Citrus Sinensis ID: 020228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MASNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYCL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHEEccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccccccccccHHHHHHHccHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEcc
Coil and Loop (DISEMBL)
masnsskspmlpvsepargdegekerllkgdeklfrgSAMTRRGANAAISYMACAVLLVMFNKAalssynfpCANVITLLQMISSCSFLYFLRRWKIINftmgdslmtsdssstfvplktLMHTLPLAVAYLLYMVVSVEsvrgvnvpmyttLRRTTVAFTMIMEYFLAgqkytppvvgsVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIgkssglnsfglmwcngvicgpLLLLWTFLRGdlettinfpyllspGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGnlkvcfptTLHIAIATNfglhtycl
Flexible Loop (DISEMBL)
masnsskspmlpvsepargdegekerllkgdeklfrgsAMTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVEsvrgvnvpmyttLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYCL
Low Complexity Region (SEG)
MASNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMvvsvesvrgvnvPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYCL
Disordered region (IsUnstruct)
******************************************RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYC*
Disordered Region (DISOPRED)
*********************************************NAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGK**GLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYCL
Disordered Region (DISEMBL)
************************ERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYCL
Disordered Region (DISPRO)
*************************************SAMTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYCL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTYCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q9NTN3	355	UDP-glucuronic acid/UDP-N	yes	no	0.841	0.780	0.300	5e-27
Q18779	329	UDP-sugar transporter sqv	yes	no	0.765	0.765	0.342	6e-27
Q5RDC9	355	UDP-N-acetylglucosamine/U	yes	no	0.841	0.780	0.296	1e-26
Q15B89	343	UDP-N-acetylglucosamine/U	yes	no	0.841	0.807	0.296	2e-26
A2VE55	355	UDP-N-acetylglucosamine/U	yes	no	0.841	0.780	0.293	6e-26
Q95YI5	373	UDP-sugar transporter UST	yes	no	0.890	0.785	0.281	2e-25
Q54YK1	382	Putative UDP-sugar transp	yes	no	0.814	0.701	0.256	1e-24
Q76EJ3	337	UDP-N-acetylglucosamine/U	no	no	0.753	0.735	0.306	3e-22
Q762D5	326	UDP-N-acetylglucosamine/U	yes	no	0.753	0.760	0.298	4e-21
Q941R4	333	GDP-mannose transporter G	no	no	0.878	0.867	0.256	2e-10

>sp|Q9NTN3|S35D1_HUMAN UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter OS=Homo sapiens GN=SLC35D1 PE=1 SV=1

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 147/293 (50%), Gaps = 16/293 (5%)

Query: 18  RGDEGEKERLLKGDEKLFRGSAMTRR---GANAAISYMACAVLLVMFNKAALSSYNFPCA 74
           +G+   K   L+ +E+L   SA T        AA  Y   + L+V+ NK+ L++Y FP +
Sbjct: 13  KGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPSS 72

Query: 75  NVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLY 134
             + L QM+++ + L+  +  +++ F   D           VP KT     PL + Y   
Sbjct: 73  LCVGLGQMVATVAVLWVGKALRVVKFPDLDR---------NVPRKTF----PLPLLYFGN 119

Query: 135 MVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194
            +  + S + +N+PM+T LRR ++ FTM  E  L  + ++  +  +V  +I+GAFVA + 
Sbjct: 120 QITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASS 179

Query: 195 DLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRG 254
           DL+FD  GYA + + ++ TA   A + +   S  L  +GL++ N +      L   +  G
Sbjct: 180 DLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTG 239

Query: 255 DLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLK 307
           D +  + F       FL+    SC++ F L Y+  L T  NSA+T TI G +K
Sbjct: 240 DAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIK 292

Transports both UDP-glucuronic acid (UDP-GlcA) and UDP-N-acetylgalactosamine (UDP-GalNAc) from the cytoplasm to into the endoplasmic reticulum lumen. May participate in glucuronidation and/or chondroitin sulfate biosynthesis.
Homo sapiens (taxid: 9606)

>sp|Q18779|SQV7_CAEEL UDP-sugar transporter sqv-7 OS=Caenorhabditis elegans GN=sqv-7 PE=1 SV=1

 Score =  121 bits (304), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 145/269 (53%), Gaps = 17/269 (6%)

Query: 47  AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
           +A+ Y   +VL+V  NK  L++Y FP    + + QM+++   L+F + ++I+ F      
Sbjct: 15  SAVFYGVISVLIVFVNKILLTNYKFPSFLFVGVGQMMATILILFFAKMFRIVQFP----- 69

Query: 107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEY 166
            + DSS   +P K +    PL + Y   ++  +   + +N+PM+T LRR ++  TMI+E+
Sbjct: 70  -SLDSS---IPRKIM----PLPLLYFFNLISGLGGTQMINLPMFTVLRRFSILMTMILEF 121

Query: 167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKS 226
           ++   K +  V  SVGL+I G+F+A   DLSFD  GY ++F+ NI TA       +   +
Sbjct: 122 YILNVKASKAVKISVGLMIGGSFIAAIYDLSFDALGYTMIFINNICTAALGVYTKQKLDA 181

Query: 227 SGLNSFGLMWCNGV-ICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCF--SCILAFF 283
             L  +GLM+ N + +  P L +  +  GDL+   +F    S    V  CF  SCI  F 
Sbjct: 182 KDLGKYGLMFYNCLFMLLPALCVVQY-TGDLDRAYSFMLSDSMTSSVWTCFLLSCICGFV 240

Query: 284 LNYSIFLNTTLNSAVTQTICGNLKVCFPT 312
           LNYS+ L T  NSA+T T  G +K  F T
Sbjct: 241 LNYSLVLCTHHNSALTTTCVGPIKNLFVT 269

Involved in the import of UDP-glucuronic acid (UDP-GlcA), UDP-N-acetylgalactosamine (UDP-GalNAc) and UDP-galactose (UDP-Gal) from the cytoplasm into the Golgi lumen for the biosynthesis of glycoconjugates that play a pivotal role in development.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5RDC9|S35D2_PONAB UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS=Pongo abelii GN=SLC35D2 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 146/293 (49%), Gaps = 16/293 (5%)

Query: 18  RGDEGEKERLLKGDEKLFRGSAMTRR---GANAAISYMACAVLLVMFNKAALSSYNFPCA 74
           +G+   K   L+ +E+L   SA T        AA  Y   + L+V+ NK+ L++Y FP +
Sbjct: 13  KGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPSS 72

Query: 75  NVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLY 134
             + L QM+++ + L+  +  +++ F   D           VP KT     PL + Y   
Sbjct: 73  LCVGLGQMVATVAVLWVGKALRVVKFPDLDR---------NVPRKTF----PLPLLYFGN 119

Query: 135 MVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194
            +  + S + +N+PM+T LRR ++ FTM  E  L  + ++  +  +V  +I+GAFVA + 
Sbjct: 120 QITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASS 179

Query: 195 DLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRG 254
           DL+FD  GY  + + ++ TA   A + +   S  L  +GL++ N +      L   +  G
Sbjct: 180 DLAFDLEGYVFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTG 239

Query: 255 DLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLK 307
           D +  + F       FL+    SC++ F L Y+  L T  NSA+T TI G +K
Sbjct: 240 DAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIK 292

Antiporter transporting nucleotide sugars such as UDP-N-acetylglucosamine (UDP-GlcNAc), UDP-glucose (UDP-Glc) and GDP-mannose (GDP-Man) pooled in the cytosol into the lumen of the Golgi in exchange for the corresponding nucleosides monophosphates (UMP for UDP-sugars and GMP for GDP-sugars). May take part in heparan sulfate synthesis by supplying UDP-Glc-NAc, the donor substrate, and thus be involved in growth factor signaling.

Pongo abelii (taxid: 9601)

>sp|Q15B89|S35D2_PIG UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment) OS=Sus scrofa GN=SLC35D2 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 16/293 (5%)

Query: 18  RGDEGEKERLLKGDEKLFRGSAMTRR---GANAAISYMACAVLLVMFNKAALSSYNFPCA 74
           +G+   K    + DE+L   SA T        AA  Y   + L+V+ NK+ L++Y FP +
Sbjct: 1   KGEAPAKSSTHRHDEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPSS 60

Query: 75  NVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLY 134
             + L QM+++ + L+  +  +++ F   D           VP KT     PL + Y   
Sbjct: 61  LCVGLGQMVATVAVLWVGKALRVVKFPDFDR---------NVPRKTF----PLPLLYFGN 107

Query: 135 MVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194
            +  + S + +N+PM+T LRR ++ FTM  E  L  + ++  +  +V  +I+GAFVA + 
Sbjct: 108 QITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASS 167

Query: 195 DLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRG 254
           DL+FD  GY  + + ++ TA   A + +   S  L  +GL++ N +      L   ++ G
Sbjct: 168 DLAFDLEGYVFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYITG 227

Query: 255 DLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLK 307
           D +  ++F       FL+    SC++ F L Y+  L T  NSA+T TI G +K
Sbjct: 228 DAQKAMDFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIK 280

Antiporter transporting nucleotide sugars such as UDP-N-acetylglucosamine (UDP-GlcNAc), UDP-glucose (UDP-Glc) and GDP-mannose (GDP-Man) pooled in the cytosol into the lumen of the Golgi in exchange for the corresponding nucleosides monophosphates (UMP for UDP-sugars and GMP for GDP-sugars). May take part in heparan sulfate synthesis by supplying UDP-Glc-NAc, the donor substrate, and thus be involved in growth factor signaling.

Sus scrofa (taxid: 9823)

>sp|A2VE55|S35D2_BOVIN UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS=Bos taurus GN=SLC35D2 PE=2 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 146/293 (49%), Gaps = 16/293 (5%)

Query: 18  RGDEGEKERLLKGDEKLFRGSAMTRR---GANAAISYMACAVLLVMFNKAALSSYNFPCA 74
           +G+   K    + +E+L   SA T        AA  Y   + L+V+ NK+ L++Y FP +
Sbjct: 13  KGEAPAKSSTHRHEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPSS 72

Query: 75  NVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLY 134
             + L QM+++ + L+  +  +++ F   D           VP KT     PL + Y   
Sbjct: 73  LCVGLGQMVATVAVLWVGKALRVVKFPDFDR---------NVPRKTF----PLPLLYFGN 119

Query: 135 MVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194
            +  + S + +N+PM+T LRR ++ FTM  E  L  + ++  +  +V  +I+GAFVA + 
Sbjct: 120 QITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASS 179

Query: 195 DLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRG 254
           DL+FD  GY  + + ++ TA   A + +   S  L  +GL++ N +      L   +  G
Sbjct: 180 DLAFDLEGYVFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTG 239

Query: 255 DLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLK 307
           D +  ++F       FL+    SC++ F L Y+  L T  NSA+T TI G +K
Sbjct: 240 DAQKALDFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIK 292

Antiporter transporting nucleotide sugars such as UDP-N-acetylglucosamine (UDP-GlcNAc), UDP-glucose (UDP-Glc) and GDP-mannose (GDP-Man) pooled in the cytosol into the lumen of the Golgi in exchange for the corresponding nucleosides monophosphates (UMP for UDP-sugars and GMP for GDP-sugars). May take part in heparan sulfate synthesis by supplying UDP-GlcNAc, the donor substrate, and thus be involved in growth factor signaling.

Bos taurus (taxid: 9913)

>sp|Q95YI5|US74C_DROME UDP-sugar transporter UST74c OS=Drosophila melanogaster GN=frc PE=1 SV=2

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 151/316 (47%), Gaps = 23/316 (7%)

Query: 15  EPARGDEGEKERLLKGD------EKLFRGSAMTRRGANAAISYMACAVLLVMFNKAALSS 68
           E   G   ++  LL G        +    SA+  +   +A+ Y   + ++ + NK  L+S
Sbjct: 28  EEKMGGSADRSSLLDGSGSKELSHREREDSALFVKKIGSALFYGLSSFMITVVNKTVLTS 87

Query: 69  YNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLK--TLMHTLP 126
           Y+FP    ++L Q+ +S   L   +R K++NF                PL+  T     P
Sbjct: 88  YHFPSFLFLSLGQLTASIVVLGMGKRLKLVNFP---------------PLQRNTFAKIFP 132

Query: 127 LAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIIL 186
           L + +L  M+  +   + +++PM+  LRR ++  TM++E  + G + +  V  SV  +I 
Sbjct: 133 LPLIFLGNMMFGLGGTKTLSLPMFAALRRFSILMTMLLELKILGLRPSNAVQVSVYAMIG 192

Query: 187 GAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLL 246
           GA +A + DLSF+  GY  V + N  TA     + +   +S +  +GLM+ N +      
Sbjct: 193 GALLAASDDLSFNMRGYIYVMITNALTASNGVYVKKKLDTSEIGKYGLMYYNSLFMFLPA 252

Query: 247 LLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNL 306
           L   ++ G+L+  +NF       F+V    SC++ F L+YS  L T  NSA+T TI G L
Sbjct: 253 LALNYVTGNLDQALNFEQWNDSVFVVQFLLSCVMGFILSYSTILCTQFNSALTTTIVGCL 312

Query: 307 KVCFPTTLHIAIATNF 322
           K    T L + I  ++
Sbjct: 313 KNICVTYLGMFIGGDY 328

Involved in the import of UDP-sugars from the cytoplasm into the Golgi lumen.

Drosophila melanogaster (taxid: 7227)

>sp|Q54YK1|Y8631_DICDI Putative UDP-sugar transporter DDB_G0278631 OS=Dictyostelium discoideum GN=DDB_G0278631 PE=3 SV=2

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 158/312 (50%), Gaps = 44/312 (14%)

Query: 20  DEGEKERLLKGDEKLFRGSAMT-------------RRGANA----AISYMAC-------A 55
           D+ EK ++   DE +F+                   RG+N+     I++          A
Sbjct: 48  DDNEKMKI-SEDESIFKSINNDNKNQQNDNIINSFNRGSNSFLFNIINFYKSPRFLSGGA 106

Query: 56  VLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTF 115
           VLL +     +++Y+F  +N +   QM+ +   L+ L+ + I+              +T 
Sbjct: 107 VLLYV-----MTTYDFSASNFLLFNQMVVTIVILHILKHFNILKI------------NTN 149

Query: 116 VPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTP 175
              +T+   +PL+  Y++ +++ ++S++ +N+PMY+ L+R      ++MEYF+  +   P
Sbjct: 150 FEKETIKKLMPLSFCYIINVLLGLDSLKQLNIPMYSALKRLVAVVILVMEYFILKKVSPP 209

Query: 176 PVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLM 235
            ++ SV ++++GA VAG  DLSF+  GY++V L+ I  A YL  + ++   S ++++ ++
Sbjct: 210 KIIASVVVMVIGAVVAGITDLSFNSLGYSLVLLSCIFQASYLIYVKKVA--SNMSTYDML 267

Query: 236 WCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLN 295
           + N V+  P+ +    +  ++E    F +L    F      S  L FFLN+ IF  T++N
Sbjct: 268 YYNSVLSLPITIFLMIVNQEIEYFQTFEHLYDSSFQAYFILSIFLGFFLNFCIFFCTSVN 327

Query: 296 SAVTQTICGNLK 307
           S +T ++ G +K
Sbjct: 328 SPLTTSVTGQVK 339

May be nvolved in the import of UDP-sugars.

Dictyostelium discoideum (taxid: 44689)

>sp|Q76EJ3|S35D2_HUMAN UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS=Homo sapiens GN=SLC35D2 PE=1 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 13/261 (4%)

Query: 47  AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
           +A+ Y  C+ L+V+ NKA L++Y FP    + + QM ++   LY  +  KII+F   D  
Sbjct: 30  SALFYGTCSFLIVLVNKALLTTYGFPSPIFLGIGQMAATIMILYVSKLNKIIHFPDFDKK 89

Query: 107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEY 166
                    +P+K      PL + Y+   +  + S   +++PM+T LR+ T+  T+++E 
Sbjct: 90  ---------IPVKLF----PLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPLTLLLET 136

Query: 167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKS 226
            + G++Y+  ++ SV  IILGAF+A   DL+F+  GY  VFL +I TA       +    
Sbjct: 137 IILGKQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDP 196

Query: 227 SGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNY 286
             L  +G+++ N        L+ +   GDL+    F    +  F++    SC L F L Y
Sbjct: 197 KELGKYGVLFYNACFMIIPTLIISVSTGDLQQATEFNQWKNVVFILQFLLSCFLGFLLMY 256

Query: 287 SIFLNTTLNSAVTQTICGNLK 307
           S  L +  NSA+T  + G +K
Sbjct: 257 STVLCSYYNSALTTAVVGAIK 277

Antiporter transporting nucleotide sugars such as UDP-N-acetylglucosamine (UDP-GlcNAc), UDP-glucose (UDP-Glc) and GDP-mannose (GDP-Man) pooled in the cytosol into the lumen of the Golgi in exchange for the corresponding nucleosides monophosphates (UMP for UDP-sugars and GMP for GDP-sugars). May take part in heparan sulfate synthesis by supplying UDP-Glc-NAc, the donor substrate, and thus be involved in growth factor signaling.

Homo sapiens (taxid: 9606)

>sp|Q762D5|S35D2_MOUSE UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS=Mus musculus GN=Slc35d2 PE=2 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 13/261 (4%)

Query: 47  AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
           +A+ Y  C+ L+V+ NKA L++Y FP   V+ + QM ++   LY  +  KII+F   D  
Sbjct: 18  SALFYGTCSFLIVLVNKALLTTYGFPSPIVLGIGQMATTIMILYVFKLNKIIHFPDFDK- 76

Query: 107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEY 166
                       K      PL + Y+   +  + S   +++PM+T LR+ T+ FT+++E 
Sbjct: 77  ------------KIPGKLFPLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPFTLLLEA 124

Query: 167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKS 226
            + G +Y+  ++ SV  I+LGAF+A   DL+F+  GY  VFL +I TA       +    
Sbjct: 125 IILGTQYSLNIILSVLAIVLGAFIAAGSDLTFNLEGYVFVFLNDIFTAANGVYTKQKMDP 184

Query: 227 SGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNY 286
             L  +G+++ N        ++ +   GD +    F +  +  F++    SC+L F L Y
Sbjct: 185 KELGKYGVLFYNACFMLIPTVIISVSTGDFQQATEFRHWKNVLFIIQFLLSCLLGFLLMY 244

Query: 287 SIFLNTTLNSAVTQTICGNLK 307
           S  L +  NSA+T  + G +K
Sbjct: 245 STALCSYYNSALTTAVVGAIK 265

Antiporter transporting nucleotide sugars such as UDP-N-acetylglucosamine (UDP-GlcNAc), UDP-glucose (UDP-Glc) and GDP-mannose (GDP-Man) pooled in the cytosol into the lumen of the Golgi in exchange for the corresponding nucleosides monophosphates (UMP for UDP-sugars and GMP for GDP-sugars). May take part in heparan sulfate synthesis by supplying UDP-Glc-NAc, the donor substrate, and thus be involved in growth factor signaling.

Mus musculus (taxid: 10090)

>sp|Q941R4|GONS1_ARATH GDP-mannose transporter GONST1 OS=Arabidopsis thaliana GN=GONST1 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 151/328 (46%), Gaps = 39/328 (11%)

Query: 19  GDEGEKERLLK--GDEKLFRGSAMTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANV 76
           G + E  + +K  GD+ + R   +  R   + ++Y   +  +++ NK  LSSYNF     
Sbjct: 8   GVDLEDGKTVKSGGDKPIPR--KIHNRALLSGLAYCISSCSMILVNKFVLSSYNFNAGIF 65

Query: 77  ITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMV 136
           + L Q   S            +   +G SLM   ++   + L+ +    P+ V ++  ++
Sbjct: 66  LMLYQNFVS------------VIIVVGLSLMGLITTEP-LTLRLMKVWFPVNVIFVGMLI 112

Query: 137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL 196
            S+ S++ +NV M T L+  T   T + E +L  +++   V  ++ L+I+ A   G  DL
Sbjct: 113 TSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDL 172

Query: 197 SFDFFGYAVVFLANITTAIY-------LATIARIGKSSGLNSFGLMWCNGVICGPLLLLW 249
           SF+  GYA        TA Y       + T  ++ +S  LN F ++  N  +  PL LL 
Sbjct: 173 SFNAVGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLL 232

Query: 250 TFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYS--IFLNTTLNSAVTQTICGNLK 307
           ++   +++     P L  P F +V+  S +L   ++++   FL+ T   A T ++ G+L 
Sbjct: 233 SYFFNEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQT--GATTYSLVGSLN 290

Query: 308 ---------VCF--PTTLHIAIATNFGL 324
                    V F  PT+L  + +  FGL
Sbjct: 291 KIPLSIAGIVLFNVPTSLQNSASILFGL 318

Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen. Required for the luminal synthesis of a variety of plant cell surface components.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
255548892	356	UDP-sugar transporter, putative [Ricinus	0.939	0.867	0.783	1e-140
224089268	354	predicted protein [Populus trichocarpa]	0.966	0.898	0.773	1e-133
449437148	353	PREDICTED: UDP-N-acetylglucosamine/UDP-g	0.927	0.864	0.762	1e-133
225430308	340	PREDICTED: UDP-sugar transporter UST74c	0.905	0.876	0.754	1e-131
363807086	345	uncharacterized protein LOC100819763 [Gl	0.911	0.869	0.740	1e-128
357436995	346	UDP-N-acetylglucosamine/UDP-glucose/GDP-	0.908	0.864	0.741	1e-128
356552517	345	PREDICTED: UDP-glucuronic acid/UDP-N-ace	0.911	0.869	0.733	1e-127
145334197	344	UDP-sugar transporter-like protein [Arab	0.927	0.886	0.718	1e-124
297798730	342	hypothetical protein ARALYDRAFT_491505 [	0.911	0.877	0.710	1e-122
334187081	359	UDP-sugar transporter-like protein [Arab	0.927	0.849	0.688	1e-121

>gi|255548892|ref|XP_002515502.1| UDP-sugar transporter, putative [Ricinus communis] gi|223545446|gb|EEF46951.1| UDP-sugar transporter, putative [Ricinus communis]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/310 (78%), Positives = 280/310 (90%), Gaps = 1/310 (0%)

Query: 1   MASNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVM 60
           MASNSS + +LP+S  +  D+ EKERL+KGD+K+FRGSAMT+RGA AAISYM+CAVLLV+
Sbjct: 1   MASNSSNNSILPLST-SPSDDKEKERLIKGDDKIFRGSAMTKRGAYAAISYMSCAVLLVI 59

Query: 61  FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKT 120
           FNKAALSS+NFP ANVITL QMISS SFLY LRRW+II+FT+G+S+  SD   TFVP +T
Sbjct: 60  FNKAALSSFNFPSANVITLFQMISSVSFLYALRRWRIISFTVGESVPISDGKPTFVPFET 119

