), Gaps = 3/330 (0%)

Query: 1   MADHFIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKA 60
           M+  F EI+I  Q++Y+NI  S PFPSVLSPNP +++T+S   + +  QKPFLDSLLLK 
Sbjct: 1   MSSSFKEIQIQHQKHYSNIP-SFPFPSVLSPNPFSSSTLSFFTDSIIAQKPFLDSLLLKT 59

Query: 61  GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
           G++LFRGFD V TAK+FNDVVEAFG+EELPYVGGAAPRTN+VGRVFTANESPPDQKIPFH
Sbjct: 60  GAILFRGFD-VNTAKDFNDVVEAFGFEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFH 118

Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
           HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSH+VYERMK +YPDFVE++E+HGLIYTRV
Sbjct: 119 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHVVYERMKERYPDFVEKIEEHGLIYTRV 178

Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE 240
           LGE+DDPSSPIGRGWKSTFLT DKS+AE+RAA+LGM LEW ED GVKTIMGPIPAIKYD+
Sbjct: 179 LGEEDDPSSPIGRGWKSTFLTNDKSVAEQRAAKLGMTLEWFED-GVKTIMGPIPAIKYDK 237

Query: 241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQK 300
           SR RKIWFNSMVAAYTGWKD RNDPVKAVTFG+G+PLP DI+HDCL ILEEES+AIPWQK
Sbjct: 238 SRNRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGQPLPGDIIHDCLKILEEESLAIPWQK 297

Query: 301 GDVLLIDNWAVLHARRSFNPPRRILASLCK 330
           GDVLLIDNWAVLHARRSFNPPRR+LASLCK
Sbjct: 298 GDVLLIDNWAVLHARRSFNPPRRVLASLCK 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255549820\|ref\|XP_002515961.1\| conserved hypothetical protein [Ricinus communis] gi\|223544866\|gb\|EEF46381.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|359806448\|ref\|NP_001240991.1\| uncharacterized protein LOC100797326 [Glycine max] gi\|255635574\|gb\|ACU18137.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|225442460\|ref\|XP_002283642.1\| PREDICTED: clavaminate synthase-like protein At3g21360 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297743187\|emb\|CBI36054.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|15232542|ref|NP_188773.1| clavaminate synthase-like protein [Arabidopsis thaliana] gi|73921104|sp|Q9LIG0.1|Y3136_ARATH RecName: Full=Clavaminate synthase-like protein At3g21360 gi|56967335|pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|56967336|pdb|1Y0Z|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|150261485|pdb|2Q4A|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|150261486|pdb|2Q4A|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At3g21360 gi|9294683|dbj|BAB03049.1| syringomycin biosynthesis enzyme-like protein [Arabidopsis thaliana] gi|26450615|dbj|BAC42419.1| unknown protein [Arabidopsis thaliana] gi|182623791|gb|ACB88834.1| At3g21360 [Arabidopsis thaliana] gi|332642979|gb|AEE76500.1| clavaminate synthase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297830838\|ref\|XP_002883301.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297329141\|gb\|EFH59560.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449447823\|ref\|XP_004141667.1\| PREDICTED: clavaminate synthase-like protein At3g21360-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357454785\|ref\|XP_003597673.1\| Clavaminate synthase-like protein [Medicago truncatula] gi\|355486721\|gb\|AES67924.1\| Clavaminate synthase-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|195605474\|gb\|ACG24567.1\| syringomycin biosynthesis enzyme [Zea mays] gi\|223948315\|gb\|ACN28241.1\| unknown [Zea mays] gi\|223950165\|gb\|ACN29166.1\| unknown [Zea mays] gi\|414875921\|tpg\|DAA53052.1\| TPA: Syringomycin biosynthesis enzyme [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		330
TAIR\|locus:2089423		330	AT3G21360 [Arabidopsis thalian	0.966	0.966	0.739	6e-135
ASPGD\|ASPL0000041251		401	AN2698 [Emericella nidulans (t	0.7	0.576	0.289	3.5e-18

TAIR\|locus:2089423 AT3G21360 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
 Identities = 244/330 (73%), Positives = 287/330 (86%)

