Citrus Sinensis ID: 020141

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccEEEcccccccHcccccHEEEEEEcccccccccccccHEEHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcc
maaksqivtgftmpmtpapsssssssssslcmvkkplttsffnggvtrlriapssrshcyrqgggalntRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKelsgsskkgelppgraaasstntafpfrDAEIEKELNELRQRAKDF
maaksqivtgftmpmtpapssssssssssLCMVKKPlttsffnggvtrlriapssrshcyRQGGGALNTRMNLFDRLARVVKSYANAilssfedpEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKaqldqqknvVNNLVSNTRLLESKiqearskkdtlKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLetssvdddlANLKKElsgsskkgelppgraaasstntafpfrdAEIEKELNELRQRAKDF
MAAKSQIVTGFTMPMTPAPssssssssssLCMVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANlkkelsgsskkgelPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF
******************************CMVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK**************************************************************************************************************************************************************************************************************************
********************************************************************TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA******************WYRKAQLALQKGEEDLAREALKRRK**************************************************************************KMEEKVLTMES*************************************************************************RQ*****
MAAKSQIVTGFTMPM****************MVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS**************SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE******************TKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKE********************NTAFPFRDAEIEKELNE********
*********GFTMPMTPA**********SLCMVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELS***************************EIEKEL*ELRQRA***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASxxxxxxxxxxxxxxxxxxxxxAQLALQKGEEDLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKVSEMLGNVNTSSALSAxxxxxxxxxxxxxxxxxxxxxTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query330 2.2.26 [Sep-21-2011]
Q03943323 Membrane-associated 30 kD N/A no 0.942 0.962 0.736 1e-131
Q8S0J7317 Probable membrane-associa yes no 0.936 0.974 0.724 1e-125
O80796330 Membrane-associated prote yes no 0.981 0.981 0.687 1e-120
Q55707267 Uncharacterized protein s N/A no 0.763 0.943 0.456 4e-49
Q9RUB7223 Phage shock protein A hom yes no 0.669 0.991 0.340 2e-25
P0AFM8222 Phage shock protein A OS= yes no 0.645 0.959 0.313 3e-19
P0AFM6222 Phage shock protein A OS= N/A no 0.645 0.959 0.313 3e-19
P0AFM7222 Phage shock protein A OS= N/A no 0.645 0.959 0.313 3e-19
P54617227 Phage shock protein A hom yes no 0.621 0.903 0.316 3e-12
O32201225 Protein LiaH OS=Bacillus no no 0.5 0.733 0.290 2e-09
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1 Back     alignment and function desciption
 Score =  469 bits (1207), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/342 (73%), Positives = 283/342 (82%), Gaps = 31/342 (9%)

Query: 1   MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVTR---------LRI 51
           M  K QI +G  +P  P   SSS        ++KKPL T+ F    TR         +RI
Sbjct: 1   MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFG---TRPVDTLKFRVMRI 47

Query: 52  APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLV 111
           A   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL 
Sbjct: 48  AKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLT 101

Query: 112 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 171
           KMRQATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA
Sbjct: 102 KMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNA 161

Query: 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 231
           ++LKAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT
Sbjct: 162 SSLKAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 221

Query: 232 SSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK 291
           SSALSAFEKMEEKV+TMESQA++L QLTTDDLEGKFA+LETSSVDDDLANLKKEL+GSSK
Sbjct: 222 SSALSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLANLKKELAGSSK 281

Query: 292 KGELPPGRAAASSTNTAF---PFRDAEIEKELNELRQRAKDF 330
           KGELPPGR++ +ST +     PFRDA+IE EL +LR+R+K+ 
Sbjct: 282 KGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKRSKEL 323

