Citrus Sinensis ID: 020213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLFA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHcHHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHcccHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHccccHHHccHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHcHHHHHHHHHcccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHEccHHHHHHHHHHHHHHHccccHHHHHHccHHHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
meistsqngnSVIWFLkdrgfndrtIHDMFKRCKRLQGVEKDRAADNWAYLKSIGIlerklpnvvskcpkiltlglnekLVPMVECLatlgtkpyevasaitrfppilshsveEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVkhpfimgysvdnrlrptseflksvglkeldlqVVAVKFPevlcrdvnkilspnftflkrcgfadGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRqidevadypdfFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLFA
Flexible Loop (DISEMBL)
meistsqngnsVIWFLKDRGFNDRTIHDMFKRCkrlqgvekdraadnWAYLKSigilerklpnvVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLFA
Low Complexity Region (SEG)
MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFrhglkkrlelrhrllkqrNIYCSLSEMLDCNAKKFLIKFGLFA
Disordered region (IsUnstruct)
**********SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLF*
Disordered Region (DISOPRED)
*******NGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLFA
Disordered Region (DISEMBL)
********GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLFA
Disordered Region (DISPRO)
*EISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLFA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIKFGLFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.559	0.454	0.252	0.0001

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 18/202 (8%)

Query: 107 ILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAR 166
           +L+   E+ +  +L F + +G+ + QLG  +  NP ++   +E+ L   V +L S     
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFG- 224

Query: 167 EGMIGKVLVKHPFIMGYSV---DNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNK 223
              I +++ + P+++ +SV   DNRL     F   +GL     + + ++FP +L      
Sbjct: 225 NAEITQMVSRAPYLLLFSVERLDNRL---GFFKNELGLSVKKTKDLVIRFPRLLTGK--- 278

Query: 224 ILSPNFTFLKRC----GFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEV 279
            L P    L+ C    GF   ++  +    P IL  S K  L     +L  +MG   + +
Sbjct: 279 -LEPVKENLQVCQVEFGFERNEVQQIAFKTPKILTAS-KKRLRQTFDYLHNIMGIPHNML 336

Query: 280 ADYPDFFRHGLKKRLELRHRLL 301
             +P  F   L  R++ RH  L
Sbjct: 337 TRFPQVFNSKL-LRIKERHMFL 357

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
224132470	331	predicted protein [Populus trichocarpa]	0.984	0.978	0.778	1e-151
224102761	316	predicted protein [Populus trichocarpa]	0.960	1.0	0.784	1e-148
225428362	331	PREDICTED: uncharacterized protein LOC10	0.990	0.984	0.770	1e-147
297744449	354	unnamed protein product [Vitis vinifera]	0.990	0.920	0.770	1e-147
255546666	331	conserved hypothetical protein [Ricinus	0.987	0.981	0.744	1e-146
388514893	328	unknown [Lotus japonicus]	0.960	0.963	0.740	1e-139
449453646	328	PREDICTED: uncharacterized protein LOC10	0.996	1.0	0.692	1e-138
147854552	362	hypothetical protein VITISV_020582 [Viti	0.927	0.842	0.767	1e-137
358248076	335	uncharacterized protein LOC100816929 [Gl	0.996	0.979	0.701	1e-137
356548262	335	PREDICTED: uncharacterized protein LOC10	0.996	0.979	0.695	1e-136

>gi|224132470|ref|XP_002328286.1| predicted protein [Populus trichocarpa] gi|222837801|gb|EEE76166.1| predicted protein [Populus trichocarpa]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 253/325 (77%), Positives = 291/325 (89%), Gaps = 1/325 (0%)

Query: 5   TSQNGNS-VIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPN 63
           T+QNGNS ++WF +DRGF+D TIH+MF++CKRLQ  ++DRA++NWAYLK+IGI ERKLP+
Sbjct: 3   TAQNGNSSLLWFFRDRGFDDNTIHEMFRKCKRLQDTQRDRASENWAYLKTIGIQERKLPS 62

Query: 64  VVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFF 123
           ++SKCPKILTLGLNEKL+PMVECLATLG+KP EVASAIT+FP ILSHSVEEKLCPLLAFF
Sbjct: 63  IISKCPKILTLGLNEKLIPMVECLATLGSKPREVASAITKFPHILSHSVEEKLCPLLAFF 122

Query: 124 QALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGY 183
           QA+GVPEKQLGR++LLNPRL+SYSI+SKL E VDFL SLGL ++GMIGKVLVKHPFI GY
Sbjct: 123 QAIGVPEKQLGRILLLNPRLVSYSIDSKLKEIVDFLASLGLTKDGMIGKVLVKHPFITGY 182

Query: 184 SVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIA 243
           SV+ RLRPTSEFLKSVGL ELDL+ V + FPEVLCRDVNKIL PNF +L+RCGF D QIA
Sbjct: 183 SVEKRLRPTSEFLKSVGLTELDLRTVVMNFPEVLCRDVNKILKPNFAYLRRCGFNDRQIA 242

Query: 244 ALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQ 303
           ALV  YPPILIKS+KNSLEPRIKFLVEVMGRQIDEV DYP FF+HGLKK LE RH+LLKQ
Sbjct: 243 ALVTGYPPILIKSVKNSLEPRIKFLVEVMGRQIDEVVDYPSFFQHGLKKTLESRHKLLKQ 302

Query: 304 RNIYCSLSEMLDCNAKKFLIKFGLF 328
           R + CSLS+ML CN KKFL+K+ L 
Sbjct: 303 RKLDCSLSDMLGCNQKKFLMKYALL 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102761|ref|XP_002312791.1| predicted protein [Populus trichocarpa] gi|222849199|gb|EEE86746.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/316 (78%), Positives = 285/316 (90%)

Query: 10  NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCP 69
           +S++WF +DRGF+D  +H+MF++CK LQG + DRA+ NWAYLK+IGI ERKLP+++SKCP
Sbjct: 1   SSILWFFRDRGFDDNAVHEMFRKCKCLQGTQGDRASGNWAYLKTIGIQERKLPSIISKCP 60

Query: 70  KILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVP 129
           K+LTLGLNEKL+PMVECLATLG+KP E+ASAITRFP ILSHSVEEKLCPLLAFFQALGVP
Sbjct: 61  KVLTLGLNEKLIPMVECLATLGSKPREIASAITRFPHILSHSVEEKLCPLLAFFQALGVP 120

Query: 130 EKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRL 189
           EKQLG+++LLNPRLISYSI+SKLT+ VDFL +LGL ++GMIGKVLVKHPFIMGYSVD RL
Sbjct: 121 EKQLGKILLLNPRLISYSIDSKLTQIVDFLAALGLTKDGMIGKVLVKHPFIMGYSVDKRL 180

Query: 190 RPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAY 249
           RPTSEFLKSVGL ELDLQ V + FPEVLCRDVNKIL PNF +L+RCGF D QIAALV  Y
Sbjct: 181 RPTSEFLKSVGLTELDLQTVVMNFPEVLCRDVNKILKPNFAYLRRCGFNDRQIAALVTGY 240

Query: 250 PPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCS 309
           PPILIKSI+NSLEPRIKFLVEVMGRQIDEV DYP+FF+HGLKK LE RH+LLKQR + CS
Sbjct: 241 PPILIKSIRNSLEPRIKFLVEVMGRQIDEVVDYPNFFQHGLKKTLESRHKLLKQRKLDCS 300

Query: 310 LSEMLDCNAKKFLIKF 325
           LSEML CN KKFL+K+
Sbjct: 301 LSEMLGCNQKKFLMKY 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428362|ref|XP_002280082.1| PREDICTED: uncharacterized protein LOC100252027 [Vitis vinifera]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%)

Query: 1   MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERK 60
           MEIS+SQNG S++WF +D+GF+D++IH+MFK+CKRL+GV +DRA++NWAYL++IGI +RK
Sbjct: 1   MEISSSQNG-SIMWFFRDKGFDDKSIHEMFKKCKRLEGVHRDRASENWAYLRTIGIQDRK 59

Query: 61  LPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLL 120
           +P++V+KCPKIL LGLNEK+VPMV+CLATLGTKP EVASAI +FP ILSHSVEEKLCPLL
Sbjct: 60  IPSIVTKCPKILALGLNEKIVPMVQCLATLGTKPSEVASAIAKFPHILSHSVEEKLCPLL 119

Query: 121 AFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFI 180
           AFFQALGVPEKQLG++IL+NPRLISYSIESKLT+ VDFL SLG  REGMIGKVL K+PFI
Sbjct: 120 AFFQALGVPEKQLGKVILVNPRLISYSIESKLTQIVDFLASLGFTREGMIGKVLQKYPFI 179

Query: 181 MGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADG 240
           MGYSVD RLRPTSEFLK +GL E DLQ VA+ FPEV CRD NKILSPN  +LKR GF DG
Sbjct: 180 MGYSVDKRLRPTSEFLKLIGLTEQDLQKVAMNFPEVFCRDANKILSPNVAYLKRRGFEDG 239

Query: 241 QIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRL 300
           QIAALV+ YPPILIKSIKNSLEPRI+FLVEVM R I+EV +YPDFFR GLKK LELR +L
Sbjct: 240 QIAALVSGYPPILIKSIKNSLEPRIRFLVEVMKRDINEVVNYPDFFRCGLKKTLELRQKL 299

Query: 301 LKQRNIYCSLSEMLDCNAKKFLIKFGL 327
           L+QR I CSLSEMLDCN KKFL+KF L
Sbjct: 300 LEQRKIECSLSEMLDCNQKKFLLKFNL 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744449|emb|CBI37711.3| unnamed protein product [Vitis vinifera]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/327 (77%), Positives = 291/327 (88%), Gaps = 1/327 (0%)

Query: 1   MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERK 60
           MEIS+SQNG S++WF +D+GF+D++IH+MFK+CKRL+GV +DRA++NWAYL++IGI +RK
Sbjct: 24  MEISSSQNG-SIMWFFRDKGFDDKSIHEMFKKCKRLEGVHRDRASENWAYLRTIGIQDRK 82

Query: 61  LPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLL 120
           +P++V+KCPKIL LGLNEK+VPMV+CLATLGTKP EVASAI +FP ILSHSVEEKLCPLL
Sbjct: 83  IPSIVTKCPKILALGLNEKIVPMVQCLATLGTKPSEVASAIAKFPHILSHSVEEKLCPLL 142

Query: 121 AFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFI 180
           AFFQALGVPEKQLG++IL+NPRLISYSIESKLT+ VDFL SLG  REGMIGKVL K+PFI
Sbjct: 143 AFFQALGVPEKQLGKVILVNPRLISYSIESKLTQIVDFLASLGFTREGMIGKVLQKYPFI 202

Query: 181 MGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADG 240
           MGYSVD RLRPTSEFLK +GL E DLQ VA+ FPEV CRD NKILSPN  +LKR GF DG
Sbjct: 203 MGYSVDKRLRPTSEFLKLIGLTEQDLQKVAMNFPEVFCRDANKILSPNVAYLKRRGFEDG 262

Query: 241 QIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRL 300
           QIAALV+ YPPILIKSIKNSLEPRI+FLVEVM R I+EV +YPDFFR GLKK LELR +L
Sbjct: 263 QIAALVSGYPPILIKSIKNSLEPRIRFLVEVMKRDINEVVNYPDFFRCGLKKTLELRQKL 322

Query: 301 LKQRNIYCSLSEMLDCNAKKFLIKFGL 327
           L+QR I CSLSEMLDCN KKFL+KF L
Sbjct: 323 LEQRKIECSLSEMLDCNQKKFLLKFNL 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546666|ref|XP_002514392.1| conserved hypothetical protein [Ricinus communis] gi|223546489|gb|EEF47988.1| conserved hypothetical protein [Ricinus communis]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/325 (74%), Positives = 287/325 (88%)

Query: 4   STSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPN 63
           ST  NG+S+ WF +D+GF+D++IH+MF++CKRL+G++++RA++NW+YLKS+GI ERKLP 
Sbjct: 3   STCSNGSSLTWFFRDKGFDDKSIHEMFRKCKRLEGLQRERASENWSYLKSVGIQERKLPC 62

Query: 64  VVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFF 123
           V+SKCPKILTLGLNEKL+PMVECL+TL T+P++VASAIT+FP ILSHS+EEKLCPLLAF 
Sbjct: 63  VISKCPKILTLGLNEKLIPMVECLSTLATRPHDVASAITKFPHILSHSLEEKLCPLLAFL 122

Query: 124 QALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGY 183
           QALG+ EKQLG++ILLNPRLISYSIESKLTE V FL  LGL+ +GMIGKVLVKHPFIMGY
Sbjct: 123 QALGISEKQLGKIILLNPRLISYSIESKLTEIVQFLAGLGLSGDGMIGKVLVKHPFIMGY 182

Query: 184 SVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIA 243
           SVD RLRPTSEFLKSVGL EL+LQ V + FPEVLCRDVNKIL PN  +LKRCGF D QIA
Sbjct: 183 SVDKRLRPTSEFLKSVGLTELNLQTVVMNFPEVLCRDVNKILQPNLAYLKRCGFQDRQIA 242

Query: 244 ALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQ 303
            +V  YPPILIKSI+NSLEPRIKFLV++MGR IDE A YP+FF+H LKK LE RHRLLKQ
Sbjct: 243 VMVTGYPPILIKSIRNSLEPRIKFLVDIMGRTIDEAAAYPNFFQHSLKKTLESRHRLLKQ 302

Query: 304 RNIYCSLSEMLDCNAKKFLIKFGLF 328
           + + CSL+EMLDCN KKFL+KFGL 
Sbjct: 303 KKVDCSLNEMLDCNEKKFLLKFGLL 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514893|gb|AFK45508.1| unknown [Lotus japonicus]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/316 (74%), Positives = 274/316 (86%)

Query: 12  VIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKI 71
           ++WF KDRGF+D +I  MF++CKRL+ V +++A +NW YL+SIGI ERKLP+ VSKCPKI
Sbjct: 13  MMWFFKDRGFDDNSIQGMFRKCKRLEVVHQEKANENWEYLRSIGIQERKLPSTVSKCPKI 72

Query: 72  LTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEK 131
           L LGLNEK+VPMVECL TLGTKP+EVASAI +FP ILSHSVEEKLCPLLAFFQALGVPEK
Sbjct: 73  LALGLNEKIVPMVECLKTLGTKPHEVASAIAKFPHILSHSVEEKLCPLLAFFQALGVPEK 132

Query: 132 QLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRP 191
           Q+G+MILLNPRLISYSIE+K+ E VDFL  LGL ++GMIGKVLVK P+IMGYSV+ RL P
Sbjct: 133 QIGKMILLNPRLISYSIETKMAEIVDFLAGLGLNKDGMIGKVLVKDPYIMGYSVEKRLGP 192

Query: 192 TSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPP 251
           TS+FLKS+GL E DLQVVA+ FP +L RDVNK+L PN  +LK+CGF D QI  LV  +PP
Sbjct: 193 TSQFLKSIGLAEKDLQVVAMNFPSILSRDVNKLLVPNHAYLKKCGFQDRQIVDLVVGFPP 252

Query: 252 ILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLS 311
           ILIKSI+NSLEPRIKFLV+VMGRQ+DEV DYP FFRHGLKK+L+LRH+ LKQRN+ CSLS
Sbjct: 253 ILIKSIQNSLEPRIKFLVDVMGRQVDEVVDYPCFFRHGLKKKLQLRHKFLKQRNLSCSLS 312

Query: 312 EMLDCNAKKFLIKFGL 327
           EMLDCN KKF +KFGL
Sbjct: 313 EMLDCNEKKFQMKFGL 328

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453646|ref|XP_004144567.1| PREDICTED: uncharacterized protein LOC101218706 [Cucumis sativus] gi|449500128|ref|XP_004161012.1| PREDICTED: uncharacterized protein LOC101225990 [Cucumis sativus]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 227/328 (69%), Positives = 288/328 (87%)

Query: 1   MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERK 60
           ME S S+NGN ++WF +D+GF+DR+I  MF++C+RL+ ++ +RA++NW YL+ IGI +RK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 61  LPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLL 120
           LP+VVSKCPKIL LGL EKLVPMVECLATL TKP+E+A+AI +FP ILS+SVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFI 180
           AFFQALGVPEKQLG+MILLNPRLISYSIESKL ETVDFL  +GL +EG+IGKVL K+PF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 MGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADG 240
           MGYSVD RLRPT EFLKS+GL ++DLQ VA+KFP++LCRDV+K+L  N  +L+  GF DG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 241 QIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRL 300
           +I +LV  YPP+LIKSI++SLEPRI+FLVE+MGR+++EVA+YPDFF+HGLKK+LELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKQRNIYCSLSEMLDCNAKKFLIKFGLF 328
           LK++N+  +LSE+L+CN KKF++K GL 
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854552|emb|CAN78574.1| hypothetical protein VITISV_020582 [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/306 (76%), Positives = 273/306 (89%), Gaps = 1/306 (0%)

Query: 1   MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERK 60
           MEIS+SQNG S++WF +D+GF+D++IH+MFK+CKRL+GV +DRA++NWAYL++IGI +RK
Sbjct: 1   MEISSSQNG-SIMWFFRDKGFDDKSIHEMFKKCKRLEGVHRDRASENWAYLRTIGIQDRK 59

Query: 61  LPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLL 120
           +P++V+KCPKIL LGLNEK+VPMV+CLATLGTKP EVASAI +FP ILSHSVEEKLCPLL
Sbjct: 60  IPSIVTKCPKILALGLNEKIVPMVQCLATLGTKPSEVASAIAKFPHILSHSVEEKLCPLL 119

Query: 121 AFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFI 180
           AFFQALGVPEKQLG++IL+NPRLISYSIESKLT+ VDFL SLG  REGMIGKVL K+PFI
Sbjct: 120 AFFQALGVPEKQLGKVILVNPRLISYSIESKLTQIVDFLASLGFTREGMIGKVLQKYPFI 179

Query: 181 MGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADG 240
           MGYSVD RLRPTSEFLK +GL E DLQ VA+ FPEV CRD NKILSPN  +LKR GF DG
Sbjct: 180 MGYSVDKRLRPTSEFLKLIGLTEQDLQKVAMNFPEVFCRDANKILSPNVAYLKRRGFEDG 239

Query: 241 QIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRL 300
           QIAALV+ YPPILIKSIKNSLEPRI+FLVEVM R I+EV +YPDFFR GLKK LELR +L
Sbjct: 240 QIAALVSGYPPILIKSIKNSLEPRIRFLVEVMKRDINEVVNYPDFFRCGLKKTLELRQKL 299

Query: 301 LKQRNI 306
           L+QR I
Sbjct: 300 LEQRKI 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248076|ref|NP_001239807.1| uncharacterized protein LOC100816929 [Glycine max] gi|255638191|gb|ACU19409.1| unknown [Glycine max]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 230/328 (70%), Positives = 281/328 (85%)

Query: 1   MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERK 60
           MEI++S N  S++WF KD+GF+D +   MF++C+RL+GV ++RA++NW YL+SIGI ERK
Sbjct: 1   MEITSSHNSGSMMWFFKDKGFDDNSAQGMFRKCRRLEGVHQERASENWDYLRSIGIEERK 60

Query: 61  LPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLL 120
           LP++VSKCPKIL L L EK+VP VECL TLGTKP EVASAI +FP ILS+SVEEKLCPLL
Sbjct: 61  LPSIVSKCPKILALDLYEKIVPTVECLRTLGTKPNEVASAIAKFPHILSNSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFI 180
           AFFQ LG+PEKQ+G+MILLNPRL+SYSI +KLTE V+FL +LGL ++GMIGKV+V+ P+I
Sbjct: 121 AFFQTLGIPEKQIGKMILLNPRLVSYSIATKLTEIVNFLANLGLNKDGMIGKVIVRDPYI 180

Query: 181 MGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADG 240
           MGYSVD RLRPTSEFLKS+GL E DLQ VAV FP +L RDVNK+L PN+ +LK+ GF D 
Sbjct: 181 MGYSVDKRLRPTSEFLKSIGLSEADLQAVAVNFPAILSRDVNKLLVPNYAYLKKRGFEDR 240

Query: 241 QIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRL 300
           QI ALV  +PPILIKSI+NSLEPRIKFLV+VMGRQ+DEV DYP FFRHGLK+R+E R++L
Sbjct: 241 QIVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKRRIEPRYKL 300

Query: 301 LKQRNIYCSLSEMLDCNAKKFLIKFGLF 328
           LK+R++ CSLSEMLDCN KKF +KFGL 
Sbjct: 301 LKERSLNCSLSEMLDCNRKKFFMKFGLL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548262|ref|XP_003542522.1| PREDICTED: uncharacterized protein LOC100793256 [Glycine max]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/328 (69%), Positives = 283/328 (86%)

Query: 1   MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERK 60
           MEI++S +  S++WF KD+GF+D ++  MF++C+RL+GV ++RA++NW YL+SIGI ERK
Sbjct: 1   MEITSSHSSGSMMWFFKDKGFDDNSVQGMFRKCRRLEGVHQERASENWDYLRSIGIEERK 60

Query: 61  LPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLL 120
           LP++VSKCPKIL L L  K+VP VECL TLGTKP EVASAI +FP ILS+SVEEKLCPLL
Sbjct: 61  LPSIVSKCPKILALDLYGKIVPTVECLRTLGTKPNEVASAIAKFPHILSNSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFI 180
           AFFQ LG+PEKQ+G+MILLNPRLISYSIE+KLTE V+FL +LGL+++GMIGKV+V+ P+I
Sbjct: 121 AFFQTLGIPEKQIGKMILLNPRLISYSIETKLTEIVNFLVNLGLSKDGMIGKVIVRDPYI 180

Query: 181 MGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADG 240
           MGYSVD RLRPTS+FLKS+GL E DLQ VAV FP +L RDVNK+L PN+ +LK+ GF + 
Sbjct: 181 MGYSVDKRLRPTSDFLKSIGLSEADLQAVAVNFPGILSRDVNKLLVPNYAYLKKRGFEER 240

Query: 241 QIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRL 300
           QI ALV  +PPILIKSI+NSLEPRIKFLV+VMGRQ+DEV DYP FFRHGLK+R+E R++L
Sbjct: 241 QIVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKRRIEPRYKL 300

Query: 301 LKQRNIYCSLSEMLDCNAKKFLIKFGLF 328
           LK+R++ CSLSEMLDCN KKF +KFGL 
Sbjct: 301 LKERSLNCSLSEMLDCNRKKFFMKFGLL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.702	0.468	0.291	1.1e-25
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.832	0.463	0.273	4.7e-24
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.942	0.483	0.230	3.3e-23
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.954	0.580	0.233	3.3e-22
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.811	0.526	0.247	5.6e-21
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.768	0.510	0.247	8.7e-21
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.693	0.832	0.302	5.3e-17
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.686	0.452	0.28	2.8e-15
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.620	0.673	0.25	9.3e-15
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.659	0.766	0.25	2.2e-13

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 69/237 (29%), Positives = 123/237 (51%)

Query:    50 YLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILS 109
             YL  +G+   ++  +  K        L+ K+ P+VE L  LG    ++ + + + P I  
Sbjct:   202 YLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCKRPQICG 261

Query:   110 HSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGM 169
              S+ + L P +AF + LG+ + Q  ++I   P +++YS   KLT TV+FL+  GL  E  
Sbjct:   262 ISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYS-RQKLTSTVEFLSQTGLTEE-Q 319

Query:   170 IGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNF 229
             IG++L + P IM YSV+++LRPT E+ +S+ +   D+ V+  + P+     +   L P  
Sbjct:   320 IGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV---DVAVLLHRCPQTFGLSIESNLKPVT 376

Query:   230 TFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFF 286
              F    GF   +I  +++ Y  +   S+K ++ P+  +  + M     E+  +P FF
Sbjct:   377 EFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFF 432

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 76/278 (27%), Positives = 134/278 (48%)

Query:    51 LKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSH 110
             ++ + ++ +    ++ K P IL+  + E    +     +      ++  AI R+P +L  
Sbjct:   307 MEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGC 366

Query:   111 SVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMI 170
             S    +  ++  F  LGV +K++G++I   P+L+    +  L + V FL  LG  +E ++
Sbjct:   367 SASN-MEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEFL-KVVCFLEDLGFQKE-IV 423

Query:   171 GKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFT 230
             G++L + P I G S++  L+    FL   G+       +  K+PE L  D +K + P   
Sbjct:   424 GQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLK 483

Query:   231 FLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFXXXX 290
             +L   G ++ +IA ++  + PIL  SI   L P+ +FLV  M + + EV +YP +F    
Sbjct:   484 YLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSL 543

Query:   291 XXXXXXXXXXXXXXNIYCSLSEMLDCNAKKFLIKF-GL 327
                           NI C+L EML  N ++F   F GL
Sbjct:   544 EKRIKPRFRVLKGRNIECTLQEMLGKNDEEFAADFLGL 581

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 72/313 (23%), Positives = 138/313 (44%)

Query:    10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCP 69
             N ++ +L+  G     +  +  RC  L     +       +   +G+ +     +V   P
Sbjct:   282 NEIVEYLESNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYP 341

Query:    70 KILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVP 129
             KI+     + +   +  L   G    EV   +   P ++  S+EE+  PL+ +F  LG+P
Sbjct:   342 KIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIP 401

Query:   130 EKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRL 189
             ++ + R++++ P L    +E  +   V FL  +G+  E  IG +LVK P ++  S+  ++
Sbjct:   402 KEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEA-IGNMLVKFPSLLTNSLYKKI 460

Query:   190 RPTSEFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAA 248
             RP   FL +  G+ + D+  V    P +L   +   L PN  +    G    Q+  ++A 
Sbjct:   461 RPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIAD 520

Query:   249 YPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFXXXXXXXXXXXXXXXXXXNIYC 308
             +P +L  ++ N L P+ ++L   M R + ++ ++P FF                   +  
Sbjct:   521 FPMLLRYNVDN-LRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNF 579

Query:   309 SLSEMLDCNAKKF 321
              L  ML C  ++F
Sbjct:   580 KLRYMLACTDEEF 592

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 75/321 (23%), Positives = 143/321 (44%)

Query:     4 STSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRL--QGVEKDRAADNWAYLKSIGILERKL 61
             S  +N   V+ +L   G    T  +  +R  ++    V  D  A    YL+ + I    +
Sbjct:   174 SVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVID-LAPVVKYLQGLDIKPSDV 232

Query:    62 PNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLA 121
             P V+ + P++L   L   +   V  L  +G    E+   +TR+P IL   V   + PL+ 
Sbjct:   233 PRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVE 292

Query:   122 FFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIM 181
             + + LG+P     R+I   P ++ + ++  +   V  L    + RE  +  ++ ++P I+
Sbjct:   293 YLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNV-RETSLPSIIAQYPEII 351

Query:   182 GYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADG 240
             G  +  +L    + L S + L   DL  +  + P+ +    + +L  +  FL +CGF+  
Sbjct:   352 GIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLK-HIDFLTKCGFSID 410

Query:   241 QIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFXXXXXXXXXXXXXX 300
             Q   +V   P +L  ++   ++   ++  + M R + ++ D+P FF              
Sbjct:   411 QTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKK 469

Query:   301 XXXXNIYCSLSEMLDCNAKKF 321
                  I CSL+ ML+C+ +KF
Sbjct:   470 IIKKGIKCSLAWMLNCSDEKF 490

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 68/275 (24%), Positives = 135/275 (49%)

Query:    50 YLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILS 109
             +L+ + + ++ L  V+ K P++L   L   +   V  L ++G  P ++   +T++P +L 
Sbjct:   186 FLRGLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLG 245

Query:   110 HSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGM 169
               V   + PL+ +  ++G+P+K + RM+     ++ Y++E  +   VD L S G+ +E +
Sbjct:   246 MRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKE-L 304

Query:   170 IGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQV---VAVKFPEVLCRDVNKILS 226
             +  ++ ++P I+G  V  ++  T ++  S+ LK +D +    V  K P+++    N I+ 
Sbjct:   305 LPLLIAQYPQILGLPVKAKMS-TQQYFFSLKLK-IDPEGFARVVEKMPQIVSLKQNVIMK 362

Query:   227 PNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFF 286
             P   FL    F    IA +V   P IL   ++  ++    F    MGR + E+ +YP++F
Sbjct:   363 P-IEFLLGRAFQVEDIAKMVVRCPQILCSRVE-LMKNSYYFYKTEMGRPMKELVEYPEYF 420

Query:   287 XXXXXXXXXXXXXXXXXXNIYCSLSEMLDCNAKKF 321
                                I  SL+  L+C+ ++F
Sbjct:   421 TYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRF 455

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 8.7e-21, P = 8.7e-21
 Identities = 64/259 (24%), Positives = 124/259 (47%)

Query:    15 FLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTL 74
             +L   G  +     M++R      +    A +   YL S+G+  R +  ++ + P+IL  
Sbjct:   190 YLSTFGLKESHFVQMYERHMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQY 249

Query:    75 GLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFF-QALGVPEKQL 133
              +   L   +  L  LG    ++   +   P + S+SVE  L P + +  + +G+ E  +
Sbjct:   250 TVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDV 309

Query:   134 GRMILLNPRLISYSIESKLTETVDFLTS-LGLAREGMIGKVLVKHPFIMGYSVDNRLRPT 192
             G+++ L+P+++   ++        FL+  LG  R+ ++ K++ KHP ++ YS+D+   P 
Sbjct:   310 GKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVV-KMVKKHPQLLHYSIDDGFLPR 368

Query:   193 SEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPI 252
               FL+S+G+   D+  V     +VL   +   L P + +L      + ++  L   YP  
Sbjct:   369 INFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYL--VNELNNEVHILTK-YPMY 425

Query:   253 LIKSIKNSLEPRIKFLVEV 271
             L  S+   + PR +FLVE+
Sbjct:   426 LSLSLDQRIRPRHRFLVEL 444

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 73/241 (30%), Positives = 113/241 (46%)

Query:    87 LATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISY 146
             L++LG  P     A    PP    SV      LL   ++ G+ ++   R++ L P+L S 
Sbjct:    43 LSSLGIVPQNPRLA----PPANDLSVILSAVNLL---KSKGISDEDFPRLVFLCPQLFSP 95

Query:   147 SIE-SKLTETVDFLTS-LGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKEL 204
             + + SKL    DFLT  LG + E   G ++V  P I+   V+  LRPT  +LK +G++ L
Sbjct:    96 TFDISKLDPVFDFLTGELGASAEESRG-LIVNCPNILFSDVEYCLRPTLVYLKELGVRNL 154

Query:   205 DLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPR 264
             +    +     VL   V K L     FLK  GF   + A +    P I   S++++L P+
Sbjct:   155 NR--ASKTNAHVLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEDNLRPK 211

Query:   265 IKFLVEVMGRQIDEVADYPDFFXXXXXXXXXXXXXXXXXXNIYCSLSEMLDCNAKKFLIK 324
              +FLV  M R+++E+  +P +F                  N+  SLS ML    +KF  K
Sbjct:   212 FEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSK 271

Query:   325 F 325
             +
Sbjct:   272 W 272

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 70/250 (28%), Positives = 126/250 (50%)

Query:    50 YLKSIGILERKL----P----NVVSKCPKILTLGLNEKLVPMVECLATL-GTKPYEVASA 100
             Y KS+  +ER +    P     ++++ P IL   L+ +L+P V+ +  L G   +   + 
Sbjct:   212 YQKSVEDIERLISFLEPFGGIGIIARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTV 271

Query:   101 ITRFPPILSHSVEEKLCPLLAFFQAL-GVPEKQLGRMILLNPRLISYSIESKLTETVDFL 159
             + R P ILS+SVE  +   + F ++  G+  +Q+ +++ + P +IS S E KL   ++FL
Sbjct:   272 LRRLPAILSYSVEH-MNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFL 330

Query:   160 TSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLK----ELDLQVVAVKFPE 215
                G    GM  K L K P I+  S +N L     FL  +G K    EL   + AV    
Sbjct:   331 KECGFDSPGMF-KFLSKAPLILALS-ENNLSHKLGFLVKIGYKHRTKELAFAMGAVT--R 386

Query:   216 VLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQ 275
                 ++ +++    ++    G +   I A+   +P +L  +   SLE ++++L+E MGR+
Sbjct:   387 TSSDNMQRVIGLYLSY----GLSFEDILAMSTKHPQVLQYNY-TSLEEKLEYLIEYMGRE 441

Query:   276 IDEVADYPDF 285
             ++E+  +P F
Sbjct:   442 VEELLAFPAF 451

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 9.3e-15, P = 9.3e-15
 Identities = 54/216 (25%), Positives = 116/216 (53%)

Query:    72 LTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEK 131
             +TL + EK++    CL  +G    +   A++  P + S  ++  +  +L F Q+ G+   
Sbjct:    51 VTLQMKEKIL----CLELMGI---DSGKALSLNPCLCSAPLDS-IQSVLHFLQSKGIYPN 102

Query:   132 QLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRP 191
              L R++ + P++++  + ++L     FL++     E    +V+ K P ++  SV+++L+P
Sbjct:   103 DLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKP 162

Query:   192 TSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPP 251
                +L+ +GLK  DL+ +A + P +L   V   L P   FL+  GF+  +   ++   P 
Sbjct:   163 ALFYLQRLGLK--DLEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPA 220

Query:   252 ILIKSIKNSLEPRIK-FLVEVMGRQIDEVADYPDFF 286
             +   SI+N+ +P++  F+ E+ G+ ++ + ++P +F
Sbjct:   221 LFTFSIENNFKPKLDYFMSEIKGK-LENLKEFPQYF 255

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 55/220 (25%), Positives = 101/220 (45%)

Query:   103 RFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSL 162
             R  P L  +    +  +     + G+    +GR++ + P L++   ES++   + FL++ 
Sbjct:    51 RVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNE 110

Query:   163 GLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVN 222
                 E  I K + + P ++  SVD +LRP   FLK++G    D   +  +   +L  +V 
Sbjct:   111 ISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD--TITSRNTVLLVSNVE 168

Query:   223 KILSPNFTFLKR-CGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVAD 281
             + L P   +L+   GF   ++A +V   P +L  S+ N+L P+++F +E M   + E+  
Sbjct:   169 RTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKR 228

Query:   282 YPDFFXXXXXXXXXXXXXXXXXXNIYCSLSEMLDCNAKKF 321
             +P +F                   I   LSEML  +  +F
Sbjct:   229 FPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_66000222 hypothetical protein (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	6e-41
pfam02536	345	pfam02536, mTERF, mTERF	1e-30
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-21
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	5e-16
pfam02536	345	pfam02536, mTERF, mTERF	1e-13
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-07
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	1e-04

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  148 bits (376), Expect = 6e-41
 Identities = 79/311 (25%), Positives = 153/311 (49%), Gaps = 44/311 (14%)

Query: 50  YLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILS 109
           YL+ +G+    LP ++ + P++L   +   L P+V+ L  L  K  ++   + R+P +L 
Sbjct: 130 YLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLG 189

Query: 110 HSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGM 169
             +E  +   +A+  ++GV  + +G M+   P ++   + + +   VD+L SLGL R   
Sbjct: 190 FKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRL-A 248

Query: 170 IGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNK------ 223
           + ++L K P+I+G+ ++  ++P  E L   G+++  L  V  ++P++L  D+        
Sbjct: 249 VARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQ 308

Query: 224 -----------------------ILSPNFT-------FLKRCGFADGQIAALVAAYPPIL 253
                                  I+S N         FL+  GF+   +A +V   P IL
Sbjct: 309 YWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQIL 368

Query: 254 ---IKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSL 310
              ++ +K SLE    F  + M R + E+ ++P +F +GL+ R++ R+  + ++ I CSL
Sbjct: 369 ALNLEIMKPSLE----FFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSL 424

Query: 311 SEMLDCNAKKF 321
           +  L+C+  KF
Sbjct: 425 AWFLNCSDDKF 435

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  118 bits (297), Expect = 1e-30
 Identities = 82/315 (26%), Positives = 143/315 (45%), Gaps = 16/315 (5%)

Query: 15  FLKDRGFNDRTIHDMFKRCKRLQGVEKDRA-ADNWAYLKSIGILERKLPNVVSKCPKILT 73
           FL+ RG +   +  +     ++ G +  ++ +  + +LK I + +    + + K P+ L 
Sbjct: 39  FLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLP 98

Query: 74  LGLNEKLVPMVECLATLGTKP-YEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQ 132
            G N   +  V  L  LG  P    +  I+R  P+    V E     L     +G     
Sbjct: 99  QGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCGKEVFE---ESLKKVVEMGFDPTT 155

Query: 133 LGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPT 192
             R+I   PRL+ YS +  +   V+FL SLG + E  +  +L K P ++G S   +L+  
Sbjct: 156 FKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVED-VWAILKKCPELLGSSEKKKLQTQ 214

Query: 193 SEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPI 252
                   L   +   V  K P+ +     KIL+     L   GF+  +IA +V   P +
Sbjct: 215 EILKTCGLL---EFLSVIKKMPQFVSYSEQKILNKIEFLLG-LGFSREEIAKMVKRCPQL 270

Query: 253 LIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELR---HRLLKQRN--IY 307
           L  S++  ++ + +FLV+ M   + E+ ++P  F + L+KR++ R    + L  +   I 
Sbjct: 271 LGLSVEK-VKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSIL 329

Query: 308 CSLSEMLDCNAKKFL 322
            SLS ML C  ++FL
Sbjct: 330 PSLSSMLKCTDEEFL 344

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 55/205 (26%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 69  PKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGV 128
           P +L   + + ++P+++ L  LG     +   + R+P +L  SV   L P++ + Q L V
Sbjct: 113 PLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDV 172

Query: 129 PEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNR 188
             + + R++   P L+ + +E  ++ +V +L S+G+A    IG +L + P I+G  V N 
Sbjct: 173 KRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRD-IGPMLTRFPEILGMRVGNN 231

Query: 189 LRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAA 248
           ++P  ++L+S+GL  L +  +  K P +L  D+ + + PN   L   G     + +++A 
Sbjct: 232 IKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQ 291

Query: 249 YPPILIKSIKNSLEPRIKFLVEVMG 273
           YP IL   +K  L  +  +L   + 
Sbjct: 292 YPDILGLDLKAKLAEQQYWLTSKLK 316

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 51/205 (24%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 101 ITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT 160
           I  +P +L  SV++ + P+L + + LGV    L  ++   P+++  S+   L   V +L 
Sbjct: 109 INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQ 168

Query: 161 SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRD 220
            L + R+  I +VL ++P ++G+ ++  +  +  +L S+G+   D+  +  +FPE+L   
Sbjct: 169 GLDVKRQ-DIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMR 227

Query: 221 VNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDE-- 278
           V   + P   +L+  G     +A ++   P IL   ++ +++P ++ L+E  G + +   
Sbjct: 228 VGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEF-GVRKEALP 286

Query: 279 --VADYPDFFRHGLKKRLELRHRLL 301
             +A YPD     LK +L  +   L
Sbjct: 287 SVIAQYPDILGLDLKAKLAEQQYWL 311

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 44/233 (18%), Positives = 84/233 (36%), Gaps = 35/233 (15%)

Query: 87  LATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISY 146
           L +LG     +++ I  +P +L    E+ L P L F Q+ G  + +L +++   P+++  
Sbjct: 4   LRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGK 63

Query: 147 SIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLK---- 202
                ++   DFL  + +A        L K+P  +    +         L+ +G+     
Sbjct: 64  KGVKSISSVYDFLKKIIVADLD-KSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLL 122

Query: 203 ------------------------------ELDLQVVAVKFPEVLCRDVNKILSPNFTFL 232
                                             + V  K P +L    +K + PN  FL
Sbjct: 123 FSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL 182

Query: 233 KRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDF 285
           K  GF+   + A++   P +L  S K  L+ +       +   +  +   P F
Sbjct: 183 KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQF 235

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 42  DRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECL-ATLGTKPYEVASA 100
           +    N   L   G+ +  LP+V+++ P IL L L  KL      L + L   P +    
Sbjct: 266 ETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRV 325

Query: 101 ITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT 160
           I + P I+S +        + F +  G   + + +M++  P++++ ++E  +  +++F  
Sbjct: 326 IEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEI-MKPSLEFFK 383

Query: 161 SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLK 202
              + R     K LV+ P    Y +++R++P  E +   G+K
Sbjct: 384 K-EMKRP---LKELVEFPAYFTYGLESRIKPRYERVAKKGIK 421

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 194 EFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPIL 253
           EFL  +GL   D+     ++P VL   V K + P   +L++ G     +  L+  YP +L
Sbjct: 97  EFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVL 152

Query: 254 IKSIKNSLEPRIKFL 268
             S+   L P +K+L
Sbjct: 153 HASVVVDLAPVVKYL 167

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.86
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.07
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.96
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	95.39
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	89.52
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	84.39
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	82.5
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	82.24

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=7.7e-60  Score=450.67  Aligned_cols=318  Identities=23%  Similarity=0.501  Sum_probs=297.8

Q ss_pred             CCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcch-hhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHH
Q 020213            7 QNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKD-RAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVE   85 (329)
Q Consensus         7 ~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~-~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~   85 (329)
                      .|...+++||.++|++.+++.+++.++|.+|..+++ ++.++++||+++|++++++.+++.++|++|.+++++++.++++
T Consensus       122 ~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~  201 (487)
T PLN03196        122 KNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVA  201 (487)
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHH
Confidence            466779999999999999999999999999988876 7999999999999999999999999999999999888999999


Q ss_pred             HHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCC
Q 020213           86 CLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLA  165 (329)
Q Consensus        86 ~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~  165 (329)
                      ||+++|++.+++++++.++|.+|+++++++++|+++||.++|++.+++++++.++|+++++++++++++++++|.++|++
T Consensus       202 fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~  281 (487)
T PLN03196        202 YLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVR  281 (487)
T ss_pred             HHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999887899999999999997


Q ss_pred             chhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCChhhHHHHHhhcCceeeeccccccchhHHHHHHhCCChhHHHH
Q 020213          166 REGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAA  244 (329)
Q Consensus       166 ~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~G~s~~~v~~  244 (329)
                      + +++..++.++|.+++++.++.+.++++++.. +|++++++..++.++|.+++.|.++ +++|++||.++|++.+++..
T Consensus       282 ~-~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~k-l~~kvefL~~~Gls~edI~~  359 (487)
T PLN03196        282 K-EALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNV-ALKHVEFLRGRGFSAQDVAK  359 (487)
T ss_pred             H-HHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHH-HHHHHHHHHHcCCCHHHHHH
Confidence            5 5899999999999999888889999999976 9999999999999999999998765 99999999999999999999


Q ss_pred             HHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHcCCCCChhhhhcccHHHHHHh
Q 020213          245 LVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLIK  324 (329)
Q Consensus       245 l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~gl~~~l~~~l~~s~~~F~~~  324 (329)
                      |+.++|++|++|. ++|++|++||+++||++.++|+++|.+|+||+|+||+|||++|+++|+++++.+++++||++|+++
T Consensus       360 mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F~~r  438 (487)
T PLN03196        360 MVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQR  438 (487)
T ss_pred             HHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHHHHH
Confidence            9999999999994 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcc
Q 020213          325 FGL  327 (329)
Q Consensus       325 ~~~  327 (329)
                      |+.
T Consensus       439 ~v~  441 (487)
T PLN03196        439 MSG  441 (487)
T ss_pred             Hhh
Confidence            974

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=6.8e-53  Score=392.13  Aligned_cols=306  Identities=34%  Similarity=0.653  Sum_probs=259.0

Q ss_pred             HHHHhCCCChhHHHHHHHhhhcccCCcch-hhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCC
Q 020213           14 WFLKDRGFNDRTIHDMFKRCKRLQGVEKD-RAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGT   92 (329)
Q Consensus        14 ~~L~~~G~s~~~i~~i~~~~p~ll~~~~~-~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~   92 (329)
                      ++|+++||++++|.++++++|.++..+++ .+.++++||.+.|++..++.+++.++|++|..+.++++.|.++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            68999999999999999999999888766 79999999999999999999999999999999988999999999999999


Q ss_pred             ChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchhhHHH
Q 020213           93 KPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGK  172 (329)
Q Consensus        93 ~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~~i~~  172 (329)
                      +++++.+++.++|.+++.+.++++.+++++|+++|++++.+.+++...|.++...  +++.+.++++.++|+++ +++.+
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~-~~~~~  158 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDP-EKIGR  158 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSH-HHHCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCc-hhhcc
Confidence            9999999999999999988877899999999999999988889999999876665  57999999999999985 69999


Q ss_pred             HHHhcCcccccccccchhHHHHHHHHhCCChhhHHHHHhhcCceeeecccc-----------------------------
Q 020213          173 VLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNK-----------------------------  223 (329)
Q Consensus       173 ll~~~p~ll~~~~~~~l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~-----------------------------  223 (329)
                      ++..+|.++....++.+++++++|+++|++.+++.+++.++|.++..+.++                             
T Consensus       159 vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~  238 (345)
T PF02536_consen  159 VIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSL  238 (345)
T ss_dssp             CHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------TH
T ss_pred             cccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccccccccccccccc
Confidence            999999877777678999999999999999999999999999999998875                             


Q ss_pred             ---ccchhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHH---
Q 020213          224 ---ILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELR---  297 (329)
Q Consensus       224 ---~l~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R---  297 (329)
                         .+.++++||+++|++.+++.+|+.++|++|++|. +++++|++||.++||++.++|+++|.+|+||+|+||+||   
T Consensus       239 ~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~-e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~  317 (345)
T PF02536_consen  239 SEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSI-EKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEV  317 (345)
T ss_dssp             HHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-H-HHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcch-hhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHH
Confidence               4788999999999999999999999999999995 679999999999999999999999999999999999999   


Q ss_pred             HHHHHHcC--CCCChhhhhcccHHHHHH
Q 020213          298 HRLLKQRN--IYCSLSEMLDCNAKKFLI  323 (329)
Q Consensus       298 ~~~l~~~g--l~~~l~~~l~~s~~~F~~  323 (329)
                      +++|+++|  .++++.+++++||++|++
T Consensus       318 ~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  318 LKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence            56777899  689999999999999975

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.3e-47  Score=366.52  Aligned_cols=304  Identities=20%  Similarity=0.426  Sum_probs=282.4

Q ss_pred             CcchHHHHHHhCCCChhHHHHHHHhhhcccCCcch-hhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHH
Q 020213            8 NGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKD-RAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVEC   86 (329)
Q Consensus         8 ~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~-~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~   86 (329)
                      +-...++||+++|++.++|.    ++|.++..+++ ++.++++||.++|+++.++.+++.++|.+|..++++++.|+++|
T Consensus        91 ~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~f  166 (487)
T PLN03196         91 VMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKY  166 (487)
T ss_pred             HHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHH
Confidence            34567899999999999996    69999999875 79999999999999999999999999999999999999999999


Q ss_pred             HHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCc
Q 020213           87 LATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAR  166 (329)
Q Consensus        87 L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~  166 (329)
                      |+++|++++++.+++.++|.+|++++++++.++++||.++|++++++++++.++|.++.+++++++.++++||.++|++ 
T Consensus       167 L~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~-  245 (487)
T PLN03196        167 LQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLP-  245 (487)
T ss_pred             HHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             hhhHHHHHHhcCcccccccccchhHHHHHHHHhCCChhhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHH
Q 020213          167 EGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAAL  245 (329)
Q Consensus       167 ~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l  245 (329)
                      .+++++++.++|++|+++++++++++++++.++|++++++..++.++|.+++.+.++.+.++++||. ++|++.+++..+
T Consensus       246 ~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~  325 (487)
T PLN03196        246 RLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRV  325 (487)
T ss_pred             HHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHH
Confidence            4699999999999999999889999999999999999999999999999999998888999999997 999999999999


Q ss_pred             HHhCchhhcccccchhhhHHHHHHHHhCCChhhh----hcCCceeecCcchhhHHHHHHHH-HcCCC----CChhhhhcc
Q 020213          246 VAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEV----ADYPDFFRHGLKKRLELRHRLLK-QRNIY----CSLSEMLDC  316 (329)
Q Consensus       246 ~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i----~~~P~~l~~sl~~~i~~R~~~l~-~~gl~----~~l~~~l~~  316 (329)
                      +.++|++++.| ++++++|++||.+ +|++.++|    .++|.+|++|. ++++++++||. ++|..    .....++.+
T Consensus       326 v~k~P~il~lS-e~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~Lsy  402 (487)
T PLN03196        326 IEKLPQIVSLN-RNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTY  402 (487)
T ss_pred             HHhcchhhccc-HHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHHhChHHhcc
Confidence            99999999999 7899999999996 99999997    68999999998 58999999998 46752    233445666


Q ss_pred             cHH
Q 020213          317 NAK  319 (329)
Q Consensus       317 s~~  319 (329)
                      |-|
T Consensus       403 SLE  405 (487)
T PLN03196        403 GLE  405 (487)
T ss_pred             Chh
Confidence            643

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.7e-38  Score=291.91  Aligned_cols=257  Identities=31%  Similarity=0.584  Sum_probs=217.5

Q ss_pred             cCCcchHHHHHHhCCCChhHHHHHHHhhhcccCCc-chhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHH
Q 020213            6 SQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVE-KDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMV   84 (329)
Q Consensus         6 ~~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~-~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l   84 (329)
                      ..+....++||.+.|++.+++.+++.++|.++..+ .+++.+.+++|+++|.+++++.+++.++|++|..+.+.++.+.+
T Consensus        30 ~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v  109 (345)
T PF02536_consen   30 EKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNV  109 (345)
T ss_dssp             S-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHH
T ss_pred             ccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhh
Confidence            44556789999999999999999999999999999 67899999999999999999999999999999988777899999


Q ss_pred             HHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCC
Q 020213           85 ECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGL  164 (329)
Q Consensus        85 ~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~  164 (329)
                      ++|+++|++.+.+.+.+...|.++...  +.+++.++++.++|++++++++++..+|.++..+.+++++++++||+++|+
T Consensus       110 ~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~  187 (345)
T PF02536_consen  110 AFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGF  187 (345)
T ss_dssp             HHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT
T ss_pred             hHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcc
Confidence            999999999998889898888866655  479999999999999999999999999987777777899999999999999


Q ss_pred             CchhhHHHHHHhcCccccccccc--------------------------------chhHHHHHHHHhCCChhhHHHHHhh
Q 020213          165 AREGMIGKVLVKHPFIMGYSVDN--------------------------------RLRPTSEFLKSVGLKELDLQVVAVK  212 (329)
Q Consensus       165 ~~~~~i~~ll~~~p~ll~~~~~~--------------------------------~l~~~~~~l~~~g~~~~~i~~~i~~  212 (329)
                      + ++++.+++.++|.++.++.++                                .+.+++++|.++|++.+++.+|+.+
T Consensus       188 ~-~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~  266 (345)
T PF02536_consen  188 S-KEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRR  266 (345)
T ss_dssp             --GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHH
T ss_pred             c-chhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHh
Confidence            8 579999999999999998764                                5889999999999999999999999


Q ss_pred             cCceeeeccccccchhHHHHH-HhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHH
Q 020213          213 FPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVE  270 (329)
Q Consensus       213 ~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~  270 (329)
                      +|.+|+++.++ +++|++||. ++|++.+++.    ++|++|++|+|++|+||++++..
T Consensus       267 ~P~iL~~s~e~-l~~k~~fl~~~m~~~~~~i~----~~P~~l~~sLe~ri~PR~~~~~~  320 (345)
T PF02536_consen  267 FPQILSYSIEK-LKPKFEFLVKEMGLPLEEIV----EFPQYLSYSLEKRIKPRYEVLKV  320 (345)
T ss_dssp             SGGGGGS-HHH-HHHHHHHHHHCCT--HHHHH----HSCHHHCS-HHHHHHHHHHHHHT
T ss_pred             Ccchhhcchhh-hhHHHHHHHHHhCcCHHHHh----hCCceeEechhhhhhhHHHHHHH
Confidence            99999999997 999999998 8999999976    99999999999999999665554

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.97  E-value=2.5e-30  Score=245.22  Aligned_cols=296  Identities=28%  Similarity=0.459  Sum_probs=261.8

Q ss_pred             ccccCCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcch-hhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchH
Q 020213            3 ISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKD-RAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLV   81 (329)
Q Consensus         3 ~~~~~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~-~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~   81 (329)
                      .....||+++.++|+++|++..++.+++..+|.++..+.+ .+.++..+|.+.|++.+.+.+++...|.+|......++.
T Consensus        85 ~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~  164 (413)
T KOG1267|consen   85 SEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLS  164 (413)
T ss_pred             hhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchh
Confidence            3567899999999999999999999999999999888766 577777788999999999999999999999887778999


Q ss_pred             HHHHHHHHCC--CChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHH
Q 020213           82 PMVECLATLG--TKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFL  159 (329)
Q Consensus        82 ~~l~~L~~lG--~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l  159 (329)
                      +.++|+++++  .....+.+.....|.....  +..+. ++++++++|..++++..++..+|.......  .+...+.++
T Consensus       165 ~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i  239 (413)
T KOG1267|consen  165 TFIEFLKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFL  239 (413)
T ss_pred             hHHHHhhccchhhhhhHHHHhcccccccccc--ccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhH
Confidence            9999999985  7777777777666643222  22344 789999999999999999999999877653  688899999


Q ss_pred             hhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHHhCCChhhHHHHHhhcCceeeecccc----------------
Q 020213          160 TSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNK----------------  223 (329)
Q Consensus       160 ~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~----------------  223 (329)
                      .++|++|. .  +++...|.++.++.++++++++++|+++|++.++++.|+.++|.+|+++.++                
T Consensus       240 ~~~g~~p~-~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~~~~~~  316 (413)
T KOG1267|consen  240 LTLGFDPK-T--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKNPKHIL  316 (413)
T ss_pred             HHhccCCc-h--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhcchhhh
Confidence            99999874 3  7788889999988889999999999999999999999999999999999874                


Q ss_pred             -----------ccchhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcch
Q 020213          224 -----------ILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKK  292 (329)
Q Consensus       224 -----------~l~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~  292 (329)
                                 .+.++++|+..+|++..++..+++++|+++.+|+++.++.+.+|+.+.|+++.+.++.+|.++.|++++
T Consensus       317 k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~  396 (413)
T KOG1267|consen  317 KFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEK  396 (413)
T ss_pred             hhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhh
Confidence                       288999999999999999999999999999999755999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHcCC
Q 020213          293 RLELRHRLLKQRNI  306 (329)
Q Consensus       293 ~i~~R~~~l~~~gl  306 (329)
                      |+.||++..+.+|.
T Consensus       397 ri~pr~~~~~~~~~  410 (413)
T KOG1267|consen  397 RIRPRFNVIKKLGV  410 (413)
T ss_pred             cchhHHHHHHHHhc
Confidence            99999999887764

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.86  E-value=1.8e-21  Score=184.72  Aligned_cols=270  Identities=21%  Similarity=0.359  Sum_probs=211.5

Q ss_pred             CCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHH
Q 020213           19 RGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVA   98 (329)
Q Consensus        19 ~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~   98 (329)
                      .|.+...+..+..   .+...+..+....+++|+++|+++.++..++..+|.++..+.++.+.+...+|++.|++..++.
T Consensus        69 ~~~~~~~~~~~~~---~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~  145 (413)
T KOG1267|consen   69 LGLSIKLARKLSR---EVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELS  145 (413)
T ss_pred             cccchhhHHHHHH---HHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccc
Confidence            5555555554443   2234445677888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcccccchhhHhHHHHHHHHCC--CCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchhhHHHHHHh
Q 020213           99 SAITRFPPILSHSVEEKLCPLLAFFQALG--VPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVK  176 (329)
Q Consensus        99 ~~l~~~P~ll~~~~e~~l~~~v~~L~~lG--~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~~i~~ll~~  176 (329)
                      +++...|.+++.+...++.+.++|++.++  .....+.+++...|......  ..+. .++++.++|.. ...+..++.+
T Consensus       146 ~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~--~~v~-~~~~~~~lg~~-~~~L~~~l~~  221 (413)
T KOG1267|consen  146 SIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNE--NSVE-RLDIRRELGVK-PRLLKSLLES  221 (413)
T ss_pred             hhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccc--cccc-cchhhHHhCCC-HHHHHHHHhc
Confidence            99999999988777778999999999985  77777787777777443221  2344 89999999996 5688999999


Q ss_pred             cCcccccccccchhHHHHHHHHhCCChhhHHHHHhhcCceeeeccccccchhHHHHHHhCCChhHHHHHHHhCchhhccc
Q 020213          177 HPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKS  256 (329)
Q Consensus       177 ~p~ll~~~~~~~l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s  256 (329)
                      +|..+....  .+...+.++..+|+++..  .++.+.|.+++++.++.+++|+++|+++||+.+|+++|+.++|++|++|
T Consensus       222 ~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s  297 (413)
T KOG1267|consen  222 QPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYS  297 (413)
T ss_pred             Cccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEee
Confidence            999888652  688889999999988888  7778889999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHcC
Q 020213          257 IKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRN  305 (329)
Q Consensus       257 ~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~g  305 (329)
                       ++++..+++|+.+.    .+++.++|.++.++ +..+.+|++++...|
T Consensus       298 -~~~~~~~~~~~~~~----~~~~~k~p~~l~~s-~~~l~~~ie~l~~~g  340 (413)
T KOG1267|consen  298 -VKKNLKTTEYLLKN----PKHILKFPQLLRSS-EDKLKPRIEFLLSLG  340 (413)
T ss_pred             -hhhhhHHHHHHHhc----chhhhhhhhhhhcc-chhhhhhHHHHHHcC
Confidence             46654444444443    12244444444444 224444444444444

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.07  E-value=0.00036  Score=40.02  Aligned_cols=28  Identities=32%  Similarity=0.660  Sum_probs=18.3

Q ss_pred             HHHhCchhhcccccchhhhHHHHHHHHhCC
Q 020213          245 LVAAYPPILIKSIKNSLEPRIKFLVEVMGR  274 (329)
Q Consensus       245 l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~  274 (329)
                      ++.++|.+++.| +++++++++||. .+|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~-~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLK-ELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHH-HcCC
Confidence            456667777666 566667776666 4664

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.96  E-value=0.00079  Score=38.52  Aligned_cols=27  Identities=44%  Similarity=0.816  Sum_probs=11.2

Q ss_pred             HHhCCCcccccchhhHhHHHHHHHHCCC
Q 020213          101 ITRFPPILSHSVEEKLCPLLAFFQALGV  128 (329)
Q Consensus       101 l~~~P~ll~~~~e~~l~~~v~~L~~lG~  128 (329)
                      +.++|.+++.+ +++++++++||+++|+
T Consensus         4 ~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        4 LKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            33444444444 2334444444444443

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=95.39  E-value=0.037  Score=51.04  Aligned_cols=94  Identities=16%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             HhCCCChhHHHHHHHhhhcccCCcc---h-----hhHHHHHHHHh--CCCCCCChhHHHhhCCCccccccccc-hHHHHH
Q 020213           17 KDRGFNDRTIHDMFKRCKRLQGVEK---D-----RAADNWAYLKS--IGILERKLPNVVSKCPKILTLGLNEK-LVPMVE   85 (329)
Q Consensus        17 ~~~G~s~~~i~~i~~~~p~ll~~~~---~-----~l~~~~~~L~~--~G~~~~~i~~i~~~~P~lL~~~~~~~-l~~~l~   85 (329)
                      ..+|+....+...+.++|.++..-.   .     .+.+...-|..  ..+-.+.-..++.+=-.+|.++.+.. .-.+++
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            3489977888899999998865421   1     23333333321  11111111223333334676666533 356677


Q ss_pred             HHH-HCCCChhhHHHHHHhCCCcccc
Q 020213           86 CLA-TLGTKPYEVASAITRFPPILSH  110 (329)
Q Consensus        86 ~L~-~lG~~~~~~~~~l~~~P~ll~~  110 (329)
                      .++ ++|++.+=...++.+||..+..
T Consensus       125 ~l~~dLGLP~Df~~~lv~~yP~~Frv  150 (335)
T PF11955_consen  125 HLRRDLGLPDDFRDSLVPKYPDYFRV  150 (335)
T ss_pred             HHHHHcCCChhhccchhhhCCCCcEE
Confidence            776 7999988888889999987664

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=89.52  E-value=2  Score=35.76  Aligned_cols=23  Identities=9%  Similarity=0.106  Sum_probs=16.3

Q ss_pred             HHHHHHHHCCCChhhHHHHHHhC
Q 020213           82 PMVECLATLGTKPYEVASAITRF  104 (329)
Q Consensus        82 ~~l~~L~~lG~~~~~~~~~l~~~  104 (329)
                      ..+..++++|++-+++..++...
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~   71 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQP   71 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcC
Confidence            45556678888888888777644

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=84.39  E-value=5.9  Score=32.94  Aligned_cols=115  Identities=15%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             HHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhh----cCCCchhhHHHHHHhcCcccccccccchhHHH
Q 020213          118 PLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTS----LGLAREGMIGKVLVKHPFIMGYSVDNRLRPTS  193 (329)
Q Consensus       118 ~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~----~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~  193 (329)
                      ..+..++++|++-++|..++.....    .....+...+..+.+    +.-. ...+..++...+.. .....-+...-+
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~----~~~~~L~~~~~~l~~ei~~L~~~-~~~l~~ll~~~~~~-~~~~~V~~~~w~  122 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGD----DATDVLRRRLAELNREIQRLRQQ-QRAIATLLKQPTLL-KEQRLVTKEKWV  122 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-cccccCCHHHHH
Confidence            4567788999999999998865542    111223333333321    1100 12334444333222 211111234455


Q ss_pred             HHHHHhCCChhhHHHHHhhcCceeeeccccccchhHHHHHHhCCChhHHHHH
Q 020213          194 EFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAAL  245 (329)
Q Consensus       194 ~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~G~s~~~v~~l  245 (329)
                      +.++..|++++++..+=..+-   ...|    ....+||..+|++.+++..+
T Consensus       123 ~l~~~~g~~~~~m~~wh~~fe---~~~p----~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         123 AILKAAGMDEADMRRWHIEFE---KMEP----EAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHHcCCChHHHHHHHHHHH---HhCc----HHHHHHHHHcCCCHHHHHHH
Confidence            666679999988765432211   1122    33568999999999998644

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=82.50  E-value=3.6  Score=42.31  Aligned_cols=99  Identities=17%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             ccCCcchHHHHHHh---CCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC-CCCCCChhHHHhhCCCccccccccch
Q 020213            5 TSQNGNSVIWFLKD---RGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI-GILERKLPNVVSKCPKILTLGLNEKL   80 (329)
Q Consensus         5 ~~~~~~~v~~~L~~---~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~-G~~~~~i~~i~~~~P~lL~~~~~~~l   80 (329)
                      -+...++++.||.+   .|+-+..+.+|+...+.   ...+.+...-+-|... |++++.+..+...+.   .   ....
T Consensus        73 ~p~~~~~i~~yL~s~~~~GIG~~~A~~iv~~fg~---~~~~~i~~~~~~L~~v~gi~~~~~~~i~~~~~---~---~~~~  143 (720)
T TIGR01448        73 APTSKEGIVAYLSSRSIKGVGKKLAQRIVKTFGE---AAFDVLDDDPEKLLEVPGISKANLEKFVSQWS---Q---QGDE  143 (720)
T ss_pred             CCCCHHHHHHHHhcCCCCCcCHHHHHHHHHHhCH---hHHHHHHhCHHHHhcCCCCCHHHHHHHHHHHH---H---hHHH
Confidence            34567889999987   58999999999987652   1123344445556665 999888888887652   1   2347


Q ss_pred             HHHHHHHHHCCCChhhHHH-----------HHHhCCCcccccc
Q 020213           81 VPMVECLATLGTKPYEVAS-----------AITRFPPILSHSV  112 (329)
Q Consensus        81 ~~~l~~L~~lG~~~~~~~~-----------~l~~~P~ll~~~~  112 (329)
                      ...+.+|..+|++.....+           ++..+|..|..++
T Consensus       144 ~~~~~~L~~~gi~~~~a~ki~~~yg~~~~~~i~~nPY~L~~~i  186 (720)
T TIGR01448       144 RRLLAGLQGLGIGIKLAQRIYKFYQADTLDRVEKDPYLLAEDV  186 (720)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhCchhhhhhc
Confidence            8889999999999876665           4567887666543

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=82.24  E-value=8.8  Score=36.21  Aligned_cols=40  Identities=15%  Similarity=0.300  Sum_probs=32.9

Q ss_pred             chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCC
Q 020213           10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGIL   57 (329)
Q Consensus        10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~   57 (329)
                      ...++-+-++||+++++.+.++..       -.+.+..++||.+ |+.
T Consensus       157 e~~I~~i~eMGf~R~qV~~ALRAa-------fNNPdRAVEYL~t-GIP  196 (378)
T TIGR00601       157 ETTIEEIMEMGYEREEVERALRAA-------FNNPDRAVEYLLT-GIP  196 (378)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHH-------hCCHHHHHHHHHh-CCC
Confidence            457888899999999999988754       3566889999988 887

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	329
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		1e-04
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		2e-04

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 78  EKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMI 137
           +KLV +   L+ +   P E A+ + R         E+ +  +L F + +G+ + QLG  +
Sbjct: 10  QKLVLLGVDLSKIEKHP-EAANLLLRL------DFEKDIKQMLLFLKDVGIEDNQLGAFL 62
Query: 138 LLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSV---DNRLRPTSE 194
             N  + S  +E+ L   V +L S   ++   + +++ K PF++ +SV   DNRL     
Sbjct: 63  TKNHAIFSEDLEN-LKTRVAYLHSKNFSKAD-VAQMVRKAPFLLNFSVERLDNRL---GF 117
Query: 195 FLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILI 254
           F K + L     + + V+ P +L   +  +      +    GF   +I  ++   P +L 
Sbjct: 118 FQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT 177
Query: 255 KSIKNSLEPRIKFLVEVMGRQIDEVADYPDFF 286
            + K  L     F+  VM      +  +P  F
Sbjct: 178 AN-KMKLTETFDFVHNVMSIPHHIIVKFPQVF 208

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 113 EEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGK 172
           E+ +  +L F + +G+ + QLG  +  N  + S  +E+ L   V +L S   ++   + +
Sbjct: 66  EKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKAD-VAQ 123
Query: 173 VLVKHPFIMGYSV---DNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNF 229
           ++ K PF++ +SV   DNRL     F K + L     + + V+ P +L   +  +     
Sbjct: 124 MVRKAPFLLNFSVERLDNRL---GFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMK 180
Query: 230 TFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFF 286
            +    GF   +I  ++   P +L  + K  L     F+  VM      +  +P  F
Sbjct: 181 VYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVF 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	3e-55
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-23
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	5e-04
3mva_O	343	Transcription termination factor, mitochondrial; a	5e-47
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  180 bits (457), Expect = 3e-55
 Identities = 48/253 (18%), Positives = 99/253 (39%), Gaps = 13/253 (5%)

Query: 82  PMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNP 141
             ++ L  LG    ++         +L    E+ +  +L F + +G+ + QLG  +  N 
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 142 RLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGL 201
            + S  +E  L   V +L S   ++   + +++ K PF++ +SV+        F K + L
Sbjct: 67  AIFSEDLE-NLKTRVAYLHSKNFSKA-DVAQMVRKAPFLLNFSVERLDNRLGFFQKELEL 124

Query: 202 KELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSL 261
                + + V+ P +L   +  +      +    GF   +I  ++   P +L  +    L
Sbjct: 125 SVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMK-L 183

Query: 262 EPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLK---------QRNIYCSLSE 312
                F+  VM      +  +P  F   L  +++ RH  L           +  Y SL +
Sbjct: 184 TETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISLDK 242

Query: 313 MLDCNAKKFLIKF 325
           ++    + F  + 
Sbjct: 243 LVSIPDEIFCEEI 255

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 96.4 bits (240), Expect = 2e-23
 Identities = 41/199 (20%), Positives = 82/199 (41%), Gaps = 10/199 (5%)

Query: 11  SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPK 70
            ++ FLKD G  D  +     +   +   + +      AYL S    +  +  +V K P 
Sbjct: 43  QMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPF 102

Query: 71  ILTLGLNEKLVPMVECLA-TLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVP 129
           +L   + E+L   +      L     +    + R P +L+ S+E     +  +   LG  
Sbjct: 103 LLNFSV-ERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFK 161

Query: 130 EKQLGRMILLNPRLISYSIESKLTETVDFLTS-LGLAREGMIGKVLVKHPFIMGYSVDNR 188
             ++  MI   P++++ +   KLTET DF+ + + +        ++VK P +    +  +
Sbjct: 162 HNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHH-----IIVKFPQVFNTRLF-K 214

Query: 189 LRPTSEFLKSVGLKELDLQ 207
           ++    FL  +G  + D  
Sbjct: 215 VKERHLFLTYLGRAQYDPA 233

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 221 VNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVA 280
           V+   S     L   G    +I     A   +L    +  ++  + FL + +G + +++ 
Sbjct: 3   VDH--SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKD-VGIEDNQLG 59

Query: 281 D----YPDFFRHGLKKRLELRHRLLKQRNI 306
                    F   L+  L+ R   L  +N 
Sbjct: 60  AFLTKNHAIFSEDLEN-LKTRVAYLHSKNF 88

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  160 bits (407), Expect = 5e-47
 Identities = 66/336 (19%), Positives = 130/336 (38%), Gaps = 22/336 (6%)

Query: 4   STSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPN 63
           S       ++  L   G +   I    KR   +         D   +L S G  +  + +
Sbjct: 14  SEPLKNEDLLKNLLTMGVD---IDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIAS 70

Query: 64  VVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLC-PLLAF 122
           ++S+ P+ +T    E L    +    + T   E+ + + R P     S         + F
Sbjct: 71  IISRYPRAITRTP-ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKF 129

Query: 123 FQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREG-----MIGKVLVKH 177
             ++G+  K L R++   PR  S S++    + V+FL + GL+         + K++ K+
Sbjct: 130 LYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPADFVRKIIFKN 188

Query: 178 PFIMGYSVDNRLRPTSEFLKSVGLKELD--LQVVAVKFPEVLC---RDVNKILSPNFTFL 232
           PFI+  S   R++   EFL+S      +  L ++     E+L        +  +     L
Sbjct: 189 PFILIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL 247

Query: 233 KRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKK 292
              G  + ++   V +YP ++  + K     +I  L+E     I ++ + P      +  
Sbjct: 248 FSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLME-ENISISQIIENPRVLDSSI-S 304

Query: 293 RLELRHRLLKQR--NIYCSLSEMLDCNAKKFLIKFG 326
            L+ R + L     N+      +L  + K++  K  
Sbjct: 305 TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLK 340

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 183 YSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQI 242
           ++ D+      + LK++    +D+ +   + P V  R +         FL   G +   I
Sbjct: 10  HNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDL-KMFLLSKGASKEVI 68

Query: 243 AALVAAYPPILIKSIKNSLEPRIKFLVEV 271
           A++++ YP  + ++ +N L  R     ++
Sbjct: 69  ASIISRYPRAITRTPEN-LSKRWDLWRKI 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 49/365 (13%), Positives = 105/365 (28%), Gaps = 98/365 (26%)

Query: 12  VIWFLKDRGFN--DRTIHDMFKR-----CKRLQGVEKDRAADNWAYLKSIGILERKLPNV 64
           + W L  +      + + ++ +         ++  ++  +     Y++    L       
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 65  ----VSKCPKILTL--GLNEKLVP--------MVECLATLGTKPYEVASAITRFPPILSH 110
               VS+    L L   L  +L P        ++      G K +            LS+
Sbjct: 127 AKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGS----G-KTWVALDVC------LSY 174

Query: 111 SVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMI 170
            V+ K+     F+  L         + +L    + Y I+   T   D  +++ L      
Sbjct: 175 KVQCKM-DFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIH--- 228

Query: 171 GKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKE----LDLQVVAVKFPEVL------CR- 219
                        S+   LR     LKS   +     L      V+  +        C+ 
Sbjct: 229 -------------SIQAELR---RLLKSKPYENCLLVLL----NVQNAKAWNAFNLSCKI 268

Query: 220 -------DVNKILSPNFTF-----LKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIK- 266
                   V   LS   T               ++ +L+  Y    +      L   +  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLT 324

Query: 267 ---FLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLSEMLDCNAKKFLI 323
                + ++   I +     D ++H    +L     +++      SL+ +     +K   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLT---TIIES-----SLNVLEPAEYRKMFD 376

Query: 324 KFGLF 328
           +  +F
Sbjct: 377 RLSVF 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.95
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.61
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.1
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	94.64
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	94.57
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	92.56
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	91.98
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	91.45
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	90.76
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	90.54
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	90.39
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	90.24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	87.19
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	84.99
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	84.57

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=3e-54  Score=398.69  Aligned_cols=312  Identities=21%  Similarity=0.319  Sum_probs=284.0

Q ss_pred             CCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHH
Q 020213            7 QNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVEC   86 (329)
Q Consensus         7 ~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~   86 (329)
                      ..+++++++|.++|++.++   +++.+|.++..++++.+++++||.++|++++++.+++.++|.+|..+. +++.++++|
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f   92 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL   92 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred             cccHHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence            4578999999999999555   567789999999999999999999999999999999999999999996 589999999


Q ss_pred             HHHCCCChhhHHHHHHhCCC-cccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCC
Q 020213           87 LATLGTKPYEVASAITRFPP-ILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLA  165 (329)
Q Consensus        87 L~~lG~~~~~~~~~l~~~P~-ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~  165 (329)
                      |+++|++++++.+++.++|. +++.+.+++++|+++||+++|++.+++++++.++|++++.+.+. .++++++++++|++
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~  171 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLS  171 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCC
Confidence            99999999999999999999 55555434899999999999999999999999999999999865 59999999977653


Q ss_pred             -----chhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCChhhHHHHHhhcC-ceeeeccccccchhHHHHH----H
Q 020213          166 -----REGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFP-EVLCRDVNKILSPNFTFLK----R  234 (329)
Q Consensus       166 -----~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~~~i~~~i~~~P-~il~~s~~~~l~~k~~~L~----~  234 (329)
                           +.+.+.+++.++|.+++++ +++++++++|+++ +|++++++..++.+.| .++..+.+. +++++.++.    +
T Consensus       172 ~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~-l~~~~~~l~e~~~~  249 (343)
T 3mva_O          172 LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDY-ARRSYANIKEKLFS  249 (343)
T ss_dssp             TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTH-HHHHHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHH-HHHHHHHHHHHHHH
Confidence                 3568999999999999999 5799999999996 9999999999998854 788888764 899997776    6


Q ss_pred             hCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHcCCCCChh--h
Q 020213          235 CGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLS--E  312 (329)
Q Consensus       235 ~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~gl~~~l~--~  312 (329)
                      +|++.+|+.+|+.++|++|++| +++|++|++||.+ ||++.++|+++|.+|+||+| |++|||++|+++|+++++.  .
T Consensus       250 lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~  326 (343)
T 3mva_O          250 LGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNIT  326 (343)
T ss_dssp             TTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGG
T ss_pred             cCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcch
Confidence            9999999999999999999999 5789999999999 99999999999999999999 9999999999999998888  9


Q ss_pred             hhcccHHHHHHhhccC
Q 020213          313 MLDCNAKKFLIKFGLF  328 (329)
Q Consensus       313 ~l~~s~~~F~~~~~~~  328 (329)
                      +|++||++|.++|++.
T Consensus       327 ~l~~s~~~F~~~~~~~  342 (343)
T 3mva_O          327 LLSWSKKRYEAKLKKL  342 (343)
T ss_dssp             GGGSCHHHHHHHHHHT
T ss_pred             hhcCCHHHHHHHHhcc
Confidence            9999999999999875

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=3.1e-45  Score=328.00  Aligned_cols=242  Identities=21%  Similarity=0.389  Sum_probs=222.4

Q ss_pred             HHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHh
Q 020213           81 VPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT  160 (329)
Q Consensus        81 ~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~  160 (329)
                      .+.+++|.++|++.+++.+...-+|.+|+++++++++|+++||+++|++++++++++.++|.++.++++. +.++++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            5889999999999999987777777779999988999999999999999999999999999999999875 999999999


Q ss_pred             hcCCCchhhHHHHHHhcCcccccccccchhHHHHHHH-HhCCChhhHHHHHhhcCceeeeccccccchhHHHH-HHhCCC
Q 020213          161 SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLK-SVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFL-KRCGFA  238 (329)
Q Consensus       161 ~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~-~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L-~~~G~s  238 (329)
                      ++|++ ++++.+++.++|+++.++++ ++++++++|+ ++|++.+++.+++.++|.+++.+.++ ++++++++ .++|++
T Consensus        85 ~~Gls-~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           85 SKNFS-KADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFK  161 (270)
T ss_dssp             HTTCC-HHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCC
T ss_pred             HcCCC-HHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCC
Confidence            99998 46999999999999999986 6999999995 69999999999999999999999886 89999976 599999


Q ss_pred             hhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHc---CC------CCC
Q 020213          239 DGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQR---NI------YCS  309 (329)
Q Consensus       239 ~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~---gl------~~~  309 (329)
                      .+++.+|+.++|++|++| +++|++|++||.++||+++++|+++|.+|+||++ |++|||++++.+   |+      +++
T Consensus       162 ~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~  239 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS  239 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred             HHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence            999999999999999999 5899999999999999999999999999999999 999999998864   44      378


Q ss_pred             hhhhhcccHHHHHHhhccC
Q 020213          310 LSEMLDCNAKKFLIKFGLF  328 (329)
Q Consensus       310 l~~~l~~s~~~F~~~~~~~  328 (329)
                      +.+++.+||++|+++|+..
T Consensus       240 L~~~l~~sd~~F~~~~~~~  258 (270)
T 3m66_A          240 LDKLVSIPDEIFCEEIAKA  258 (270)
T ss_dssp             HHHHHHSCHHHHHHHTTCS
T ss_pred             HHHHhcCCHHHHHHHHhcC
Confidence            8999999999999999865

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.9e-43  Score=323.11  Aligned_cols=285  Identities=21%  Similarity=0.316  Sum_probs=253.4

Q ss_pred             ccccCCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccc-cchH
Q 020213            3 ISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLN-EKLV   81 (329)
Q Consensus         3 ~~~~~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~-~~l~   81 (329)
                      .++.+|++++++||+++|++++++++++.++|.++..+++++.++++||++.|++++++.+++.++|++|..+.+ +++.
T Consensus        45 ~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~  124 (343)
T 3mva_O           45 HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE  124 (343)
T ss_dssp             GCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHH
T ss_pred             ccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHH
Confidence            357889999999999999999999999999999999999999999999999999999999999999995544444 4899


Q ss_pred             HHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCC------chhhhhhHhhCCceeccCcchhHhHH
Q 020213           82 PMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVP------EKQLGRMILLNPRLISYSIESKLTET  155 (329)
Q Consensus        82 ~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~------~~~l~~~l~~~P~il~~~~~~~l~~~  155 (329)
                      ++++||+++|++.+++.+++.++|++++.++++ .++.+++|+++|++      .+.|.+++.++|.++..+ +++++++
T Consensus       125 p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~  202 (343)
T 3mva_O          125 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKAN  202 (343)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHH
Confidence            999999999999999999999999999999976 59999999976654      567999999999999999 6799999


Q ss_pred             HHHHh-hcCCCchhhHHHHHHhc-CcccccccccchhHHHHHHH----HhCCChhhHHHHHhhcCceeeeccccccchhH
Q 020213          156 VDFLT-SLGLAREGMIGKVLVKH-PFIMGYSVDNRLRPTSEFLK----SVGLKELDLQVVAVKFPEVLCRDVNKILSPNF  229 (329)
Q Consensus       156 ~~~l~-~~G~~~~~~i~~ll~~~-p~ll~~~~~~~l~~~~~~l~----~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~  229 (329)
                      ++||+ ++|+++ +++.+++.+. |.++..+. +.+++++.++.    ++|++++++..|+.++|.++.+|.++ +++|+
T Consensus       203 v~fL~~~~G~~~-~~~~~~i~~~~~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~  279 (343)
T 3mva_O          203 IEFLRSTFNLNS-EELLVLICGPGAEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKI  279 (343)
T ss_dssp             HHHHHHHSCCCH-HHHHHHHHTTTGGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHH
T ss_pred             HHHHHHHcCCCH-HHHHHHHhcCChHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHH
Confidence            99999 599985 5888888774 58888886 48999997776    69999999999999999999999987 99999


Q ss_pred             HHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHH
Q 020213          230 TFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLL  301 (329)
Q Consensus       230 ~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l  301 (329)
                      +||..+|++.++|.    ++|++|++|++ +|++|++||.. .|++...  .+..+|+.| |+++..|++.|
T Consensus       280 ~fl~~mg~~~~~i~----~~P~~l~~sle-ri~~R~~~L~~-~g~~~~~--~~~~~l~~s-~~~F~~~~~~~  342 (343)
T 3mva_O          280 DCLMEENISISQII----ENPRVLDSSIS-TLKSRIKELVN-AGCNLST--LNITLLSWS-KKRYEAKLKKL  342 (343)
T ss_dssp             HHHHTTTCCHHHHH----HSGGGGGSCHH-HHHHHHHHHHT-TTCCSSS--SCGGGGGSC-HHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHH----hCCHHHhcCHH-HHHHHHHHHHH-CCCCCCC--CcchhhcCC-HHHHHHHHhcc
Confidence            99999999999876    99999999986 99999999985 8875442  222788888 77888887653

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=2.5e-37  Score=281.34  Aligned_cols=204  Identities=19%  Similarity=0.350  Sum_probs=190.3

Q ss_pred             hHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHH
Q 020213          115 KLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSE  194 (329)
Q Consensus       115 ~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~  194 (329)
                      .+.+.++.|.++|+++++|+++++.+|.++.    .++.+++.+|..+|+++ ++|.++|+++|++|.++++ +|+++++
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~-e~V~kiL~k~P~lL~~s~e-~L~~~l~  118 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNP-EPVCVVLKKSPQLLKLPIM-QMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCH-HHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCH-HHHHHHHHhChhhccCCHH-HHHHHHH
Confidence            4677888999999999999999999999863    46888999999999985 6999999999999999985 8999999


Q ss_pred             HHHHhCCChhhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhC
Q 020213          195 FLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMG  273 (329)
Q Consensus       195 ~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g  273 (329)
                      ||+++|++.+++.+++.++|++|+++.++ +..++.+|. ++||+.+++.+|+.++|++|++| +++|++|++||+++||
T Consensus       119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mg  196 (335)
T 4fp9_B          119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMG  196 (335)
T ss_dssp             HHHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTC
T ss_pred             HHHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999986 899999987 89999999999999999999999 6899999999999999


Q ss_pred             CChhhhhcCCceeecCcchhhHHHHHHHHHcCC-------------CCChhhhhcccHHHHHHhhccC
Q 020213          274 RQIDEVADYPDFFRHGLKKRLELRHRLLKQRNI-------------YCSLSEMLDCNAKKFLIKFGLF  328 (329)
Q Consensus       274 ~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~gl-------------~~~l~~~l~~s~~~F~~~~~~~  328 (329)
                      +++++|++ |.+|+||++ ||+|||.||+.+|.             +|+|..++.+||++||.++.++
T Consensus       197 l~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~  262 (335)
T 4fp9_B          197 IKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACT  262 (335)
T ss_dssp             CCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCC
T ss_pred             CCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhc
Confidence            99999997 999999998 99999999999987             4689999999999999998754

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=3.1e-37  Score=276.00  Aligned_cols=243  Identities=16%  Similarity=0.308  Sum_probs=212.7

Q ss_pred             hHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHH
Q 020213           44 AADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFF  123 (329)
Q Consensus        44 l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L  123 (329)
                      -.+++++|.++|++.+++.+....+|.+|..++++++.++++||+++|++++++++++.++|.+++.++++ ++|+++||
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            35889999999999999887777777779999988999999999999999999999999999999999986 99999999


Q ss_pred             HHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHH-hhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHH-HhCC
Q 020213          124 QALGVPEKQLGRMILLNPRLISYSIESKLTETVDFL-TSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLK-SVGL  201 (329)
Q Consensus       124 ~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l-~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~-~~g~  201 (329)
                      +++|++++++++++.++|+++..+++ ++.++++|| .++|++ ++++.+++.++|.+++++.+ .++++++++. ++|+
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~-~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~  160 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELS-VKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF  160 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCC-HHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCC-HHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence            99999999999999999999999986 699999999 589998 46999999999999999985 7999999875 5999


Q ss_pred             ChhhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHh--CCChhh
Q 020213          202 KELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVM--GRQIDE  278 (329)
Q Consensus       202 ~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~--g~~~~~  278 (329)
                      +.+++..++.++|.++++|.+ ++++|++||. ++|++.+++.    ++|.+|++|++ +|++|+.|+....  |....+
T Consensus       161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~----~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~  234 (270)
T 3m66_A          161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIV----KFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAK  234 (270)
T ss_dssp             CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHH----HCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTS
T ss_pred             CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHH----hCchHhhCCHH-HHHHHHHHHHHhhccCCCCCC
Confidence            999999999999999999986 5999999996 8999999876    99999999986 9999999999732  332222


Q ss_pred             hhcCCc---eeecCcchhhHHHH
Q 020213          279 VADYPD---FFRHGLKKRLELRH  298 (329)
Q Consensus       279 i~~~P~---~l~~sl~~~i~~R~  298 (329)
                       ..++.   ++..| |+++..|+
T Consensus       235 -~~~~~L~~~l~~s-d~~F~~~~  255 (270)
T 3m66_A          235 -PNYISLDKLVSIP-DEIFCEEI  255 (270)
T ss_dssp             -SSCCCHHHHHHSC-HHHHHHHT
T ss_pred             -CCCCCHHHHhcCC-HHHHHHHH
Confidence             12233   56666 66666654

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.95  E-value=2.7e-27  Score=215.29  Aligned_cols=182  Identities=21%  Similarity=0.334  Sum_probs=160.9

Q ss_pred             cchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHH
Q 020213           78 EKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVD  157 (329)
Q Consensus        78 ~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~  157 (329)
                      ..+...+..|.++|+++.++++++.++|.++..    ++.+.+.+|..+|+++++|+++|.++|+++..++ +++.+++.
T Consensus        44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~  118 (335)
T 4fp9_B           44 LELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHH
Confidence            357888889999999999999999999998753    4667899999999999999999999999999998 47999999


Q ss_pred             HHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCChhhHHHHHhhcCceeeeccccccchhHHHHH-Hh
Q 020213          158 FLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RC  235 (329)
Q Consensus       158 ~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~  235 (329)
                      ||+++|++ ++++.+++.++|.+++++.+ .+..++.+|.. +|++.+++..|+.++|.+|++|.++ +++|++||. +|
T Consensus       119 fL~~lGl~-~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~-L~~K~efLv~~M  195 (335)
T 4fp9_B          119 YLQKLGLG-EGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRM  195 (335)
T ss_dssp             HHHHTTCT-TTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHTTT
T ss_pred             HHHHcCCC-HHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHHh
Confidence            99999997 46899999999999999975 78999999876 9999999999999999999999775 999999998 99


Q ss_pred             CCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCC
Q 020213          236 GFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGR  274 (329)
Q Consensus       236 G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~  274 (329)
                      |++.+++.    + |.+|++|++ +|++|+.||.. +|.
T Consensus       196 gl~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          196 GIKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR  227 (335)
T ss_dssp             CCCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred             CCCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence            99999876    3 999999985 99999999996 774

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.61  E-value=9.1e-15  Score=113.70  Aligned_cols=169  Identities=22%  Similarity=0.406  Sum_probs=149.1

Q ss_pred             HhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHHhCCChhhHHHHHhhcCceeeeccccccchhHHH
Q 020213          152 LTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTF  231 (329)
Q Consensus       152 l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~  231 (329)
                      +-..+.-|--+|+.|+ .+--.+++.|.++...+ ..++.+-.|++.+|+++..+.+++--+|.+++..-.. |...+..
T Consensus        33 lldiisefillglnpe-pvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrl  109 (239)
T 4fzv_B           33 LLDIISEFILLGLNPE-PVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRL  109 (239)
T ss_dssp             TTHHHHHHHHHCCCTT-HHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHH
T ss_pred             HHHHHHHHHhhcCCCC-ceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHH
Confidence            3444455555799874 78788999999999987 4788999999999999999999999999999987665 8899999


Q ss_pred             HH-HhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHcCC----
Q 020213          232 LK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNI----  306 (329)
Q Consensus       232 L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~gl----  306 (329)
                      |+ .+-|+.+++.+++..||.++.-++ ..+..|+.|-.-.||+...+|++. .++.||+. +|+.||-||...|.    
T Consensus       110 lkekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtp  186 (239)
T 4fzv_B          110 LKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTP  186 (239)
T ss_dssp             HHHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCC
T ss_pred             HHHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCC
Confidence            98 889999999999999999999996 799999999888899999999988 89999986 79999999998875    


Q ss_pred             ---------CCChhhhhcccHHHHHHhhc
Q 020213          307 ---------YCSLSEMLDCNAKKFLIKFG  326 (329)
Q Consensus       307 ---------~~~l~~~l~~s~~~F~~~~~  326 (329)
                               ||-+..++..|+.+|+++-.
T Consensus       187 dkkgqtqipnpllkdilrvseaeflarta  215 (239)
T 4fzv_B          187 DKKGQTQIPNPLLKDILRVSEAEFLARTA  215 (239)
T ss_dssp             CSSSCCSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred             CccCCccCCChHHHHHHHHhHHHHHHHHh
Confidence                     68899999999999998853

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.10  E-value=1.1e-09  Score=85.28  Aligned_cols=150  Identities=20%  Similarity=0.363  Sum_probs=130.5

Q ss_pred             cchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHH
Q 020213           78 EKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVD  157 (329)
Q Consensus        78 ~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~  157 (329)
                      .++-..+.-+--+|++++-++-++.+.|.++...+. .++.+..||+.+|+....+.+++-.+|.|+.+.. ..+...+.
T Consensus        31 qqlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvr  108 (239)
T 4fzv_B           31 QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVR  108 (239)
T ss_dssp             CTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHH
Confidence            356667777778999999999999999999999986 5888999999999999999999999999999986 57999999


Q ss_pred             HHh-hcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCChhhHHHHHhhcCceeeeccccccchhHHHHHHh
Q 020213          158 FLT-SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRC  235 (329)
Q Consensus       158 ~l~-~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~  235 (329)
                      .++ .+-|+. .++.+++.++|.++.-+. ..++-+++|..- ||+...+|.+     ...+.+|..+ |+++.-||.++
T Consensus       109 llkekclftv-qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysltk-ikqrhiylerl  180 (239)
T 4fzv_B          109 LLKEKCLFTV-QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLTK-IKQRHIYLERL  180 (239)
T ss_dssp             HHHHHSCCCH-HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHHH-HHHHHHHHHHH
T ss_pred             HHHHhHHhhH-HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHHHH-HHHHHhHHHHh
Confidence            998 577874 699999999999999887 478888888775 9999988754     5778888886 89999999999


Q ss_pred             CC
Q 020213          236 GF  237 (329)
Q Consensus       236 G~  237 (329)
                      |-
T Consensus       181 gr  182 (239)
T 4fzv_B          181 GR  182 (239)
T ss_dssp             TC
T ss_pred             cc
Confidence            86

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=94.64  E-value=0.11  Score=50.44  Aligned_cols=14  Identities=7%  Similarity=0.209  Sum_probs=8.9

Q ss_pred             CCCChhHHHHHHHh
Q 020213           19 RGFNDRTIHDMFKR   32 (329)
Q Consensus        19 ~G~s~~~i~~i~~~   32 (329)
                      +|+|.+++-.|..+
T Consensus       253 ~gls~~qvVaIAsn  266 (1047)
T 3ugm_A          253 HGLPPDQVVAIASN  266 (1047)
T ss_dssp             SCCCHHHHHHHHSS
T ss_pred             cCCCHHHHHHHHhc
Confidence            66666666666553

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=94.57  E-value=0.079  Score=51.48  Aligned_cols=13  Identities=8%  Similarity=0.253  Sum_probs=7.5

Q ss_pred             CCCChhHHHHHHH
Q 020213           19 RGFNDRTIHDMFK   31 (329)
Q Consensus        19 ~G~s~~~i~~i~~   31 (329)
                      +|+|.+++..|..
T Consensus       287 ~gls~~qvvaIAs  299 (1047)
T 3ugm_A          287 HGLTPDQVVAIAS  299 (1047)
T ss_dssp             HCCCHHHHHHHHS
T ss_pred             ccCCHHHHHHHHh
Confidence            5666666655554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=92.56  E-value=0.76  Score=34.60  Aligned_cols=98  Identities=7%  Similarity=0.044  Sum_probs=60.6

Q ss_pred             chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHH------hCCCCCCChhHHHhhCCCccccccccchHHH
Q 020213           10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLK------SIGILERKLPNVVSKCPKILTLGLNEKLVPM   83 (329)
Q Consensus        10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~------~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~   83 (329)
                      ..++.-|.++||+...+.+.+....       .+.+..++||.      ..|+++.++...+..+..--...  ..-...
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g-------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~   79 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG-------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQL   79 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC-------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC-------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHH
Confidence            4677888999999999998887663       14455556654      34666666666554332100000  112245


Q ss_pred             HHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH
Q 020213           84 VECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ  124 (329)
Q Consensus        84 l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~  124 (329)
                      +.-|.++||+.+.+.+++..+    .    +++...++||.
T Consensus        80 v~~L~eMGF~~~~a~~AL~~~----~----nd~erAlewL~  112 (118)
T 4ae4_A           80 MSKFKEMGFELKDIKEVLLLH----N----NDQDNALEDLM  112 (118)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHT----T----TCHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHc----C----CCHHHHHHHHH
Confidence            777778888888888887776    2    33455566664

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=91.98  E-value=2.3  Score=31.91  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             HHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH------HCCCCchhhhhhHhhCCceeccCcchhHhH
Q 020213           81 VPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ------ALGVPEKQLGRMILLNPRLISYSIESKLTE  154 (329)
Q Consensus        81 ~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~------~lG~~~~~l~~~l~~~P~il~~~~~~~l~~  154 (329)
                      +..+.-|.++|++...+.+.+.++-    .++    ...++||-      +.|+++.++..-+..+..--..  .....+
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g----~~~----e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~~   78 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG----ANI----EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFLQ   78 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC----SCH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC----cCH----HHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCHH
Confidence            5677888889999998888887762    233    33455553      5677776665555443210000  112345


Q ss_pred             HHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH
Q 020213          155 TVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS  198 (329)
Q Consensus       155 ~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~  198 (329)
                      .+.-|.++||+ .+.+.+++..+.        +.+.+.+++|..
T Consensus        79 ~v~~L~eMGF~-~~~a~~AL~~~~--------nd~erAlewL~~  113 (118)
T 4ae4_A           79 LMSKFKEMGFE-LKDIKEVLLLHN--------NDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHHTTCC-HHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-HHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence            67888889997 457777777653        467888888775

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=91.45  E-value=0.78  Score=41.21  Aligned_cols=112  Identities=12%  Similarity=0.088  Sum_probs=58.9

Q ss_pred             CCCCchhhhhhHhhCCceeccCcchhHhHHHHHHh-hcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCCh
Q 020213          126 LGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT-SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKE  203 (329)
Q Consensus       126 lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~-~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~  203 (329)
                      ++++++++.+|-.+.-.-  .-+ +.+......|. .+|+++ +++..|-..+..--.  . +.+......+.. .|++.
T Consensus       140 l~Lsp~qvVaIAsn~GGk--qAL-eaV~~llpvL~~a~~Ls~-~qVVaIAsn~GGkQA--L-eaV~~llpvl~~~~~Ls~  212 (463)
T 4hpz_A          140 LNLTPDQVVAIASNIGGK--QAL-ETVQRLLPVLCQDHGLTP-QQVVAIASNGGGKQA--L-ETVQRLLPVLCQAHGLTP  212 (463)
T ss_dssp             TCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHHHCCCH-HHHHHHHTSTTHHHH--H-HHHHHHHHHHHHHHCCCH
T ss_pred             cCCCHHHHHHHHhcCccH--HHH-HHHHHHHHHHhhhcCCCH-HHHHHHhhcCchHHH--H-HHHHHHHHHhhccccCCH
Confidence            677777777776554431  112 23555555565 478876 466655444331111  1 244555556655 78888


Q ss_pred             hhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHH
Q 020213          204 LDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVA  247 (329)
Q Consensus       204 ~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~  247 (329)
                      ++|..+-...-.-  .-.+ .+..-.-.|+ ..||+.++|.++-.
T Consensus       213 aqVVaIAsn~GGk--QALe-aV~~llpvl~~~~gls~aqVVaIAs  254 (463)
T 4hpz_A          213 DQVVAIASHDGGK--QALE-TVQRLLPVLCQDHGLTPQQVVAIAS  254 (463)
T ss_dssp             HHHHHHHSSTTHH--HHHH-HHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred             HHHHHHhhccccH--HHHH-HHHhhhhhhhhhccCCHHHHHHHhc
Confidence            8877764322100  0112 1333334444 47888888876644

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=90.76  E-value=0.23  Score=45.27  Aligned_cols=42  Identities=12%  Similarity=0.222  Sum_probs=32.2

Q ss_pred             cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCC
Q 020213            9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILE   58 (329)
Q Consensus         9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~   58 (329)
                      -+..+.-|.++||++.++.+.++..-       .+....++||.+ |+++
T Consensus       168 ~~~~i~~l~~MGf~~~~~~~AL~a~~-------nn~~~A~e~L~~-gip~  209 (368)
T 1oqy_A          168 YETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT-GIPG  209 (368)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSC-------SSTTHHHHTTTT-SSTT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHh-CCCc
Confidence            34567889999999999999988552       366778899876 5654

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=90.54  E-value=0.33  Score=44.27  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=12.8

Q ss_pred             HhHHHHHHhhcCCCchhhHHHHHHh
Q 020213          152 LTETVDFLTSLGLAREGMIGKVLVK  176 (329)
Q Consensus       152 l~~~~~~l~~~G~~~~~~i~~ll~~  176 (329)
                      .+..|..|.++||++ +.+.++++.
T Consensus       168 ~~~~i~~l~~MGf~~-~~~~~AL~a  191 (368)
T 1oqy_A          168 YETMLTEIMSMGYER-ERVVAALRA  191 (368)
T ss_dssp             HHHHHHHHHTTTCCS-HHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCH-HHHHHHHHH
Confidence            455555555666653 355555554

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=90.39  E-value=0.8  Score=41.14  Aligned_cols=124  Identities=12%  Similarity=0.134  Sum_probs=68.7

Q ss_pred             HhHHHHHHH-HCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHh-hcCCCchhhHHHHHHhcCcccccccccchhHHH
Q 020213          116 LCPLLAFFQ-ALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT-SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTS  193 (329)
Q Consensus       116 l~~~v~~L~-~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~-~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~  193 (329)
                      +......|. ..|++++++.++-.+.-.=  .-+ +.+......+. ..|+++ ++|..|-.....--.  . +.+..-.
T Consensus       163 V~~llpvL~~a~~Ls~~qVVaIAsn~GGk--QAL-eaV~~llpvl~~~~~Ls~-aqVVaIAsn~GGkQA--L-eaV~~ll  235 (463)
T 4hpz_A          163 VQRLLPVLCQDHGLTPQQVVAIASNGGGK--QAL-ETVQRLLPVLCQAHGLTP-DQVVAIASHDGGKQA--L-ETVQRLL  235 (463)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHTSTTHH--HHH-HHHHHHHHHHHHHHCCCH-HHHHHHHSSTTHHHH--H-HHHHHHH
T ss_pred             HHHHHHHHhhhcCCCHHHHHHHhhcCchH--HHH-HHHHHHHHHhhccccCCH-HHHHHHhhccccHHH--H-HHHHhhh
Confidence            333444454 3899999988887655421  112 24555666665 478986 477765544322111  1 2444445


Q ss_pred             HHHHH-hCCChhhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHHhC
Q 020213          194 EFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVAAY  249 (329)
Q Consensus       194 ~~l~~-~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~~~  249 (329)
                      ..+.. .|++.++|..|-...-.-  .-.+ .++.-.-.|+ .+|++.++|..|-...
T Consensus       236 pvl~~~~gls~aqVVaIAsn~GGk--QALe-aV~~llP~L~~~~gls~~qVVaIAsN~  290 (463)
T 4hpz_A          236 PVLCQDHGLTPQQVVAIASNIGGK--QALE-TVQRLLPVLCQDHGLTPDQVVAIASND  290 (463)
T ss_dssp             HHHHHHSCCCHHHHHHHHSSTTHH--HHHH-HHHHHHHHHHHTTCCCHHHHHHHHTST
T ss_pred             hhhhhhccCCHHHHHHHhcccchH--HHHH-HHHhhchhhhhccCCCHHHhhhhhcCc
Confidence            55554 899999988765422110  0112 2333344555 4799999988664443

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A

Probab=90.24  E-value=1.4  Score=39.96  Aligned_cols=46  Identities=7%  Similarity=0.029  Sum_probs=20.2

Q ss_pred             CCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHh-CCCCCCChhHHHh
Q 020213           19 RGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKS-IGILERKLPNVVS   66 (329)
Q Consensus        19 ~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~-~G~~~~~i~~i~~   66 (329)
                      ++++++++..|..++..-  .-.+.+......|+. +|++++++..|-+
T Consensus        65 l~ls~~qvvaIA~n~GGk--qAleaV~~l~p~L~~a~gLs~~qVVaIAs  111 (499)
T 3v6t_A           65 LNLTPEQVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPQQVVAIAS  111 (499)
T ss_dssp             TCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred             cCCCHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhcCCCHHHhhhhhh
Confidence            566666665555433210  001222333333333 5666666655443

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A

Probab=87.19  E-value=3.2  Score=37.70  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=56.4

Q ss_pred             HHHHh-CCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHh-CCCCCCChhHHHhhCCCccccccccchHHHHHHHH-HC
Q 020213           14 WFLKD-RGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKS-IGILERKLPNVVSKCPKILTLGLNEKLVPMVECLA-TL   90 (329)
Q Consensus        14 ~~L~~-~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~-~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~-~l   90 (329)
                      ..|+. +|++.+++..|......  ..-.+.+...+..|+. +|++.+++..|-..+---=.   -+.+...+--|+ ..
T Consensus        93 p~L~~a~gLs~~qVVaIAsn~GG--kqALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~GGkQA---LeaV~~llpvL~~a~  167 (499)
T 3v6t_A           93 PVLCQAHGLTPQQVVAIASHDGG--KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA---LETVQALLPVLCQAH  167 (499)
T ss_dssp             HHHHHHSCCCHHHHHHHHSSTTH--HHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHH---HHHHHHHHHHHHHTS
T ss_pred             HHHHHhcCCCHHHhhhhhhcCcc--HHHHHHHHHhhHHhhhhcCCCHHHhHHHhhcCCcHHH---HHHHHHhhHHHHHhc
Confidence            34444 88888888777765321  0002334444455554 68888887776432210000   012333333343 37


Q ss_pred             CCChhhHHHHHHhCCCcccccchhhHhHHHHHHHH-CCCCchhhhhhHhhC
Q 020213           91 GTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQA-LGVPEKQLGRMILLN  140 (329)
Q Consensus        91 G~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~-lG~~~~~l~~~l~~~  140 (329)
                      |++++++.++-...-   +..--+.++...-.|.. .|++.+++..|-.+.
T Consensus       168 gls~~qVvaIAsN~G---GkQALeaV~~llpvl~~~~gls~~qVVaiAsn~  215 (499)
T 3v6t_A          168 GLTPEQVVAIASNGG---GKQALETVQRLLPVLCQAHGLTPQQVVAIASNG  215 (499)
T ss_dssp             CCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSST
T ss_pred             CCCHHHHHHHhcccc---hHHHHHHHHHhhhhHHhhccCCHHHHHHHhhcc
Confidence            788777777533210   00000122222333333 566666666655444

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=84.99  E-value=0.86  Score=29.00  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=16.0

Q ss_pred             cchhHHHHHHhCCChhHHHHHHHh
Q 020213          225 LSPNFTFLKRCGFADGQIAALVAA  248 (329)
Q Consensus       225 l~~k~~~L~~~G~s~~~v~~l~~~  248 (329)
                      +..|++||++-|++.+||..++.+
T Consensus        30 ~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           30 LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            455677777777777777666554

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=84.57  E-value=1.8  Score=27.53  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHCCCChhhHHHHHHh
Q 020213           80 LVPMVECLATLGTKPYEVASAITR  103 (329)
Q Consensus        80 l~~~l~~L~~lG~~~~~~~~~l~~  103 (329)
                      +..+++||++-|++.++|..++.+
T Consensus        30 ~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           30 LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            556666666666666666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00