Query:     6 IEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLA-----EKVRTQKPFLDSLLLKA 60
             +E  IPQQ++Y     S PFP+V+SP P+ +  +  L+     + ++TQK +LDSLL ++
Sbjct:     7 VETPIPQQKHYE----SKPFPAVISP-PSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61

Query:    61 GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
             G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct:    62 GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120

Query:   121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
             HEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct:   121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180

Query:   181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE 240
             LGE DDPSSPIGRGWKSTFLT DK++AE+RA  LGMKLEW EDGG KT+MGPIPAIKYDE
Sbjct:   181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDE 240

Query:   241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQK 300
             SR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE VA+PWQ+
Sbjct:   241 SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQR 300

Query:   301 GDVLLIDNWAVLHARRSFNPPRRILASLCK 330
             GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct:   301 GDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

ASPGD\|ASPL0000041251 AN2698 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LIG0	Y3136_ARATH	1, ., -, ., -, ., -	0.7363	0.9727	0.9727	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		330
PLN00139		320	PLN00139, PLN00139, hypothetical protein; Provisio	4e-95
pfam02668		215	pfam02668, TauD, Taurine catabolism dioxygenase Ta	8e-21
cd00250		262	cd00250, CAS_like, Clavaminic acid synthetase (CAS	2e-05
TIGR02410		362	TIGR02410, carnitine_TMLD, trimethyllysine dioxyge	6e-05
TIGR02409		366	TIGR02409, carnitine_bodg, gamma-butyrobetaine hyd	0.004

>gnl\|CDD\|165707 PLN00139, PLN00139, hypothetical protein; Provisional	Back alignment and domain information

 Score =  284 bits (729), Expect = 4e-95
 Identities = 131/306 (42%), Positives = 188/306 (61%), Gaps = 10/306 (3%)

Query: 26  PSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFG 85
           P VL P     +    L   ++  K + + +L+K  +VL RGFD VK A++FND++EAFG
Sbjct: 24  PLVLQPPEPNKSDTESLVSALKQNKDWFEQMLIKNSAVLLRGFD-VKNAEDFNDIIEAFG 82

Query: 86  YEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGG 145
           ++++ YVG  APRT++  R++TANE P  + I +HHEM  + E P K+  FCE+ P  GG
Sbjct: 83  WDDIRYVG-PAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPEGG 141

Query: 146 ETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKS 205
           +TP V S  V ERM  ++P+ VE++E  GL YT     K+D SS  GRGW+  F T DK+
Sbjct: 142 QTPFVPSFRVTERMLEEFPEAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKA 201

Query: 206 IAEERAARLGMKLEWMEDGGVKTIMGPIPAIK-YDESRQRKIWFNSMVAAYTGWKDDRND 264
            AE RA  LGM +EW+ +GGVKTI+GP    K +D  + R++WFN++V  +         
Sbjct: 202 EAERRAKALGMDMEWLPNGGVKTILGPRSLTKVFDGRKGRRMWFNTVVGMH-------GK 254

Query: 265 PVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRI 324
              +    +G  +P + V  C  I+EEES+   W+KGDVL +DN A+LH RR   PPR++
Sbjct: 255 ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNLALLHGRRPSLPPRKV 314

Query: 325 LASLCK 330
           L + CK
Sbjct: 315 LVATCK 320

Length = 320

>gnl\|CDD\|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	Back alignment and domain information

>gnl\|CDD\|238154 cd00250, CAS_like, Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases	Back alignment and domain information

>gnl\|CDD\|233855 TIGR02410, carnitine_TMLD, trimethyllysine dioxygenase	Back alignment and domain information

>gnl\|CDD\|233854 TIGR02409, carnitine_bodg, gamma-butyrobetaine hydroxylase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		330
PLN00139		320	hypothetical protein; Provisional	100.0
PRK09553		277	tauD taurine dioxygenase; Reviewed	100.0
TIGR02410		362	carnitine_TMLD trimethyllysine dioxygenase. Member	100.0
TIGR02409		366	carnitine_bodg gamma-butyrobetaine hydroxylase. Me	100.0
PF02668		258	TauD: Taurine catabolism dioxygenase TauD, TfdA fa	100.0
cd00250		262	CAS_like Clavaminic acid synthetase (CAS) -like; C	99.98
COG2175		286	TauD Probable taurine catabolism dioxygenase [Seco	99.97
KOG3888		407	consensus Gamma-butyrobetaine,2-oxoglutarate dioxy	99.94
KOG3889		371	consensus Predicted gamma-butyrobetaine,2-oxogluta	99.89
PRK02963		316	carbon starvation induced protein; Validated	99.86
PF08943		297	CsiD: CsiD; InterPro: IPR015038 This group of prot	98.71