Pisum sativum (taxid: 3888)
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1 Back     alignment and function description
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis thaliana GN=VIPP1 PE=1 SV=1 Back     alignment and function description
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0617 PE=3 SV=1 Back     alignment and function description
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1 SV=1 Back     alignment and function description
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2 Back     alignment and function description
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168) GN=ydjF PE=1 SV=3 Back     alignment and function description
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
363806682322 uncharacterized protein LOC100818209 [Gl 0.951 0.975 0.795 1e-141
363807044323 uncharacterized protein LOC100781742 [Gl 0.969 0.990 0.798 1e-141
224138834339 predicted protein [Populus trichocarpa] 0.993 0.967 0.744 1e-139
359478255314 PREDICTED: membrane-associated 30 kDa pr 0.948 0.996 0.756 1e-137
449468854332 PREDICTED: membrane-associated 30 kDa pr 0.987 0.981 0.770 1e-137
225430912324 PREDICTED: probable membrane-associated 0.966 0.984 0.764 1e-136
388510656326 unknown [Lotus japonicus] 0.969 0.981 0.779 1e-134
729842323 RecName: Full=Membrane-associated 30 kDa 0.942 0.962 0.736 1e-130
357473093319 Membrane-associated 30 kDa protein [Medi 0.939 0.971 0.758 1e-130
195622012316 membrane-associated 30 kDa protein [Zea 0.933 0.974 0.724 1e-123
>gi|363806682|ref|NP_001242008.1| uncharacterized protein LOC100818209 [Glycine max] gi|255639265|gb|ACU19931.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/338 (79%), Positives = 290/338 (85%), Gaps = 24/338 (7%)

Query: 1   MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVTR--------LRIA 52
           MAAK QI TG    + PAP  SSSS+   LC++KKPLTTSFF  G  R        +RIA
Sbjct: 1   MAAKLQIFTG----LPPAPFQSSSST---LCVLKKPLTTSFF--GTARVEVLKLRVMRIA 51

Query: 53  PSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 112
             +R      GGGAL  RMNLFDR ARVVKSYANA+LSSFEDPEKILEQAVLEMNDDL K
Sbjct: 52  KPAR------GGGALGARMNLFDRFARVVKSYANAVLSSFEDPEKILEQAVLEMNDDLTK 105

Query: 113 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 172
           MRQATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAR ALKRRKSYADNA+
Sbjct: 106 MRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLARGALKRRKSYADNAS 165

Query: 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 232
           +LKAQLDQQK VV NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS
Sbjct: 166 SLKAQLDQQKTVVENLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 225

Query: 233 SALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKK 292
           SALSAFEKMEEKVLTMESQA++L QLT+DDLEGKFALLE SSVDDDLANLKKELSG+SKK
Sbjct: 226 SALSAFEKMEEKVLTMESQAEALGQLTSDDLEGKFALLEGSSVDDDLANLKKELSGASKK 285

Query: 293 GELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 330
           G+LPPGR + +S NT  PFRDAEIE EL++LRQRAK+F
Sbjct: 286 GDLPPGR-STTSANTGIPFRDAEIELELDQLRQRAKEF 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363807044|ref|NP_001242581.1| uncharacterized protein LOC100781742 [Glycine max] gi|255641682|gb|ACU21113.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224138834|ref|XP_002322913.1| predicted protein [Populus trichocarpa] gi|222867543|gb|EEF04674.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478255|ref|XP_002273068.2| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468854|ref|XP_004152136.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] gi|449484741|ref|XP_004156967.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225430912|ref|XP_002276816.1| PREDICTED: probable membrane-associated 30 kDa protein, chloroplastic [Vitis vinifera] gi|297735245|emb|CBI17607.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388510656|gb|AFK43394.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|729842|sp|Q03943.1|IM30_PEA RecName: Full=Membrane-associated 30 kDa protein, chloroplastic; Short=M30; Flags: Precursor gi|169107|gb|AAA53545.1| IM30 [Pisum sativum] Back     alignment and taxonomy information
>gi|357473093|ref|XP_003606831.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|355507886|gb|AES89028.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|388508128|gb|AFK42130.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|195622012|gb|ACG32836.1| membrane-associated 30 kDa protein [Zea mays] gi|219884263|gb|ACL52506.1| unknown [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
TAIR|locus:2206290330 PTAC4 "plastid transcriptional 0.981 0.981 0.630 3e-101
TIGR_CMR|CPS_3772221 CPS_3772 "phage shock protein 0.633 0.945 0.341 8.2e-28
TIGR_CMR|SO_1807227 SO_1807 "phage shock protein A 0.633 0.920 0.328 3.5e-27
UNIPROTKB|Q9KRG4222 VC1678 "Phage shock protein A" 0.633 0.941 0.345 5.2e-26
TIGR_CMR|VC_1678222 VC_1678 "phage shock protein A 0.633 0.941 0.345 5.2e-26
TIGR_CMR|CPS_4751220 CPS_4751 "phage shock protein 0.636 0.954 0.303 6.6e-26
UNIPROTKB|Q9F4H4221 pspA "Phage shock protein A" [ 0.630 0.941 0.308 1.8e-25
UNIPROTKB|P0AFM6222 pspA [Escherichia coli K-12 (t 0.636 0.945 0.308 2.2e-25
UNIPROTKB|Q81KD9221 BAS4700 "Uncharacterized prote 0.636 0.950 0.276 4.3e-22
TIGR_CMR|BA_5061221 BA_5061 "conserved hypothetica 0.636 0.950 0.276 4.3e-22
TAIR|locus:2206290 PTAC4 "plastid transcriptionally active 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 212/336 (63%), Positives = 255/336 (75%)