Query: 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGS 180
           LMHTLPL+ AYLLYM+V++ESVRGVNVPMYTTLRRTTVAFTM+MEYFLAGQ+YTPP+VGS
Sbjct: 120 LMHTLPLSAAYLLYMLVTMESVRGVNVPMYTTLRRTTVAFTMVMEYFLAGQRYTPPIVGS 179

Query: 181 VGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGV 240
           VG+II GAF+AGARDLSFDF+GYAVVFLANITTAIYLATI+RIG SSGLNSFGLMWCNG+
Sbjct: 180 VGVIIFGAFIAGARDLSFDFYGYAVVFLANITTAIYLATISRIGNSSGLNSFGLMWCNGI 239

Query: 241 ICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQ 300
           +CGP+LL WTF RG+LE TINFPYL +PGF+ VL  SC+LAFFLNYSIFLNTTLNSA+TQ
Sbjct: 240 LCGPVLLFWTFFRGELEMTINFPYLFTPGFMAVLLLSCLLAFFLNYSIFLNTTLNSALTQ 299

Query: 301 TICGNLKVCF 310
           TICGNLK  F
Sbjct: 300 TICGNLKDLF 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089268|ref|XP_002308668.1| predicted protein [Populus trichocarpa] gi|222854644|gb|EEE92191.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/322 (77%), Positives = 277/322 (86%), Gaps = 4/322 (1%)

Query: 1   MASNSSKSPMLPVSEPARGDEG--EKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLL 58
           MAS+SS + +LPVS     DE   EKERL+KGDEK FRGS+MT+RGA AAISYM+CAVLL
Sbjct: 1   MASSSSSNSILPVSVSPLDDERQREKERLIKGDEKAFRGSSMTKRGAYAAISYMSCAVLL 60

Query: 59  VMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPL 118
           V+FNKAALSSYNFP ANVITL QMI SCSFLY LRRW+II+FT G SL TSD ++TFVPL
Sbjct: 61  VLFNKAALSSYNFPSANVITLFQMICSCSFLYALRRWRIISFTDGGSLTTSDVNATFVPL 120

Query: 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVV 178
           +TLMHTLPLA+ YLLYM+V++ESVRGVNVPMYTTLRRTTV FTMIMEY LAGQ+YT P+ 
Sbjct: 121 ETLMHTLPLALTYLLYMLVTMESVRGVNVPMYTTLRRTTVVFTMIMEYILAGQRYTRPIF 180

Query: 179 GSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIG-KSSGLNSFGLMWC 237
           GSVGLI+LGAF+AGARDLSFDF+GYAVVF AN TTAIYLATI+RIG KSSGLNSFGLMWC
Sbjct: 181 GSVGLIVLGAFIAGARDLSFDFYGYAVVFAANFTTAIYLATISRIGRKSSGLNSFGLMWC 240

Query: 238 NGVICGPLLLLWTFLRGDLETTINFPYLLSPGFL-VVLCFSCILAFFLNYSIFLNTTLNS 296
           NG+ICGP+LL WTF+RGDL  T+NFPYL S GFL  VL  SCILAFFLNYSIFLNTTLNS
Sbjct: 241 NGIICGPVLLFWTFIRGDLGMTMNFPYLFSLGFLQAVLLLSCILAFFLNYSIFLNTTLNS 300

Query: 297 AVTQTICGNLKVCFPTTLHIAI 318
           A+TQTICGNLK  F   L   I
Sbjct: 301 ALTQTICGNLKDLFTIALGWTI 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437148|ref|XP_004136354.1| PREDICTED: UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter-like [Cucumis sativus] gi|449520181|ref|XP_004167112.1| PREDICTED: UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter-like [Cucumis sativus]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/311 (76%), Positives = 274/311 (88%), Gaps = 6/311 (1%)

Query: 3   SNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFN 62
           SNS K+ MLPVS+P  G E EKERL++GDEKLFRGS+MT+RGA AA+SYMACAVLLV+FN
Sbjct: 6   SNSEKNLMLPVSDPPHGTE-EKERLIRGDEKLFRGSSMTKRGAYAALSYMACAVLLVLFN 64

Query: 63  KAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122
           KAALSSYNFP ANV+TL+QM+ SCSFLY LRRWKII+FT+GDS   SD++++ VP+KTL 
Sbjct: 65  KAALSSYNFPSANVVTLVQMVCSCSFLYALRRWKIISFTVGDSF--SDNATSMVPMKTLR 122

Query: 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVG 182
            T PLA  YLLYM+ ++ESVRGVNVPMYTTLRRTTV FTM++EY LAGQKYT  VVGSVG
Sbjct: 123 QTSPLAGTYLLYMLATMESVRGVNVPMYTTLRRTTVVFTMVVEYLLAGQKYTYSVVGSVG 182

Query: 183 LIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVIC 242
           LI+LGAF+AGARDLSFD +GY++VF++NITTAIYLATI+RIGKSSGLNSFGLMWCNGV+C
Sbjct: 183 LIVLGAFIAGARDLSFDVYGYSIVFMSNITTAIYLATISRIGKSSGLNSFGLMWCNGVLC 242

Query: 243 GPLLLLWTFLRGDLETTINFPYLLSPGFL---VVLCFSCILAFFLNYSIFLNTTLNSAVT 299
            P+LL WTF+RGDLE TI+FP+L SPGFL   VV+  SC LAFFLNYSIFLNTTLNSAVT
Sbjct: 243 APVLLFWTFIRGDLEATISFPHLFSPGFLVSRVVMFCSCTLAFFLNYSIFLNTTLNSAVT 302

Query: 300 QTICGNLKVCF 310
           QTICGNLK  F
Sbjct: 303 QTICGNLKDLF 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430308|ref|XP_002285174.1| PREDICTED: UDP-sugar transporter UST74c [Vitis vinifera]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/309 (75%), Positives = 268/309 (86%), Gaps = 11/309 (3%)

Query: 2   ASNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMF 61
           +SNSSKSPMLP+S+P R D+           K+F+GSAM++RGA AAISYM+CAVLLV+F
Sbjct: 3   SSNSSKSPMLPISDPPRPDD-----------KVFKGSAMSKRGAYAAISYMSCAVLLVIF 51

Query: 62  NKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121
           NKAALSSY+FPCA+VITL Q+I SCSFLY LRRWKII+FT+G+S   +D S  FVP+ TL
Sbjct: 52  NKAALSSYHFPCASVITLFQIICSCSFLYALRRWKIISFTLGESSNVNDGSPVFVPITTL 111

Query: 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSV 181
           +HTLPLA+ YLLYM+V++ESVRGVNVPMYTTLRRTTV FTM +EY LAGQ+YT  VVGSV
Sbjct: 112 IHTLPLAITYLLYMLVTMESVRGVNVPMYTTLRRTTVVFTMFVEYILAGQRYTSSVVGSV 171

Query: 182 GLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVI 241
           GLI+LGAF+AGARDLSFD +GYAVVFL+NITTAIYLATIARIGKSSGLNSFGLMWCNG++
Sbjct: 172 GLIVLGAFIAGARDLSFDSYGYAVVFLSNITTAIYLATIARIGKSSGLNSFGLMWCNGIL 231

Query: 242 CGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQT 301
           CGP+LLLWTF+RGDL   +NFP+   PGFLVVL  SCILAFFLNYSIFLNTTLNSAVTQT
Sbjct: 232 CGPILLLWTFIRGDLGMAMNFPHFFLPGFLVVLLLSCILAFFLNYSIFLNTTLNSAVTQT 291

Query: 302 ICGNLKVCF 310
           ICGNLK  F
Sbjct: 292 ICGNLKDLF 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807086|ref|NP_001242077.1| uncharacterized protein LOC100819763 [Glycine max] gi|255641342|gb|ACU20948.1| unknown [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/308 (74%), Positives = 267/308 (86%), Gaps = 8/308 (2%)

Query: 3   SNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFN 62
           SNSS++ MLPVS+P +  +         D+KLF+GSAMT+RGA AA+SYM+CAVLLVMFN
Sbjct: 6   SNSSENLMLPVSDPPKSHDA--------DDKLFKGSAMTKRGAFAAVSYMSCAVLLVMFN 57

Query: 63  KAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122
           KAALSSYNFP ANVITLLQM+ S  FLY LRRW++I+F+ G+SL  SD+S+ FV LKTL 
Sbjct: 58  KAALSSYNFPSANVITLLQMVCSRCFLYLLRRWRMISFSTGESLHISDNSTKFVSLKTLK 117

Query: 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVG 182
           HTLPL+ AYL YM+V++ESVRGVNVPMYTTLRRTTV FTM++E+ L GQ+YTP V+ SVG
Sbjct: 118 HTLPLSGAYLFYMLVTMESVRGVNVPMYTTLRRTTVVFTMLVEFVLVGQRYTPSVIFSVG 177

Query: 183 LIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVIC 242
           LI+ GAFVAGARDLSFD +GYAVVF++NI TAIYLATIARIGK+SGLNSFGLMWCNG+IC
Sbjct: 178 LIVFGAFVAGARDLSFDAYGYAVVFMSNIATAIYLATIARIGKTSGLNSFGLMWCNGIIC 237

Query: 243 GPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTI 302
           GP+LL+WTF+RGDL TTINFPYL SPGF+V+L FSC+LAFFLNY IFLNTTLNSAVTQTI
Sbjct: 238 GPVLLIWTFVRGDLMTTINFPYLFSPGFIVILLFSCVLAFFLNYCIFLNTTLNSAVTQTI 297

Query: 303 CGNLKVCF 310
           CGNLK  F
Sbjct: 298 CGNLKDLF 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436995|ref|XP_003588773.1| UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter [Medicago truncatula] gi|355477821|gb|AES59024.1| UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter [Medicago truncatula]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/310 (74%), Positives = 268/310 (86%), Gaps = 11/310 (3%)

Query: 3   SNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFN 62
           SNSS+ PMLP+S+P +            D+KLF+GSAMT+RGA AAISYM+CAVLLVMFN
Sbjct: 6   SNSSEKPMLPLSDPPKNQI---------DDKLFKGSAMTKRGAYAAISYMSCAVLLVMFN 56

Query: 63  KAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122
           KAALSSYNFP ANVITLLQM+SSC FLY LRRW+II+FT  +SL+ SD+S+ FV LKTL 
Sbjct: 57  KAALSSYNFPSANVITLLQMVSSCFFLYILRRWRIISFTASESLLISDNSTKFVSLKTLK 116

Query: 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVG 182
           HT PLA AYLLYM+V++E+VRGVNVPMYTTLRRTTV FTM++E+ L GQ+YT  VV SVG
Sbjct: 117 HTFPLAGAYLLYMLVTMEAVRGVNVPMYTTLRRTTVVFTMLVEFVLVGQRYTHSVVFSVG 176

Query: 183 LIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVIC 242
           LI+ GAFVAGARDLSFD +GY+VVFLAN+TTAIYLATIARIGK+SGLNSFGLMWCNG++C
Sbjct: 177 LIVFGAFVAGARDLSFDTYGYSVVFLANVTTAIYLATIARIGKTSGLNSFGLMWCNGILC 236

Query: 243 GPLLLLWTFLRGDLETTINFPYLLSPGFLV--VLCFSCILAFFLNYSIFLNTTLNSAVTQ 300
           GP+LL+WTF+RGDL+TTI+FPYL SPGFLV   + F CILAFFLNYSIFLNTTLNSA+TQ
Sbjct: 237 GPVLLIWTFIRGDLKTTIDFPYLFSPGFLVCYFVFFLCILAFFLNYSIFLNTTLNSALTQ 296

Query: 301 TICGNLKVCF 310
           TICGN+K  F
Sbjct: 297 TICGNMKDLF 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552517|ref|XP_003544613.1| PREDICTED: UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-like [Glycine max]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/308 (73%), Positives = 265/308 (86%), Gaps = 8/308 (2%)

Query: 3   SNSSKSPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFN 62
           SNSS++ MLPVS+P +  +         D KLF+GSAMT+RGA AA+SYM+CAVLLVMFN
Sbjct: 6   SNSSENLMLPVSDPPKTQDA--------DNKLFKGSAMTKRGAFAAVSYMSCAVLLVMFN 57

Query: 63  KAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122
           KAALSSYNFP ANVITLLQM+ SC FLY LR W++I+F+ G+ L  S++SS FV LKTL 
Sbjct: 58  KAALSSYNFPSANVITLLQMVCSCCFLYLLRCWRMISFSTGEPLHISENSSKFVSLKTLK 117

Query: 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVG 182
           HTLPL+ AYL YM+V++ESVRGVNVPMYTTLRRTTV FTM++E+ L GQ+YTP V+ SVG
Sbjct: 118 HTLPLSGAYLFYMLVTMESVRGVNVPMYTTLRRTTVVFTMLVEFVLVGQRYTPSVIFSVG 177

Query: 183 LIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVIC 242
           LI+ GAFVAGARDLSFD +GYAVVF++NI TAIYLATIARIGK+SGLNSFGLMWCNG+IC
Sbjct: 178 LIVFGAFVAGARDLSFDGYGYAVVFMSNIATAIYLATIARIGKTSGLNSFGLMWCNGIIC 237

Query: 243 GPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTI 302
           GP+LL+WTF+RGDL TTINFP+L SPGF+V+L FSC+LAFFLNY IFLNTTLNSAVTQTI
Sbjct: 238 GPVLLIWTFVRGDLMTTINFPHLFSPGFIVILLFSCMLAFFLNYCIFLNTTLNSAVTQTI 297

Query: 303 CGNLKVCF 310
           CGNLK  F
Sbjct: 298 CGNLKDLF 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334197|ref|NP_001078479.1| UDP-sugar transporter-like protein [Arabidopsis thaliana] gi|332660630|gb|AEE86030.1| UDP-sugar transporter-like protein [Arabidopsis thaliana]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/309 (71%), Positives = 264/309 (85%), Gaps = 4/309 (1%)

Query: 7   KSPMLPVSEPARGDEGEKERLLKG-DEKLFRGSAMTRRGANAAISYMACAVLLVMFNKAA 65
            +P+LPVS+P    E + +   KG D++LF+GSAMT+RGA AA+SYMACAV+LV+FNKAA
Sbjct: 3   NNPVLPVSDPPLAGENDSDG--KGVDDRLFKGSAMTKRGAYAALSYMACAVMLVLFNKAA 60

Query: 66  LSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTL 125
           LSSY+FPC NVITL QM+SS  FLY LRR KII+FT  DS  + DS+STFVP+KTL HTL
Sbjct: 61  LSSYDFPCVNVITLFQMVSSSLFLYALRRRKIISFTAADSF-SIDSASTFVPVKTLFHTL 119

Query: 126 PLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLII 185
           PLA+AYLLYM+ S+ SVRGVNVPMYTTLRRTTVAFTM++EY L GQ+YT  ++GSVG+I+
Sbjct: 120 PLAIAYLLYMLASMASVRGVNVPMYTTLRRTTVAFTMVIEYMLTGQRYTRSIIGSVGIIL 179

Query: 186 LGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPL 245
           LGAF AGARDLSFDF+GY VVFLANI+TA+YLATIAR GKSSGLNSFGLMW NG+ICGP+
Sbjct: 180 LGAFFAGARDLSFDFYGYGVVFLANISTAVYLATIARTGKSSGLNSFGLMWSNGIICGPI 239

Query: 246 LLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGN 305
           L++WTF+ GDLE TINFP+LL+PGF+VVL  SC+LAF LNY IFLNTTLNSA+TQTICGN
Sbjct: 240 LMIWTFICGDLEKTINFPHLLTPGFMVVLLCSCVLAFVLNYCIFLNTTLNSALTQTICGN 299

Query: 306 LKVCFPTTL 314
           +K  F   L
Sbjct: 300 MKDLFTVGL 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798730|ref|XP_002867249.1| hypothetical protein ARALYDRAFT_491505 [Arabidopsis lyrata subsp. lyrata] gi|297313085|gb|EFH43508.1| hypothetical protein ARALYDRAFT_491505 [Arabidopsis lyrata subsp. lyrata]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 261/307 (85%), Gaps = 7/307 (2%)

Query: 8   SPMLPVSEPARGDEGEKERLLKGDEKLFRGSAMTRRGANAAISYMACAVLLVMFNKAALS 67
           +P+LPVS+P    E +       D++LF+GSAMT+RGA AA+SYMACAV+LV+FNKAALS
Sbjct: 7   NPVLPVSDPPLAGENDV------DDRLFKGSAMTKRGAYAALSYMACAVMLVLFNKAALS 60

Query: 68  SYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPL 127
           SY+FPC NVITL QM+SS  FLY LRR KII+FT  DS  + D++S FVP+KTL HTLPL
Sbjct: 61  SYDFPCVNVITLFQMVSSSLFLYALRRRKIISFTAADSF-SIDNASNFVPVKTLFHTLPL 119

Query: 128 AVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILG 187
           ++AYL+YM+ S+ SVRGVNVPMYTTLRRTTVAFTM++EY L GQ+YT  ++GSVG+I+LG
Sbjct: 120 SIAYLMYMLASMASVRGVNVPMYTTLRRTTVAFTMVIEYMLTGQRYTRSIIGSVGVILLG 179

Query: 188 AFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLL 247
           AF AGARDLSFDF+GY VVFLANI+TA+YLATIAR GKSSGLNSFGLMW NG+ICGP+L+
Sbjct: 180 AFFAGARDLSFDFYGYGVVFLANISTAVYLATIARTGKSSGLNSFGLMWSNGIICGPILM 239

Query: 248 LWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLK 307
           +WTF+ GDLE TINFP+LLSPGF+VVL  SC+LAFFLNY IFLNTTLNSA+TQTICGN+K
Sbjct: 240 IWTFICGDLEKTINFPHLLSPGFMVVLLCSCVLAFFLNYCIFLNTTLNSALTQTICGNMK 299

Query: 308 VCFPTTL 314
             F   L
Sbjct: 300 DLFTVGL 306

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187081|ref|NP_001190887.1| UDP-sugar transporter-like protein [Arabidopsis thaliana] gi|332660631|gb|AEE86031.1| UDP-sugar transporter-like protein [Arabidopsis thaliana]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/324 (68%), Positives = 264/324 (81%), Gaps = 19/324 (5%)

Query: 7   KSPMLPVSEPARGDEGEKERLLKG-DEKLFRGSAMTRRGANAAISYMACAVL-------- 57
            +P+LPVS+P    E + +   KG D++LF+GSAMT+RGA AA+SYMACAVL        
Sbjct: 3   NNPVLPVSDPPLAGENDSDG--KGVDDRLFKGSAMTKRGAYAALSYMACAVLVFSRIRFS 60

Query: 58  -------LVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSD 110
                  LV+FNKAALSSY+FPC NVITL QM+SS  FLY LRR KII+FT  DS  + D
Sbjct: 61  GFRSSFMLVLFNKAALSSYDFPCVNVITLFQMVSSSLFLYALRRRKIISFTAADSF-SID 119

Query: 111 SSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAG 170
           S+STFVP+KTL HTLPLA+AYLLYM+ S+ SVRGVNVPMYTTLRRTTVAFTM++EY L G
Sbjct: 120 SASTFVPVKTLFHTLPLAIAYLLYMLASMASVRGVNVPMYTTLRRTTVAFTMVIEYMLTG 179

Query: 171 QKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLN 230
           Q+YT  ++GSVG+I+LGAF AGARDLSFDF+GY VVFLANI+TA+YLATIAR GKSSGLN
Sbjct: 180 QRYTRSIIGSVGIILLGAFFAGARDLSFDFYGYGVVFLANISTAVYLATIARTGKSSGLN 239

Query: 231 SFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFL 290
           SFGLMW NG+ICGP+L++WTF+ GDLE TINFP+LL+PGF+VVL  SC+LAF LNY IFL
Sbjct: 240 SFGLMWSNGIICGPILMIWTFICGDLEKTINFPHLLTPGFMVVLLCSCVLAFVLNYCIFL 299

Query: 291 NTTLNSAVTQTICGNLKVCFPTTL 314
           NTTLNSA+TQTICGN+K  F   L
Sbjct: 300 NTTLNSALTQTICGNMKDLFTVGL 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
WB|WBGene00005025	329	sqv-7 [Caenorhabditis elegans	0.762	0.762	0.348	7.9e-30
UNIPROTKB|F1PQY1	349	SLC35D2 "Uncharacterized prote	0.750	0.707	0.319	8.2e-28
DICTYBASE|DDB_G0276625	314	DDB_G0276625 "TPT transporter	0.778	0.815	0.324	4.5e-27
ZFIN|ZDB-GENE-040826-5	336	slc35d1a "solute carrier famil	0.753	0.738	0.326	7.3e-27
DICTYBASE|DDB_G0278631	382	DDB_G0278631 "DUF250 family pr	0.744	0.641	0.272	1.2e-26
ZFIN|ZDB-GENE-080125-1	299	slc35d2 "solute carrier family	0.747	0.822	0.307	1.5e-26
UNIPROTKB|E1BM02	338	SLC35D2 "UDP-N-acetylglucosami	0.750	0.730	0.316	3.2e-26
MGI|MGI:1917734	326	Slc35d2 "solute carrier family	0.750	0.757	0.301	3.2e-26
ZFIN|ZDB-GENE-040426-1213	363	slc35d1b "solute carrier famil	0.750	0.680	0.316	3.2e-26
UNIPROTKB|Q9NTN3	355	SLC35D1 "UDP-glucuronic acid/U	0.838	0.777	0.295	4e-26

WB|WBGene00005025 sqv-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 94/270 (34%), Positives = 144/270 (53%)

Query:    47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
             +A+ Y   +VL+V  NK  L++Y FP    + + QM+++   L+F + ++I+ F    SL
Sbjct:    15 SAVFYGVISVLIVFVNKILLTNYKFPSFLFVGVGQMMATILILFFAKMFRIVQFP---SL 71

Query:   107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEY 166
                DSS   +P K +    PL + Y   +            PM+T LRR ++  TMI+E+
Sbjct:    72 ---DSS---IPRKIM----PLPLLYFFNLISGLGGTQMINLPMFTVLRRFSILMTMILEF 121

Query:   167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANI-TTAIYLATIARIGK 225
             ++   K +  V  SVGL+I G+F+A   DLSFD  GY ++F+ NI T A+ + T  ++  
Sbjct:   122 YILNVKASKAVKISVGLMIGGSFIAAIYDLSFDALGYTMIFINNICTAALGVYTKQKLD- 180

Query:   226 SSGLNSFGLMWCNGV-ICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCF--SCILAF 282
             +  L  +GLM+ N + +  P L +  +  GDL+   +F    S    V  CF  SCI  F
Sbjct:   181 AKDLGKYGLMFYNCLFMLLPALCVVQYT-GDLDRAYSFMLSDSMTSSVWTCFLLSCICGF 239

Query:   283 FLNYSIFLNTTLNSAVTQTICGNLKVCFPT 312
              LNYS+ L T  NSA+T T  G +K  F T
Sbjct:   240 VLNYSLVLCTHHNSALTTTCVGPIKNLFVT 269

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1PQY1 SLC35D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 84/263 (31%), Positives = 135/263 (51%)

Query:    47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
             +A+ Y AC+ L+V+ NKA L++Y FP    + + QM ++   LY  +  KII+F   D  
Sbjct:    40 SALFYGACSFLIVLVNKALLTAYGFPSPIFLGIGQMAATIMILYVSKLNKIIHFPDFDKK 99

Query:   107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEY 166
                      +P+K L    PL + Y+               PM+T LR+ T+  T+++E 
Sbjct:   100 ---------IPVKKLF---PLPLLYIGNHISGLSSTSKLSLPMFTVLRKFTIPLTLLLET 147

Query:   167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIY-LATIARIGK 225
              + G++Y+  ++ SV  IILGAF+A   DL+F   GY  VFL +I TA   + T  ++G 
Sbjct:   148 IILGKQYSLNIIASVFTIILGAFIAAGSDLAFYLEGYIFVFLNDIFTAANGVYTKQKMGP 207

Query:   226 SSGLNSFGLMWCNGV-ICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFL 284
                L  +G+++ N   +  P L++ +   GDL     F    +  F++    SC L F L
Sbjct:   208 KE-LGKYGVLFYNACFMIIPTLII-SVSTGDLRQATEFNEWKNVLFIIQFLLSCFLGFLL 265

Query:   285 NYSIFLNTTLNSAVTQTICGNLK 307
              YS+ L +  NSA+T  + G +K
Sbjct:   266 MYSMVLCSYYNSALTTAVVGAIK 288

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0276625 DDB_G0276625 "TPT transporter family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 89/274 (32%), Positives = 137/274 (50%)

Query:    43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTM 102
             +G   A++Y   +V +  FNKA L+ Y F  +N +TL QMI S  FL  ++ +  I++  
Sbjct:    12 KGFFVAVAYGVTSVSITFFNKAVLNYYGFNFSNSLTLGQMIFSLFFLVTMKTFGYISYP- 70

Query:   103 GDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTM 162
                    D +     L        L++ ++L +            P+++ LRR +    +
Sbjct:    71 -------DFN-----LDLCKKLASLSLLFILMVISGLAALAKTNVPLFSALRRLSTLIVI 118

Query:   163 IMEYFLAGQKYTPP-VVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIA 221
             + E FL G K TP   V SV +++LGA +AG  D +FDF G   +      TA YL  IA
Sbjct:   119 VGEGFLLG-KVTPTDEVQSVVVMVLGALIAGLGDATFDFVGSIYILFNCFVTAGYLIYIA 177

Query:   222 RIGKSSGLNSFGLM-WCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCIL 280
             +  K + LN+FGLM +CN ++  P  ++ TF+  + E    F    + GF      S I 
Sbjct:   178 KKTKETQLNTFGLMFYCN-ILSLPATIILTFIT-EWEGISTFEGYGNIGFQFCFFMSSIQ 235

Query:   281 AFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTL 314
             AF LNY IFL +T+NS +T +I G +K    T +
Sbjct:   236 AFLLNYFIFLCSTMNSPLTTSITGQIKSILQTII 269

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040826-5 slc35d1a "solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1a" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 86/263 (32%), Positives = 135/263 (51%)

Query:    46 NAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDS 105
             +AA  Y   + L+V+ NK+ L++Y FP +  + + QM+++   L   +  ++I F     
Sbjct:    25 SAAGFYGISSFLIVVVNKSVLTNYRFPSSICVGIGQMLATVVVLRVGKALRVITFP---- 80

Query:   106 LMTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIME 165
                 D S   +P KT     PL + Y+               PM+T LRR ++ FTM+ E
Sbjct:    81 --EFDGS---IPRKTF----PLPLLYVGNQITGLFGTKRLNLPMFTVLRRFSILFTMLAE 131

Query:   166 YFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGK 225
              FL  +K++ PV  +V  +ILGAFVA + DL+FD  GY  + + ++ TA   A + +   
Sbjct:   132 GFLLKKKFSRPVQLTVFTMILGAFVAASADLAFDLQGYVFILMNDVLTAANGAFVKQKLD 191

Query:   226 SSGLNSFGLMWCNGV-ICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFL 284
             S  L  +GL++ N + +  P LLL   + GD++   ++       F+     SCI+ F L
Sbjct:   192 SKELGKYGLLYYNALFMILPTLLL-AHVTGDMDKAFDYDGWSDVLFISQFFLSCIMGFIL 250

Query:   285 NYSIFLNTTLNSAVTQTICGNLK 307
              YS  L T  NSA+T TI G LK
Sbjct:   251 MYSTVLCTQYNSALTTTIVGCLK 273

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0278631 DDB_G0278631 "DUF250 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 71/261 (27%), Positives = 135/261 (51%)

Query:    66 LSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTL 125
             +++Y+F  +N +   QM+ +   L+ L+ + I+         T+    T   +K LM   
Sbjct:   112 MTTYDFSASNFLLFNQMVVTIVILHILKHFNILKIN------TNFEKET---IKKLM--- 159

Query:   126 PLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEYFLAGQKYTPP-VVGSVGLI 184
             PL+  Y++ +            PMY+ L+R      ++MEYF+  +K +PP ++ SV ++
Sbjct:   160 PLSFCYIINVLLGLDSLKQLNIPMYSALKRLVAVVILVMEYFIL-KKVSPPKIIASVVVM 218

Query:   185 ILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGP 244
             ++GA VAG  DLSF+  GY++V L+ I  A YL  + ++  +S ++++ +++ N V+  P
Sbjct:   219 VIGAVVAGITDLSFNSLGYSLVLLSCIFQASYLIYVKKV--ASNMSTYDMLYYNSVLSLP 276

Query:   245 LLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICG 304
             + +    +  ++E    F +L    F      S  L FFLN+ IF  T++NS +T ++ G
Sbjct:   277 ITIFLMIVNQEIEYFQTFEHLYDSSFQAYFILSIFLGFFLNFCIFFCTSVNSPLTTSVTG 336

Query:   305 NLKVCFPTTLHIAIATNFGLH 325
              +K    T +   +  +  +H
Sbjct:   337 QVKNIASTIIGAMVFNDIIIH 357

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-080125-1 slc35d2 "solute carrier family 35, member D2" [Danio rerio (taxid:7955)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 81/263 (30%), Positives = 132/263 (50%)

Query:    47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
             +A  Y  C+ L+++ NK+ L+ Y FP    + + QM ++   LY  +  K I+F      
Sbjct:     9 SATFYAFCSFLIIVINKSILTEYKFPSFMFLGIGQMAATIIILYAAKMNKTIHF------ 62

Query:   107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEY 166
                D   + V         PL + Y+               PM+T LR+ T+  TMIME 
Sbjct:    63 --QDFDRSIVG-----KIFPLPLLYVGNHVTGLGGTKKLSLPMFTVLRKFTILLTMIMES 115

Query:   167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIY-LATIARIGK 225
              +  + + PP+V SV  I+LGA +A + DLSF+  GY  V + ++ TA   + T  ++G 
Sbjct:   116 RILKKSFAPPLVCSVLAIVLGALIAASSDLSFNAEGYTFVLMNDVFTAASGVYTKKKLGM 175

Query:   226 SSGLNSFGLMWCNG-VICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFL 284
               GL  +G+++ N  +I  P +L   +  GDL+  + +   LS  F+     SC++ F L
Sbjct:   176 E-GLGKYGVLFYNAFIIIIPTVLASAYT-GDLQKALTYEGWLSFTFIFYFLLSCVMGFIL 233

Query:   285 NYSIFLNTTLNSAVTQTICGNLK 307
              YSI L +  N+A+T T+ G +K
Sbjct:   234 MYSIILCSYYNTALTTTVVGAIK 256

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BM02 SLC35D2 "UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter" [Bos taurus (taxid:9913)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 83/262 (31%), Positives = 128/262 (48%)

Query:    47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
             +A+ Y  C+ LLV+ NKA L++Y FP   V+ + QM  +   LY  +  KII+F   D  
Sbjct:    30 SALFYGTCSFLLVLINKALLTTYRFPSPIVLGVGQMAVTIMILYVSKLNKIIHFPDFDKK 89

Query:   107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEY 166
                      +P K      PL + Y+               PM+T LR+ T+  T+++E 
Sbjct:    90 ---------IPTKLF----PLPLLYVGNHISGLASTSKLSLPMFTVLRKFTIPLTLLLET 136

Query:   167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKS 226
              + G++Y+  ++ SV  IILGAFVA   DL+F+  GY  VFL +I TA       +    
Sbjct:   137 IILGKQYSLNIIVSVFAIILGAFVAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDP 196

Query:   227 SGLNSFGLMWCNGV-ICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLN 285
               L  +G+++ N   +  P L++ +   GDL     F    +  F++    SC L F L 
Sbjct:   197 KELGKYGVLFYNACFMIIPTLII-SVSTGDLRQATEFNQWKNVLFIIQFLLSCFLGFLLM 255

Query:   286 YSIFLNTTLNSAVTQTICGNLK 307
             YS  L +  NSA+T  + G +K
Sbjct:   256 YSTVLCSYYNSALTTAVVGAIK 277

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1917734 Slc35d2 "solute carrier family 35, member D2" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 79/262 (30%), Positives = 131/262 (50%)

Query:    47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
             +A+ Y  C+ L+V+ NKA L++Y FP   V+ + QM ++   LY  +  KII+F   D  
Sbjct:    18 SALFYGTCSFLIVLVNKALLTTYGFPSPIVLGIGQMATTIMILYVFKLNKIIHFPDFDKK 77

Query:   107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEY 166
                      +P K      PL + Y+               PM+T LR+ T+ FT+++E 
Sbjct:    78 ---------IPGKLF----PLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPFTLLLEA 124

Query:   167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKS 226
              + G +Y+  ++ SV  I+LGAF+A   DL+F+  GY  VFL +I TA       +    
Sbjct:   125 IILGTQYSLNIILSVLAIVLGAFIAAGSDLTFNLEGYVFVFLNDIFTAANGVYTKQKMDP 184

Query:   227 SGLNSFGLMWCNGV-ICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLN 285
               L  +G+++ N   +  P +++ +   GD +    F +  +  F++    SC+L F L 
Sbjct:   185 KELGKYGVLFYNACFMLIPTVII-SVSTGDFQQATEFRHWKNVLFIIQFLLSCLLGFLLM 243

Query:   286 YSIFLNTTLNSAVTQTICGNLK 307
             YS  L +  NSA+T  + G +K
Sbjct:   244 YSTALCSYYNSALTTAVVGAIK 265

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-1213 slc35d1b "solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1b" [Danio rerio (taxid:7955)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 83/262 (31%), Positives = 133/262 (50%)

Query:    47 AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
             AA  Y   + L+V+ NK+ L++Y FP +  + + QM ++   +  LR  K +N      +
Sbjct:    37 AAAFYGISSFLIVVVNKSVLTNYRFPSSLALGIGQMFAT---VVVLRGAKALN------M 87

Query:   107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEY 166
             ++       V  K      PL + Y+               PM+T LRR ++ FTM+ E 
Sbjct:    88 ISFPDFDWHVAYKVF----PLPLLYVGNQLTGLFGTKQLNLPMFTVLRRFSILFTMLFEG 143

Query:   167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLATIARIGKS 226
             +L  QK++  +  +V  +ILGAFVA + DL+FD  GY  + L NI TA   A + +   S
Sbjct:   144 YLLKQKFSWSIKATVFTMILGAFVAASSDLAFDLQGYVFITLNNILTAANGAYMKQKLDS 203

Query:   227 SGLNSFGLMWCNGVICG-PLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLN 285
               L  +GL++ N ++   P ++L  +  GD++ T+         F++    SC++ F L 
Sbjct:   204 KELGKYGLLYYNALLMIIPTVVL-AYFTGDVQKTLECEVWADYFFVIQFVLSCVMGFILM 262

Query:   286 YSIFLNTTLNSAVTQTICGNLK 307
             YSI L T  NSA+T TI G +K
Sbjct:   263 YSIMLCTHYNSALTTTIVGCIK 284

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NTN3 SLC35D1 "UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 87/294 (29%), Positives = 144/294 (48%)

Query:    18 RGDEGEKERLLKGDEKLFRGSAMTRR---GANAAISYMACAVLLVMFNKAALSSYNFPCA 74
             +G+   K   L+ +E+L   SA T        AA  Y   + L+V+ NK+ L++Y FP +
Sbjct:    13 KGEAPAKSSTLRDEEELGMASAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPSS 72

Query:    75 NVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLY 134
               + L QM+++ + L+  +  +++ F         D +   VP KT     PL + Y   
Sbjct:    73 LCVGLGQMVATVAVLWVGKALRVVKFP------DLDRN---VPRKTF----PLPLLYFGN 119

Query:   135 MXXXXXXXXXXXXPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194
                          PM+T LRR ++ FTM  E  L  + ++  +  +V  +I+GAFVA + 
Sbjct:   120 QITGLFSTKKLNLPMFTVLRRFSILFTMFAEGVLLKKTFSWGIKMTVFAMIIGAFVAASS 179

Query:   195 DLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGV-ICGPLLLLWTFLR 253
             DL+FD  GYA + + ++ TA   A + +   S  L  +GL++ N + +  P L +  +  
Sbjct:   180 DLAFDLEGYAFILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAI-AYFT 238

Query:   254 GDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLK 307
             GD +  + F       FL+    SC++ F L Y+  L T  NSA+T TI G +K
Sbjct:   239 GDAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIK 292

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IEA

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=NAS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=NAS

GO:0005463 "UDP-N-acetylgalactosamine transmembrane transporter activity" evidence=NAS

GO:0015789 "UDP-N-acetylgalactosamine transport" evidence=NAS

GO:0005461 "UDP-glucuronic acid transmembrane transporter activity" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006065 "UDP-glucuronate biosynthetic process" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0015787 "UDP-glucuronic acid transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032667001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (340 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
COG5070	309	COG5070, VRG4, Nucleotide-sugar transporter [Carbo	6e-09
pfam08449	303	pfam08449, UAA, UAA transporter family	3e-05
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	0.002

>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score = 56.0 bits (135), Expect = 6e-09
 Identities = 55/267 (20%), Positives = 115/267 (43%), Gaps = 24/267 (8%)

Query: 47  AAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSL 106
           A++SY   ++L+ + NK  LS+  F    ++  +Q +     L  L+  +++ F +  + 
Sbjct: 10  ASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKA- 68

Query: 107 MTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEY 166
                              P++   ++ +  S +S++ + VP+YT  +  T+      E 
Sbjct: 69  ---------------KKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEV 113

Query: 167 FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF-------GYAVVFLANITTAIYLAT 219
              G + T   + S  L++L + VA   D     F       GY  +F   +++A ++  
Sbjct: 114 LFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLI 173

Query: 220 IARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCI 279
           + +  K +    F  M+ N ++  P+LL ++FL  D  +  N    LS   L+ +  S +
Sbjct: 174 MRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFED-WSPGNLANNLSVDSLMAMFISGL 232

Query: 280 LAFFLNYSIFLNTTLNSAVTQTICGNL 306
            +  ++Y       + S+ T ++ G L
Sbjct: 233 CSVGISYCSAWCVRVTSSTTYSMVGAL 259

Length = 309

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 40/198 (20%), Positives = 84/198 (42%), Gaps = 14/198 (7%)

Query: 116 VPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTP 175
           +PLKT +    +   + L  V++ E+++ ++ P +   +   +   MI+   + G++Y+ 
Sbjct: 62  IPLKTYVL---IVATFFLSSVLNNEALKYISYPTHVIFKSCKLIPVMILGILIYGKRYSS 118

Query: 176 PVVGSVGLIILGAFVA---------GARDLSF-DFFGYAVVFLANITTAIYLATIARIGK 225
               S  LI LG  +           ++  +F D  G A++F A +  A+   T  ++ K
Sbjct: 119 LQYLSALLITLGVIIFTLASAKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYK 178

Query: 226 SSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLS-PGFLVVLCFSCILAFFL 284
             G +S  +M+ + ++  P  LL               + L  P  L  L  + +  +  
Sbjct: 179 KYGKHSKEMMFYSHLLSLPFFLLGLLDIRTGLLFSAESFCLRHPSVLFYLLLNSLTQYVG 238

Query: 285 NYSIFLNTTLNSAVTQTI 302
            + +F   +   A+T T+
Sbjct: 239 QFFVFYLISEFGALTVTL 256

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 202 GYAVVFLANITTAIYLATIARI---GKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLET 258
           G+ +   A+   A+ L    ++    K + LN   L++    +   +LL         + 
Sbjct: 1   GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKL 60

Query: 259 TINFPY----LLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCF 310
                     L +  ++++L  S +LAF  N S F      S +T ++ G +K   
Sbjct: 61  GKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVV 116

This family includes transporters with a specificity for triose phosphate. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	100.0
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	100.0
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	100.0
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	100.0
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	100.0
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.96
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.96
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.95
KOG1581	327	consensus UDP-galactose transporter related protei	99.9
KOG1580	337	consensus UDP-galactose transporter related protei	99.89
KOG1582	367	consensus UDP-galactose transporter related protei	99.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.85
PLN00411	358	nodulin MtN21 family protein; Provisional	99.84
PRK11272	292	putative DMT superfamily transporter inner membran	99.83
PRK11689	295	aromatic amino acid exporter; Provisional	99.83
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.81
PRK15430	296	putative chloramphenical resistance permease RarD;	99.81
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.8
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.77
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.77
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.72
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.71
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.65
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.62
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.56
KOG2765	416	consensus Predicted membrane protein [Function unk	99.54
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.54
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.52
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.52
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.51
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.35
COG2962	293	RarD Predicted permeases [General function predict	99.34
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.0
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.77
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.76
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.73
KOG2766	336	consensus Predicted membrane protein [Function unk	98.56
COG2510	140	Predicted membrane protein [Function unknown]	98.53
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.43
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.37
COG2510	140	Predicted membrane protein [Function unknown]	98.25
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.03
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.01
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.96
PRK15430	296	putative chloramphenical resistance permease RarD;	97.88
PLN00411	358	nodulin MtN21 family protein; Provisional	97.88
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.81
PRK11272	292	putative DMT superfamily transporter inner membran	97.77
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.71
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.64
PRK11689	295	aromatic amino acid exporter; Provisional	97.6
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.58
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.44
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.41
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.38
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.23
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.18
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.03
PRK11431	105	multidrug efflux system protein; Provisional	96.97
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.97
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.93
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.92
COG2076	106	EmrE Membrane transporters of cations and cationic	96.9
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.88
COG2962	293	RarD Predicted permeases [General function predict	96.73
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.7
PRK13499	345	rhamnose-proton symporter; Provisional	96.62
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.38
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.16
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.87
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.71
PF13536	113	EmrE: Multidrug resistance efflux transporter	94.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	94.31
KOG4510	346	consensus Permease of the drug/metabolite transpor	93.87
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.79
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	93.08
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	92.42
PRK13499	345	rhamnose-proton symporter; Provisional	88.93
KOG1581	327	consensus UDP-galactose transporter related protei	86.4
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	84.59
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	84.51
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	84.2
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	80.83

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-35  Score=262.16  Aligned_cols=270  Identities=31%  Similarity=0.504  Sum_probs=249.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHH
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL  121 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (329)
                      .+.+.+++.|+.+|+.+++.||++++.++||...++...|.+.+.+.++++++.|..++|+             .+++..
T Consensus        11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~-------------l~~~~~   77 (314)
T KOG1444|consen   11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRP-------------LDLRTA   77 (314)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCC-------------cChHHH
Confidence            4568899999999999999999999999888887777899999999999999999888763             467889


Q ss_pred             HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228          122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF  201 (329)
Q Consensus       122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~  201 (329)
                      |+++|+++++.++++++..+++|+|+|+++++|+.+|+++++.+..++|++++...+.++..+.+|......+|.+++..
T Consensus        78 kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~  157 (314)
T KOG1444|consen   78 KKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLR  157 (314)
T ss_pred             HHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh-hccCCccchhHHHHHHHHHHH
Q 020228          202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT-INFPYLLSPGFLVVLCFSCIL  280 (329)
Q Consensus       202 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~-~~~~~~~~~~~~~~l~~~~~~  280 (329)
                      |+.|++.+.++.+.+.++.|+..+..+.+.+++++|+++++.+.+....+.+||++.. .+++.+.++.++..+.++|++
T Consensus       158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~  237 (314)
T KOG1444|consen  158 GYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVM  237 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHH
Confidence            9999999999999999999999998899999999999999999999999999998832 244446677889999999999


Q ss_pred             HHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCccc
Q 020228          281 AFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLH  325 (329)
Q Consensus       281 ~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~~  325 (329)
                      |+..+++.++|.+.+||++.+++| .+....+.++.++++|..+|
T Consensus       238 gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~  281 (314)
T KOG1444|consen  238 GFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFT  281 (314)
T ss_pred             HHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceec
Confidence            999999999999999999999999 88888888888888776544

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=100.00  E-value=1.3e-33  Score=263.52  Aligned_cols=268  Identities=17%  Similarity=0.139  Sum_probs=222.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHH
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL  121 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (329)
                      .+....++.|+++|+..++.||+++++  +|+|++++++|++++++++.++...+..+.|+.           ...++++
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~  114 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRI-----------KSLKLFL  114 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----------CCHHHHH
Confidence            467888999999999999999999985  688999999999999887776655442221100           0124578


Q ss_pred             HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228          122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF  201 (329)
Q Consensus       122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~  201 (329)
                      +.++|.|+++.......|.|++++++++++++|++.|+++++++++++|||++++++.+++++++|+++++.+|.++++.
T Consensus       115 ~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~  194 (350)
T PTZ00343        115 KNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWL  194 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHH
Confidence            99999999998878888999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCchhHHHHHHHHHHHHHHHHHHHhCC--hhhhhc-----cCCccchh
Q 020228          202 GYAVVFLANITTAIYLATIARIGKSS-----GLNSFGLMWCNGVICGPLLLLWTFLRGD--LETTIN-----FPYLLSPG  269 (329)
Q Consensus       202 G~~~~l~s~~~~a~~~i~~~~~~~~~-----~~~~~~l~~~~~~~~~~~l~~~~~~~ge--~~~~~~-----~~~~~~~~  269 (329)
                      |++++++|++++|+|+++.|+..+++     +.++.++..++.+.+.++++|.....++  +...++     ........
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~  274 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGI  274 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHH
Confidence            99999999999999999999998754     3567777777788888888887653322  122121     01111123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          270 FLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      .+..++.++++.+..|.+.|++++++||++.++.+++|+++++++|++++||.
T Consensus       275 ~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~  327 (350)
T PTZ00343        275 IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ  327 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC
Confidence            34456778899999999999999999999999999999999999999999986

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-35  Score=264.66  Aligned_cols=266  Identities=26%  Similarity=0.344  Sum_probs=230.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      +.......|+.++++..+.||++++.++|++|++++..|..++.+...+.+.++..+.++-            .++..++
T Consensus        17 ~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~------------~~~~~~~   84 (316)
T KOG1441|consen   17 RIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKI------------SSKLPLR   84 (316)
T ss_pred             HHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcc------------ccccchH
Confidence            4466789999999999999999999889999999999999999999999888875442210            1234578


Q ss_pred             HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchhH
Q 020228          123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFG  202 (329)
Q Consensus       123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~G  202 (329)
                      .++|+|++++++..++|.|++++|++++|++|++.|+++.++++++.+|++++..++++..++.|+.+++++|.++|+.|
T Consensus        85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G  164 (316)
T KOG1441|consen   85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFG  164 (316)
T ss_pred             HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHH-HHHHH-hCChhhhhccCCccchhHHHHHHHHH
Q 020228          203 YAVVFLANITTAIYLATIARIG--KSSGLNSFGLMWCNGVICGPLLL-LWTFL-RGDLETTINFPYLLSPGFLVVLCFSC  278 (329)
Q Consensus       203 ~~~~l~s~~~~a~~~i~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~-~~~~~-~ge~~~~~~~~~~~~~~~~~~l~~~~  278 (329)
                      ++.++++.+..++++++.|+++  ++++.|+.++++|+.+.+...++ |+... +|+.. ........+..++..++.+ 
T Consensus       165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s-  242 (316)
T KOG1441|consen  165 FISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILLLNS-  242 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHHHHH-
Confidence            9999999999999999999998  56789999999999999999888 76543 34322 1101111223344444444 


Q ss_pred             HHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          279 ILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       279 ~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ++++.+|.+.|++++++||+|+++.|++|.++.++.|+++|+|+
T Consensus       243 v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~p  286 (316)
T KOG1441|consen  243 VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNP  286 (316)
T ss_pred             HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCC
Confidence            99999999999999999999999999999999999999999983

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=100.00  E-value=7.8e-32  Score=247.38  Aligned_cols=264  Identities=17%  Similarity=0.159  Sum_probs=216.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH  123 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (329)
                      ..+.++.|+.+|++.+++||+++++  |++|.+++++|++++.+.+.+..+.+..+             +.+.++++++.
T Consensus         3 ~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~   67 (302)
T TIGR00817         3 TGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPK-------------RLKISSALLKL   67 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCC-------------CCCCCHHHHHH
Confidence            3566899999999999999999984  68999999999999988877764433211             01245788999


Q ss_pred             HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchhHH
Q 020228          124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGY  203 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~G~  203 (329)
                      +++.|++++.+..++|.+++|+++++++++++++|+++++++++++|||++++++.+++++++|+++...+|.+++..|+
T Consensus        68 ~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~  147 (302)
T TIGR00817        68 LLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGF  147 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987777777888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh---hccC-Cccch-hHHHHHHHHH
Q 020228          204 AVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT---INFP-YLLSP-GFLVVLCFSC  278 (329)
Q Consensus       204 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~---~~~~-~~~~~-~~~~~l~~~~  278 (329)
                      ++++++++++|+|.++.||..++.++++.+++.|+++.+.+.+.|.....++....   +... ..... ..+...+..+
T Consensus       148 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (302)
T TIGR00817       148 LSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAA  227 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHH
Confidence            99999999999999999998876578999999999999988888877655442211   1000 00111 1232233333


Q ss_pred             H-HHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          279 I-LAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       279 ~-~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      . +....|...+.+++++||++.++.+++||+.++++|++++||.
T Consensus       228 ~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~  272 (302)
T TIGR00817       228 MGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK  272 (302)
T ss_pred             HHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC
Confidence            3 4455666778899999999999999999999999999999985

specificities overlap.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-33  Score=238.83  Aligned_cols=274  Identities=24%  Similarity=0.311  Sum_probs=247.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHHHHHHHHHc-----ccccccCCCCCccCCCCCcc
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSS--YNFPCANVITLLQMISSCSFLYFLRRW-----KIINFTMGDSLMTSDSSSTF  115 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~--~~f~~p~~l~~~q~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~  115 (329)
                      +....+..|..+|+++++.||++++.  ...+.|.+++++|.+++..++..+.+.     +..++|.           -+
T Consensus        28 ~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~-----------~~   96 (347)
T KOG1442|consen   28 QVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPS-----------LQ   96 (347)
T ss_pred             chhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCc-----------cc
Confidence            44667788999999999999999985  456889999999999998888877653     2233332           22


Q ss_pred             ccHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC
Q 020228          116 VPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD  195 (329)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~  195 (329)
                      ++.+..++++|+++.+.+++.++|.+|+|+++++|++-|+++.+|+.++.++++|+|-+.....++.++++|..+.+..|
T Consensus        97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE  176 (347)
T KOG1442|consen   97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE  176 (347)
T ss_pred             ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             ---cccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHH
Q 020228          196 ---LSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLV  272 (329)
Q Consensus       196 ---~~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~  272 (329)
                         ...++.|.++++.++++.|+..+++|+.....+..-|.+.+|++..+..+.+|...+.||.++.+++++..+..+|.
T Consensus       177 ~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~  256 (347)
T KOG1442|consen  177 GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWI  256 (347)
T ss_pred             cccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHH
Confidence               45689999999999999999999999998877778899999999999999999999999999999988877888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCccccc
Q 020228          273 VLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHTY  327 (329)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~~~~  327 (329)
                      .+.++|++||..++.+.+-+|.|||+|+.|.++.|.+...++++.+++|.+...|
T Consensus       257 ~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw  311 (347)
T KOG1442|consen  257 LMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW  311 (347)
T ss_pred             HHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe
Confidence            9999999999999999999999999999999999999999999999999876555

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.96  E-value=1.6e-29  Score=211.07  Aligned_cols=262  Identities=21%  Similarity=0.302  Sum_probs=236.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      .+..+++.|+.+|+.+++.|||+++..||+-...+.+.|.+++.+.+.+++..|..++|                ..+.|
T Consensus         6 s~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR----------------~t~aK   69 (309)
T COG5070           6 SELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR----------------LTKAK   69 (309)
T ss_pred             ccchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee----------------hhhhh
Confidence            34678899999999999999999999999999999999999999999999988876654                34578


Q ss_pred             HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc------
Q 020228          123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL------  196 (329)
Q Consensus       123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~------  196 (329)
                      +++|.+.+..++++.+..+++|.++|.|++.|+++.+.++..+..++|.+.+..+..+.+++++....++++|.      
T Consensus        70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~  149 (309)
T COG5070          70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK  149 (309)
T ss_pred             hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987      


Q ss_pred             --ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHH
Q 020228          197 --SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVL  274 (329)
Q Consensus       197 --~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l  274 (329)
                        ..| .|++|+..+++..|.+....|+..+-.+....+.+||+++++.|+++...+..+||++. +......+..+..+
T Consensus       150 ~~~lN-~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~am  227 (309)
T COG5070         150 AQILN-PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAM  227 (309)
T ss_pred             hcccC-CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHH
Confidence              345 79999999999999999999999877777889999999999999999999999988763 11122334456788


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       275 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +++|++++...+++-+|++.+|+++++.+|.+++....+.|.++||++
T Consensus       228 ~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap  275 (309)
T COG5070         228 FISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAP  275 (309)
T ss_pred             HHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCc
Confidence            999999999999999999999999999999999999999999999876

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.96  E-value=1.5e-27  Score=218.92  Aligned_cols=249  Identities=20%  Similarity=0.265  Sum_probs=211.3

Q ss_pred             HHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHH
Q 020228           58 LVMFNKAALSSYNF-PCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMV  136 (329)
Q Consensus        58 ~~~~nK~ll~~~~f-~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (329)
                      ..+..+.+...... ++|.++++.|++++.+...+.....+.+ +           +   ++..++++++.++++.++..
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-~-----------~---~~~~~~~~~~~~~~~~~~~~   79 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-K-----------S---RKIPLKKYAILSFLFFLASV   79 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-C-----------C---CcChHHHHHHHHHHHHHHHH
Confidence            34455666654333 4899999999999998888776643311 0           1   12236788999999999999


Q ss_pred             HhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcc----c------chhHHHHH
Q 020228          137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS----F------DFFGYAVV  206 (329)
Q Consensus       137 ~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~----~------~~~G~~~~  206 (329)
                      ++|.|++|+|+|+++++|++.|+++++++++++|||++++++.+++++++|++++..+|.+    .      +..|+++.
T Consensus        80 ~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll  159 (303)
T PF08449_consen   80 LSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILL  159 (303)
T ss_pred             HHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998765531    1      12399999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH--hCChhhhhccCCccchhHHHHHHHHHHHHHHH
Q 020228          207 FLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFL--RGDLETTINFPYLLSPGFLVVLCFSCILAFFL  284 (329)
Q Consensus       207 l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  284 (329)
                      +++.+++|++.+++|++.++++.+++++++|++.++.++..+....  +||+.+..++.. .+|..+..++..++++...
T Consensus       160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~~s~~~~~g  238 (303)
T PF08449_consen  160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLLFSLTGALG  238 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888777  788776655443 3455678889999999999


Q ss_pred             HHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          285 NYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       285 ~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +...+.+++++||++.+++.++|++.++++|+++|||.
T Consensus       239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~  276 (303)
T PF08449_consen  239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHP  276 (303)
T ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999864

; GO: 0055085 transmembrane transport

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.95  E-value=3.1e-27  Score=206.22  Aligned_cols=275  Identities=20%  Similarity=0.225  Sum_probs=229.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccH-HHH
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPL-KTL  121 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  121 (329)
                      ..+..+++|+.+|+++.+++|+.-.  .|++|.+++.+|+++-+++....++....+.++ .        +...+| ..+
T Consensus        16 ~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r-~--------r~~~sw~~~L   84 (349)
T KOG1443|consen   16 LTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPR-A--------RVVLSWRDYL   84 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCc-c--------ccCCcHHHHH
Confidence            3455569999999999999999886  468899999999999999988887764433221 1        112445 578


Q ss_pred             HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228          122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF  201 (329)
Q Consensus       122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~  201 (329)
                      |+..|.|+.-+.++.++|.|++|++++.|++.|+.+++|+.+++.++.-||+++.-.+.++++.+|+++.++.+.+++..
T Consensus        85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~  164 (349)
T KOG1443|consen   85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE  164 (349)
T ss_pred             HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCC---CCchhHHHHHHHHHHHHHHHHHHH-hCChh----hhhccCCcc-chhHHH
Q 020228          202 GYAVVFLANITTAIYLATIARIGKSSG---LNSFGLMWCNGVICGPLLLLWTFL-RGDLE----TTINFPYLL-SPGFLV  272 (329)
Q Consensus       202 G~~~~l~s~~~~a~~~i~~~~~~~~~~---~~~~~l~~~~~~~~~~~l~~~~~~-~ge~~----~~~~~~~~~-~~~~~~  272 (329)
                      |+++.++++++.++++.+.|.++++.+   .+|.+.+++..++....++|.... +|...    +.+++.... -.....
T Consensus       165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g  244 (349)
T KOG1443|consen  165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG  244 (349)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence            999999999999999999999998654   589999999999988888877644 44322    122221111 122334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC-cccccc
Q 020228          273 VLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF-GLHTYC  328 (329)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~-~~~~~~  328 (329)
                      .+.+.|..+|...++.|....+||.++.+++|..|.+.+.+++..+.+|. +..+||
T Consensus       245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~  301 (349)
T KOG1443|consen  245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWL  301 (349)
T ss_pred             HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHH
Confidence            56778888999999999999999999999999999999999999998654 555554

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.1e-21  Score=171.64  Aligned_cols=237  Identities=16%  Similarity=0.116  Sum_probs=208.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhH
Q 020228           70 NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPM  149 (329)
Q Consensus        70 ~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~  149 (329)
                      +|..+.++.++|-+++.++.+.+.+....+.++               ..-+.+....++...++-.++..||+|++.|+
T Consensus        47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~---------------~apl~~y~~is~tn~~s~~~~yeaLKyvSyPt  111 (327)
T KOG1581|consen   47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSG---------------VAPLYKYSLISFTNTLSSWCGYEALKYVSYPT  111 (327)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhcccccCCC---------------CCchhHHhHHHHHhhcchHHHHHHHHhccchH
Confidence            588899999999999999998887654322111               12256778889999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---------ccchhHHHHHHHHHHHHHHHHHHH
Q 020228          150 YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------SFDFFGYAVVFLANITTAIYLATI  220 (329)
Q Consensus       150 ~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~i~~  220 (329)
                      +++.|++..+.+++...++.|+|++..++++..++..|+.++...+.         ..++.|+.++..+.+++++-+..+
T Consensus       112 q~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQ  191 (327)
T KOG1581|consen  112 QTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQ  191 (327)
T ss_pred             HHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHH
Confidence            99999999999999999999999999999999999999988754321         246899999999999999999999


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 020228          221 ARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQ  300 (329)
Q Consensus       221 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~  300 (329)
                      +++.++++.++++++++.|+++.+......+..|.+.+..++.. .+|+.+..+++.+++|.+.+...|..+++.+|++.
T Consensus       192 d~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~-~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~  270 (327)
T KOG1581|consen  192 DSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK-EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTF  270 (327)
T ss_pred             HHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHH
Confidence            99999999999999999999999998888777787766655543 46788899999999999999999999999999999


Q ss_pred             HHhhchhhHHHHHHHHhhhcCC
Q 020228          301 TICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       301 si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +.+.+.|+++++++|.++||+.
T Consensus       271 t~I~ttRk~~si~lS~i~f~h~  292 (327)
T KOG1581|consen  271 TTIMTTRKMVSIMLSCIVFGHP  292 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999875

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.5e-23  Score=175.37  Aligned_cols=237  Identities=17%  Similarity=0.127  Sum_probs=201.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhH
Q 020228           70 NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPM  149 (329)
Q Consensus        70 ~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~  149 (329)
                      .|.+...+.+.|..+..++.-++...+...               ++|...-+.....++.|.+.+..+|.|++|+|.|+
T Consensus        49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~~~---------------~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPT  113 (337)
T KOG1580|consen   49 KFTFALALVFFQCTANTVFAKVLFLIRKKT---------------EIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPT  113 (337)
T ss_pred             eehHHHHHHHHHHHHHHHHHHhheeecccc---------------cccCCcchHHHHHHHHHHHHHHhccchhcccCCcH
Confidence            488889999999999988887665432210               11221235667788999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc-------ccchhHHHHHHHHHHHHHHHHHHHHH
Q 020228          150 YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL-------SFDFFGYAVVFLANITTAIYLATIAR  222 (329)
Q Consensus       150 ~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~i~~~~  222 (329)
                      ..+-|++.|+.+++++.++.+|+++++++.+++.+++|++++-+.+.       +....|-++.++|.-.+++....++|
T Consensus       114 qVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdr  193 (337)
T KOG1580|consen  114 QVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDR  193 (337)
T ss_pred             HHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHH
Confidence            99999999999999999999999999999999999999999765432       22358889999999999999999999


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 020228          223 IGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTI  302 (329)
Q Consensus       223 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si  302 (329)
                      +...++.+...+++|+|+++...+-.....+||.-+...+.. ++|..|+-+.+.++++...+++.|..+...+|++.|+
T Consensus       194 ira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~-RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSi  272 (337)
T KOG1580|consen  194 IRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQ-RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSI  272 (337)
T ss_pred             HHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHH-hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEE
Confidence            988888899999999999999988887778999655443332 4567788899999999999999999999999999999


Q ss_pred             hhchhhHHHHHHHHhhhcCC
Q 020228          303 CGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       303 ~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +.+.|+..+++.|+++|+|+
T Consensus       273 vTTTRKfFTil~SVllf~np  292 (337)
T KOG1580|consen  273 VTTTRKFFTILISVLLFNNP  292 (337)
T ss_pred             EeehHHHHHHHHHHHHhcCc
Confidence            99999999999999999986

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=4.3e-22  Score=171.20  Aligned_cols=264  Identities=14%  Similarity=0.082  Sum_probs=222.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHH
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSSYNFP-CANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL  121 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~-~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (329)
                      +-++.+...++..+.--.+.+++++..||+ +.+.+++.|+++-..+.++..+.    ++         ++++.+||   
T Consensus        43 QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~----~~---------~k~r~iP~---  106 (367)
T KOG1582|consen   43 QFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL----IQ---------TKRRVIPW---  106 (367)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe----ec---------ccceecch---
Confidence            345555555555666666789999999996 99999999999887666554432    11         11233564   


Q ss_pred             HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc----c
Q 020228          122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL----S  197 (329)
Q Consensus       122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~----~  197 (329)
                      |....++.+...++.++|.|+.|++.|+..+.|++..+.+++.+.++.++|+++.++.+..++++|.++++..|.    +
T Consensus       107 rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPN  186 (367)
T KOG1582|consen  107 RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPN  186 (367)
T ss_pred             hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCC
Confidence            678888888899999999999999999999999999999999999999999999999999999999999887664    6


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHH
Q 020228          198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFS  277 (329)
Q Consensus       198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~  277 (329)
                      ||..|+++.-.+.+++|+-...+++..+..+.+..++++|...++.++++.....+||..+.|.+...+........++-
T Consensus       187 F~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~  266 (367)
T KOG1582|consen  187 FNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLF  266 (367)
T ss_pred             cceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHH
Confidence            88999999999999999999999999998889999999999999999999988899999988887665555445555566


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          278 CILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       278 ~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +..+++...+....++..+|.+.+.+.+.|+.+++++|+++|..+
T Consensus       267 s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKP  311 (367)
T KOG1582|consen  267 SLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKP  311 (367)
T ss_pred             HHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCc
Confidence            666777666667789999999999999999999999999999754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.85  E-value=3.6e-19  Score=159.67  Aligned_cols=234  Identities=16%  Similarity=0.102  Sum_probs=180.9

Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHH-HHHHHHHHhh
Q 020228           61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAV-AYLLYMVVSV  139 (329)
Q Consensus        61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n  139 (329)
                      ..|+.+++ . ..+..+.+.|++.+.+.+.+..+.+    +               ++++++.....+. ...+...+.+
T Consensus         7 ~~k~~~~~-~-~~~~~~~~~r~~~~~l~l~~~~~~~----~---------------~~~~~~~~~~~~~~~~~l~~~~~~   65 (260)
T TIGR00950         7 VIGQYLEG-Q-VPLYFAVFRRLIFALLLLLPLLRRR----P---------------PLKRLLRLLLLGALQIGVFYVLYF   65 (260)
T ss_pred             HHHHHHhc-C-CCHHHHHHHHHHHHHHHHHHHHHhc----c---------------CHhHHHHHHHHHHHHHHHHHHHHH
Confidence            57998875 2 4588899999999888776654432    1               1233445555654 5678888999


Q ss_pred             hhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec-CcccchhHHHHHHHHHHHHHHHHH
Q 020228          140 ESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR-DLSFDFFGYAVVFLANITTAIYLA  218 (329)
Q Consensus       140 ~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~i  218 (329)
                      .|++|+|++...++.++.|+++++++.+++|||++++++.++.+.++|+.+...+ +.+.+..|++++++++++++.+.+
T Consensus        66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~  145 (260)
T TIGR00950        66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTV  145 (260)
T ss_pred             HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999886543 344567899999999999999999


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHH-HHHHHHHHHhccch
Q 020228          219 TIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFF-LNYSIFLNTTLNSA  297 (329)
Q Consensus       219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~sa  297 (329)
                      ..|+..++.+.++.....+....+.+.+.+.....++...       .+...|..++..++++.. .....+.++++.++
T Consensus       146 ~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  218 (260)
T TIGR00950       146 LYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDP  218 (260)
T ss_pred             HHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999987544344444445666777777666554443211       123446666667766644 44455789999999


Q ss_pred             hHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          298 VTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       298 ~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      .+.++..+++|+.+.+++++++||.
T Consensus       219 ~~~s~~~~~~pv~~~ll~~~~~~E~  243 (260)
T TIGR00950       219 SAASILALAEPLVALLLGLLILGET  243 (260)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999986

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.84  E-value=2.5e-18  Score=160.44  Aligned_cols=260  Identities=12%  Similarity=0.064  Sum_probs=184.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH  123 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (329)
                      ..++.+.--.++.++..+.|+.++. |.+ |..+.++|+..+.+++.++...++.+.+           ..+.+++++..
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-----------~~~~~~~~~~~   80 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRS-----------LPPLSVSILSK   80 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCcchHHHHHH
Confidence            3444555556666777788999964 766 6779999999998887766433211100           01124667777


Q ss_pred             HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHH------hCcccCccchhhhhhhhhhheeeee-cCc
Q 020228          124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFL------AGQKYTPPVVGSVGLIILGAFVAGA-RDL  196 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~------~~e~~~~~~~~sv~~~~~Gv~l~~~-~~~  196 (329)
                      +...+++......+.+.+++|++++.+.++.++.|+++++++.++      +|||.+++++.++++.++|+.+... ++.
T Consensus        81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~  160 (358)
T PLN00411         81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGP  160 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCc
Confidence            777887765566689999999999999999999999999999999      6999999999999999999987432 111


Q ss_pred             -----------------------ccc-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHHHHH
Q 020228          197 -----------------------SFD-FFGYAVVFLANITTAIYLATIARIGKSSGLNS-FGLMWCNGVICGPLLLLWTF  251 (329)
Q Consensus       197 -----------------------~~~-~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~  251 (329)
                                             ..+ ..|.++++++++++|+|++..|+..++  +++ ....+++...+.....+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l  238 (358)
T PLN00411        161 RVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGL  238 (358)
T ss_pred             ccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHH
Confidence                                   112 459999999999999999999999874  344 34455555544443333332


Q ss_pred             H-hCC-hhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          252 L-RGD-LETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       252 ~-~ge-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      . +++ .. .|.  ...+... ..+++.++...+.....++++++.+|...++..+++|+.++++|++++||.
T Consensus       239 ~~~~~~~~-~~~--~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~  307 (358)
T PLN00411        239 VVEKNNPS-VWI--IHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS  307 (358)
T ss_pred             HHccCCcc-cce--eccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC
Confidence            2 221 11 111  1112222 234555555444444557899999999999999999999999999999986

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.83  E-value=4.7e-18  Score=155.30  Aligned_cols=248  Identities=10%  Similarity=0.074  Sum_probs=186.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH  123 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (329)
                      .+...++|+...+.    .|+.+++  .+ |..+.++|++.+.+++.+....++.+               ..++++++.
T Consensus        13 ~~~~~~iWg~~~~~----~K~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~~~~---------------~~~~~~~~~   70 (292)
T PRK11272         13 LFALYIIWGSTYLV----IRIGVES--WP-PLMMAGVRFLIAGILLLAFLLLRGHP---------------LPTLRQWLN   70 (292)
T ss_pred             HHHHHHHHhhHHHH----HHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHHHhCCC---------------CCcHHHHHH
Confidence            35667888877664    5988873  34 88899999999988877665432211               013456677


Q ss_pred             HhHHHHHH-HHHHHHhhhhc-cccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec-Ccccch
Q 020228          124 TLPLAVAY-LLYMVVSVESV-RGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR-DLSFDF  200 (329)
Q Consensus       124 ~~~~~~~~-~~~~~~~n~al-~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~-~~~~~~  200 (329)
                      ....|.+. .....+.+.+. ++++++...++.++.|+++++++.+ +|||++++++.++++.++|+.+...+ +.+.+.
T Consensus        71 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~  149 (292)
T PRK11272         71 AALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNP  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccch
Confidence            77777654 45566778888 9999999999999999999999986 69999999999999999999886533 344566


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHH
Q 020228          201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCIL  280 (329)
Q Consensus       201 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~  280 (329)
                      .|.++++++++++|.+.+..||..+  + ++.....+....+.+.+.+.....++..   .  ...+...|..+++.+++
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~i~~l~i~  221 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPL--P-VGMMAGAAEMLAAGVVLLIASLLSGERL---T--ALPTLSGFLALGYLAVF  221 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHcCCcc---c--ccCCHHHHHHHHHHHHH
Confidence            8999999999999999999999754  2 3344556666777666666554433311   1  11133456677777776


Q ss_pred             HHHHHH-HHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          281 AFFLNY-SIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       281 ~~~~~~-~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +....+ ..+.++++.++...++..+++|+.+.+++++++||.
T Consensus       222 ~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~  264 (292)
T PRK11272        222 GSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET  264 (292)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            655444 447789999999999999999999999999999986

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.83  E-value=3.1e-18  Score=156.72  Aligned_cols=243  Identities=12%  Similarity=0.087  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH  123 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (329)
                      .+.++++|+...+    ..|..+++  +| |..+.++|+..+.+++....+.  .+.+                +++.+.
T Consensus         9 ~l~a~~~Wg~~~~----~~k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~~~--~~~~----------------~~~~~~   63 (295)
T PRK11689          9 GLIAILLWSTMVG----LIRGVSES--LG-PVGGAAMIYSVSGLLLLLTVGF--PRLR----------------QFPKRY   63 (295)
T ss_pred             HHHHHHHHHHHHH----HHHHHHcc--CC-hHHHHHHHHHHHHHHHHHHccc--cccc----------------cccHHH
Confidence            4677788887665    46998874  45 8889999999998877765321  1100                111223


Q ss_pred             HhHHHHHHHHHHHHhhhhcc----ccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---
Q 020228          124 TLPLAVAYLLYMVVSVESVR----GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---  196 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~----~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---  196 (329)
                      .+.-++.+.....+.+.+++    +.+.....++.++.|+++.+++.+++|||++++++.++++.++|+.+...++.   
T Consensus        64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~  143 (295)
T PRK11689         64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLS  143 (295)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccch
Confidence            33334445566666666665    46777888999999999999999999999999999999999999988765432   


Q ss_pred             --------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccch
Q 020228          197 --------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSP  268 (329)
Q Consensus       197 --------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~  268 (329)
                              +.+..|+++++++++++|.|+++.||..+  +.++....+   ..+...+.+.....++..      ...++
T Consensus       144 ~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~~~~~~------~~~~~  212 (295)
T PRK11689        144 LAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFLSPQPA------MVFSL  212 (295)
T ss_pred             hhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHHhcCcc------ccCCH
Confidence                    12356999999999999999999999865  345554422   222233333222233211      11223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          269 GFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ..|..+++.++.+.......++++++.+|...++..+++|+.+++++++++||.
T Consensus       213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~  266 (295)
T PRK11689        213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP  266 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence            445566666666666666778999999999999999999999999999999986

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.81  E-value=2.6e-17  Score=150.87  Aligned_cols=251  Identities=12%  Similarity=0.099  Sum_probs=176.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      ..++.+++|+...+.    .|..+++  ++ |..+.++|+..+.+.+....+.  .+                .++   +
T Consensus         8 ~~l~~~~~Wg~~~~~----~k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~~~--~~----------------~~~---~   59 (299)
T PRK11453          8 LALLVVVVWGLNFVV----IKVGLHN--MP-PLMLAGLRFMLVAFPAIFFVAR--PK----------------VPL---N   59 (299)
T ss_pred             HHHHHHHHHhhhHHH----HHHHHhc--CC-HHHHHHHHHHHHHHHHHHHhcC--CC----------------Cch---H
Confidence            356777888877664    5988864  45 8899999999876555443311  00                112   3


Q ss_pred             HHhHHHHHH-HHHHHHhhhhccc-cchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC---cc
Q 020228          123 HTLPLAVAY-LLYMVVSVESVRG-VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD---LS  197 (329)
Q Consensus       123 ~~~~~~~~~-~~~~~~~n~al~~-~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~---~~  197 (329)
                      .....+++. .....+.+.+++| .|.+...++.++.|+++.+++++++|||+++++++++++.++|+.+...++   .+
T Consensus        60 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~  139 (299)
T PRK11453         60 LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQH  139 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcc
Confidence            344445543 3344466778887 689999999999999999999999999999999999999999998865432   23


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHHHH-hCChhhhhccCCccchhHHHHHH
Q 020228          198 FDFFGYAVVFLANITTAIYLATIARIGKSSG-LNSFGLMWCNGVICGPLLLLWTFL-RGDLETTINFPYLLSPGFLVVLC  275 (329)
Q Consensus       198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~~-~ge~~~~~~~~~~~~~~~~~~l~  275 (329)
                      .+..|+.+++++++++|.|.++.|+..++.+ ........+....+.......... +++....... ...++..|..++
T Consensus       140 ~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  218 (299)
T PRK11453        140 VAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL-VTIDMTTILSLM  218 (299)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh-ccCCHHHHHHHH
Confidence            3457999999999999999999999865322 122233444444443333333222 2221100011 112445677888


Q ss_pred             HHHHHHHHHHHHH-HHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          276 FSCILAFFLNYSI-FLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       276 ~~~~~~~~~~~~~-~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +.++++....+.. +..+++.+|.+.++...++|+.++++|++++||.
T Consensus       219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~  266 (299)
T PRK11453        219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER  266 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8888777766655 6789999999999999999999999999999987

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.81  E-value=1e-17  Score=153.27  Aligned_cols=250  Identities=12%  Similarity=0.000  Sum_probs=167.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHH
Q 020228           45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT  124 (329)
Q Consensus        45 ~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (329)
                      ++++++|+...+    ..|.+ .  +++ |..+.++|.+++.+++..+....+ +.+...        ++..++++....
T Consensus        14 l~a~~~wg~~~~----~~k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~--------~~~~~~~~~~~~   76 (296)
T PRK15430         14 LAAYFIWGIAPA----YFKLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLK--------TLIQTPQKIFML   76 (296)
T ss_pred             HHHHHHHHHHHH----HHHHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHH--------HHHcCHHHHHHH
Confidence            455566665544    45875 3  345 788999999998876654432211 000000        000022333333


Q ss_pred             hHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchhHHH
Q 020228          125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGYA  204 (329)
Q Consensus       125 ~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~G~~  204 (329)
                      ..-++.......+.+.+++++|++...++..+.|+++++++++++|||++++++.++++.++|+.+...++.+.    ..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~  152 (296)
T PRK15430         77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PI  152 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cH
Confidence            33345577788999999999999999999999999999999999999999999999999999998865332222    15


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccch-hHHHHHHHHHHHHHH
Q 020228          205 VVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSP-GFLVVLCFSCILAFF  283 (329)
Q Consensus       205 ~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  283 (329)
                      +++++++++|.|.+..|+..++...+......+..+.+.+...+.   ..+....++    .++ ..+..+...++.+..
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~g~~t~i  225 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMG----QNPMSLNLLLIAAGIVTTV  225 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCccccc----CCcHHHHHHHHHHHHHHHH
Confidence            688899999999999988754322222333334444443332211   111000011    112 123444555656666


Q ss_pred             HHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          284 LNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       284 ~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ..++.+.++++.+|...++..+++|+.++++|++++||.
T Consensus       226 ~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~  264 (296)
T PRK15430        226 PLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK  264 (296)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777778999999999999999999999999999999986

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.80  E-value=1.4e-16  Score=145.64  Aligned_cols=239  Identities=16%  Similarity=0.070  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHH
Q 020228           45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT  124 (329)
Q Consensus        45 ~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (329)
                      ++++++|.    +.....|+.+++  +| |..+.++|++.+.+++.+..+.++.+                .++++++..
T Consensus        18 ~la~~~~~----~~~~~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~~~~~~----------------~~~~~~~~~   74 (293)
T PRK10532         18 LIAMASIQ----SGASLAKSLFPL--VG-APGVTALRLALGTLILIAIFKPWRLR----------------FAKEQRLPL   74 (293)
T ss_pred             HHHHHHHH----hhHHHHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHhHHhcc----------------CCHHHHHHH
Confidence            44444444    334468999985  45 67799999999988877654321111                234566777


Q ss_pred             hHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec--C-cccchh
Q 020228          125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR--D-LSFDFF  201 (329)
Q Consensus       125 ~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~--~-~~~~~~  201 (329)
                      +..|++......+.+.+++|+|++...++..+.|+++.+++    +|++.+  ...+.+.++|+.+....  + .+.+..
T Consensus        75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~  148 (293)
T PRK10532         75 LFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLT  148 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChH
Confidence            78888888888899999999999999999999999999887    355544  44566778998775432  2 234567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHH
Q 020228          202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA  281 (329)
Q Consensus       202 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (329)
                      |.++++++++++|.|.+..|+..+  +.++.... +...++...+.+.....+. .      ...++..|..++..++++
T Consensus       149 G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~------~~~~~~~~~~~l~lgv~~  218 (293)
T PRK10532        149 GAALALGAGACWAIYILSGQRAGA--EHGPATVA-IGSLIAALIFVPIGALQAG-E------ALWHWSILPLGLAVAILS  218 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHH-HHHHHHHHHHHHHHHHccC-c------ccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999976  34666654 4455555555555443321 0      112333455556777777


Q ss_pred             HHHHHHH-HHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          282 FFLNYSI-FLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       282 ~~~~~~~-~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ....+.. +..+++.+|...++..+++|+.++++|++++||.
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~  260 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET  260 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC
Confidence            6666644 7899999999999999999999999999999986

>TIGR00688 rarD rarD protein

Probab=99.77  E-value=2.2e-16  Score=141.57  Aligned_cols=247  Identities=9%  Similarity=-0.012  Sum_probs=166.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccH-HHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPL-KTL  121 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~  121 (329)
                      .++++++|+..++    ..|+ ..+  .+ |..+.++|++.+.+++.+.... ++.+.. .++       .++.++ +..
T Consensus         7 ~i~a~~~wg~~~~----~~k~-~~~--~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~-~~~-------~~~~~~~~~~   70 (256)
T TIGR00688         7 SLLASFLFGYMYY----YSKL-LKP--LP-ATDILGHRMIWSFPFMLLSVTLFRQWAAL-IER-------LKRIQKRPLI   70 (256)
T ss_pred             HHHHHHHHHHHHH----HHHH-hcc--CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHH-------HhCcccchHH
Confidence            4566677776655    4698 443  44 8899999999988776554322 211100 000       000111 223


Q ss_pred             HHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccchh
Q 020228          122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF  201 (329)
Q Consensus       122 ~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~~~  201 (329)
                      ......+++......+.+.|+++++++.++++.++.|+++++++.+++|||+++++++++++.++|+.+...++.+.+  
T Consensus        71 ~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~--  148 (256)
T TIGR00688        71 LSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP--  148 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch--
Confidence            334556677888899999999999999999999999999999999999999999999999999999987644322221  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHH
Q 020228          202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA  281 (329)
Q Consensus       202 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (329)
                        .+++++++++|.|.+..|+..++   +..+.... .....+...+... .+++...   ........|..++..|+++
T Consensus       149 --~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~l~~~g~~t  218 (256)
T TIGR00688       149 --WEALVLAFSFTAYGLIRKALKNT---DLAGFCLE-TLSLMPVAIYYLL-QTDFATV---QQTNPFPIWLLLVLAGLIT  218 (256)
T ss_pred             --HHHHHHHHHHHHHHHHHhhcCCC---CcchHHHH-HHHHHHHHHHHHH-HhccCcc---cccCchhHHHHHHHHHHHH
Confidence              46789999999999999887542   22222221 2222222222211 1111110   1111112466667777777


Q ss_pred             HHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhh
Q 020228          282 FFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAI  318 (329)
Q Consensus       282 ~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~  318 (329)
                      .....+.+.++|+.+|...++..+++|+.++++++++
T Consensus       219 ~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       219 GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777899999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.77  E-value=1.8e-16  Score=145.38  Aligned_cols=246  Identities=11%  Similarity=0.044  Sum_probs=176.7

Q ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhh
Q 020228           60 MFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSV  139 (329)
Q Consensus        60 ~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  139 (329)
                      ..+.++-+. |++.|.+-+++-.+...++.......++.+   ++.        .+..++.+.+.+.+|++-....++.+
T Consensus        30 ~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~---~~~--------~~~~~~~~w~y~lla~~Dv~aN~~~v   97 (334)
T PF06027_consen   30 TFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGF---KKW--------LKVLKRPWWKYFLLALLDVEANYLVV   97 (334)
T ss_pred             HHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhcccc---ccc--------hhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            345555554 778787655555544433322222111100   000        01122445667778999999999999


Q ss_pred             hhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---------ccchhHHHHHHHHH
Q 020228          140 ESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------SFDFFGYAVVFLAN  210 (329)
Q Consensus       140 ~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---------~~~~~G~~~~l~s~  210 (329)
                      .|++|++++..|++.+++.+++++++++++|+|+++.++.++++.++|+.+....|.         +....|.+++++++
T Consensus        98 ~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a  177 (334)
T PF06027_consen   98 LAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGA  177 (334)
T ss_pred             HHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988765542         23489999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 020228          211 ITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFL  290 (329)
Q Consensus       211 ~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (329)
                      +++|+++++.|+..++  .+..+.+....+++.++..+...+. |..+..+..  .+...+..++..+++-+......-.
T Consensus       178 ~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p~  252 (334)
T PF06027_consen  178 ILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVPI  252 (334)
T ss_pred             HHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999984  5778888888888877766554322 333322222  2233344444444444444444466


Q ss_pred             HHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          291 NTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       291 ~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      .++.+||+..++--......++++++++||+.
T Consensus       253 ~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~  284 (334)
T PF06027_consen  253 VLRMSSATFFNLSLLTSDFYALIIDIFFFGYK  284 (334)
T ss_pred             HHHhCccceeehHHHHhhHHHHHHHHHhcCcc
Confidence            78999999999988889999999999999875

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.72  E-value=2.3e-17  Score=142.60  Aligned_cols=242  Identities=18%  Similarity=0.223  Sum_probs=186.5

Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhh
Q 020228           61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE  140 (329)
Q Consensus        61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  140 (329)
                      .-+++.+.. =.....+++.|+++...-.++...    +++..         +.++|.   |.+...-..+.....++|.
T Consensus        21 ~lE~L~~~~-pgsgNLITFaqFlFia~eGlif~s----kf~~~---------k~kipl---k~Y~i~V~mFF~vnv~NN~   83 (330)
T KOG1583|consen   21 FLELLVRNE-PGSGNLITFAQFLFIATEGLIFTS----KFFTV---------KPKIPL---KDYAITVAMFFIVNVTNNY   83 (330)
T ss_pred             HHHHHHHhC-CCCeeehHHHHHHHHHHhceeeec----ccccc---------CCCCch---hhhheehheeeeeeeeccc
Confidence            345566532 235678999999987665444331    12111         111343   5555556666677789999


Q ss_pred             hccc-cchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee---cCccc----------------ch
Q 020228          141 SVRG-VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA---RDLSF----------------DF  200 (329)
Q Consensus       141 al~~-~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~---~~~~~----------------~~  200 (329)
                      ++++ +|+|.+.++|+.+++.+++.++++.|++++.+++.+++++.+|+++++.   +|...                -.
T Consensus        84 al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~  163 (330)
T KOG1583|consen   84 ALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWL  163 (330)
T ss_pred             eeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHH
Confidence            9999 8999999999999999999999999999999999999999999999754   22110                15


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhc----cC-----C--ccchh
Q 020228          201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTIN----FP-----Y--LLSPG  269 (329)
Q Consensus       201 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~----~~-----~--~~~~~  269 (329)
                      .|+.+...+.+.+|...++++...++++.++-|.+||+..++.|+.+..   .+|..+.|+    .+     .  ..-|.
T Consensus       164 iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~---~~div~~~~~~~~se~~~~p~~g~~vP~  240 (330)
T KOG1583|consen  164 IGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFM---GDDIVSHWRLAFKSESYLIPLLGFKVPS  240 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHh---cchHHHHHHHHhcCcceeccccCccccH
Confidence            8999999999999999999999999999999999999999999877642   334333221    11     1  11356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          270 FLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       270 ~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      .|..++.+++.-+++.-..+..-.+++++|.+++-++|+.++.++|.+.|+|+
T Consensus       241 ~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Np  293 (330)
T KOG1583|consen  241 MWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENP  293 (330)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCC
Confidence            68888888888777776668888999999999999999999999999999875

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.71  E-value=1.2e-15  Score=135.13  Aligned_cols=205  Identities=11%  Similarity=0.086  Sum_probs=163.7

Q ss_pred             cHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc
Q 020228          117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL  196 (329)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~  196 (329)
                      ++++..++...+++|++...+.+.++++++.+++|+++.+..++|++++++++|||.++++|.++.+.++|+.+...++.
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            35667778888999999999999999999999999999999999999999999999999999999999999999643211


Q ss_pred             -----------------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh
Q 020228          197 -----------------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT  259 (329)
Q Consensus       197 -----------------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~  259 (329)
                                       +....|+++.+++++++|+..++.||++|+.+.+.+.........+.++.++..... |+.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~  171 (244)
T PF04142_consen   93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAI  171 (244)
T ss_pred             cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence                             113689999999999999999999999998777777777777777777776654332 22222


Q ss_pred             hc--cCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCcccc
Q 020228          260 IN--FPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGLHT  326 (329)
Q Consensus       260 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~~~  326 (329)
                      .+  +-..+++..|..++..++.|....    ..+|+.+...-.....+..+++.++++++||...-..
T Consensus       172 ~~~g~f~G~~~~~~~~i~~~a~gGllva----~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~  236 (244)
T PF04142_consen  172 SESGFFHGYSWWVWIVIFLQAIGGLLVA----FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS  236 (244)
T ss_pred             ccCCchhhcchHHHHHHHHHHHhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence            11  122334555666666666665544    4789999999999999999999999999998664443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.65  E-value=3.6e-14  Score=128.97  Aligned_cols=194  Identities=18%  Similarity=0.149  Sum_probs=138.9

Q ss_pred             HHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc-ccc
Q 020228          121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL-SFD  199 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~-~~~  199 (329)
                      +.....-++.......+.+.++++.|++....+..+.|+++.+++.+++||+++++++.++.+++.|+.+...++. +.+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~  142 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHR  142 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence            3344444556778888999999999999999999999999999999999999999999999999999988654332 345


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-hHHHH---HHHHH-HHHHHHHHHHhCChhhhhccCCccchhHHHHH
Q 020228          200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSF-GLMWC---NGVIC-GPLLLLWTFLRGDLETTINFPYLLSPGFLVVL  274 (329)
Q Consensus       200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~-~l~~~---~~~~~-~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l  274 (329)
                      ..|..++++++++++.|.+..|+..++  .++. ....+   ..... .++.. .....++..  ..   ..+...+..+
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~---~~~~~~~~~~  214 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAALG--VPAFYSALGYLGIGFLAMGWPFLL-LYLKRHGRS--MF---PYARQILPSA  214 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccc--hhcccccHHHHHHHHHHHHHHHHH-HHHHHhccc--hh---hhHHHHHHHH
Confidence            678889999999999999988876432  2222 12222   22222 22221 111112210  00   0111223344


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       275 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ...++.+.......+.++++.++...+...++.|+.++++|++++||.
T Consensus       215 ~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~  262 (281)
T TIGR03340       215 TLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER  262 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC
Confidence            455555556666678899999999999999999999999999999987

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.62  E-value=1.4e-12  Score=118.20  Aligned_cols=240  Identities=15%  Similarity=0.140  Sum_probs=166.7

Q ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHH
Q 020228           57 LLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMV  136 (329)
Q Consensus        57 ~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (329)
                      ......|.....  ...+....+.|.....+......+.+..+.+           +...+  ..+..+.-++.......
T Consensus        21 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~   85 (292)
T COG0697          21 LSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEPRGLR-----------PALRP--WLLLLLLALLGLALPFL   85 (292)
T ss_pred             HHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhccccc-----------ccccc--hHHHHHHHHHHHHHHHH
Confidence            333344665553  2334556666888777764333332211000           00011  12233444456778888


Q ss_pred             HhhhhccccchhHHHHHHhHHHHHHHHHHH-HHhCcccCccchhhhhhhhhhheeeeecCcccc---hhHHHHHHHHHHH
Q 020228          137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEY-FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFD---FFGYAVVFLANIT  212 (329)
Q Consensus       137 ~~n~al~~~~vs~~~il~s~~pv~~~l~~~-~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~---~~G~~~~l~s~~~  212 (329)
                      +.+.++++++++..+++.++.|+++.+++. +++|||++++++.++.+.+.|+.+...++...+   ..|..++++++++
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~  165 (292)
T COG0697          86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALL  165 (292)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997 777999999999999999999999887766443   5899999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHH-HHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHH-HHHHHHH
Q 020228          213 TAIYLATIARIGKSSGLNSFGLMW-CNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFF-LNYSIFL  290 (329)
Q Consensus       213 ~a~~~i~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~  290 (329)
                      +|++.+..|+..   +.++....+ +... . ..+........+.      +.......|..+...++++.. .....+.
T Consensus       166 ~a~~~~~~~~~~---~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~i~~~~~~~  234 (292)
T COG0697         166 WALYTALVKRLS---RLGPVTLALLLQLL-L-ALLLLLLFFLSGF------GAPILSRAWLLLLYLGVFSTGLAYLLWYY  234 (292)
T ss_pred             HHHHHHHHHHhc---CCChHHHHHHHHHH-H-HHHHHHHHHhccc------cccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987   345556555 3332 1 1111111111111      011233446677777777765 5555578


Q ss_pred             HHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          291 NTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       291 ~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      .+++.++...++....+++.+.+++++++||.
T Consensus       235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~  266 (292)
T COG0697         235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEP  266 (292)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999987

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.56  E-value=4.9e-14  Score=116.19  Aligned_cols=121  Identities=26%  Similarity=0.357  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhc---cCC--c-cchhH
Q 020228          202 GYAVVFLANITTAIYLATIARIGKS-----SGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTIN---FPY--L-LSPGF  270 (329)
Q Consensus       202 G~~~~l~s~~~~a~~~i~~~~~~~~-----~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~---~~~--~-~~~~~  270 (329)
                      |++++++|.++.|+++++.|+.+++     .+.++.++++|+++.+.+.+++..+..|+......   ...  . .++..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            7899999999999999999999887     68999999999999999999998877766542211   111  1 14566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          271 LVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       271 ~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +..++.+|++++..|++.+.+++++||+++++++++|++..+++|+++|||.
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~  132 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP  132 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc
Confidence            7888999999999999999999999999999999999999999999999976

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.54  E-value=1.2e-13  Score=124.69  Aligned_cols=198  Identities=18%  Similarity=0.173  Sum_probs=149.6

Q ss_pred             HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---
Q 020228          120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---  196 (329)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---  196 (329)
                      ..|.-+.++.+..+..++.|.||++.+++..+++.+++-+||.+++.++.+||++..|.+++++.+.|+++++.+|.   
T Consensus       158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence            34444555556667888999999999999999999999999999999999999999999999999999999987743   


Q ss_pred             -----ccchhHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCchhHHHHHHHHHHHHHHHHHHH---hCChhhhhccCCcc
Q 020228          197 -----SFDFFGYAVVFLANITTAIYLATIARIGKSS--GLNSFGLMWCNGVICGPLLLLWTFL---RGDLETTINFPYLL  266 (329)
Q Consensus       197 -----~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~--~~~~~~l~~~~~~~~~~~l~~~~~~---~ge~~~~~~~~~~~  266 (329)
                           +-...|.++++++++.+|.|.++.||...++  +.+--....|..++..+++.|..++   +++  +.++.|  .
T Consensus       238 ~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~--e~F~lP--~  313 (416)
T KOG2765|consen  238 SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGE--ERFELP--S  313 (416)
T ss_pred             ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhcc--CcccCC--C
Confidence                 2348999999999999999999999998766  4454444556666666555543321   233  112333  3


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC
Q 020228          267 SPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN  321 (329)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~  321 (329)
                      +.++-.+++.+++..+..-+...++.-.|||++.++.-.+...++++.-.++-|+
T Consensus       314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~  368 (416)
T KOG2765|consen  314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGK  368 (416)
T ss_pred             CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCC
Confidence            3333344455555667777888889999999999988888777777776665443

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.54  E-value=1.1e-14  Score=125.50  Aligned_cols=258  Identities=10%  Similarity=0.037  Sum_probs=180.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccc--ccCCCCCccCCCCCccccHH
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIIN--FTMGDSLMTSDSSSTFVPLK  119 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  119 (329)
                      +.++.....-+..+.+++...|-+..+     |..+.-.|+++-.+..+.+.-..+..  .|+          .+|    
T Consensus        37 ~~gl~l~~vs~ff~~~~vv~t~~~e~~-----p~e~a~~r~l~~mlit~pcliy~~~~v~gp~----------g~R----   97 (346)
T KOG4510|consen   37 NLGLLLLTVSYFFNSCMVVSTKVLEND-----PMELASFRLLVRMLITYPCLIYYMQPVIGPE----------GKR----   97 (346)
T ss_pred             ccCceehhhHHHHhhHHHhhhhhhccC-----hhHhhhhhhhhehhhhheEEEEEeeeeecCC----------CcE----
Confidence            344333333366777777777776642     55566666444433333322111111  111          111    


Q ss_pred             HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---
Q 020228          120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---  196 (329)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---  196 (329)
                        +.++.=|+.........++|++|.+++.+.++-..+|+||.+++++++||++++...++..+.+.||+++..+..   
T Consensus        98 --~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG  175 (346)
T KOG4510|consen   98 --KWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFG  175 (346)
T ss_pred             --EEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccC
Confidence              112222666677777889999999999999999999999999999999999999999999999999999754311   


Q ss_pred             -----------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCc
Q 020228          197 -----------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYL  265 (329)
Q Consensus       197 -----------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~  265 (329)
                                 +.+..|.+.++.++++.|---+..|++-+  +.+....+.|-..++.+..++.....|+    +..|+-
T Consensus       176 ~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig~----~~lP~c  249 (346)
T KOG4510|consen  176 DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIGA----VQLPHC  249 (346)
T ss_pred             CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhccc----eecCcc
Confidence                       23457888888888888887788888877  4466666666676666665554444454    333432


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC-Ccccccc
Q 020228          266 LSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN-FGLHTYC  328 (329)
Q Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~-~~~~~~~  328 (329)
                        ...|+.+...|+.|+..+....+.+++=-|-..++..+..-+.+.+.-+++||| +++.|||
T Consensus       250 --gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~  311 (346)
T KOG4510|consen  250 --GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWV  311 (346)
T ss_pred             --ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhh
Confidence              233667788899999999988888776666677888999999999999999975 4777776

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.52  E-value=9.5e-13  Score=114.43  Aligned_cols=270  Identities=19%  Similarity=0.187  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-----cCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCc---cC-CCCCccccH
Q 020228           48 AISYMACAVLLVMFNKAALS-----SYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLM---TS-DSSSTFVPL  118 (329)
Q Consensus        48 ~~~~~~~s~~~~~~nK~ll~-----~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~  118 (329)
                      ..+...++..-+++.||.-+     .-+|..|..-+..-++.-+.++.++...+...-++.+.-+   +. ++++   |.
T Consensus         8 s~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~---pf   84 (372)
T KOG3912|consen    8 SLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSS---PF   84 (372)
T ss_pred             hhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccC---CC
Confidence            44555666667778999775     2357778755555444444455444332211111111100   00 1111   11


Q ss_pred             HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc--
Q 020228          119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--  196 (329)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--  196 (329)
                      + =+.++|.++|-....-.-|.++.+++++.+|++|....+|+.+++.-++++++..++|+++..+.+|++.+...|.  
T Consensus        85 ~-p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~  163 (372)
T KOG3912|consen   85 N-PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHL  163 (372)
T ss_pred             C-cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccc
Confidence            1 1356788999888888899999999999999999999999999999999999999999999999999998765432  


Q ss_pred             --------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH----H-hCChhh-----
Q 020228          197 --------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTF----L-RGDLET-----  258 (329)
Q Consensus       197 --------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~----~-~ge~~~-----  258 (329)
                              +.-..|..+.+++.+.-|++.++.+|.+++++.+|.+...|..+++.+++-.+..    + .|+-..     
T Consensus       164 ~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g  243 (372)
T KOG3912|consen  164 VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRG  243 (372)
T ss_pred             ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCc
Confidence                    3337899999999999999999999999999999999999999988554443321    1 121100     


Q ss_pred             hhc-----cCC-ccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC
Q 020228          259 TIN-----FPY-LLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN  321 (329)
Q Consensus       259 ~~~-----~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~  321 (329)
                      .++     +.. ...|.....+...-+.-.+.|++.....|..|+++..+...+|.....+++.....|
T Consensus       244 ~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E  312 (372)
T KOG3912|consen  244 VLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE  312 (372)
T ss_pred             chhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence            000     000 011211122222222234578888888999999999999999999999988765543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.52  E-value=6e-12  Score=114.81  Aligned_cols=241  Identities=13%  Similarity=0.095  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH  123 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (329)
                      .++++++|+...+.    .|++.   +++.+...   +...+.++........+  .|+.            .+++.+..
T Consensus         6 ~lia~~~wGs~g~~----~k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~--~~~~------------~~~~~~~~   61 (290)
T TIGR00776         6 ALIPALFWGSFVLI----NVKIG---GGPYSQTL---GTTFGALILSIAIAIFV--LPEF------------WALSIFLV   61 (290)
T ss_pred             HHHHHHHHhhhHHH----HhccC---CCHHHHHH---HHHHHHHHHHHHHHHHh--CCcc------------cccHHHHH
Confidence            35677888877664    36655   55655433   45555554444332211  0100            01223333


Q ss_pred             HhHHHHHHHHHHHHhhhhccccchhHHHHHHh-HHHHHHHHHHHHHhCcccCccc----hhhhhhhhhhheeeeecCcc-
Q 020228          124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPV----VGSVGLIILGAFVAGARDLS-  197 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s-~~pv~~~l~~~~~~~e~~~~~~----~~sv~~~~~Gv~l~~~~~~~-  197 (329)
                      -+.-|+.....+.+...|.++++++.+..+-. +.+++..+.+.+++||+.++++    +.+++++++|+.+.+..+.+ 
T Consensus        62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~  141 (290)
T TIGR00776        62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS  141 (290)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc
Confidence            34445557778899999999999999999888 8888999999999999999999    99999999999997543211 


Q ss_pred             ------cc-hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH---HH-HHHHHHHHHHhCChhhhhccCCcc
Q 020228          198 ------FD-FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGV---IC-GPLLLLWTFLRGDLETTINFPYLL  266 (329)
Q Consensus       198 ------~~-~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~---~~-~~~l~~~~~~~ge~~~~~~~~~~~  266 (329)
                            .+ ..|++++++++++++.|.+..|+.    ++++.+..+.+..   ++ ..+..+.   . +     +.+ . 
T Consensus       142 ~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~-----~~~-~-  206 (290)
T TIGR00776       142 AGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH---I-L-----AKP-L-  206 (290)
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH---h-c-----ccc-h-
Confidence                  33 689999999999999999999975    3577777444433   33 3222222   1 0     001 1 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHhhchhhHHHHHHHHhhhcCCc
Q 020228          267 SPGFLVVLCFSCILAFFLNYSIFLNTT-LNSAVTQTICGNLKVCFPTTLHIAIATNFG  323 (329)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~~~~~~i~-~~sa~t~si~~~~k~i~~~~~s~~~f~~~~  323 (329)
                      .+..+......|++....+...+...+ +.++.+.++..+.+++.+++.+++++||..
T Consensus       207 ~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~  264 (290)
T TIGR00776       207 KKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK  264 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence            122233334477775444545557778 999999999999999999999999999873

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.51  E-value=1.1e-11  Score=112.17  Aligned_cols=260  Identities=14%  Similarity=0.109  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHHHHhHHHH
Q 020228           53 ACAVLLVMFNKAALSSY--NFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAV  129 (329)
Q Consensus        53 ~~s~~~~~~nK~ll~~~--~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (329)
                      +-..++.+..||.-.+.  .|.+.....+.+.+-..++...+.+- +...-+..+.+.  +  .....+++..++...++
T Consensus        25 ~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~--~--~i~~~~~~~lk~~vPa~  100 (345)
T KOG2234|consen   25 AQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLS--K--EILAAPRETLKVSVPAL  100 (345)
T ss_pred             HHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcC--H--HHHhChHHHHHHHHHHH
Confidence            33456667778877654  34434445555554443333333221 110000000000  0  01122445667788888


Q ss_pred             HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC-----------ccc
Q 020228          130 AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD-----------LSF  198 (329)
Q Consensus       130 ~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~-----------~~~  198 (329)
                      .|++...+...++.+.+.+++|+.-.+..+.|+++.+++++||.++++|.++++.+.|+.+...+.           .+.
T Consensus       101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n  180 (345)
T KOG2234|consen  101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQN  180 (345)
T ss_pred             HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999964211           123


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhh--hccCCccchhHHHHHHH
Q 020228          199 DFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT--INFPYLLSPGFLVVLCF  276 (329)
Q Consensus       199 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~--~~~~~~~~~~~~~~l~~  276 (329)
                      .+.|+...+.+++++++..++.++++++.+.+-|-.......++.++.+.....+ |....  ..+-+.++...|..++.
T Consensus       181 ~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vVl~  259 (345)
T KOG2234|consen  181 PFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVVLL  259 (345)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHHHH
Confidence            5899999999999999999999999987776766666666677777766655443 33333  22334456667888888


Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcC
Q 020228          277 SCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATN  321 (329)
Q Consensus       277 ~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~  321 (329)
                      .++.|....+    ++|+.+...-.....+..+++.+.|+.+||-
T Consensus       260 ~a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~  300 (345)
T KOG2234|consen  260 NAVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDF  300 (345)
T ss_pred             HhccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            8888866655    6788888888888888999999999777754

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.35  E-value=2.7e-10  Score=98.04  Aligned_cols=228  Identities=17%  Similarity=0.117  Sum_probs=172.4

Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhh
Q 020228           61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE  140 (329)
Q Consensus        61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  140 (329)
                      +.|.++-..|   +.-.+.+|...+.+.+....|-.+                .+.++++++.+..+|+....++.+.+.
T Consensus        30 ~Ak~LFP~vG---~~g~t~lRl~~aaLIll~l~RPwr----------------~r~~~~~~~~~~~yGvsLg~MNl~FY~   90 (292)
T COG5006          30 FAKSLFPLVG---AAGVTALRLAIAALILLALFRPWR----------------RRLSKPQRLALLAYGVSLGGMNLLFYL   90 (292)
T ss_pred             HHHHHccccC---hhhHHHHHHHHHHHHHHHHhhHHH----------------hccChhhhHHHHHHHHHHHHHHHHHHH
Confidence            3577775443   566899999988877766554211                123567789999999999999999999


Q ss_pred             hccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee---cCcccchhHHHHHHHHHHHHHHHH
Q 020228          141 SVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA---RDLSFDFFGYAVVFLANITTAIYL  217 (329)
Q Consensus       141 al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~---~~~~~~~~G~~~~l~s~~~~a~~~  217 (329)
                      |++.+|.+.+..+.++.|+.+.+++.    |+  .+....+.+.+.|..+..-   +..+.|+.|..+++.+..|+|.|.
T Consensus        91 si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YI  164 (292)
T COG5006          91 SIERIPLGIAVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYI  164 (292)
T ss_pred             HHHhccchhhhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHH
Confidence            99999999999999999998877662    22  2344455666677766422   223568999999999999999999


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHhccc
Q 020228          218 ATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSI-FLNTTLNS  296 (329)
Q Consensus       218 i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~s  296 (329)
                      +..||.-+  ..+...-+.+...++.++.+|......+       +...+|..+..-+..++++..+-++. ..++++.+
T Consensus       165 v~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp  235 (292)
T COG5006         165 VLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLP  235 (292)
T ss_pred             HHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence            99999986  3455566667777777777776543222       22234554555566777777777766 77899999


Q ss_pred             hhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          297 AVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       297 a~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +-++++.-.++|....+.|++++||.
T Consensus       236 ~~~F~~LlSLePa~aAl~G~i~L~e~  261 (292)
T COG5006         236 ARTFGTLLSLEPALAALSGLIFLGET  261 (292)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence            99999999999999999999999986

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.34  E-value=8.6e-10  Score=97.28  Aligned_cols=255  Identities=13%  Similarity=0.055  Sum_probs=179.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccc--ccccCCCCCccCCCCCccccHH
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKI--INFTMGDSLMTSDSSSTFVPLK  119 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  119 (329)
                      ++|++.++.-+.....+.+.-|.+-.   .| +..+...|.+-+..++.+.....+  .++++     .      ..+++
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-----~------~~~p~   70 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQ-----L------LKQPK   70 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----H------HhCcH
Confidence            35544444444444455677788774   23 677999999988877766544321  11110     0      01123


Q ss_pred             HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcccc
Q 020228          120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFD  199 (329)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~~~  199 (329)
                      .+-.....++....++....+|...-.+=.+..--...|.+.++++.+++|||+++.+++++++..+||..-.....+++
T Consensus        71 ~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp  150 (293)
T COG2962          71 TLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP  150 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            44555666677888888999999998888888889999999999999999999999999999999999999777666777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHH
Q 020228          200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCI  279 (329)
Q Consensus       200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~  279 (329)
                      +..    +.=++.+++|... ||..   +.++.+-......+-.|..+.+....++-.+   +....+...+.++...|.
T Consensus       151 wva----l~la~sf~~Ygl~-RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~  219 (293)
T COG2962         151 WVA----LALALSFGLYGLL-RKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGL  219 (293)
T ss_pred             HHH----HHHHHHHHHHHHH-HHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhH
Confidence            654    4446788899865 4443   4677776666666666666655544333221   111123445677777887


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          280 LAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       280 ~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      .+..--.+-..+-|+.+=.+..+.++.+|....+++++++||.
T Consensus       220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~  262 (293)
T COG2962         220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEP  262 (293)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            7655444445578999999999999999999999999999886

>TIGR00803 nst UDP-galactose transporter

Probab=99.00  E-value=2.2e-09  Score=94.12  Aligned_cols=169  Identities=17%  Similarity=0.196  Sum_probs=116.3

Q ss_pred             cchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc---------------------------c
Q 020228          145 VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------------------------S  197 (329)
Q Consensus       145 ~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~---------------------------~  197 (329)
                      +++|.+...|+..++++++.+....+|+++..++++.+++..|+.....+|.                           .
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            5789999999999999999999999999999999999999999875322111                           1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH-----HH-hCChhhhhccCCccchhHH
Q 020228          198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWT-----FL-RGDLETTINFPYLLSPGFL  271 (329)
Q Consensus       198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-----~~-~ge~~~~~~~~~~~~~~~~  271 (329)
                      ....|....+.+.+++++..++.++..++++.     ++|.+.++.++..+..     .. .++....+.+...++...|
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-----MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW  156 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-----chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence            24677777888888889999999998764432     2455444433332221     11 1111111111111223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          272 VVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       272 ~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ..++.    ......+..+++|+.++.+.+++...+++.+.++|+++|||.
T Consensus       157 ~~~~~----~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~  203 (222)
T TIGR00803       157 IVGLL----NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK  203 (222)
T ss_pred             HHHHH----HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33333    333444567799999999999999999999999999999876

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.77  E-value=2.2e-08  Score=83.29  Aligned_cols=172  Identities=15%  Similarity=0.199  Sum_probs=129.0

Q ss_pred             HHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc--c
Q 020228          120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--S  197 (329)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--~  197 (329)
                      .+++..|++++..+..+....+++.++.+.++.+-.+.-.|+.+++++.+|+++...++++.++.+.|+++.++.|.  .
T Consensus        52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a  131 (290)
T KOG4314|consen   52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA  131 (290)
T ss_pred             eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999987665  4


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH--------HHHHHHHHHHhCC--hhhhhccCCccc
Q 020228          198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVIC--------GPLLLLWTFLRGD--LETTINFPYLLS  267 (329)
Q Consensus       198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~--------~~~l~~~~~~~ge--~~~~~~~~~~~~  267 (329)
                      .++.|+.+++.|+...|+|.++.|+...+.+..  +...+++-++        .+.+.  ...+|-  |++   +.+   
T Consensus       132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G--daa~FmS~LGF~NL~~~~~~~lI--L~~T~VE~~qs---FA~---  201 (290)
T KOG4314|consen  132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFG--DAAHFMSCLGFFNLCFISFPALI--LAFTGVEHLQS---FAA---  201 (290)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHhhhHHH--HHHhchHHHHH---Hhh---
Confidence            579999999999999999999999998754333  2222322222        22111  122332  221   111   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 020228          268 PGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTI  302 (329)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si  302 (329)
                       ..|..++..+.+....|+.....+..+.|...|+
T Consensus       202 -~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISi  235 (290)
T KOG4314|consen  202 -APWGCLCGAAGLSLAFNFLINFGIALLNPILISI  235 (290)
T ss_pred             -CCchhhhhHHHHHHHHhhheeehhhhhchhhhee
Confidence             1156666666666667777666677777766654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.76  E-value=3e-08  Score=78.11  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=91.8

Q ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHH-HHHHHHH
Q 020228           59 VMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVA-YLLYMVV  137 (329)
Q Consensus        59 ~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  137 (329)
                      ...+|...++  +| |...+++|+..+.+ +.+.......+.+            .+.+.+++......+++ ..+...+
T Consensus         7 ~~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    7 SVFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKPF------------KNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             HHHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhccccc------------cCCChhhhhhhhHhhccceehHHHH
Confidence            4467988875  45 77899999999986 4433322111100            11244556677777776 5888999


Q ss_pred             hhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228          138 SVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA  191 (329)
Q Consensus       138 ~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~  191 (329)
                      .+.++++.+++..+++..+.|+++.+++++++||+++++++.+++++++|+.+.
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.73  E-value=2.1e-08  Score=78.28  Aligned_cols=76  Identities=11%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             HHHHhHHHHHHH-HHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcc
Q 020228          121 LMHTLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS  197 (329)
Q Consensus       121 ~~~~~~~~~~~~-~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~  197 (329)
                      +......+++.. ....+.+.|+++.| +....+.++.|+++++++.+++|||++++++.+++++++|+++...+|.+
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            445556566554 88889999999999 68889999999999999999999999999999999999999998877754

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.56  E-value=6.6e-08  Score=83.56  Aligned_cols=235  Identities=11%  Similarity=0.039  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHH
Q 020228           55 AVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLY  134 (329)
Q Consensus        55 s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (329)
                      ..+..+.+.++-.. +.+.|..=++.....-.++-..+..+++ +                .-.-.+++.+.+++.-.-.
T Consensus        30 ~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~----------------~~~~~~~hYilla~~DVEa   91 (336)
T KOG2766|consen   30 ITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-K----------------YIKAKWRHYILLAFVDVEA   91 (336)
T ss_pred             HHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-H----------------HHHHHHHHhhheeEEeecc
Confidence            33444556666653 5677876665555444444433333221 1                0112356677777666556


Q ss_pred             HHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCc--------ccchhHHHHH
Q 020228          135 MVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--------SFDFFGYAVV  206 (329)
Q Consensus       135 ~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~--------~~~~~G~~~~  206 (329)
                      .++-..|.||++....+.+-+-..+.+++++++++|.|+.+.++.++++-+.|+.+...+|.        +....|.++.
T Consensus        92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lv  171 (336)
T KOG2766|consen   92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLV  171 (336)
T ss_pred             cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEE
Confidence            66777899999999999999999999999999999999999999999999999998765443        2347899999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHHHHHH
Q 020228          207 FLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNY  286 (329)
Q Consensus       207 l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (329)
                      ++++-++|..++..+.+.+  +.+..+++....+++.++..+=.+ .+. ... ..-+ ++.. ....+...++-|...-
T Consensus       172 i~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ~i-~~~-~~~-~tl~-w~~~-i~~yl~f~L~MFllYs  244 (336)
T KOG2766|consen  172 IAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQFI-FER-HHV-STLH-WDSA-IFLYLRFALTMFLLYS  244 (336)
T ss_pred             EecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHh-hhc-cce-eeEe-ehHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999988  568889888888877776654322 111 111 0011 1111 1112222222222222


Q ss_pred             HHHHHHhccchhHHHHhhchhhHHHHHH
Q 020228          287 SIFLNTTLNSAVTQTICGNLKVCFPTTL  314 (329)
Q Consensus       287 ~~~~~i~~~sa~t~si~~~~k~i~~~~~  314 (329)
                      ..=..+|.+|++.+++--.....+++++
T Consensus       245 l~pil~k~~~aT~~nlslLTsDmwsl~i  272 (336)
T KOG2766|consen  245 LAPILIKTNSATMFNLSLLTSDMWSLLI  272 (336)
T ss_pred             hhHHheecCCceEEEhhHhHHHHHHHHH
Confidence            2235688999998888877888888777

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.53  E-value=8e-07  Score=68.97  Aligned_cols=131  Identities=15%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-cccccccCCCCCccCCCCCccccHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRR-WKIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      +++++++|+..    .+..|.-+.+.  + |.+=+..|.++..+.+..... .|+.+.+            ..++.|.+.
T Consensus         8 ALLsA~fa~L~----~iF~KIGl~~v--d-p~~At~IRtiVi~~~l~~v~~~~g~~~~~------------~~~~~k~~l   68 (140)
T COG2510           8 ALLSALFAGLT----PIFAKIGLEGV--D-PDFATTIRTIVILIFLLIVLLVTGNWQAG------------GEIGPKSWL   68 (140)
T ss_pred             HHHHHHHHHHH----HHHHHHhcccc--C-ccHHHHHHHHHHHHHHHHHHHhcCceecc------------cccCcceeh
Confidence            45556666544    44679888744  4 778899999988877766543 3333221            113444555


Q ss_pred             HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      ....-|+.-..++.+.+.|++.-++|-..-+-.++|+++.+++.+++||+++.++++++.++.+|+.+.+.
T Consensus        69 flilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          69 FLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            56666777888999999999999999999999999999999999999999999999999999999988653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.43  E-value=8.6e-06  Score=72.80  Aligned_cols=132  Identities=13%  Similarity=0.043  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      ++...+++-..+........|....+.+ +.+..+..+++..+.+++.+.......+    .          ..+.+++.
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~----------~~~~~~~~  192 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEG-PELLQFTGWVLLLGALLLLPFAWFLGPN----P----------QALSLQWG  192 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHhcCCC----C----------CcchHHHH
Confidence            3433333333333444556788886543 2234455577888877766654431111    0          01344555


Q ss_pred             HHhHHHHH-HHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhe
Q 020228          123 HTLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF  189 (329)
Q Consensus       123 ~~~~~~~~-~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~  189 (329)
                      ..+..+++ ......+.+.++++.+++...++..+.|++.+++++++++|+++..++.++.+++.|+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       193 ALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            56666665 46778899999999999999999999999999999999999999999999999999863

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.37  E-value=5e-05  Score=67.67  Aligned_cols=193  Identities=11%  Similarity=0.064  Sum_probs=141.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchh----hhhhhhhhheeeee
Q 020228          119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVG----SVGLIILGAFVAGA  193 (329)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~----sv~~~~~Gv~l~~~  193 (329)
                      +.+..-+.-|++.++.+.....|.+++.+|...-+ -....+.+.+.++++++|..+..++.    +++++++|+.+.+.
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            44555667778999999999999999988866655 46788889999999999998877664    88889999999776


Q ss_pred             cCcc--------cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCc
Q 020228          194 RDLS--------FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYL  265 (329)
Q Consensus       194 ~~~~--------~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~  265 (329)
                      .|.+        ....|+...+++.+.+..|.+..|-.    +.++++..+=+.+-......++....++  +.      
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~~--~~------  190 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSKK--PF------  190 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcccc--cc------
Confidence            5432        22579999999999999999997663    4688877765544333333333222211  11      


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCcc
Q 020228          266 LSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGL  324 (329)
Q Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~  324 (329)
                      .+... +.-+.+|++=-..|++.+...+..+..+.=..+.+..+.+.+.|.+++||.+-
T Consensus       191 ~~k~~-~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt  248 (269)
T PF06800_consen  191 FEKKS-WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT  248 (269)
T ss_pred             cccch-HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCc
Confidence            11111 23355666666778888888888888888888889999999999999999864

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.25  E-value=1.7e-05  Score=61.69  Aligned_cols=119  Identities=13%  Similarity=0.044  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH
Q 020228          203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF  282 (329)
Q Consensus       203 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~  282 (329)
                      .+|++++++++++-.++.|-=++  +.||..-+..-++....++..+...+|.++.    +...++..|..++++|+.+.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~----~~~~~~k~~lflilSGla~g   78 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQA----GGEIGPKSWLFLILSGLAGG   78 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceec----ccccCcceehhhhHHHHHHH
Confidence            58999999999999999888777  6688877777788888888888788888653    22234566888999998888


Q ss_pred             HHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC-ccccc
Q 020228          283 FLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF-GLHTY  327 (329)
Q Consensus       283 ~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~-~~~~~  327 (329)
                      ..-.+-|++++.-.+.......-..++.++++|++++||. +..+|
T Consensus        79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~  124 (140)
T COG2510          79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTW  124 (140)
T ss_pred             HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHH
Confidence            8777889999999999999999999999999999999875 44443

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.03  E-value=1.8e-05  Score=61.47  Aligned_cols=64  Identities=19%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228          129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG  192 (329)
Q Consensus       129 ~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~  192 (329)
                      +++....++...+++.+|++.+..+.++.++++.+.+++++||++++++++++.++++|+++.+
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4567788899999999999999999999999999999999999999999999999999998754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.01  E-value=0.00017  Score=58.92  Aligned_cols=141  Identities=12%  Similarity=0.063  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHH
Q 020228           49 ISYMACAVLLVMFNKAALSS-----YNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        49 ~~~~~~s~~~~~~nK~ll~~-----~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      +....++..-....|..+.+     .+.+ +..+..+....+.+.+.+.... +..+..+... .. ...+...+.+.+.
T Consensus         6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~-~~-~~~~~~~~~~~~~   82 (153)
T PF03151_consen    6 LASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFS-EI-FGEELSSDPNFIF   82 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-Hh-hhhhhcchHHHHH
Confidence            33334444445566777776     4555 5566666666666666655332 2111100000 00 0000000224455


Q ss_pred             HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228          123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG  192 (329)
Q Consensus       123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~  192 (329)
                      .++..+++.....+.++..+++++.-+++++.....+.+.+++.++++|+++..++.++.+.+.|+.+.+
T Consensus        83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            5566667777888899999999999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.96  E-value=3.7e-05  Score=60.25  Aligned_cols=104  Identities=21%  Similarity=0.194  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHH-HHHHHHHH
Q 020228          211 ITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA-FFLNYSIF  289 (329)
Q Consensus       211 ~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~  289 (329)
                      +++|.+.+..|+..+  +.++....++....+.+ +++.....+...     ....++..+......+.++ ...+...+
T Consensus         1 ~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLYF   72 (126)
T ss_pred             ceeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhcccc-----ccCCChhhhhhhhHhhccceehHHHHHH
Confidence            357888999999988  47999999999998887 555544433322     1112233345556666664 66666678


Q ss_pred             HHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          290 LNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       290 ~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      .+++++++...++..+++++.+.+++++++||.
T Consensus        73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~  105 (126)
T PF00892_consen   73 YALKYISASIVSILQYLSPVFAAILGWLFLGER  105 (126)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            899999999999999999999999999999876

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.88  E-value=0.00037  Score=63.83  Aligned_cols=123  Identities=9%  Similarity=-0.037  Sum_probs=90.1

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHH
Q 020228          195 DLSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVL  274 (329)
Q Consensus       195 ~~~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l  274 (329)
                      |.+....|+++.++++++++...+..|.. .  +.++.++.++...++.+.+.+.....++.....+.  ..++..+...
T Consensus         2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~   76 (296)
T PRK15430          2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQKIFML   76 (296)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHHHHHH
Confidence            33445689999999999999999999764 4  58999999999999887776665444443221110  0122223333


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       275 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ...+++....+.+.+++++++++...++..+..|+.+.++++++++|.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~  124 (296)
T PRK15430         77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER  124 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344444455566668899999999999999999999999999999876

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.88  E-value=0.00032  Score=65.89  Aligned_cols=122  Identities=11%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhh
Q 020228           61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE  140 (329)
Q Consensus        61 ~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  140 (329)
                      ..|....+  +|.+...++++.++..+...+.....  + +. +.    +......+... ..++-.++.-.+...++|.
T Consensus       207 l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~--~-~~-~~----~~~~~~~~~~~-~~i~y~~i~t~lay~lw~~  275 (358)
T PLN00411        207 LQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVV--E-KN-NP----SVWIIHFDITL-ITIVTMAIITSVYYVIHSW  275 (358)
T ss_pred             HHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHH--c-cC-Cc----ccceeccchHH-HHHHHHHHHHHHHHHHHHH
Confidence            45666653  46566778888877766554433220  0 00 00    00000012221 1223333444556778999


Q ss_pred             hccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          141 SVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       141 al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      ++++.+++...+...+.|++.+++++++++|+++..++++.++++.|+.+...
T Consensus       276 ~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        276 TVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988654

>TIGR00688 rarD rarD protein

Probab=97.81  E-value=0.0005  Score=61.44  Aligned_cols=119  Identities=13%  Similarity=0.050  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhh-ccCCccchhHHHHHHHHHH
Q 020228          201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTI-NFPYLLSPGFLVVLCFSCI  279 (329)
Q Consensus       201 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~-~~~~~~~~~~~~~l~~~~~  279 (329)
                      .|+++.++++++++...+..|. ..  +.++.++.++-..++.+.+.++....++..... +.........+..+...++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            4899999999999999999987 44  489999999999998877766554444322110 1111111112344566676


Q ss_pred             HHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          280 LAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       280 ~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +......+.+.+++++++...++..+..|+.+.++++++++|.
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek  121 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER  121 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6666666778899999999999999999999999999999876

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.77  E-value=0.00048  Score=62.88  Aligned_cols=109  Identities=13%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHH-HHHHHHHhhhhccccchhHHHH
Q 020228           74 ANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVA-YLLYMVVSVESVRGVNVPMYTT  152 (329)
Q Consensus        74 p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~al~~~~vs~~~i  152 (329)
                      +...+.+|+..+.+.+.+...... ...           ....+.+.+..+...+++ ..+...+.+.++++.+.+...+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~  244 (292)
T PRK11272        177 GMMAGAAEMLAAGVVLLIASLLSG-ERL-----------TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATS  244 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcC-Ccc-----------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            445677888888776655543210 000           000133455566666665 4567779999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec
Q 020228          153 LRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR  194 (329)
Q Consensus       153 l~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~  194 (329)
                      +..+.|++.+++++++++|+++..++.+..+++.|+.+....
T Consensus       245 ~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        245 YAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999886543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.71  E-value=0.0007  Score=61.98  Aligned_cols=195  Identities=12%  Similarity=0.063  Sum_probs=111.3

Q ss_pred             HHhHHHH-HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee-c-C-c-c
Q 020228          123 HTLPLAV-AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA-R-D-L-S  197 (329)
Q Consensus       123 ~~~~~~~-~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~-~-~-~-~  197 (329)
                      ..+..|+ .+.++...+..|+.+.|.+..+-+.+...++..+++..++|||++++.+.++.+++.|..+... + + . .
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~  130 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPI  130 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCc
Confidence            3355554 4567778999999999999999999999999999999999999999999999999999987532 1 1 1 0


Q ss_pred             cc------------hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH---HHHHHHHHHHHHHhCChhhhh-c
Q 020228          198 FD------------FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNG---VICGPLLLLWTFLRGDLETTI-N  261 (329)
Q Consensus       198 ~~------------~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~---~~~~~~l~~~~~~~ge~~~~~-~  261 (329)
                      .+            ...+....... ...+.....+|.      ....++.|..   .++..-.+..-....-..... .
T Consensus       131 ~t~~~l~~~~~~~~fl~y~~~~~~~-~~~L~~~~~~r~------g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g  203 (300)
T PF05653_consen  131 HTLDELIALLSQPGFLVYFILVLVL-ILILIFFIKPRY------GRRNILVYISICSLIGSFTVLSAKAISILIKLTFSG  203 (300)
T ss_pred             CCHHHHHHHhcCcceehhHHHHHHH-HHHHHHhhcchh------cccceEEEEEEeccccchhhhHHHHHHHHHHHHhcC
Confidence            11            11121111111 111111111111      1111222322   222111111000000000000 0


Q ss_pred             cCCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhch-hhHHHHHHHHhhhcCCcc
Q 020228          262 FPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNL-KVCFPTTLHIAIATNFGL  324 (329)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~-k~i~~~~~s~~~f~~~~~  324 (329)
                      .++..++..|..++....++....+..+.++++.++.....+.+. =...+++-|.++|+|..-
T Consensus       204 ~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~  267 (300)
T PF05653_consen  204 DNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSR  267 (300)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhccccc
Confidence            112234556766666666666777777889998887665554443 344566667778887643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.64  E-value=0.0014  Score=59.98  Aligned_cols=131  Identities=14%  Similarity=0.148  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH  123 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (329)
                      +.+.+++-..+........|....++  + |.... ++.+.+.+.+........   +  +.         ..+++.+..
T Consensus       149 G~ll~l~aa~~~a~~~v~~r~~~~~~--~-~~~~~-~~~~~~~~~l~~~~~~~~---~--~~---------~~~~~~~~~  210 (293)
T PRK10532        149 GAALALGAGACWAIYILSGQRAGAEH--G-PATVA-IGSLIAALIFVPIGALQA---G--EA---------LWHWSILPL  210 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccC--C-chHHH-HHHHHHHHHHHHHHHHcc---C--cc---------cCCHHHHHH
Confidence            33334444444444455667776543  3 44443 455555444444332211   0  00         012333333


Q ss_pred             HhHHHHH-HHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228          124 TLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG  192 (329)
Q Consensus       124 ~~~~~~~-~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~  192 (329)
                      .+..+++ ..+...+.|.++++.+.+...++-.+.|++..++++++++|+++..++++..+++.|++...
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4455655 35566689999999999999999999999999999999999999999999999999988864

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.60  E-value=0.0014  Score=60.00  Aligned_cols=75  Identities=13%  Similarity=0.098  Sum_probs=65.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228          118 LKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG  192 (329)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~  192 (329)
                      .+.+-.++..++...+...+++.++++.+++...+.-.+.|++..++++++++|+++..++.+.++++.|+.+..
T Consensus       212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence            444555555555556678899999999999999999999999999999999999999999999999999987753

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.58  E-value=0.0017  Score=59.56  Aligned_cols=78  Identities=12%  Similarity=0.038  Sum_probs=65.9

Q ss_pred             cHHHHHHHhHHHHH-HHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeec
Q 020228          117 PLKTLMHTLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR  194 (329)
Q Consensus       117 ~~~~~~~~~~~~~~-~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~  194 (329)
                      +.+.+..++-.+++ ..+...+.+.++++.+......+..+.|++..++++++++|+++..++++..++++|+.+...+
T Consensus       210 ~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        210 DMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            34555556666654 3466779999999999999999999999999999999999999999999999999999875443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.44  E-value=0.0011  Score=60.71  Aligned_cols=145  Identities=17%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      |.+.+++...+........|....+.+.+ |..++.+|+..+.+.+.+.... ......+.+. .  + ...........
T Consensus       146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~  220 (302)
T TIGR00817       146 GFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGF-M--Q-AISGVNVTKIY  220 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHH-H--H-hhcccCchHHH
Confidence            44444444444444455677777633444 6678899998887777665432 1100000000 0  0 00000000011


Q ss_pred             H-HhHHHH-HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          123 H-TLPLAV-AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       123 ~-~~~~~~-~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      . .+..++ ++.....+.+.+++++++.++.+.-...|++++++++++++|+++..++++..+++.|+.+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            1 112222 2222334666899999999999999999999999999999999999999999999999988653

specificities overlap.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.41  E-value=0.00047  Score=54.96  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=61.9

Q ss_pred             hHHH-HHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHH--HhCcccCccchhhhhhhhhhheeeeecC
Q 020228          125 LPLA-VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYF--LAGQKYTPPVVGSVGLIILGAFVAGARD  195 (329)
Q Consensus       125 ~~~~-~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~--~~~e~~~~~~~~sv~~~~~Gv~l~~~~~  195 (329)
                      +..+ +++.+..++++.+++..|++.+..+.+..++.+.+.++.  ++||+++..+++++.++++|+.+...++
T Consensus        51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            3344 467888999999999999999999999999888888884  8999999999999999999999876543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.38  E-value=0.0042  Score=56.33  Aligned_cols=112  Identities=8%  Similarity=0.005  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH
Q 020228          203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF  282 (329)
Q Consensus       203 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~  282 (329)
                      +++.+++++++|.+.+..|+..++  .++.  .++....+.+.+.++....+.. ..+..+   +...|..++..++...
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~   74 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQ-VGWSRL---PATFWLLLAISAVANM   74 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhccc-CCCCCc---chhhHHHHHHHHHHHH
Confidence            467899999999999999988764  2333  3555555666665654432110 111111   1223445566777777


Q ss_pred             HHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          283 FLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       283 ~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      ....+.+.+.++.++...++..+..++.+.+++++++||.
T Consensus        75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~  114 (281)
T TIGR03340        75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET  114 (281)
T ss_pred             HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC
Confidence            7788888899999999999999999999999999999986

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.23  E-value=0.0008  Score=52.75  Aligned_cols=70  Identities=10%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             HhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      .....+++.++.++...+++++|++.+..+ .....+.+.+.+.++++|+++..+++++.++++|+.....
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            445567788899999999999999988777 5699999999999999999999999999999999988643

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.18  E-value=0.0096  Score=55.88  Aligned_cols=145  Identities=14%  Similarity=0.070  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHHHHHHHcc-cccccC-CCCCccCCCCCccc
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYN-----FPCANVITLLQMISSCSFLYFLRRWK-IINFTM-GDSLMTSDSSSTFV  116 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~-----f~~p~~l~~~q~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~  116 (329)
                      |.+.+++-..+...-....|.++.+.+     .+ +..+..++...+.+++.+..... ..+... .+..   .......
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~---~~~~~~~  270 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNY---TANMTNY  270 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hhccccc
Confidence            444444445555555667788886542     22 33456666777776666543311 000000 0000   0000000


Q ss_pred             cH-HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228          117 PL-KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG  192 (329)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~  192 (329)
                      .+ ..+..++.-++.+.+.....+.++++++..++++.-.+.|+++.+++.++++|+++..++++.++++.|+.+.+
T Consensus       271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            11 11112222223333333344469999999999999999999999999999999999999999999999998753

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.03  E-value=0.012  Score=53.74  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=90.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH----HHHHHHHHHHHcccccccCCCCCccCCCCCcccc
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMI----SSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVP  117 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (329)
                      ++++...++-+.+.......+|+..  +  + |...++.|..    .+.+..... +    +.+   +          .+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~--~-~~~~~~~~~~g~~~~~~~~~~~~-~----~~~---~----------~~  207 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFG--V--D-GLSVLLPQAIGMVIGGIIFNLGH-I----LAK---P----------LK  207 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC--C--C-cceehhHHHHHHHHHHHHHHHHH-h----ccc---c----------hH
Confidence            4566666666666666677788652  2  2 5556666665    333333332 1    101   0          01


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhhhcc-ccchhHHHHHHhHHHHHHHHHHHHHhCcccCccch----hhhhhhhhhheeee
Q 020228          118 LKTLMHTLPLAVAYLLYMVVSVESVR-GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVV----GSVGLIILGAFVAG  192 (329)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~n~al~-~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~----~sv~~~~~Gv~l~~  192 (329)
                      .+.....+..|++..+...+...+++ +.+++.+.++-...|+...+.+++++||+.+++++    .+.++++.|+.+..
T Consensus       208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            22233444477777777778889999 99999999999999999999999999999999999    99999999987753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.97  E-value=0.0026  Score=48.64  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             HhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228          124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA  191 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~  191 (329)
                      ....-+++..+.++-..+++.+|++.+-.+ -....+.+.+.+++++||+.++.+++++.++++|++..
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            344456788888899999999999977666 55899999999999999999999999999999999875

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.97  E-value=0.0022  Score=49.50  Aligned_cols=68  Identities=12%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhhhhccccchhHHHHHH-hHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          126 PLAVAYLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       126 ~~~~~~~~~~~~~n~al~~~~vs~~~il~-s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      ..-+++.+..++...+++.+|++.+..+. ....+.+.+.+.+++||++++.++.++.++++|++....
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34566788888889999999999888885 489999999999999999999999999999999988643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.93  E-value=0.016  Score=53.17  Aligned_cols=142  Identities=11%  Similarity=0.112  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-ccccccCCCCCccCCCCCccccHHHHH
Q 020228           44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        44 ~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      |....+++..+........|.++.+++.+ +..+.++..+.+.+...+.... ...+..+..+.      .. ...+.+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f------~~-~~p~~~~  226 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF------IS-AHPSVLL  226 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH------HH-HhHHHHH
Confidence            77777777777777788899999888765 5667777666666655544332 00011100000      00 0123456


Q ss_pred             HHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      .++..+++....+.+-+...+..+.-+.+++..+.-+++.+++.+++++++++..|.++++++.|..+-..
T Consensus       227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            67777777777777788888999999999999999999999999999999999999999999999987543

; GO: 0055085 transmembrane transport

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.92  E-value=0.031  Score=50.12  Aligned_cols=77  Identities=18%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             cHHHHHHHhHHHHHHH-HHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          117 PLKTLMHTLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       117 ~~~~~~~~~~~~~~~~-~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      +.+++......+++.. ....+.+.+++..+++....+..+.|++.++.++++++|+++..++.+..+++.|+.+...
T Consensus       210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            3455667777777665 5888999999999999999999999999999999999999999999999999999987543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.0022  Score=48.74  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=59.8

Q ss_pred             HHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeee
Q 020228          123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG  192 (329)
Q Consensus       123 ~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~  192 (329)
                      .....-+++..+..+-..|++++|++.+-.+ -....+.+.+.+++++||+.+..+++++.+++.|+....
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            3344456778888899999999999976655 668899999999999999999999999999999998753

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.88  E-value=0.0032  Score=48.50  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=58.4

Q ss_pred             HhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228          124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA  191 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~  191 (329)
                      .....+++.++.++-..+++++|++.+-.+ -....+.+.+.+.+++||++++.+++++.+++.|+...
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            344456677888899999999999977666 55889999999999999999999999999999999764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.73  E-value=0.024  Score=50.75  Aligned_cols=119  Identities=14%  Similarity=0.123  Sum_probs=94.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHH
Q 020228          198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFS  277 (329)
Q Consensus       198 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~  277 (329)
                      .+..|+++++.+.+.+++.-.+.|-+.   +.++.|+..+-.+++.++++......+.+.+.++  ...+|..+..+.++
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~~~~~l~   78 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTLLMLALT   78 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHHHHHHHH
Confidence            345899999999999999998887664   5799999999999999999888777777776655  23455555555555


Q ss_pred             HHHHHHHHHHHH-HHHhccchhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          278 CILAFFLNYSIF-LNTTLNSAVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       278 ~~~~~~~~~~~~-~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +.. ...|+..| +++.+-..+..|.=-...|.+.+++|.++++|.
T Consensus        79 a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr  123 (293)
T COG2962          79 ALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER  123 (293)
T ss_pred             HHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            544 34566664 688998999999999999999999999999985

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.014  Score=52.89  Aligned_cols=195  Identities=10%  Similarity=-0.003  Sum_probs=112.7

Q ss_pred             HHhHHHH-HHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecCcc----
Q 020228          123 HTLPLAV-AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS----  197 (329)
Q Consensus       123 ~~~~~~~-~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~~~----  197 (329)
                      +.+..|+ .+.+.-..++.|+.+.|.+..+-+-++..+..++++..+++||++....+++.+.++|..+.+....+    
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i  144 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI  144 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence            3444554 47788889999999999999999999999999999999999999999999999999999886543211    


Q ss_pred             ----------cchhHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH--hCC-hhh-hhcc
Q 020228          198 ----------FDFFGY-AVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFL--RGD-LET-TINF  262 (329)
Q Consensus       198 ----------~~~~G~-~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~ge-~~~-~~~~  262 (329)
                                .+ .|+ ++..+-.+...+-..+.+     .+.....++.|..+.+....+-....  .|+ ... ....
T Consensus       145 ~t~~el~~~~~~-~~Fliy~~~iil~~~il~~~~~-----p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~  218 (335)
T KOG2922|consen  145 ESVEEVWELATE-PGFLVYVIIIILIVLILIFFYA-----PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN  218 (335)
T ss_pred             ccHHHHHHHhcC-ccHHHHHHHHHHHHHHHheeec-----ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC
Confidence                      11 121 111111111111111111     12233344445544443321110000  000 000 0112


Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhh-chhhHHHHHHHHhhhcCCc
Q 020228          263 PYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICG-NLKVCFPTTLHIAIATNFG  323 (329)
Q Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~-~~k~i~~~~~s~~~f~~~~  323 (329)
                      ++...|..|..+.....|.....--.+.+.+...+...+.+. .+=+.+++..|.++|+|-.
T Consensus       219 ~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~  280 (335)
T KOG2922|consen  219 NQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWS  280 (335)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence            333445566666666666555444456777766555544444 3456667777777777643

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.62  E-value=0.36  Score=45.00  Aligned_cols=102  Identities=12%  Similarity=0.097  Sum_probs=79.0

Q ss_pred             cHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCccc---Cc----cchhhhhhhhhhh
Q 020228          117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKY---TP----PVVGSVGLIILGA  188 (329)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~---~~----~~~~sv~~~~~Gv  188 (329)
                      +.+.+..-+.-|++..+.+.....+++++.+|...-+ -.+..++..++..++++|..   +.    ....+++++++|+
T Consensus        69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi  148 (345)
T PRK13499         69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV  148 (345)
T ss_pred             CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence            3445556667778889999999999999999977766 56888889999999998754   22    3457888888999


Q ss_pred             eeeee----cCc---------ccchhHHHHHHHHHHHHHHHHH
Q 020228          189 FVAGA----RDL---------SFDFFGYAVVFLANITTAIYLA  218 (329)
Q Consensus       189 ~l~~~----~~~---------~~~~~G~~~~l~s~~~~a~~~i  218 (329)
                      ++.+.    .|.         .....|+++++++.+.++.|..
T Consensus       149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence            88655    322         1236999999999999999983

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.38  E-value=0.011  Score=44.27  Aligned_cols=58  Identities=14%  Similarity=0.179  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhh
Q 020228          127 LAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLI  184 (329)
Q Consensus       127 ~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~  184 (329)
                      .-+++.++.++...+++++|++.+-.+ .....+.+.+.+.+++||+++..++.++.++
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            334788888999999999999987554 6699999999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.16  E-value=0.14  Score=47.63  Aligned_cols=71  Identities=18%  Similarity=0.299  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC
Q 020228          125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD  195 (329)
Q Consensus       125 ~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~  195 (329)
                      ...+++......+....++..++....+--.++.++.++++.+++|+++++..+++.+++++|.++....+
T Consensus       237 v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  237 VGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            33444433444455677888888888888899999999999999999999999999999999999976543

Some of the sequences in this family are annotated as putative membrane proteins.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.87  E-value=0.023  Score=43.94  Aligned_cols=70  Identities=11%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             HHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheee
Q 020228          121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA  191 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~  191 (329)
                      ++...|+.+=.+ .....+..+...|+|.+.-+ .+++-++|.+.++++++|..+++++.++++++.|+.++
T Consensus        42 ~~y~ipf~lNq~-GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   42 PKYIIPFLLNQS-GSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            355566655444 34567788999999988877 59999999999999888889999999999999999875

Many members are annotated as potential transmembrane proteins.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.71  E-value=0.19  Score=45.08  Aligned_cols=100  Identities=17%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH
Q 020228           74 ANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL  153 (329)
Q Consensus        74 p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il  153 (329)
                      |+...+=|.+--.+...++......++.               +++ -.+-...|+++.....+...|.+.+.++..-.+
T Consensus       164 ~~~~~lPqaiGm~i~a~i~~~~~~~~~~---------------~k~-~~~nil~G~~w~ignl~~~is~~~~G~a~af~l  227 (269)
T PF06800_consen  164 GWSAFLPQAIGMLIGAFIFNLFSKKPFF---------------EKK-SWKNILTGLIWGIGNLFYLISAQKNGVATAFTL  227 (269)
T ss_pred             hhHhHHHHHHHHHHHHHHHhhccccccc---------------ccc-hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhH
Confidence            6677777877776666666543311110               111 223355688899999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhCcccCccchh----hhhhhhhhhe
Q 020228          154 RRTTVAFTMIMEYFLAGQKYTPPVVG----SVGLIILGAF  189 (329)
Q Consensus       154 ~s~~pv~~~l~~~~~~~e~~~~~~~~----sv~~~~~Gv~  189 (329)
                      ..+.++.-.+.+.+++||+-+++++.    +++++++|.+
T Consensus       228 SQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  228 SQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            99999999999999999998888664    3444444443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=94.92  E-value=0.24  Score=38.23  Aligned_cols=80  Identities=16%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH-HHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHh
Q 020228          239 GVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF-FLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIA  317 (329)
Q Consensus       239 ~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~  317 (329)
                      ..++.+.+.......++..+.++.....   .+...+..|+++. ......+.+.++.++ ..++...+.++++.++|++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    5 YLFSVLFLLIILLIRGRLRDLFRALRRK---PWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555556554433211111   1344555666665 444445778999985 7778899999999999999


Q ss_pred             hhcCC
Q 020228          318 IATNF  322 (329)
Q Consensus       318 ~f~~~  322 (329)
                      +|+|.
T Consensus        81 ~~~er   85 (113)
T PF13536_consen   81 FFKER   85 (113)
T ss_pred             HhcCC
Confidence            99985

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=94.31  E-value=0.92  Score=40.04  Aligned_cols=130  Identities=14%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHH
Q 020228           43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM  122 (329)
Q Consensus        43 ~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (329)
                      .++..++.-+.|........|-+-+..  + ...=+..-+.++.++...+.....      .        +...++..+-
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~-g~~g~a~gm~vAaviv~Pig~~~a------g--------~~l~~p~ll~  210 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRAE--H-GTAGVAVGMLVAALIVLPIGAAQA------G--------PALFSPSLLP  210 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhcccC--C-CchHHHHHHHHHHHHHhhhhhhhc------c--------hhhcChHHHH
Confidence            344444555555555444555554311  2 223445556666555554432110      0        0111222233


Q ss_pred             HHhHHHHHHHH-HHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhe
Q 020228          123 HTLPLAVAYLL-YMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF  189 (329)
Q Consensus       123 ~~~~~~~~~~~-~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~  189 (329)
                      --+.++++.+. -..+...+++..|.+.+.++-++-|.+-++.+.++++|.++..+|.++..++.+.+
T Consensus       211 laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         211 LALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            33334444333 34489999999999999999999999999999999999999999999988877665

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=93.87  E-value=0.12  Score=45.71  Aligned_cols=71  Identities=11%  Similarity=0.023  Sum_probs=60.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhe
Q 020228          119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF  189 (329)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~  189 (329)
                      +++.-+.-+|++..+.+.+-..++|.--++-..+.+.+-.++..+.+.+++++.+++..|.+.++++...+
T Consensus       251 kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v  321 (346)
T KOG4510|consen  251 KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV  321 (346)
T ss_pred             cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence            34455677789989999999999999999999999999999999999999999999999988776654433

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.79  E-value=0.0065  Score=52.93  Aligned_cols=194  Identities=11%  Similarity=0.086  Sum_probs=127.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccch----hhhhhhhhhheeee
Q 020228          118 LKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVV----GSVGLIILGAFVAG  192 (329)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~----~sv~~~~~Gv~l~~  192 (329)
                      .+.+..-+.-|++.+..+.....|.+++.+|-+.-+ ..+..+-+.+++.+.++|..+..+.    .+++++++|+.+.+
T Consensus        56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs  135 (288)
T COG4975          56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS  135 (288)
T ss_pred             hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence            333444455567888999999999999988876655 4467788899999999999877665    57888999999987


Q ss_pred             ecCc--------ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCC
Q 020228          193 ARDL--------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPY  264 (329)
Q Consensus       193 ~~~~--------~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~  264 (329)
                      ..|.        +.--.|+...+.|.+.+..|.+..|..    +.+.+....-+..-.....+......+|..       
T Consensus       136 ~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~~~~~~-------  204 (288)
T COG4975         136 KQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFFKMEKR-------  204 (288)
T ss_pred             eeccccccccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhcccccc-------
Confidence            7653        112478888889999999998887655    345555443333322222222222222211       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhchhhHHHHHHHHhhhcCCcc
Q 020228          265 LLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKVCFPTTLHIAIATNFGL  324 (329)
Q Consensus       265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~~k~i~~~~~s~~~f~~~~~  324 (329)
                       .+-.. +.-...|+.=...|...+.+.++.+-.|.=....+.-+.+++-|.++++|.+-
T Consensus       205 -~~K~t-~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt  262 (288)
T COG4975         205 -FNKYT-WLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT  262 (288)
T ss_pred             -hHHHH-HHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence             11122 23455666666677777777766664443334556677888888888888753

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=93.08  E-value=2.3  Score=34.18  Aligned_cols=103  Identities=18%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccchhHHHHHHHHHHHHH
Q 020228          203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF  282 (329)
Q Consensus       203 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~~~l~~~~~~~~  282 (329)
                      .++++++.++-+++.....++.++.+ +++.-.+.+...+...+.......++. +..+   ..+.+ | +....|++|.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~---~~~~p-~-w~~lGG~lG~   75 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLAS---LSSVP-W-WAYLGGLLGV   75 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccch---hccCC-h-HHhccHHHHH
Confidence            56788888999999988888877543 588888888888888777776666553 1111   11111 2 2334899998


Q ss_pred             HHHHHHHHHHhccchhHHHHhhchhhHHHH
Q 020228          283 FLNYSIFLNTTLNSAVTQTICGNLKVCFPT  312 (329)
Q Consensus       283 ~~~~~~~~~i~~~sa~t~si~~~~k~i~~~  312 (329)
                      ..-.+....+.+.++.........-.+...
T Consensus        76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s  105 (138)
T PF04657_consen   76 FFVLSNIILVPRLGAALTTILIVAGQLIAS  105 (138)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            888888889999998887776655554443

>TIGR00803 nst UDP-galactose transporter

Probab=92.42  E-value=1.5  Score=38.02  Aligned_cols=67  Identities=10%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhee
Q 020228          124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV  190 (329)
Q Consensus       124 ~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l  190 (329)
                      .+.+.+..++...+-...++|.+.-+..+.-.+.++++.+++.++++++++...+.+..+++.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3344455666677888999999999999999999999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=88.93  E-value=3.5  Score=38.53  Aligned_cols=116  Identities=16%  Similarity=0.116  Sum_probs=73.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH-HHHHHHHHH--HHHHhCChhhhhccCCccchhHHHHHHH
Q 020228          200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNG-VICGPLLLL--WTFLRGDLETTINFPYLLSPGFLVVLCF  276 (329)
Q Consensus       200 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~--~~~~~ge~~~~~~~~~~~~~~~~~~l~~  276 (329)
                      ..|+++++++.+|++...+-.|+ .   +.-++|..+-.. +++..+...  ..+..++..+..   ...++..+..-++
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~---k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~---~~~~~~~~~~~~l   78 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-V---KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYY---SSFSGSTLLPVFL   78 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-c---CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HhcCHHHHHHHHH
Confidence            57999999999999998888777 3   346677663211 122222211  111122222222   2234555666677


Q ss_pred             HHHHHHHHHHHHHHHHhccc-hhHHHHhhchhhHHHHHHHHhhhcCC
Q 020228          277 SCILAFFLNYSIFLNTTLNS-AVTQTICGNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       277 ~~~~~~~~~~~~~~~i~~~s-a~t~si~~~~k~i~~~~~s~~~f~~~  322 (329)
                      +|++=-..|...+..+++.+ +.+..+..-+..+..++++.+++||-
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew  125 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNF  125 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcccc
Confidence            77777778888888888886 45555666677888889999998864

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=86.40  E-value=14  Score=33.66  Aligned_cols=139  Identities=9%  Similarity=0.020  Sum_probs=87.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-cccccccCCCCCccCCCCCccccHHH
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRR-WKIINFTMGDSLMTSDSSSTFVPLKT  120 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (329)
                      ..|++.+..|.+.=....-..+.++..++.. +..+.+.-.+...+.-....- .|..    .+..+.    -+ ...+.
T Consensus       171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~----~~av~F----~~-~hp~~  240 (327)
T KOG1581|consen  171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHL----LPAVSF----IK-EHPDV  240 (327)
T ss_pred             hHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCC----chHHHH----HH-cChhH
Confidence            3566666666654444444455666655544 333333333333333332211 1110    000000    00 13467


Q ss_pred             HHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhhee
Q 020228          121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV  190 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l  190 (329)
                      +++++.++.+.++++.+=+..++.-..=+.+++--+-=.+.++++.+.++.+.+..+|.++.+++.|..+
T Consensus       241 ~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  241 AFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            8899999999999999888888775444666666777788899999999999999999999998888765

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=84.59  E-value=1.9  Score=39.78  Aligned_cols=143  Identities=13%  Similarity=0.038  Sum_probs=94.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHH-HHHHcccccccCCCCCccCCCCCccccH
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALS--SYNFPCANVITLLQMISSCSFLY-FLRRWKIINFTMGDSLMTSDSSSTFVPL  118 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~--~~~f~~p~~l~~~q~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (329)
                      ..|...+..+......=..+.|.++.  ++..+ +..+..++.-++.+.+. +..-.   ..++... .. .  ....+.
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~---~~~~~~~-~~-~--~~~~~~  233 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDY---VEGNKFV-GF-L--TAPWFV  233 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhh---hccccee-ee-e--ccccch
Confidence            35677777777777777777888884  44555 55677777777777666 33221   0000000 00 0  000122


Q ss_pred             HHHHHHhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      . .......+++....+...+..+..+++=+++++-...-+++...++++++++.++...++.++.+.|+.+.+.
T Consensus       234 ~-~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  234 T-FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            2 2233334466666667888888999888999998888888888998888888899999999999999988643

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=84.51  E-value=19  Score=28.83  Aligned_cols=127  Identities=13%  Similarity=0.126  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccccccCCCCCccCCCCCccccHHHHHHHhHHH
Q 020228           49 ISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLA  128 (329)
Q Consensus        49 ~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (329)
                      +.-+..-.....+|-.+-...+  .|..=++.-+..+.+.+.++....+.+ . .+.       .+..||    +.+.=|
T Consensus         7 ~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~-~~~-------~~~~p~----w~~lGG   71 (138)
T PF04657_consen    7 LLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-S-LAS-------LSSVPW----WAYLGG   71 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-c-cch-------hccCCh----HHhccH
Confidence            3334333344445555554443  466677777777777766655433211 0 000       111233    222345


Q ss_pred             HHHHHHHHHhhhhccccchhHHHHHHh-HHHHHHHHHHHH----HhCcccCccchhhhhhhhhhhee
Q 020228          129 VAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYF----LAGQKYTPPVVGSVGLIILGAFV  190 (329)
Q Consensus       129 ~~~~~~~~~~n~al~~~~vs~~~il~s-~~pv~~~l~~~~----~~~e~~~~~~~~sv~~~~~Gv~l  190 (329)
                      ++-.....+.+.+...+.++..+.+.- -..+.-++++.+    .-|+++++.++.+++++++|+.+
T Consensus        72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            677777888999999999888777644 455566677764    34677999999999999999864

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=84.20  E-value=0.31  Score=43.38  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             cchhHHHHHHhHHHHHHHHHHHH-HhCcc-cCccchhhhhhhhhhheeeeecCc--ccchhHHHHHHHHHHHHHHHHHHH
Q 020228          145 VNVPMYTTLRRTTVAFTMIMEYF-LAGQK-YTPPVVGSVGLIILGAFVAGARDL--SFDFFGYAVVFLANITTAIYLATI  220 (329)
Q Consensus       145 ~~vs~~~il~s~~pv~~~l~~~~-~~~e~-~~~~~~~sv~~~~~Gv~l~~~~~~--~~~~~G~~~~l~s~~~~a~~~i~~  220 (329)
                      .+-+..+++.|...+.++++-.+ ++||| ..+.-.+|++++++-..+...-..  +.-+.|+++.++.....-.-+.+.
T Consensus        47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym  126 (381)
T PF05297_consen   47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM  126 (381)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566666666555544443 33444 677788888887766655433221  223578776666655555555554


Q ss_pred             HHhhcCCCCCchhHHHHHHHH
Q 020228          221 ARIGKSSGLNSFGLMWCNGVI  241 (329)
Q Consensus       221 ~~~~~~~~~~~~~l~~~~~~~  241 (329)
                      . ++++++.+-|+++.+...+
T Consensus       127 ~-lLr~~GAs~WtiLaFcLAF  146 (381)
T PF05297_consen  127 W-LLRELGASFWTILAFCLAF  146 (381)
T ss_dssp             ---------------------
T ss_pred             H-HHHHhhhHHHHHHHHHHHH
Confidence            3 7788888989887665543

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=80.83  E-value=40  Score=29.86  Aligned_cols=129  Identities=9%  Similarity=0.002  Sum_probs=79.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-cccccccCCCCCccCCCCCccccHHH
Q 020228           42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRR-WKIINFTMGDSLMTSDSSSTFVPLKT  120 (329)
Q Consensus        42 ~~~~l~~~~~~~~s~~~~~~nK~ll~~~~f~~p~~l~~~q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (329)
                      ..|++++++...+|......++.++-+.+  .+...--.|+-...++...... ....+ +..++       .-   ++.
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~-~~~~~-------g~---f~G  179 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGS-AISES-------GF---FHG  179 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhccccc-ccccC-------Cc---hhh
Confidence            45777788888888877888888887554  3455555665544444433322 21111 00000       00   111


Q ss_pred             HHH-HhHHHHHHHHHHHHhhhhccccchhHHHHHHhHHHHHHHHHHHHHhCcccCccchhhhhh
Q 020228          121 LMH-TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGL  183 (329)
Q Consensus       121 ~~~-~~~~~~~~~~~~~~~n~al~~~~vs~~~il~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~  183 (329)
                      +-. .+..-+..++.-..-...++|.+-=.-....+...+.+.+++.++++.+++..-.++..+
T Consensus       180 ~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  180 YSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            111 222233445454556667888877788888999999999999999999999887766543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.1
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.97
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	80.93
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	80.71

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.10  E-value=4.5e-06  Score=63.66  Aligned_cols=70  Identities=10%  Similarity=0.186  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeeecC
Q 020228          126 PLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD  195 (329)
Q Consensus       126 ~~~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~~~  195 (329)
                      ...+++.+..++...++++.|++.+..+ ..+.|+++++.+.+++||++++.++.++.+++.|+.+....+
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3345678888899999999999999888 899999999999999999999999999999999998865443

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.97  E-value=5.2e-06  Score=65.70  Aligned_cols=66  Identities=11%  Similarity=0.220  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhhhhccccchhHHHHH-HhHHHHHHHHHHHHHhCcccCccchhhhhhhhhhheeeee
Q 020228          128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA  193 (329)
Q Consensus       128 ~~~~~~~~~~~n~al~~~~vs~~~il-~s~~pv~~~l~~~~~~~e~~~~~~~~sv~~~~~Gv~l~~~  193 (329)
                      .+++.+..++.+.+++++|++.+..+ ..+.|++++++++++++|++++.++++++++++|+++...
T Consensus        37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            45678888999999999999988777 9999999999999999999999999999999999998644

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=80.93  E-value=14  Score=27.08  Aligned_cols=35  Identities=3%  Similarity=-0.085  Sum_probs=28.1

Q ss_pred             HHHHHhccchhHHHHh-hchhhHHHHHHHHhhhcCC
Q 020228          288 IFLNTTLNSAVTQTIC-GNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       288 ~~~~i~~~sa~t~si~-~~~k~i~~~~~s~~~f~~~  322 (329)
                      ...++|+.+......+ ..+.++.+.++|+++|||.
T Consensus        47 ~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~   82 (110)
T 3b5d_A           47 LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR   82 (110)
T ss_pred             HHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            3457888887777666 7889999999999999886

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=80.71  E-value=2.2  Score=33.13  Aligned_cols=37  Identities=3%  Similarity=-0.062  Sum_probs=25.5

Q ss_pred             HHHHHHHhccchhHHHHh-hchhhHHHHHHHHhhhcCC
Q 020228          286 YSIFLNTTLNSAVTQTIC-GNLKVCFPTTLHIAIATNF  322 (329)
Q Consensus       286 ~~~~~~i~~~sa~t~si~-~~~k~i~~~~~s~~~f~~~  322 (329)
                      ++...++++.++.....+ ..+.++.++++|+++|||.
T Consensus        45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~   82 (137)
T 2i68_A           45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR   82 (137)
T ss_dssp             HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            344678999998877777 8999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00