>PLN00139 hypothetical protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.5e-68  Score=494.55  Aligned_cols=312  Identities=41%  Similarity=0.752  Sum_probs=278.9

Q ss_pred             ceeecCCCccccCCCCCCCCCceEEecCCCCCCchHHHHHHHhhhHHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHh
Q 020129            5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAF   84 (330)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~f   84 (330)
                      |..-++++++..+    +.++|+||.|......+.+++.+|++..+++|+++|.+||+|+||||+ +.++++|.+|+++|
T Consensus         7 ~~~~~~~~~~~~~----~~~~p~vi~~~~~~~~~~~~l~~~~~~~~~~l~~~L~~hGavlfRG~~-i~~~~~f~~~a~~f   81 (320)
T PLN00139          7 FKVGKCEGQKVVD----GETMPLVLQPPEPNKSDTESLVSALKQNKDWFEQMLIKNSAVLLRGFD-VKNAEDFNDIIEAF   81 (320)
T ss_pred             eeeccccCcccCC----CCCCCeEEecCcccccchhhHHHHHHHHHHHHHHHHHHCCEEEECCCC-CCCHHHHHHHHHHh
Confidence            4555678888777    889999999987433466679999999999999999999999999999 77899999999999


Q ss_pred             CCCCCCCccCCCCceeecCccccCCCCCCCCCcccccCCCCCCCCCceEEecccccCCCCCccccccHHHHHHHhhhhCc
Q 020129           85 GYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYP  164 (330)
Q Consensus        85 G~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~~H~D~sy~~~~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~p  164 (330)
                      |....+|.+ ..+|..+.+.|++++++|+...|+||+|++|.+.||.+++|||+++|+.||+|+|||+++||+.|+++.|
T Consensus        82 g~~~~~y~~-~~~r~~v~~~v~t~te~P~~~~i~~H~E~sy~~~pP~~~~f~C~~~p~~GGeT~~aD~~~v~~~L~~~~p  160 (320)
T PLN00139         82 GWDDIRYVG-PAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPEGGQTPFVPSFRVTERMLEEFP  160 (320)
T ss_pred             CccccccCC-CCCcccccccEecCCCCCccccccccccccCccCCCceEEEEecccCCCCCCCeeecHHHHHHHhhhhCH
Confidence            998778887 4678878889999889988889999999999999999999999999999999999999999999998889


Q ss_pred             hHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhHHHHHHHHhCCcEEEecCCceEEEE-eeeceEEec-CCC
Q 020129          165 DFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIM-GPIPAIKYD-ESR  242 (330)
Q Consensus       165 el~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~P~v~~h-p~T  242 (330)
                      +++++|+++||+|.++++......++.|++|+++|+|+|++|||++|++.|++++|++|| .+.+. +..|+++.| |.|
T Consensus       161 ~~~e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~~~~~~g~~~eW~~dg-~l~~~~~~~~~~~~~~~~t  239 (320)
T PLN00139        161 EAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAERRAKALGMDMEWLPNG-GVKTILGPRSLTKVFDGRK  239 (320)
T ss_pred             HHHHHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHHHHHHcCCeEEEcCCC-cEEEEEeeccceeccCCCC
Confidence            999999999999999887654334567799999999999999999999999999999998 54444 566777765 599