Query:     1 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFF--NGGVTR---LRIAPS 54
             MA K+  VTG   P+ P             C ++  PL TSFF  + G  R   LR+A  
Sbjct:     1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60

Query:    55 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 114
             +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct:    61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115

Query:   115 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 174
             QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct:   116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175

Query:   175 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 234
             K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS A
Sbjct:   176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGA 235

Query:   235 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANXXXXXXXXXXXXX 294
             LSAFEKMEEKV+ MES+AD+L Q+ TD+LEGKF +LETSSVDDDLA+             
Sbjct:   236 LSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLADLKKELSGSSKKGE 295

Query:   295 XPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 330
              PPGR+  +++ T +PF+D+EIE ELNELR++A DF
Sbjct:   296 LPPGRSTVAAS-TRYPFKDSEIENELNELRRKANDF 330
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=ISS
GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP
GO:0016050 "vesicle organization" evidence=IMP
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0009508 "plastid chromosome" evidence=IDA
TIGR_CMR|CPS_3772 CPS_3772 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1807 SO_1807 "phage shock protein A" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRG4 VC1678 "Phage shock protein A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1678 VC_1678 "phage shock protein A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4751 CPS_4751 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9F4H4 pspA "Phage shock protein A" [Yersinia enterocolitica (taxid:630)] Back     alignment and assigned GO terms
UNIPROTKB|P0AFM6 pspA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q81KD9 BAS4700 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5061 BA_5061 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q03943IM30_PEANo assigned EC number0.73680.94240.9628N/Ano
O80796VIPP1_ARATHNo assigned EC number0.68750.98180.9818yesno
Q8S0J7IM30_ORYSJNo assigned EC number0.72410.93630.9747yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
COG1842225 COG1842, PspA, Phage shock protein A (IM30), suppr 2e-50
TIGR02977219 TIGR02977, phageshock_pspA, phage shock protein A 8e-44
pfam04012220 pfam04012, PspA_IM30, PspA/IM30 family 1e-43
PRK10698222 PRK10698, PRK10698, phage shock protein PspA; Prov 3e-27
TIGR00998334 TIGR00998, 8a0101, efflux pump membrane protein (m 0.003
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information 
 Score =  166 bits (423), Expect = 2e-50
 Identities = 102/223 (45%), Positives = 142/223 (63%), Gaps = 4/223 (1%)

Query: 71  MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 130
           M +F RL  +VK+  N +L   EDPEK+LEQA+ +M  +L K RQA AQ +A QK+LE K
Sbjct: 1   MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERK 60

Query: 131 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190
            + A+  +E    KA+LALQ G EDLAREAL+ ++S  D A AL+A+L Q +  V  L  
Sbjct: 61  LEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKK 120

Query: 191 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250
               LE KI E R+KK+ LKAR  +AK   KV+  LG  ++SSA++AFE+MEEK+   E+
Sbjct: 121 QLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREA 180

Query: 251 QADS---LNQLTTDDLEGKFA-LLETSSVDDDLANLKKELSGS 289
           +A++   L + + DDL+ +FA     S+VD  LA LK  + G 
Sbjct: 181 RAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARMKGP 223