Q ss_pred             CceEEEecchhhccCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHhhceeecccCCCCEEEEecccccccCCCCCCCc
Q 020129          243 QRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPR  322 (330)
Q Consensus       243 G~~~~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~W~~GDvli~DN~~vlHgR~~f~g~R  322 (330)
                      |+++|||++..+|..       .+..++||||++|+.++|++|.+++++.++.++||+||||++||+++||||.||+|+|
T Consensus       240 g~~~wFN~~~~~h~~-------~~~~~~fGDGs~i~~~~l~~i~~~~~~~~~~~~Wq~GDvl~iDN~~~~HGR~pf~g~R  312 (320)
T PLN00139        240 GRRMWFNTVVGMHGK-------ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNLALLHGRRPSLPPR  312 (320)
T ss_pred             CCEEEeechhhhhcc-------CCCCceecCCCcCCHHHHHHHHHHHHHhhccCCCCCCCEEEEeChhhhcCCCCCCCCc
Confidence            999999999887642       2345789999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeccC
Q 020129          323 RILASLCK  330 (330)
Q Consensus       323 ~il~~~~~  330 (330)
                      ||||+|++
T Consensus       313 rvlv~m~~  320 (320)
T PLN00139        313 KVLVATCK  320 (320)
T ss_pred             eEEEEecC
Confidence            99999985

>PRK09553 tauD taurine dioxygenase; Reviewed	Back alignment and domain information

>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase	Back alignment and domain information

>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase	Back alignment and domain information

>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases	Back alignment and domain information

>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases	Back alignment and domain information

>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]	Back alignment and domain information

>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]	Back alignment and domain information

>PRK02963 carbon starvation induced protein; Validated	Back alignment and domain information

>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		330
1y0z_A		330	X-Ray Structure Of Gene Product From Arabidopsis Th		1e-146

>pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g21360 Length = 330

Back alignment and structure

Iteration: 1

Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust. Identities = 243/330 (73%), Positives = 285/330 (86%), Gaps = 9/330 (2%) Query: 5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKA 60 +E IPQQ++Y S PFP+V+SP A+ ++ + ++TQK +LDSLL ++ Sbjct: 6 LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61 Query: 61 GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120 G+VLFRGF V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH Sbjct: 62 GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120 Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180 HEMAQV EFPSKLFF+CE+EP GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV Sbjct: 121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180 Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE 240 LGE DDPSSPIGRGWKSTFLT DK++AE+RA LGMKLEW EDGG KT+MGPIPAIKYDE Sbjct: 181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDE 240 Query: 241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQK 300 SR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE VA+PWQ+ Sbjct: 241 SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQR 300 Query: 301 GDVLLIDNWAVLHARRSFNPPRRILASLCK 330 GDVLLIDNWAVLH+RR F+PPRR+LASLCK Sbjct: 301 GDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330

PyMOL of 1y0z

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		330
2q4a_A		330	Clavaminate synthase-like protein AT3G21360; ensem	4e-97
2og5_A		357	Putative oxygenase; non-ribosomal peptide synthesi	3e-07
3eat_X		293	Pyoverdine biosynthesis protein PVCB; paerucumarin	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2wbq_A		358	L-arginine beta-hydroxylase; oxidoreductase, non-h	3e-06
1ds1_A		324	Clavaminate synthase 1; oxygenase, trifunctional e	3e-06
1jr7_A		311	GABT protein, hypothetical 37.4 kDa protein in ILE	6e-04
1nx8_A		273	CARC, carbapenem synthase; jelly roll, unknown fun	7e-04

>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha-ketoglutarat dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* Length = 357	Back alignment and structure

>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} Length = 293	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A* Length = 358	Back alignment and structure

>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A* Length = 324	Back alignment and structure

>1jr7_A GABT protein, hypothetical 37.4 kDa protein in ILEY-GABD interg region; gamma amino-butyric acid metabolism, GABA; 2.00A {Escherichia coli} SCOP: b.82.2.3 PDB: 2r6s_A* Length = 311	Back alignment and structure

>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A* Length = 273	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		330
2q4a_A		330	Clavaminate synthase-like protein AT3G21360; ensem	100.0
1oih_A		301	Putative alkylsulfatase ATSK; non-heme Fe(II) alph	100.0
1otj_A		283	Alpha-ketoglutarate-dependent taurine dioxygenase;	100.0
3pvj_A		277	Alpha-ketoglutarate-dependent taurine dioxygenase;	100.0
1nx8_A		273	CARC, carbapenem synthase; jelly roll, unknown fun	100.0
3r1j_A		301	Alpha-ketoglutarate-dependent taurine dioxygenase;	100.0
3eat_X		293	Pyoverdine biosynthesis protein PVCB; paerucumarin	100.0
3o2g_A		388	Gamma-butyrobetaine dioxygenase; gamma-butyrobetai	100.0
2og5_A		357	Putative oxygenase; non-ribosomal peptide synthesi	99.96
1ds1_A		324	Clavaminate synthase 1; oxygenase, trifunctional e	99.95
2wbq_A		358	L-arginine beta-hydroxylase; oxidoreductase, non-h	99.95
1jr7_A		311	GABT protein, hypothetical 37.4 kDa protein in ILE	99.91

>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*	Back alignment and structure

>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A	Back alignment and structure

>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*	Back alignment and structure

>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*	Back alignment and structure

>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A	Back alignment and structure

>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa}	Back alignment and structure

>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A	Back alignment and structure

>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha-ketoglutarat dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A*	Back alignment and structure

>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A*	Back alignment and structure

>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A*	Back alignment and structure

>1jr7_A GABT protein, hypothetical 37.4 kDa protein in ILEY-GABD interg region; gamma amino-butyric acid metabolism, GABA; 2.00A {Escherichia coli} SCOP: b.82.2.3 PDB: 2r6s_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		330
d1y0za_		327	b.82.2.8 (A:) Clavaminate synthase-like protein At	2e-88
d1nx4a_		271	b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia c	1e-17
d1ds1a_		323	b.82.2.2 (A:) Clavaminate synthase {Streptomyces c	3e-17
d1jr7a_		311	b.82.2.3 (A:) Gab protein (hypothetical protein Yg	8e-05
d1oiha_		288	b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudo	4e-04
d1otja_		281	b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygen	4e-04

>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 327	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Clavaminate synthase-like protein At3g21360
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  266 bits (680), Expect = 2e-88
 Identities = 243/330 (73%), Positives = 284/330 (86%), Gaps = 9/330 (2%)

Query: 5   FIEIKIPQQRNYNNINNSCPFPSVLSPN----PATTATVSRLAEKVRTQKPFLDSLLLKA 60
            +E  IPQQ++Y     S PFP+V+SP     P    ++    + ++TQK +LDSLL ++
Sbjct: 3   LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 58

Query: 61  GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
           G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct: 59  GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 117

Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
           HEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct: 118 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 177

Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE 240
           LGE DDPSSPIGRGWKSTFLT DK++AE+RA  LGMKLEW EDGG KT+MGPIPAIKYDE
Sbjct: 178 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDE 237

Query: 241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQK 300
           SR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE VA+PWQ+
Sbjct: 238 SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQR 297

Query: 301 GDVLLIDNWAVLHARRSFNPPRRILASLCK 330
           GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct: 298 GDVLLIDNWAVLHSRRPFDPPRRVLASLCK 327

PyMOL of d1y0za_

>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]} Length = 271	Back information, alignment and structure

>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 323	Back information, alignment and structure

>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]} Length = 311	Back information, alignment and structure

>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]} Length = 288	Back information, alignment and structure

>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]} Length = 281	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		330
d1y0za_		327	Clavaminate synthase-like protein At3g21360 {Thale	100.0
d1oiha_		288	Putative alkylsulfatase AtsK {Pseudomonas putida [	100.0
d1otja_		281	Taurine/alpha-ketoglutarate dioxygenase TauD {Esch	100.0
d1nx4a_		271	Carbapenem synthase, CarC {Erwinia carotovora [Tax	100.0
d1ds1a_		323	Clavaminate synthase {Streptomyces clavuligerus [T	99.94
d1jr7a_		311	Gab protein (hypothetical protein YgaT) {Escherich	99.77

>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: gamma-Butyrobetaine hydroxylase
domain: Clavaminate synthase-like protein At3g21360
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-65  Score=477.95  Aligned_cols=321  Identities=76%  Similarity=1.327  Sum_probs=294.2