Length = 225
>gnl|CDD|213755 TIGR02977, phageshock_pspA, phage shock protein A Back     alignment and domain information
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family Back     alignment and domain information
>gnl|CDD|182657 PRK10698, PRK10698, phage shock protein PspA; Provisional Back     alignment and domain information
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 330
PRK10698222 phage shock protein PspA; Provisional 100.0
TIGR02977219 phageshock_pspA phage shock protein A. Members of 100.0
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 100.0
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 100.0
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 98.61
KOG1656221 consensus Protein involved in glucose derepression 98.43
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 98.19
PTZ00464211 SNF-7-like protein; Provisional 98.16
KOG2911439 consensus Uncharacterized conserved protein [Funct 97.99
TIGR02977219 phageshock_pspA phage shock protein A. Members of 97.92
PRK10698222 phage shock protein PspA; Provisional 97.56
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 97.53
KOG3230224 consensus Vacuolar assembly/sorting protein DID4 [ 97.49
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 97.45
KOG2910209 consensus Uncharacterized conserved protein predic 97.03
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.86
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.57
PRK04863 1486 mukB cell division protein MukB; Provisional 96.55
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.38
PRK02224 880 chromosome segregation protein; Provisional 96.17
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.06
PRK02224 880 chromosome segregation protein; Provisional 96.06
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.9
PRK09039343 hypothetical protein; Validated 95.89
KOG0963 629 consensus Transcription factor/CCAAT displacement 95.87
PRK09039343 hypothetical protein; Validated 95.85
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.78
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.73
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.56
PRK04863 1486 mukB cell division protein MukB; Provisional 95.26
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 95.23
KOG3231208 consensus Predicted assembly/vacuolar sorting prot 95.17
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.92
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.91
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.67
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.47
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.38
PRK11637 428 AmiB activator; Provisional 94.36
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.26
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.16
PRK11637 428 AmiB activator; Provisional 94.13
PHA02562 562 46 endonuclease subunit; Provisional 94.06
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 94.05
PRK04778569 septation ring formation regulator EzrA; Provision 93.86
COG4372 499 Uncharacterized protein conserved in bacteria with 93.79
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 93.61
KOG3229227 consensus Vacuolar sorting protein VPS24 [Intracel 93.5
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 93.4
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 93.17
KOG3232203 consensus Vacuolar assembly/sorting protein DID2 [ 93.17
PTZ00464211 SNF-7-like protein; Provisional 93.16
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 92.61
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 92.42
KOG1655218 consensus Protein involved in vacuolar protein sor 92.22
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 91.79
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 91.78
PRK04778569 septation ring formation regulator EzrA; Provision 91.56
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 91.55
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 91.25
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 91.02
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 90.81
KOG0971 1243 consensus Microtubule-associated protein dynactin 90.49
PRK03918 880 chromosome segregation protein; Provisional 90.44
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 90.08
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 90.03
PHA02562 562 46 endonuclease subunit; Provisional 89.87
KOG2911439 consensus Uncharacterized conserved protein [Funct 89.81
TIGR02231 525 conserved hypothetical protein. This family consis 89.72
KOG0996 1293 consensus Structural maintenance of chromosome pro 89.61
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 89.32
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 89.04
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 89.03
PRK10884206 SH3 domain-containing protein; Provisional 88.97
PF13514 1111 AAA_27: AAA domain 88.9
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 88.76
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 88.6
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 88.58
PF00038312 Filament: Intermediate filament protein; InterPro: 88.51
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 88.4
PF10481 307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 87.88
KOG0979 1072 consensus Structural maintenance of chromosome pro 87.86
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 87.74
PF13166 712 AAA_13: AAA domain 87.73
PRK12704 520 phosphodiesterase; Provisional 87.47
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.42
PF1004699 BLOC1_2: Biogenesis of lysosome-related organelles 86.72
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 86.57
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 86.16
TIGR03007 498 pepcterm_ChnLen polysaccharide chain length determ 85.92
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 85.87
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 85.66
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 85.55
TIGR02473141 flagell_FliJ flagellar export protein FliJ. Member 85.5
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 85.13
PRK03918880 chromosome segregation protein; Provisional 85.1
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 84.95
KOG0249 916 consensus LAR-interacting protein and related prot 84.58
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 84.57
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 84.38
smart0068559 DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma 83.94
PF13851201 GAS: Growth-arrest specific micro-tubule binding 83.92
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 83.83
PRK05689147 fliJ flagellar biosynthesis chaperone; Validated 83.66
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 83.66
KOG0933 1174 consensus Structural maintenance of chromosome pro 83.62
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 83.53
PRK07720146 fliJ flagellar biosynthesis chaperone; Validated 83.49
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 82.2
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 82.13
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 82.06
PRK09343121 prefoldin subunit beta; Provisional 81.67
PRK1542279 septal ring assembly protein ZapB; Provisional 81.53
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 80.95
COG4372 499 Uncharacterized protein conserved in bacteria with 80.72
PRK0084677 hypothetical protein; Provisional 80.64
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 80.45
COG3883265 Uncharacterized protein conserved in bacteria [Fun 80.19
PF03194254 LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa 80.06
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.5e-47  Score=351.05  Aligned_cols=219  Identities=31%  Similarity=0.498  Sum_probs=213.3

Q ss_pred             CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141           71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ  150 (330)
Q Consensus        71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~  150 (330)
                      ||||+||+++|+|++|+++|++|||++||+|+|+||++.+.+++.+++++++.++++++++.++...+.+|+.+|..||.
T Consensus         1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~   80 (222)
T PRK10698          1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR   80 (222)
T ss_pred             CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020141          151 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN  230 (330)
Q Consensus       151 ~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~  230 (330)
                      +|+|||||+||.+|..+..++..|+.+++.+...+++|+.++..|+.+|.+++.++.+|++|+++|+++.++++.+++++
T Consensus        81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~  160 (222)
T PRK10698         81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK  160 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhccC-CHHHHHHHHHHHcCCC
Q 020141          231 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETS-SVDDDLANLKKELSGS  289 (330)
Q Consensus       231 ~~sa~~~feRmEeki~~~EA~aeA~~eL~~~~Ld~k~~~le~~-~vd~eLa~LKa~l~~~  289 (330)
                      +++++..|+|||+||+++|++++|+....+++|+.+|+.|+.+ .||++|++||++|+..
T Consensus       161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~~~  220 (222)
T PRK10698        161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMKQD  220 (222)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence            9999999999999999999999999776667899999999865 6999999999998653

>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>TIGR02473 flagell_FliJ flagellar export protein FliJ Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PRK00846 hypothetical protein; Provisional Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 56/353 (15%), Positives = 107/353 (30%), Gaps = 97/353 (27%)

Query: 30  LCMVKKPLTTSFFNGG--------VTRLR---IAPSSRSHCYRQGGGALNTRMNLFDRLA 78
           L   ++ +   F            ++ ++     PS  +  Y      +  R    DRL 
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQR----DRLY 120

Query: 79  RVVKSYANAILSSFEDPEKILEQAVLEMNDD----LVKMRQATAQVLASQ--KRLENKCK 132
              + +A   +S  + P   L QA+LE+       +  +  +    +A       + +CK
Sbjct: 121 NDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 133 AAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 192
              +    W       L     +     L+           L  Q+D      ++  SN 
Sbjct: 180 MDFKIF--W-------LNLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHSSNI 223

Query: 193 RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL--TMES 250
           +L   +I   +++   L    +  +    V   L NV  + A +AF  +  K+L  T   
Sbjct: 224 KL---RIHSIQAELRRLLKS-KPYENCLLV---LLNVQNAKAWNAFN-LSCKILLTTRFK 275

Query: 251 Q-ADSLNQ--------------LTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGEL 295
           Q  D L+               LT D+++            D    L +E+  ++     
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTN----- 326

Query: 296 PP------GRAAASSTNTAFPFRDAEIEK------------ELNELRQRAKDF 330
            P        +      T   ++    +K            E  E R+     
Sbjct: 327 -PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query330
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 97.07
3frt_A218 Charged multivesicular BODY protein 3; ESCRT, ESCR 97.02
4abm_A79 Charged multivesicular BODY protein 4B; cell cycle 96.99
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.26
2gd5_A179 Charged multivesicular BODY protein 3; CHMP3, ESCR 95.92
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 95.91
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.34
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.45
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.21
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.55
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.44
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.38
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.69
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 89.54
3bas_A89 Myosin heavy chain, striated muscle/general contro 89.03
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 88.82
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 88.38
3ajw_A150 Flagellar FLIJ protein; flagellum, type III secret 88.37
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 88.34
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 85.38
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 85.25
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 83.69
4fm3_A98 Uncharacterized hypothetical protein; PF14346 fami 83.69
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 83.58
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 82.92
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 82.23
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 81.84
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 81.77
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 80.41
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 80.29
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
Probab=97.07  E-value=0.039  Score=54.24  Aligned_cols=121  Identities=16%  Similarity=0.146  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020141           73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG  152 (330)
Q Consensus        73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G  152 (330)
                      -+..+.+++...+..++..-.+|+..|+....++++.|.+.+... +..--...+++++.++++...+.+.+|-.|-.  
T Consensus       349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  425 (471)
T 3mq9_A          349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANH--  425 (471)
T ss_dssp             THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch--
Confidence            456788888888999998888999999999999999998876654 67777888999999999999999998877632  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141          153 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL  209 (330)
Q Consensus       153 ~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L  209 (330)
                            ....-..+++..+.       +....+..++..+.++.++|++.+.+...+
T Consensus       426 ------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          426 ------TVMALMASLDAEKA-------QGQKKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             ------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  12222223333333       233345555555555555555555544443
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Back     alignment and structure
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00