Q ss_pred             ceeecCCCccccCCCCCCCCCceEEecCCCC----CCchHHHHHHHhhhHHHHHHHHHhcCeEEEeCCCCCCCHHHHHHH
Q 020129            5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDV   80 (330)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~   80 (330)
                      .+.-.+|.++..+    +.+||++|+|.+..    ..+.+.+.+|.++++++|+++|.+||+|+||||+ +.++++|.+|
T Consensus         3 ~~~~~~~~~~~~~----~~~~p~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~GvvlfRg~~-l~~~~~f~~f   77 (327)
T d1y0za_           3 LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVLFRGFP-VNSADDFNDV   77 (327)
T ss_dssp             CEECCCSSCEEET----TEEESEEEECC------CCCCHHHHHHHHHHTHHHHHHHHHHHSEEEECSSC-CCSHHHHHHH
T ss_pred             cccCCCCchhccC----CCCCCeEEecCCCCCCccccChhhhhHHHHHHHHHHHHHHHHCCEEEECCCC-CCCHHHHHHH
Confidence            4567889999998    99999999998742    4677888999999999999999999999999999 8789999999


Q ss_pred             HHHhCCCCCCCccCCCCceeecCccccCCCCCCCCCcccccCCCCCCCCCceEEecccccCCCCCccccccHHHHHHHhh
Q 020129           81 VEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMK  160 (330)
Q Consensus        81 ~~~fG~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~~H~D~sy~~~~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~  160 (330)
                      +++||....+|.++..+|..+.++|+++++.|+...+.||+|++|.+.||.+++|||+++|..||+|.|||++++|+.|+
T Consensus        78 ~~~fG~~~~~~~~~~~~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~~pP~~~~l~c~~~p~~GGeT~f~d~~~ay~~L~  157 (327)
T d1y0za_          78 VEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMK  157 (327)
T ss_dssp             HHHHCCCBCCCCSSSCCEEEEETTEEEECCSCTTSCEEEECTTTTSSSCCSEEEEEEEECCSEECCCCEEEHHHHHHHHH
T ss_pred             HHHhCCcccCccCCCCCccccCCceecCCCCCCccceecccCCccccCCCceEEEEeeecCCCCCCCEEEeHHHHHHhcC
Confidence            99999888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhHHHHHHHHhCCcEEEecCCceEEEEeeeceEEecC
Q 020129          161 HKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE  240 (330)
Q Consensus       161 ~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp  240 (330)
                      ++.|+++++|+++++.|.++++...++....+.+|+..|+++|+.+++.++++.+++++|.+++........+|+|++||
T Consensus       158 ~~~~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~~~f~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~p~v~~hP  237 (327)
T d1y0za_         158 DKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDE  237 (327)
T ss_dssp             HHCHHHHHHHHHHCEEEEEEECSSBCTTSTTCCCHHHHTTCSCHHHHHHHHHHTTCEEEECTTSCEEEEEEEECSCEEET
T ss_pred             hhchhhhhhceecceeeEeecccccccccccccchhhhcccccHHHHHHHhhhccccccccccccccceeeccccEEeCC
Confidence            99999999999999999999987666666678999999999999999999999999999999885555667799999999


Q ss_pred             CCCceEEEecchhhccCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHhhceeecccCCCCEEEEecccccccCCCCCC
Q 020129          241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNP  320 (330)
Q Consensus       241 ~TG~~~~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~W~~GDvli~DN~~vlHgR~~f~g  320 (330)
                      .||+++|||+....+..|.......+..+.||||++|+.+++++|.+++.+++|+|+||+||||||||+++||||++|+|
T Consensus       238 ~tg~k~~f~~~~~~~~~~~~~~~~~~~~~~fgDG~~i~~~ll~~i~~~~~~~~~~~~Wq~GDlvi~DN~~~lHgR~~f~g  317 (327)
T d1y0za_         238 SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLHSRRPFDP  317 (327)
T ss_dssp             TTTEEECCSCHHHHHHHCCBTTBCGGGTEEETTSCCCCHHHHHHHHHHHHHHCBCCCCCTTCEEEEETTTEEEEECCEES
T ss_pred             CCccceeeccceeEEeecccccccchhhccccCCccchHHHHHHHHHhCcceEEEeecCCCCEEEEecchhhhCCCCCCC
Confidence            99999999998877777766655667788999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeeccC
Q 020129          321 PRRILASLCK  330 (330)
Q Consensus       321 ~R~il~~~~~  330 (330)
                      +|||+|+|++
T Consensus       318 ~Rrv~~~l~~  327 (327)
T d1y0za_         318 PRRVLASLCK  327 (327)
T ss_dssp             CCEEEEEEEC
T ss_pred             CceEEEEecC
Confidence            9999999974

PyMOL of d1y0za_

>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure