Citrus Sinensis ID: 020276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MENDFVDQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKAL
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEcccccccccccccEEcccEEEcccEEEEEEEcccccccccccEEEEEEEEccccccccccEEEEEEEEEEEccccccEEEEEcccccEEEEcccccccccccccccHHHcccccccccccEEEEccEEEEEEEcccccccccccccccccccccEEEEcccccccccccccccEEEcccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcEEEEEEEEEEEEEEcEEccccccccccccccccHHHccccccEEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEccHHHHHHHccccccccEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEccccEEEEEccccccccccHcccHHHcccccccEEEccEEEEEEEEEEEccccccccccccccccccccccEEEEEEccHHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEEcccEccccccEEEEEEEEccccccccccccccEHHHHccccccEEEccEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MENDFVDQVAISrsishvppahFLLKIEAFSSLVENDVenykslefdaggykWKLVVypngnknenvKDHISVYLAMVGtsslglgwEVYVIFRLFVLDQKKDEFLILQDAMGkqrrfhglklewgfdqfipleefinasngylvgdtcVFGAEVFVKETkkctgeclsmkkltstsnyKYVWKIEnfsklpdkiyesevfvagdqkwkillfpkglgvasgsHISMYLEltdsstitggskIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVciveaevpvlgiskal
Flexible Loop (DISEMBL)
MENDFVDQVAISrsishvppAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKEtkkctgeclsmkkltstsnykyVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAevpvlgiskal
Low Complexity Region (SEG)
MENDFVDQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKAL
Disordered region (IsUnstruct)
*******QVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI****
Disordered Region (DISOPRED)
*********************HFLLKIEAFSSLVENDV*NYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKAL
Disordered Region (DISEMBL)
MENDFVDQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKAL
Disordered Region (DISPRO)
*******************PAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETK**************TSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISK*L
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENDFVDQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.527	0.155	0.321	6e-18
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.448	0.131	0.343	6e-18
Q8RY18	1055	MATH domain-containing pr	no	no	0.378	0.117	0.284	3e-08
Q8T126	1304	Probable inactive serine/	no	no	0.792	0.199	0.224	3e-07
P34568	451	BTB and MATH domain-conta	yes	no	0.414	0.301	0.32	4e-07
Q54NN4	427	TNF receptor-associated f	no	no	0.423	0.325	0.264	0.0001
Q9UTT1	1129	Ubiquitin carboxyl-termin	yes	no	0.167	0.048	0.413	0.0005

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 20/193 (10%)

Query: 132 PLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKL 191
           P +E +   N  LV D      EV   ET   T E    +        K+ W I NFS+ 
Sbjct: 12  PEDEEMLVPNSDLV-DGPAQPMEVTQPETAASTVEN---QPAEDPPTLKFTWTIPNFSRQ 67

Query: 192 PDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRI 251
             + + S+VFV G  KW+IL+FPKG  V    H+SMYL+++D++++  G   Y  F+L +
Sbjct: 68  NTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDAASLPYGWSRYAQFSLAV 124

Query: 252 RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVND 311
            NQ+ +++  +K              T    N   +  G++ F+ L+ L     G+LVND
Sbjct: 125 VNQIHTRYTVRK-------------ETQHQFNARESDWGFTSFMPLSELYDPSRGYLVND 171

Query: 312 VCIVEAEVPVLGI 324
             +VEAEV V  +
Sbjct: 172 TVLVEAEVAVRKV 184

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 19/166 (11%)

Query: 9   VAISRSISHVPPA-HFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENV 67
            A+       PP+  F   I  F+ L  N  ++Y  + F  GGYKW+++++P GN   NV
Sbjct: 41  TAVENPPPEDPPSLKFTWTIPMFTRL--NTRKHYSDV-FVVGGYKWRILIFPKGN---NV 94

Query: 68  KDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGF 127
            DH+S+YL +   ++L  GW  Y  F L V++Q  + + I ++    Q +F+  + +WGF
Sbjct: 95  -DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET---QHQFNARESDWGF 150

Query: 128 DQFIPLEEFINASNGYLVGDTCVFGAEVFVK--------ETKKCTG 165
             F+PL E    + GYLV DT +  AEV V+        ++KK TG
Sbjct: 151 TSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKVLDYWSYDSKKETG 196

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 20/144 (13%)

Query: 180 KYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITG 239
           K  W IE FS +  +    +VF  G  KW IL++P+G  V   +H+S++L +     +  
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDVC--NHLSLFLCVAHHEKLLP 127

Query: 240 GSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNY 299
           G   +  FT+ + N+   K        ++ K         +W        GW KFIEL  
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSKHSDTLHRFWK------KEHDW--------GWKKFIELPK 173

Query: 300 LKKAGNGFLVNDVCI-VEAEVPVL 322
           LK+   GF+ +  C+ ++A+V V+
Sbjct: 174 LKE---GFIDDSGCLTIKAQVQVI 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 131/299 (43%), Gaps = 39/299 (13%)

Query: 24   LLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVG--TS 81
            ++ I  FS    N  + + S  F   G  W+   Y NG K+ +    +S++++      +
Sbjct: 1029 IISINNFS----NRKDQFYSPIFSLIGSNWRCKFYSNG-KDASTSGKLSIFISNCDLLNN 1083

Query: 82   SLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASN 141
               +  E  + ++L +++QK     I + +      F   +   G+  FI L   +N +N
Sbjct: 1084 PFTIFLEKSISYKLTLINQKNPNESIQKSS---SHTFSIKEFNHGYGSFIGLFSLLNPNN 1140

Query: 142  GYLVGDTCVFGAEVFVKETKKCTGECLSM-KKLTSTSNYKYVWKIENFSKLPDKIYESEV 200
            G+LV +T      + V+     T   ++   K     N  + + +   SK  +  + S +
Sbjct: 1141 GFLVNNT------IKVRIDAAPTSPLVNTYDKYNIGLNQAFSYSVPMMSKKSEP-FISPI 1193

Query: 201  FVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHY 260
            F++  +KW I ++P  +G  S +++S++LE  D           VHF+L    +L+S+ Y
Sbjct: 1194 FMSCGRKWIIKIYP--MGQPSSNYMSVFLEYRDEGEEN------VHFSL----ELISQLY 1241

Query: 261  EKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEV 319
             +++         + +      N+     G+ KFI ++ L     GFLVND  I+   +
Sbjct: 1242 PEQS---------IKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVSI 1291

Dictyostelium discoideum (taxid: 44689)

>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=3 SV=2

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 22  HFLLKIEAFSSLVENDVENYKSLEFDAG---GYKWKLVVYPNGNKNENVKDHISVYLAMV 78
           +++  I  FS   E   E  KS  F AG     KW L + P G  +E  +D++S+YL +V
Sbjct: 97  NYMWTINNFSFCREEMGEVLKSSTFSAGCNDKLKWCLRINPKG-LDEESRDYLSLYLLLV 155

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLK-LEWGFDQFIPLEEFI 137
             +      EV   F+  +L+ K++E      AM  QR +  ++  +WGF +FI  +  +
Sbjct: 156 QCNK----SEVRAKFKFSILNAKREE----TKAMESQRAYRFVQGKDWGFKKFIRRDFLL 207

Query: 138 NASNGYLVGDTCVFGAEV-FVKETKKCTGE 166
           + +NG L GD      EV  V ET   TG+
Sbjct: 208 DEANGLLPGDRLSIFCEVSVVAETVNVTGQ 237

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54NN4|Y8514_DICDI TNF receptor-associated factor family protein DDB_G0285149 OS=Dictyostelium discoideum GN=DDB_G0285149 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 31/170 (18%)

Query: 162 KCTGECLSMKKLTSTSNYKYVWKIENFSK----LPD------KIYESEVFVAGDQKWKIL 211
           KC+ E L  K+LT+ + Y   W IEN+ +    +P+      K     +F    +K+ + 
Sbjct: 269 KCSHETLE-KRLTNINKYSNQWVIENWMQKVIDIPNDEVTSTKRVSCPMFYFNSRKYNVS 327

Query: 212 LFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKV 271
            FP G   A+  +IS+YL L ++S       I + F+  I N   +K   KK K  Y + 
Sbjct: 328 CFPNGFTPANKDYISLYLHLHEAS-----PNINIKFSFEIVNSDPTKSI-KKEKNSYFQN 381

Query: 272 SIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPV 321
              +              GW KF E   +   G GF+V +   ++ E+ +
Sbjct: 382 DKGI--------------GWEKFAECKTINTLGEGFVVGNKLTIKFEIEI 417

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 173 LTSTSNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLE 230
           L   ++  Y W ++NFS L DK Y S +F AG   W+I+LFPKG       + S++LE
Sbjct: 46  LEEAAHASYSWVVKNFSTLEDKTY-SPLFKAGHTTWRIVLFPKGCN--QTEYASVFLE 100

Involved in regulating the steady-state levels of proteins including prp4.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.923	0.980	0.504	1e-89
21537273	309	unknown [Arabidopsis thaliana]	0.923	0.980	0.504	7e-89
18401489	309	TRAF-like family protein [Arabidopsis th	0.923	0.980	0.504	2e-85
11994555	304	unnamed protein product [Arabidopsis tha	0.911	0.983	0.507	3e-85
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.935	0.971	0.507	8e-85
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.935	0.971	0.504	9e-85
255556544	455	nucleic acid binding protein, putative [	0.890	0.641	0.507	1e-81
356519881	310	PREDICTED: uncharacterized protein LOC10	0.929	0.983	0.478	8e-78
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.923	0.974	0.475	6e-75
255636923	276	unknown [Glycine max]	0.777	0.923	0.527	5e-71

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/323 (50%), Positives = 223/323 (69%), Gaps = 20/323 (6%)

Query: 7   DQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNEN 66
           D   I +SIS  PP H+++KIE+FS L ++ +E Y++  F+AGGYKWKLV+YPNGNK++N
Sbjct: 6   DHDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKN 65

Query: 67  VKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWG 126
            KDH+SVYLA+  +SSL  GWEVY +FRL++LDQ KD +LILQ   G +RRFH +K EWG
Sbjct: 66  TKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHAVKREWG 122

Query: 127 FDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKI 185
           FD+FIP   F +ASNGYL+ DTC+FGA+VFV KE +   GECLSM K  ++S  K+VWKI
Sbjct: 123 FDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSS--KHVWKI 180

Query: 186 ENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYV 245
           ENFSKL  + Y+S  F AGD+KWK+  +P G    +G+H+S+YL L D  TI+ G+KI+V
Sbjct: 181 ENFSKLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFV 240

Query: 246 HFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGN 305
            FT+RI +QL  +H   K                +W + S +  GW K++ + Y  +  +
Sbjct: 241 EFTIRIFDQLQGRHIAGKVT--------------KWFSRSSSEHGWVKYVSMVYFTQPNS 286

Query: 306 GFLVNDVCIVEAEVPVLGISKAL 328
           G L+ DVC+VEA+V V GI+ A+
Sbjct: 287 GLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 163/323 (50%), Positives = 223/323 (69%), Gaps = 20/323 (6%)

Query: 7   DQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNEN 66
           D   I +SIS  PP H+++KIE+FS L ++ +E Y++  F+AGGYKWKLV+YPNGNK++N
Sbjct: 6   DYDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKN 65

Query: 67  VKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWG 126
            KDH+SVYLA+  +SSL  GWEVY +FRL++LDQ KD +LILQ   G +RRFH +K EWG
Sbjct: 66  TKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWG 122

Query: 127 FDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKI 185
           FD+FIP   F ++SNGYL+ DTC+FGA+VFV KE +   GECLSM K  ++S  K+VWKI
Sbjct: 123 FDKFIPTGTFSDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSS--KHVWKI 180

Query: 186 ENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYV 245
           ENFSKL  + Y+S  F AGD+KWKI  +P G    +G+H+S+YL L D  TI+ G+KI+V
Sbjct: 181 ENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFV 240

Query: 246 HFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGN 305
            FT+RI +QL  +H   K                +W + S +  GW K++ + Y  +  +
Sbjct: 241 EFTIRIFDQLQGRHIAGKVT--------------KWFSRSSSEHGWVKYVSMVYFTQPNS 286

Query: 306 GFLVNDVCIVEAEVPVLGISKAL 328
           G L+ DVC+VEA+V V GI+ A+
Sbjct: 287 GLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/323 (50%), Positives = 223/323 (69%), Gaps = 20/323 (6%)

Query: 7   DQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNEN 66
           D   I +SIS  PP H+++KIE+FS L ++ +E Y++  F+AGGYKWKLV+YPNGNK++N
Sbjct: 6   DYDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKN 65

Query: 67  VKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWG 126
            KDH+SVYL++  +SSL  GWEVY +FRL++LDQ KD +LILQ   G +RRFH +K EWG
Sbjct: 66  TKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWG 122

Query: 127 FDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKI 185
           FD+FIP   F +ASNGYL+ DTC+FGA+VFV KE +   GECLSM K  ++S  K+VWKI
Sbjct: 123 FDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSS--KHVWKI 180

Query: 186 ENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYV 245
           ENFSKL  + Y+S  F AGD+KWKI  +P G    +G+H+S+YL L D  TI+ G+KI+V
Sbjct: 181 ENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFV 240

Query: 246 HFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGN 305
            FT+RI +QL  +H   K                +W + S +  GW K++ + Y  +  +
Sbjct: 241 EFTIRIFDQLQGRHIAGKVT--------------KWFSRSSSEHGWVKYVSMVYFTQPNS 286

Query: 306 GFLVNDVCIVEAEVPVLGISKAL 328
           G L+ DVC+VEA+V V GI+ A+
Sbjct: 287 GLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/319 (50%), Positives = 222/319 (69%), Gaps = 20/319 (6%)

Query: 11  ISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDH 70
           I +SIS  PP H+++KIE+FS L ++ +E Y++  F+AGGYKWKLV+YPNGNK++N KDH
Sbjct: 5   IIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKNTKDH 64

Query: 71  ISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQF 130
           +SVYL++  +SSL  GWEVY +FRL++LDQ KD +LILQ   G +RRFH +K EWGFD+F
Sbjct: 65  VSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKF 121

Query: 131 IPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKIENFS 189
           IP   F +ASNGYL+ DTC+FGA+VFV KE +   GECLSM K  ++S  K+VWKIENFS
Sbjct: 122 IPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSS--KHVWKIENFS 179

Query: 190 KLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTL 249
           KL  + Y+S  F AGD+KWKI  +P G    +G+H+S+YL L D  TI+ G+KI+V FT+
Sbjct: 180 KLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTI 239

Query: 250 RIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLV 309
           RI +QL  +H   K                +W + S +  GW K++ + Y  +  +G L+
Sbjct: 240 RIFDQLQGRHIAGKVT--------------KWFSRSSSEHGWVKYVSMVYFTQPNSGLLL 285

Query: 310 NDVCIVEAEVPVLGISKAL 328
            DVC+VEA+V V GI+ A+
Sbjct: 286 KDVCLVEADVCVHGITSAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 166/327 (50%), Positives = 223/327 (68%), Gaps = 20/327 (6%)

Query: 4   DFVDQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNK 63
           D +D+  ISR +S VPPAH+ +KIE+FS L +N V+ ++S EF+AGGYKWKLV++P+G+K
Sbjct: 7   DDIDE--ISRYVSDVPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKWKLVLHPHGDK 64

Query: 64  NENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKL 123
           ++N  DHIS+YL + GT SL   WEV+V++RLF+LDQ KD +L ++D   K RRF G+K 
Sbjct: 65  SKNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKK 124

Query: 124 EWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET-KKCTGECLSMKKLTSTSNYKY 181
           +WGFD++I L+EF  +SNGYLV D CVFGAEVFV KE  K   GECLSM  + S   YK+
Sbjct: 125 QWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSM--IKSPVTYKH 182

Query: 182 VWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGS 241
           VWKI+NFSKL  + YES++F AGD+KWKI ++PKG G   GSH+S YLEL D + +   +
Sbjct: 183 VWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPAT 242

Query: 242 KIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLK 301
           KIY   TLR+++Q+ SKH+  K                 W + S    G  +FI L+  K
Sbjct: 243 KIYAEVTLRLQDQIYSKHHSGKVSY--------------WFSASNPEVGGPRFILLDNFK 288

Query: 302 KAGNGFLVNDVCIVEAEVPVLGISKAL 328
           +   GFLV D  IVEAEV V+G++ A 
Sbjct: 289 QPNIGFLVKDAFIVEAEVNVIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 165/327 (50%), Positives = 223/327 (68%), Gaps = 20/327 (6%)

Query: 4   DFVDQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNK 63
           D +D+  ISR +S VPPAH+ +KIE+FS L +N V+ ++S EF+AGGYKWKLV++P+G+K
Sbjct: 7   DDIDE--ISRYVSDVPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKWKLVLHPHGDK 64

Query: 64  NENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKL 123
           ++N  DHIS+YL + GT SL   WEV+V++RLF+LDQ KD +L ++D   K RRF G+K 
Sbjct: 65  SKNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKK 124

Query: 124 EWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET-KKCTGECLSMKKLTSTSNYKY 181
           +WGFD++I L+EF  +SNGYLV D CVFGAEVFV KE  K   GECLSM  + S   YK+
Sbjct: 125 QWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSM--IKSPVTYKH 182

Query: 182 VWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGS 241
           VWKI+NFSKL  + YES++F AGD+KWKI ++PKG G   GSH+S YLEL D + +   +
Sbjct: 183 VWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPAT 242

Query: 242 KIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLK 301
           KIY   TLR+++Q+ SKH+  K                 W + S    G  +FI L+  K
Sbjct: 243 KIYAEVTLRLQDQIYSKHHSGKVSY--------------WFSASNPEVGGPRFILLDNFK 288

Query: 302 KAGNGFLVNDVCIVEAEVPVLGISKAL 328
           +   GFLV D  IVEAEV ++G++ A 
Sbjct: 289 QPNIGFLVKDAFIVEAEVSIIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/317 (50%), Positives = 213/317 (67%), Gaps = 25/317 (7%)

Query: 14  SISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISV 73
           ++S   P H+ +KI+ FS L    VE Y+S  F+AGGYKWKLV+YP GNK++NV +H+S+
Sbjct: 162 TMSDASPTHYTVKIQLFSLLA---VEKYESGSFEAGGYKWKLVLYPKGNKSKNVMEHLSL 218

Query: 74  YLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPL 133
           Y+AM  +S+L LGWEV+V+FRLF+LDQ +D +LIL    GK+ RFHG +LEWGFDQ IPL
Sbjct: 219 YIAMADSSNLQLGWEVHVVFRLFLLDQIRDNYLILP---GKECRFHGFRLEWGFDQLIPL 275

Query: 134 EEFINASNGYLVGDTCVFGAEVFVKETKKCT--GECLSMKKLTSTSNYKYVWKIENFSKL 191
               +  NGYLV DTCVFGAEVFV++ + CT  GECLSM K +STS  K +W+ ENFSKL
Sbjct: 276 ATLKDTKNGYLVEDTCVFGAEVFVRK-ESCTGKGECLSMIKSSSTS--KNLWRFENFSKL 332

Query: 192 PDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRI 251
             +  +S+ FVAGDQ+WKI L+PKG G+ SG+H+S++L L D + IT G KI   FTLRI
Sbjct: 333 DAECNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALADLTAITPGFKILADFTLRI 392

Query: 252 RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVND 311
            +Q    H   KA                W + S ++ GWS+F  L+ L  + N +L  D
Sbjct: 393 LDQSRGSHLFGKANF--------------WFSASSSVCGWSRFYPLDQLYASSNAYLFKD 438

Query: 312 VCIVEAEVPVLGISKAL 328
            C+ EAE+ VLGI+  L
Sbjct: 439 TCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 154/322 (47%), Positives = 208/322 (64%), Gaps = 17/322 (5%)

Query: 8   QVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENV 67
           Q AI RS    PPAH+++KI++FS L +N +E Y+S +F+AGGYKWKLV+YP+GNK++N+
Sbjct: 4   QDAIPRSTVDAPPAHYVMKIQSFSLLAKNSIERYESGKFEAGGYKWKLVLYPSGNKSKNI 63

Query: 68  KDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGF 127
           ++HIS+YLA+  TSSL  GWE+YV FR F+ DQ  D +L+  D +  +RRFH +K EWG 
Sbjct: 64  REHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGI 123

Query: 128 DQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKIE 186
           DQFIPL +F  AS GYLV DTC FGAEVFV KE     GECL M K      YK++++ +
Sbjct: 124 DQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAIL--YKHLYEFD 181

Query: 187 NFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVH 246
           N SKL  + Y+S+ F AG+ KWKI L+PKG G   G+++S+YL L D S ++  SKIY  
Sbjct: 182 NLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQ 241

Query: 247 FTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNG 306
            TLRI +Q  +KH+  KA                W + S    G + F+ +N       G
Sbjct: 242 ITLRILDQKQAKHHFGKA--------------NYWFSASSHENGAAIFMPINNFTNQNFG 287

Query: 307 FLVNDVCIVEAEVPVLGISKAL 328
           ++V D C VEAEV +LG+  AL
Sbjct: 288 YVVKDSCFVEAEVIILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 152/320 (47%), Positives = 205/320 (64%), Gaps = 17/320 (5%)

Query: 10  AISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKD 69
            ISRSI    P H+++KI++FS L  N +E Y+S  F+AGG+KWKLV+YP+GNK++NVKD
Sbjct: 7   GISRSIVEASPVHYIMKIQSFSLLTTNSIERYESGRFEAGGHKWKLVLYPSGNKSKNVKD 66

Query: 70  HISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQ 129
           HIS+YLA+  +SSL  GWE+YV F+LFV DQ  D +L+LQD + K++RFH +K+EWGFDQ
Sbjct: 67  HISLYLALEESSSLHPGWEIYVNFKLFVYDQNNDNYLVLQDDVKKEKRFHRMKVEWGFDQ 126

Query: 130 FIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKIENF 188
           FIPL++F   S GYL+ D C FGAEVFV +E     GE L M K      YK+VW+I++F
Sbjct: 127 FIPLKDFNIGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMK--DALPYKHVWEIKDF 184

Query: 189 SKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFT 248
           SKL  +  +S+ F  G+ KW+I L+PKG     G ++++YL L + +TI  GSKIY    
Sbjct: 185 SKLDSECCDSKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLANPTTIPPGSKIYAQTI 244

Query: 249 LRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFL 308
           LRI +Q  SKH   KA                W + S    G S+FI  +       G+L
Sbjct: 245 LRILDQKQSKHQFWKA--------------NYWFSASSHEHGTSRFILCSNFTSQYLGYL 290

Query: 309 VNDVCIVEAEVPVLGISKAL 328
           V D+C V+ EV VLG+  AL
Sbjct: 291 VKDICFVDVEVTVLGVVDAL 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636923|gb|ACU18794.1| unknown [Glycine max]

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 136/258 (52%), Positives = 182/258 (70%), Gaps = 3/258 (1%)

Query: 8   QVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENV 67
           Q AI RS    PPAH+++KI++FS L +N +E Y+S +F+AGGYKWKLV+YP+GNK++N+
Sbjct: 4   QDAIPRSTVDAPPAHYVMKIQSFSLLAKNSIERYESGKFEAGGYKWKLVLYPSGNKSKNI 63

Query: 68  KDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGF 127
           ++HIS+YLA+  TSSL  GWE+YV FR F+ DQ  D +L+  D +  +RRFH +K EWG 
Sbjct: 64  REHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGI 123

Query: 128 DQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKIE 186
           DQFIPL +F  AS GYLV DTC FGAEVFV KE     GECL M K      YK++++ +
Sbjct: 124 DQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAIL--YKHLYEFD 181

Query: 187 NFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVH 246
           N SKL  + Y+S+ F AG+ KWKI L+PKG G   G+++S+YL L D S ++  SKIY  
Sbjct: 182 NLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQ 241

Query: 247 FTLRIRNQLVSKHYEKKA 264
            TLRI +Q  +KH+  KA
Sbjct: 242 ITLRILDQKQAKHHFGKA 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.768	0.815	0.562	5e-76
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.731	0.648	0.350	5.9e-42
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.884	0.765	0.329	1.4e-39
TAIR|locus:2151049	333	AT5G26290 "AT5G26290" [Arabido	0.676	0.666	0.362	3.2e-39
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.890	0.804	0.316	3.7e-39
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.753	0.705	0.355	1.1e-37
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.713	0.557	0.366	2.4e-37
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.725	0.678	0.365	9.2e-36
TAIR|locus:2056008	411	AT2G04190 "AT2G04190" [Arabido	0.740	0.591	0.332	5.8e-34
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.713	0.590	0.292	7.9e-33

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 145/258 (56%), Positives = 192/258 (74%)

Query:     7 DQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNEN 66
             D   I +SIS  PP H+++KIE+FS L ++ +E Y++  F+AGGYKWKLV+YPNGNK++N
Sbjct:     6 DYDEIIKSISDAPPTHYMVKIESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKN 65

Query:    67 VKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWG 126
              KDH+SVYL++  +SSL  GWEVY +FRL++LDQ KD +LILQ   G +RRFH +K EWG
Sbjct:    66 TKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWG 122

Query:   127 FDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGECLSMKKLTSTSNYKYVWKI 185
             FD+FIP   F +ASNGYL+ DTC+FGA+VFV KE +   GECLSM K  +TS+ K+VWKI
Sbjct:   123 FDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIK-DATSS-KHVWKI 180

Query:   186 ENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYV 245
             ENFSKL  + Y+S  F AGD+KWKI  +P G    +G+H+S+YL L D  TI+ G+KI+V
Sbjct:   181 ENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFV 240

Query:   246 HFTLRIRNQLVSKHYEKK 263
              FT+RI +QL  +H   K
Sbjct:   241 EFTIRIFDQLQGRHIAGK 258

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 88/251 (35%), Positives = 135/251 (53%)

Query:    18 VPPAHFLLKIEAFSSLVEN-DVENYKSLEFDAGGYKWKLVVYPNGNKNENVK-DHISVYL 75
             +PP+ + LKIE+F     + + E Y+S  F++GGY W L+VYP GN  E    +++S+Y+
Sbjct:    78 IPPSTYCLKIESFIKFATSPNAEKYESRPFESGGYNWTLIVYPKGNIKEGAPLNYVSMYV 137

Query:    76 AMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEE 135
              +  ++ L    EVY   + F+ ++K+D++L  Q+   K  RF   K  WG+    P  +
Sbjct:   138 QIDNSTLLNSPKEVYAEVKFFIYNRKEDKYLTYQETDAK--RFFLFKPYWGYGNVRPYTD 195

Query:   136 FINASNGYLV-GDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDK 194
               N + G+L  GD  +FG +VFV E      E  S  K  S  +  Y W + NFS L  +
Sbjct:   196 VANPNAGWLFDGDNVLFGVDVFVTEVFN-KWEVFSFTK--SLHDRLYKWTLPNFSSLEKQ 252

Query:   195 IYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQ 254
              Y S+ FV G + W + ++P G G   G+ +S+Y+   D   +    KIY+   LRI NQ
Sbjct:   253 YYVSDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVD---VKPYDKIYLKAKLRIINQ 309

Query:   255 LVSKHYEKKAK 265
               SKH EKK +
Sbjct:   310 RDSKHMEKKVE 320

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 102/310 (32%), Positives = 160/310 (51%)

Query:    19 PPAHFLLKIEAFSSLVEND-VENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAM 77
             PP+ + LK+E+F++L+++   E Y S  F  GGY W LVV+PNGNK ++   ++S+Y+A 
Sbjct:    84 PPSSYSLKMESFNTLLKSTYTEKYVSRPFSVGGYNWTLVVFPNGNKKDSGSGYLSLYVA- 142

Query:    78 VGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFI 137
             +  S+LG   E+Y   R ++ ++ + ++  +QD      +F   K  WGF Q +P++ F 
Sbjct:   143 IDNSTLGQQ-EIYADLRFYIFNKNERKYFTIQDT--DVWKFSVFKTMWGFSQVLPIDTFK 199

Query:   138 NASNGYLV-GDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIY 196
             + + GYL  GD C FG +V +    +   E  S+ +  +  N ++ W I  FS L    Y
Sbjct:   200 DPTKGYLYDGDHCEFGVDVTMPSLYE-KSELFSVTE--NFLNPRFTWTIRGFSTLLKNSY 256

Query:   197 ESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLV 256
              SEVF  G + W I + P GLG   G  +SMYL L  +       KIYV   LR  NQL 
Sbjct:   257 LSEVFSIGGRSWNIQINPSGLGTGEGKALSMYLGLNVNEIFRPYEKIYVRAKLRALNQLN 316

Query:   257 SKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVE 316
               + E++    Y       +    W        G+ +FI   YL  +  GF+ NDV +V+
Sbjct:   317 LSNIERELDIWYNGPG---YGEYSW--------GFPEFIYFPYLTDSSKGFVKNDVLMVQ 365

Query:   317 AEVPVLGISK 326
              E+  +  +K
Sbjct:   366 VEMEAISSTK 375

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2151049 AT5G26290 "AT5G26290" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 88/243 (36%), Positives = 139/243 (57%)

Query:    20 PAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVG 79
             P+  +L I +FS ++    E Y+S  F+A GYKW+LV+Y NGN+ +  KDH+S+Y  +V 
Sbjct:    52 PSDKILSITSFS-IIRTRPEPYESSVFEAVGYKWRLVLYVNGNEKDGGKDHVSLYAKIVE 110

Query:    80 TSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINA 139
             T SL +GWEV V  +LFV + K +++LI+       +R++    E G+ Q IP   F + 
Sbjct:   111 TESLPVGWEVNVDLKLFVYNGKLNKYLIVT-----VKRYNNATKELGYGQLIPQSTFYDG 165

Query:   140 SNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYK---YVWKIENFSKLPDKIY 196
             ++GY   DT  FGAE+++ +  +        +K+T  SN     + WKI +FS L DK+Y
Sbjct:   166 NDGYREQDTGTFGAEIYIVKPAQ------QKEKVTFISNPPDNVFTWKILHFSTLEDKVY 219

Query:   197 ESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLV 256
             +S  F+ GD+ WK+ L PKG G+     I +Y +   ++ +   +  Y    LR++NQ  
Sbjct:   220 QSNEFLVGDRYWKLGLNPKG-GLVP---IFLYAQGFKANAVV--TTTYAATNLRLKNQRS 273

Query:   257 SKH 259
             S H
Sbjct:   274 SNH 276

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 100/316 (31%), Positives = 165/316 (52%)

Query:     8 QVAISRSISHV---PPAHFLLKIEAFSSLVEND-VENYKSLEFDAGGYKWKLVVYPNGNK 63
             +V++S ++  +   PP+ + LK+E+F++L+++   E Y+S  F  G Y W LVVYP GNK
Sbjct:    51 KVSLSSTVKGLRERPPSSYSLKMESFNTLMKSVYTERYESRPFRVGRYNWTLVVYPKGNK 110

Query:    64 NENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKL 123
             N+N   HIS+Y+ +  ++      EV+V  R +V ++K+ ++  +QD      RF  +K 
Sbjct:   111 NDNGTGHISLYVVLDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDT--DVWRFSAIKR 168

Query:   124 EWGFDQFIPLEEFINASNGYLVG-DTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYV 182
              WGF + +PL  F N  NGYL   D C FG +V +    +   E  S+ K  S  + ++ 
Sbjct:   169 MWGFSKVLPLITFNNLKNGYLYDVDHCEFGVDVIIPPFYE-KSEVFSVTK--SFPSPRFT 225

Query:   183 WKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGG-- 240
             W I+ +S LP   Y SE F+ G + W + +F  G G   G ++S+YL L     +     
Sbjct:   226 WYIQGYSTLPTD-YLSEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELLKAKPY 284

Query:   241 SKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYL 300
              K+YV   LR+ NQ  S+              ++      W +      G++ F+ L+ L
Sbjct:   285 DKVYVRAKLRVPNQFGSQSN-----------LVLERPLDNWFSPQTIGWGYADFMPLSDL 333

Query:   301 KKAGNGFLVNDVCIVE 316
             + +  GFLVND+ +V+
Sbjct:   334 RNSSKGFLVNDMLVVQ 349

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 90/253 (35%), Positives = 142/253 (56%)

Query:     7 DQVAISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNEN 66
             + + ++R +    P+  ++ I +FS +++   E Y+S  F+A GYKW+LV+Y NGNKN+ 
Sbjct:    46 ENLGVTRELREERPSSKIVTITSFS-VIKGRGEPYESSVFEAAGYKWRLVLYVNGNKNDG 104

Query:    67 VKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWG 126
               DHIS+Y  +  T+SL LGWEV V  +LFV + K  ++L + D + K  R++  K EWG
Sbjct:   105 GNDHISLYARIEETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTDGLVK--RYNNAKKEWG 162

Query:   127 FDQFIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIE 186
             F Q IP   F NA+ GYL  DT  FGAE+F+ +  +   E ++   +++  N  + WKI 
Sbjct:   163 FGQLIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQ-QQEKVTF--ISNPPNNVFTWKIL 219

Query:   187 NFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVH 246
              FS L DK Y S+ F+  D+ W++   PKG G      + ++L           +  +  
Sbjct:   220 RFSTLEDKFYYSDDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGHKANAVATNTWGA 279

Query:   247 FTLRIRNQLVSKH 259
               LR++NQ  + H
Sbjct:   280 VNLRLKNQRSTNH 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 88/240 (36%), Positives = 139/240 (57%)

Query:    20 PAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVG 79
             P++ +L I +FS +++   E Y+S  F+AGGYKW+LV+Y NGN+N+   +HIS+Y+ +  
Sbjct:   129 PSNKILTITSFS-VIKGRGEPYESSVFEAGGYKWRLVLYVNGNQNDGGNNHISLYVRIEE 187

Query:    80 TSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINA 139
             T SL  GWEV V  +LFV + K+ ++LI++D + K  R++  K EWG+ + IPL  F++ 
Sbjct:   188 TESLPKGWEVNVELKLFVYNGKQRKYLIVKDGIVK--RYNDAKKEWGYGKLIPLTTFLDT 245

Query:   140 SNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFSKLPDKIYESE 199
             + GYL  D   FGAE+F   T     E ++   +++  N  + WKI +FS L DK Y S+
Sbjct:   246 NEGYLEQDIASFGAEIF-SGTAVQVQEKVTF--ISNPPNNVFTWKILHFSNLEDKFYYSD 302

Query:   200 VFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKH 259
              F+  D+ W++   PKG G      I ++L           +  +    LR++NQ  S H
Sbjct:   303 DFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHKPNAVATNTWGAVNLRLKNQRSSNH 362

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 92/252 (36%), Positives = 138/252 (54%)

Query:    12 SRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHI 71
             +R +    P+  ++ I +FS ++++  E Y+S  F+A GYKW+LV+Y  GN    + +HI
Sbjct:    52 TRELRDERPSSKIVTITSFS-VIKDRGEPYESSIFEAAGYKWRLVLYVKGNPKGGINNHI 110

Query:    72 SVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFI 131
             S+Y  +  T +L  GWEV V  +LFV ++K  ++L + D  G  +R++  K EWGF Q I
Sbjct:   111 SLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTD--GTVKRYNDAKKEWGFTQLI 168

Query:   132 PLEEFINASNGYLVGDTCVFGAEVF-VKETKKCTGECLSMKKLTSTSNYK---YVWKIEN 187
              L  F NA+ GYLV DT  FGAE+F V  T+K        +K+T  SN     + WKI  
Sbjct:   169 SLPTFYNANEGYLVQDTASFGAEIFIVNPTEK-------QEKVTFISNPPDNVFTWKILR 221

Query:   188 FSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHF 247
             FS L DK Y S+ F+ GD+ W++   PKG G      + ++L           +  +   
Sbjct:   222 FSTLEDKFYYSDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGHKANAVVTNTWGAV 281

Query:   248 TLRIRNQLVSKH 259
              LR++NQ  S H
Sbjct:   282 NLRLKNQRSSNH 293

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2056008 AT2G04190 "AT2G04190" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 83/250 (33%), Positives = 139/250 (55%)

Query:    11 ISRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAG-GYKWKLVVYPNGNKNENVKD 69
             ++R++   PP+H +L I  FS ++  + E Y+S  F+A   +KW+L++Y NGN+N+   +
Sbjct:   110 VTRTLRDEPPSHRILTITNFSEIIGRE-EPYESSVFEAYFEHKWRLILYVNGNQNDGGSN 168

Query:    70 HISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQ 129
             HIS+YL    T  L     +  + +LFV + K+D++L + D  G Q+R++    EWG+ +
Sbjct:   169 HISLYLRSEETDHLTYDGSINFVLKLFVYNGKQDKYLTVTD--GIQKRYNYKNKEWGYGK 226

Query:   130 FIPLEEFINASNGYLVGDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFS 189
              IPL  F++ S GYL  DT  FGAE+F+    +   E ++   +++  N  + WKI +FS
Sbjct:   227 LIPLSTFLDTSQGYLEQDTASFGAEIFLCPPIQVQ-EKVTF--ISNPPNNVFTWKILHFS 283

Query:   190 KLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTL 249
              L D +Y S+ F+  D+ W++ + PKG G      I ++L           S  +    L
Sbjct:   284 TLEDIVYYSDDFLVEDRYWRLGVNPKGTGDGRSQAIKIFLYAQGHKPNAVVSSTWGAVNL 343

Query:   250 RIRNQLVSKH 259
             R++NQ  S H
Sbjct:   344 RVKNQRSSNH 353

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 73/250 (29%), Positives = 133/250 (53%)

Query:    19 PPAHFLLKIEAFSSLVENDVEN---YKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYL 75
             PP  + +K ++F ++ +   EN   Y+S  F  GGY W L++YP      +   ++S+Y+
Sbjct:    93 PPNSYCVKFQSFVTMAKQVKENGGKYESRPFSVGGYNWTLLIYPVIYIPTDSGGYVSIYV 152

Query:    76 AMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEE 135
              +  +S +    +VY            D++ I Q+   + +RFH  K +WG  QF+P+  
Sbjct:   153 RVDNSSLITNPKDVYAEITFLAYKSSTDKYQISQET--EAQRFHLFKQQWGLLQFLPIYY 210

Query:   136 FINASNGYLV-GDTCVFGAEVFVKETKKCTGECLSMKKLTSTSNYKYVWKIENFS-KLPD 193
             F N + GY   G++ VFG ++ + +  +   E  S ++  +  +  + W++  FS +  D
Sbjct:   211 FENPAYGYFFEGESVVFGVDINIVKPFE-NWEVFSNEQ--NIRDPIFEWRLTKFSTRFLD 267

Query:   194 KIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRN 253
               Y S+ F +G + W + ++P G+G A+G+ +S+YL L+D S   G    YV   LR+ +
Sbjct:   268 S-YTSDSFSSGGRNWALKVYPNGVGNATGNSLSLYL-LSDQSNDKG----YVEAKLRVID 321

Query:   254 QLVSKHYEKK 263
             Q+ S ++EKK
Sbjct:   322 QIQSNNFEKK 331

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__1915__AT3G17380.1 annotation not avaliable (309 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	3e-25
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	4e-24
pfam00917	116	pfam00917, MATH, MATH domain	3e-11
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	2e-10
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	8e-08
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	4e-07
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	1e-06
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	2e-06
cd03772	137	cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui	2e-06
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	3e-06
smart00061	95	smart00061, MATH, meprin and TRAF homology	5e-06
smart00061	95	smart00061, MATH, meprin and TRAF homology	4e-05
pfam00917	116	pfam00917, MATH, MATH domain	0.001
cd03773	132	cd03773, MATH_TRIM37, Tripartite motif containing	0.001
cd03773	132	cd03773, MATH_TRIM37, Tripartite motif containing	0.002

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 97.8 bits (244), Expect = 3e-25
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 16/140 (11%)

Query: 180 KYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITG 239
           K+ WKI NFS+L  +   S  F  G  KW+I ++P G    SG ++S+YLEL    +   
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNG-DGESGDYLSLYLELDKGESDLE 60

Query: 240 GSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNY 299
              +   FTL++ NQ   K   K     +            W        G+ KFI  + 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFS-----EKGSGW--------GFPKFISWDD 107

Query: 300 LKKAGNGFLVNDVCIVEAEV 319
           L+   + +LV+D   +E EV
Sbjct: 108 LED--SYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 94.8 bits (236), Expect = 4e-24
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 22  HFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTS 81
               KI  FS L     E+  S  F+ GGYKW++ +YPNG+      D++S+YL +    
Sbjct: 2   KHTWKIVNFSELEG---ESIYSPPFEVGGYKWRIRIYPNGDGES--GDYLSLYLELDKGE 56

Query: 82  SLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASN 141
           S    W V   F L +++Q   + L           F      WGF +FI  ++  +  +
Sbjct: 57  SDLEKWSVRAEFTLKLVNQNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLED--S 111

Query: 142 GYLVGDTCVFGAEV 155
            YLV D+     EV
Sbjct: 112 YYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 21/131 (16%)

Query: 30  FSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYL-AMVGTSSLGLGWE 88
           FS + E +   Y S   +  G  W+L +Y NG         + +YL    G     LGW 
Sbjct: 4   FSKIKEGE-NYYTSPYEERFGIPWRLRIYRNG-------GFLGLYLHCEKGEKDELLGWS 55

Query: 89  VYVIFRLFVLDQ--KKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVG 146
           +   F L ++    K            K   F      +G+ +FI  ++     N Y+V 
Sbjct: 56  IETEFTLKLVSDNGKSLTKRN------KSHVFTKPT-GYGWGKFISWDDLE---NDYVVD 105

Query: 147 DTCVFGAEVFV 157
           DT +  AEV +
Sbjct: 106 DTIIIEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 27/144 (18%)

Query: 181 YVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLE----LTDSST 236
           + W+I+N+S+L  K++ S  F  G  +W+ILLFP+G     G  +S+YLE      + + 
Sbjct: 3   FTWRIKNWSELEKKVH-SPKFKCGGFEWRILLFPQGNSQTGG--VSIYLEPHPEEEEKAP 59

Query: 237 ITGGSKIYVHFTLRIRN-QLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFI 295
           +     +   F L I N    S      A  ++           +W        G+++FI
Sbjct: 60  LDEDWSVCAQFALVISNPGDPSIQLSNVAHHRFNAED------KDW--------GFTRFI 105

Query: 296 ELNYLKKAGN----GFLVND-VCI 314
           EL  L          FL N  + I
Sbjct: 106 ELRKLAHRTPDKPSPFLENGELNI 129

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 17  HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVKDHISV 73
            V    ++  I  FS   E   E  KS  F +G     KW L V P G   E+ KD++S+
Sbjct: 1   KVVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSL 59

Query: 74  YLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQR--RFHGLKLEWGFDQFI 131
           YL +V         EV   F+  +L+ K +E      AM  QR  RF   K +WGF +FI
Sbjct: 60  YLLLVSC----PKSEVRAKFKFSILNAKGEET----KAMESQRAYRFVQGK-DWGFKKFI 110

Query: 132 PLEEFINASNGYLVGDTCVFGAEVFV 157
             +  ++ +NG L  D      EV V
Sbjct: 111 RRDFLLDEANGLLPDDKLTLFCEVSV 136

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 27/153 (17%)

Query: 179 YKYVWKIENFSKLPDKIYE---SEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELT 232
           + Y+W I NFS   +++ E   S  F +G     KW + + PKGL   S  ++S+YL L 
Sbjct: 5   FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 233 DSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVV-FATGE-WLNTSIALGG 290
                   S++   F   I N        K  + K ++      F  G+ W        G
Sbjct: 65  SC----PKSEVRAKFKFSILNA-------KGEETKAMESQRAYRFVQGKDW--------G 105

Query: 291 WSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLG 323
           + KFI  ++L    NG L +D   +  EV V+ 
Sbjct: 106 FKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 25/149 (16%)

Query: 181 YVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGG 240
           + WK++ +S+L  K  ES  F  G   WKI+LFP+G    +  ++S+YLE         G
Sbjct: 41  FTWKVKRWSELAKK-VESPPFSVGGHTWKIILFPQG---NNQCNVSVYLEYEPQELEETG 96

Query: 241 SKIY---VHFTLRIRN-QLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIE 296
            K Y     F   I N +  +  Y  K+  ++   S       +W        G++ FI+
Sbjct: 97  GKYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMEST------DW--------GFTNFID 142

Query: 297 LNYLKKAGNG---FLVNDVCIVEAEVPVL 322
           LN L +   G   FL     ++   V VL
Sbjct: 143 LNKLIEPSPGRPPFLEEGTLVITVYVRVL 171

Length = 1089

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
             F  +I+ +S L +       S +F  GG++W+++++P GN   +    +S+YL     
Sbjct: 1   QSFTWRIKNWSELEKK----VHSPKFKCGGFEWRILLFPQGN---SQTGGVSIYLEPHPE 53

Query: 81  SSLGL----GWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEF 136
                     W V   F L V+    D    +Q +     RF+    +WGF +FI L + 
Sbjct: 54  EEEKAPLDEDWSVCAQFAL-VISNPGDPS--IQLSNVAHHRFNAEDKDWGFTRFIELRKL 110

Query: 137 INASNG 142
            + +  
Sbjct: 111 AHRTPD 116

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 19  PPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMV 78
             A F   +E FS L E+ +     +        WK++V P    + N       +    
Sbjct: 1   SEATFSFTVERFSRLSESVLSPPCFVR----NLPWKIMVMPRNYPDRNPHQKSVGFFLQC 56

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRR----FHGLKLEWGFDQFIPLE 134
              S    W  +    L +++ K DE           RR    F   + +WGF  F+   
Sbjct: 57  NAESDSTSWSCHAQAVLRIINYKDDEPSF-------SRRISHLFFSKENDWGFSNFMTWS 109

Query: 135 EFINASNGYLVGDTCVFGAEVFVK 158
           E  +   G++  DT     EV+V+
Sbjct: 110 EVTDPEKGFIEDDTITL--EVYVQ 131

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1 plays several important roles in EBV latent infection and cellular transformation. It binds the same pocket as p53 in the HAUSP TRAF-like domain. Through interactions with p53, MDM2 and EBNA1, HAUSP plays a role in cell proliferation, apoptosis and EBV-mediated immortalization. Length = 137

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 21  AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGT 80
             F  K++ +S L +      +S  F  GG+ WK++++P GN   NV    SVYL     
Sbjct: 39  MSFTWKVKRWSELAKK----VESPPFSVGGHTWKIILFPQGNNQCNV----SVYLEYEPQ 90

Query: 81  SSLGLGWEVYVIFRLF--VLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFIN 138
                G + Y     F   +   K   +   +      RF     +WGF  FI L + I 
Sbjct: 91  ELEETGGKYYDCCAQFAFDISNPKYPTIEYINK--SHHRFSMESTDWGFTNFIDLNKLIE 148

Query: 139 ASNGY 143
            S G 
Sbjct: 149 PSPGR 153

Length = 1089

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 23/115 (20%)

Query: 182 VWKIENFSKL-PDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGG 240
               +N S+L   + Y S      +  W++ ++ K         +S+YL        +  
Sbjct: 3   SHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRK 56

Query: 241 SKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFI 295
             I   FTL++ +Q   K   KK K  + K S                 G+SKFI
Sbjct: 57  WSIEAEFTLKLVSQN-GKSLSKKDKHVFEKPSGW---------------GFSKFI 95

Length = 95

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 15/106 (14%)

Query: 26  KIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGL 85
             +  S L E   E+Y S   +     W+L +Y            +S+YL          
Sbjct: 5   TFKNVSRLEEG--ESYFSPSEEHFNIPWRLKIYRKN-------GFLSLYLHCEKEECDSR 55

Query: 86  GWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFI 131
            W +   F L ++ Q                 F      WGF +FI
Sbjct: 56  KWSIEAEFTLKLVSQNGKSLSKKDKH-----VFEK-PSGWGFSKFI 95

Length = 95

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 33/141 (23%)

Query: 185 IENFSKL--PDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELT-DSSTITGGS 241
           I+NFSK+   +  Y S         W++ ++  G        + +YL           G 
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRNG------GFLGLYLHCEKGEKDELLGW 54

Query: 242 KIYVHFTLRI---RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELN 298
            I   FTL++     + ++K  +     K          TG          GW KFI  +
Sbjct: 55  SIETEFTLKLVSDNGKSLTKRNKSHVFTK---------PTGY---------GWGKFISWD 96

Query: 299 YLKKAGNGFLVNDVCIVEAEV 319
            L+   N ++V+D  I+EAEV
Sbjct: 97  DLE---NDYVVDDTIIIEAEV 114

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 24  LLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL 83
              +E FS+L ++    Y       G   W+L VYP+GN  E   + +SV+L +      
Sbjct: 8   TFTLENFSTLRQSADPVYSDPLNVDGLC-WRLKVYPDGN-GEVRGNFLSVFLEL----CS 61

Query: 84  GLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHG---LKLEWGFDQFIPLEEFINAS 140
           GLG      +R+ ++ Q      I        R F     +   WG+++F  L+  IN  
Sbjct: 62  GLGEASKYEYRVEMVHQANPTKNIK-------REFASDFEVGECWGYNRFFRLDLLIN-- 112

Query: 141 NGYL 144
            GYL
Sbjct: 113 EGYL 116

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs in vitro, however, it is unclear whether this is physiologically relevant. Eleven TRIM37 mutations have been associated with Mulibrey nanism so far. One mutation, Gly322Val, is located in the MATH domain and is the only mutation that does not affect the length of the protein. It results in the incorrect subcellular localization of TRIM37. Length = 132

>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 182 VWKIENFSKLP---DKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTIT 238
            + +ENFS L    D +Y   + V G   W++ ++P G G   G+ +S++LEL       
Sbjct: 8   TFTLENFSTLRQSADPVYSDPLNVDG-LCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEA 66

Query: 239 G 239
            
Sbjct: 67  S 67

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs in vitro, however, it is unclear whether this is physiologically relevant. Eleven TRIM37 mutations have been associated with Mulibrey nanism so far. One mutation, Gly322Val, is located in the MATH domain and is the only mutation that does not affect the length of the protein. It results in the incorrect subcellular localization of TRIM37. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.95
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.95
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.94
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.94
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.94
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.93
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.93
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.92
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.91
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.91
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.91
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.91
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.9
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.9
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.9
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.89
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.88
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.87
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.83
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.83
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.81
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.8
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.8
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.79
smart00061	95	MATH meprin and TRAF homology.	99.71
smart00061	95	MATH meprin and TRAF homology.	99.7
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.53
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.45
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.09
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.54
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.14
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.05
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.24
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.11

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.95  E-value=8e-27  Score=186.40  Aligned_cols=130  Identities=18%  Similarity=0.309  Sum_probs=109.0

Q ss_pred             CceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCC--CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 020276          178 NYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGV--ASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQL  255 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~--~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~  255 (328)
                      +++|+|+|.|||.+ ++.+.|+.|.+||++|+|++||+|+..  +..++||+||+|.+... ...|++.|+|+|+|+||+
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCCCeEEEEEEEEEEcCC
Confidence            68999999999998 578999999999999999999999654  23479999999976533 348999999999999998


Q ss_pred             CCc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEe
Q 020276          256 VSK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLG  323 (328)
Q Consensus       256 ~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~  323 (328)
                      ++. ...+...              +.|......|||++||+|++|+++.+|||+||+|+|||+|+|-.
T Consensus        80 ~~~~~~~~~~~--------------~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          80 DDEPSFSRRIS--------------HLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CCcccEEEeee--------------eEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            533 2222332              67866677999999999999987778999999999999999865

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.95  E-value=1.3e-26  Score=185.21  Aligned_cols=130  Identities=22%  Similarity=0.377  Sum_probs=109.6

Q ss_pred             CcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEE
Q 020276           20 PAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNE-NVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVL   98 (328)
Q Consensus        20 ~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~-~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~   98 (328)
                      .++|+|+|+|||.+    ++.++|+.|.+||++|+|.+||+|.... +..+||||||.|.+.. ....|++.|+|+|+|+
T Consensus         2 ~~~~~~~I~~~S~l----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~   76 (137)
T cd03772           2 EATFSFTVERFSRL----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRII   76 (137)
T ss_pred             CcEEEEEECCcccC----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEE
Confidence            58999999999998    4789999999999999999999996521 3358999999997653 3347999999999999


Q ss_pred             eCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           99 DQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        99 n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      |++++.......   ..+.|......|||.+||+|++|+++++|||+||+|+|+|+|+|
T Consensus        77 ~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~  132 (137)
T cd03772          77 NYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA  132 (137)
T ss_pred             cCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence            998644433333   45678766689999999999999887899999999999999998

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.94  E-value=1.7e-26  Score=183.73  Aligned_cols=125  Identities=24%  Similarity=0.538  Sum_probs=106.9

Q ss_pred             EEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEE
Q 020276           22 HFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSS----LGLGWEVYVIFRLFV   97 (328)
Q Consensus        22 ~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~----~~~~w~~~~~~~~~l   97 (328)
                      +|+|+|+|||.+    ++.+.|++|.+|||+|+|.+||+|+. +  .+|+||||.+...+.    .+.+|.+.|+|+|+|
T Consensus         2 ~f~w~I~~fS~~----~~~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l   74 (134)
T cd03775           2 SFTWRIKNWSEL----EKKVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVI   74 (134)
T ss_pred             cEEEEECCcccC----CcceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEE
Confidence            599999999997    57899999999999999999999976 2  789999999976543    256899999999999


Q ss_pred             EeCCCCceeEeecccCceeeecCCCCCCCccccccccccccC----CCCeeeCCEEEEEEEEE
Q 020276           98 LDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINA----SNGYLVGDTCVFGAEVF  156 (328)
Q Consensus        98 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~~~l~dd~l~i~~~v~  156 (328)
                      +||.++.......   ..+.|+....+|||.+||++++|++|    ++|||+||+|+|+|.|+
T Consensus        75 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          75 SNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             EcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            9998665444333   57889877789999999999999954    57999999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.94  E-value=3.3e-26  Score=183.34  Aligned_cols=132  Identities=33%  Similarity=0.484  Sum_probs=110.2

Q ss_pred             CCCcEEEEEEcCcccccccCCCeEEcCcEEecCc---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEE
Q 020276           18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFR   94 (328)
Q Consensus        18 ~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~---~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~   94 (328)
                      +...+|+|+|+|||.+.+..++.+.|++|.+||+   +|+|.+||+|.. ++..+|+||||++...+    .+++.|+|+
T Consensus         2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f~   76 (139)
T cd03774           2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK   76 (139)
T ss_pred             ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEEE
Confidence            4678999999999998654577999999999995   999999999986 45678999999997643    367999999


Q ss_pred             EEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           95 LFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        95 ~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      |.|+|+.+.+.......  ..+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|
T Consensus        77 ~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V  136 (139)
T cd03774          77 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  136 (139)
T ss_pred             EEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence            99999987654332221  3466765 478999999999999877789999999999999998

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.94  E-value=1e-25  Score=179.25  Aligned_cols=124  Identities=29%  Similarity=0.446  Sum_probs=104.1

Q ss_pred             eEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEEEcCC
Q 020276          180 KYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSST----ITGGSKIYVHFTLRIRNQL  255 (328)
Q Consensus       180 ~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~----~~~~w~~~~~~~~~l~~~~  255 (328)
                      +|+|+|.|||.+. +.+.|++|.+||++|+|++||+|+..  .+|+|+||++.+...    .+.+|++.|+|+|.|+||.
T Consensus         2 ~f~w~I~~fS~~~-~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSELE-KKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccCC-cceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            6999999999974 67999999999999999999999865  579999999976432    2568999999999999997


Q ss_pred             CCcee-eeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccC----CCCeEECCEEEEEEEEE
Q 020276          256 VSKHY-EKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKA----GNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       256 ~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~gfl~~D~l~i~~~V~  320 (328)
                      ++... .....              +.|.....+|||.+||++++|+++    ++|||+||+|+|+|.|.
T Consensus        79 ~~~~~~~~~~~--------------~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAH--------------HRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccce--------------eEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            65432 22222              889877789999999999999954    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.93  E-value=3.3e-25  Score=177.54  Aligned_cols=129  Identities=28%  Similarity=0.442  Sum_probs=106.3

Q ss_pred             CceEEEEEcccccCC---CceeecCceEeCCe---eEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276          178 NYKYVWKIENFSKLP---DKIYESEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRI  251 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l  251 (328)
                      ..+|+|+|.+||++.   ++.+.|++|.+||+   +|+|++||+|+..+..+|+|+||++++.    ..+++.|+|+|.|
T Consensus         4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~----~~~~v~a~f~~~l   79 (139)
T cd03774           4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI   79 (139)
T ss_pred             EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC----CCCcEEEEEEEEE
Confidence            578999999999874   56899999999984   9999999999876667899999999753    2467999999999


Q ss_pred             EcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEe
Q 020276          252 RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLG  323 (328)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~  323 (328)
                      +||+++........            ..+.|. ...+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        80 ~n~~~~~~~~~~~~------------~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          80 LNAKGEETKAMESQ------------RAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EecCCCeeeeeccc------------CcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            99987643211111            125675 457899999999999987668999999999999999986

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=3e-25  Score=177.76  Aligned_cols=134  Identities=22%  Similarity=0.308  Sum_probs=107.2

Q ss_pred             cEEEEEEcCcccccc--cCCC--eEEcCcE--EecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276           21 AHFLLKIEAFSSLVE--NDVE--NYKSLEF--DAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF   93 (328)
Q Consensus        21 ~~~~w~I~nfs~~~~--~~~~--~~~S~~f--~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~   93 (328)
                      |.|.|+|++|+.+++  ..+.  .++|++|  .++||+|+|++||||.+ .+.++|+||||++++++.+ ...|++.+++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~   79 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV   79 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence            689999999999875  2455  7999999  89999999999999988 5568899999999987543 4579999999


Q ss_pred             EEEEEeCCCCceeEe-eccc-CceeeecCC----CCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276           94 RLFVLDQKKDEFLIL-QDAM-GKQRRFHGL----KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV  155 (328)
Q Consensus        94 ~~~l~n~~~~~~~~~-~~~~-~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v  155 (328)
                      +|+|+||.+.+.... .-.. ...+.|...    +..||+.+||++++|+..+.+||+||++.|+|.|
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            999999976543211 0000 023568655    4579999999999998434599999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=6.4e-25  Score=174.96  Aligned_cols=134  Identities=25%  Similarity=0.327  Sum_probs=104.3

Q ss_pred             cEEEEEEcCcccccc-c---CCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276           21 AHFLLKIEAFSSLVE-N---DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF   93 (328)
Q Consensus        21 ~~~~w~I~nfs~~~~-~---~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~   93 (328)
                      |.+.|+|+||+++.+ .   ....++||+|..+  ||+|+|++||||.+ .+.++|+||||++++++.+ ..+|++.+++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~   79 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV   79 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence            689999999998766 2   2347999999876  99999999999988 4568899999999986432 4579999999


Q ss_pred             EEEEEeCCCCceeEeeccc-Cceeeec----CCCCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276           94 RLFVLDQKKDEFLILQDAM-GKQRRFH----GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV  155 (328)
Q Consensus        94 ~~~l~n~~~~~~~~~~~~~-~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v  155 (328)
                      +|+|+||.+.+........ ...+.|.    ..+..||+.+||++++|+....+||+||++.|+|+|
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            9999999764432111110 0135686    334579999999999998322499999999999998

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.3e-24  Score=180.20  Aligned_cols=138  Identities=19%  Similarity=0.231  Sum_probs=108.7

Q ss_pred             ccCCCcEEEEEEcCcccccc--cCCC--eEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe
Q 020276           16 SHVPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE   88 (328)
Q Consensus        16 ~~~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~   88 (328)
                      ....+|.|.|+|.+|+.+++  ..+.  .++|++|.+|  ||+|+|++||||.+ .+.++|+||||++++++.+ ...|+
T Consensus        34 ~~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP  112 (186)
T cd03777          34 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP  112 (186)
T ss_pred             ccccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCc
Confidence            45568999999999999865  2344  7999999999  99999999999988 4568899999999987532 45799


Q ss_pred             EEEEEEEEEEeCCCCceeEeec--ccCceeeecC-C---CCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276           89 VYVIFRLFVLDQKKDEFLILQD--AMGKQRRFHG-L---KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF  156 (328)
Q Consensus        89 ~~~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~-~---~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~  156 (328)
                      +.++++|+|+||.+........  .......|.. .   +..||+.+||++++|+  +++||+||+|.|+|.|.
T Consensus       113 ~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         113 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             eeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            9999999999997532211100  0002345752 2   3579999999999999  68899999999999885

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.4e-24  Score=172.95  Aligned_cols=133  Identities=17%  Similarity=0.232  Sum_probs=104.9

Q ss_pred             ceEEEEEcccccCC-----C--ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276          179 YKYVWKIENFSKLP-----D--KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT  248 (328)
Q Consensus       179 ~~~~w~I~nfs~~~-----~--~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~  248 (328)
                      |++.|+|.||+++.     +  ..++||.|..+  ||+|+|++||||.+.+.++|+|+||+++++. +..+.|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            57999999999765     1  36899999987  9999999999999887788999999998763 4446899999999


Q ss_pred             EEEEcCCCCceeeeeeeeeceeeeeeeeccceecc----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          249 LRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      |.|++|.+..+......       +.  ...+.|.    ..+.+||+++||++++|+...++||+||+++|+|+|.
T Consensus        81 fsLlDq~~~~~~~~~~~-------~~--~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          81 FMLLDQNNREHVIDAFR-------PD--LSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEECCCCCCCCcEeec-------CC--cccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            99999976543211111       00  0125575    3456899999999999987445899999999999984

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.5e-24  Score=173.68  Aligned_cols=133  Identities=17%  Similarity=0.242  Sum_probs=105.6

Q ss_pred             ceEEEEEcccccCC-----Cc--eeecCce--EeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276          179 YKYVWKIENFSKLP-----DK--IYESEVF--VAGDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT  248 (328)
Q Consensus       179 ~~~~w~I~nfs~~~-----~~--~~~S~~f--~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~  248 (328)
                      +++.|+|.+|++++     +.  .+.|++|  .++||+|+|++||||.+.+.++|||+||++++++ +....|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            57999999999986     23  7999999  8999999999999999887888999999998763 3347899999999


Q ss_pred             EEEEcCCCCcee-eeeeeeeceeeeeeeeccceeccCC----cCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          249 LRIRNQLVSKHY-EKKAKCKYLKVSIVVFATGEWLNTS----IALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       249 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      |.|++|.+.... .....     .+|    ..+.|...    +.+||+++||++++|+...++||+||+|+|+|.|.
T Consensus        81 fsLlDq~~~~~~~~~~~~-----~~~----~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~  148 (148)
T cd03780          81 LMLLDQSGKKNHIMETFK-----ADP----NSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD  148 (148)
T ss_pred             EEEECCCCCCCCcceeee-----cCC----ccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence            999999754311 11110     001    12557544    56899999999999987446999999999999873

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=2.4e-24  Score=171.15  Aligned_cols=127  Identities=27%  Similarity=0.449  Sum_probs=104.6

Q ss_pred             CCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276           18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFV   97 (328)
Q Consensus        18 ~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l   97 (328)
                      +..++++|+|+|||.+.+ .++.++|++|.+|||+|+|.+||+|.. ++..+|||+||.+..+.    .|.+.++|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~-~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~l   75 (132)
T cd03773           2 PPYDSATFTLENFSTLRQ-SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEM   75 (132)
T ss_pred             CCCcccEEEECChhhhhc-CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEE
Confidence            356789999999999854 467899999999999999999999987 45678999999987642    367889999999


Q ss_pred             EeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeC--CEEEEEEEEE
Q 020276           98 LDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVG--DTCVFGAEVF  156 (328)
Q Consensus        98 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~d--d~l~i~~~v~  156 (328)
                      +||.++.......   ..+.|.. ..+|||.+||++++|.  ++|||.|  |+|+|+|.|+
T Consensus        76 lnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          76 VHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             EcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence            9995443333333   4567865 4679999999999998  5799999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.92  E-value=1.2e-24  Score=175.77  Aligned_cols=133  Identities=21%  Similarity=0.298  Sum_probs=104.3

Q ss_pred             cEEEEEEcCcccccc--cCCC--eEEcCcEEe--cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCCeEEEEE
Q 020276           21 AHFLLKIEAFSSLVE--NDVE--NYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSS-LGLGWEVYVIF   93 (328)
Q Consensus        21 ~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~~~~   93 (328)
                      |.|.|+|.+||.+++  ..++  .++|++|.+  |||+|+|++||+|.. ++..+||||||++.+++. ...+|++.+++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~   79 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI   79 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence            689999999998655  2455  388999985  799999999999987 456789999999988654 25679999999


Q ss_pred             EEEEEeCCCCceeEee--cccCceeeecC-----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276           94 RLFVLDQKKDEFLILQ--DAMGKQRRFHG-----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF  156 (328)
Q Consensus        94 ~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~  156 (328)
                      +|+|+||.++......  ........|..     ....|||.+||++++|+  +++||+||+|+|+|+|.
T Consensus        80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence            9999999864332110  00002345763     23579999999999998  57899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.91  E-value=3e-24  Score=174.21  Aligned_cols=132  Identities=27%  Similarity=0.420  Sum_probs=104.2

Q ss_pred             cEEEEEEcCcccccc----cCCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276           21 AHFLLKIEAFSSLVE----NDVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF   93 (328)
Q Consensus        21 ~~~~w~I~nfs~~~~----~~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~   93 (328)
                      |+|+|+|++||.+++    ..++.++|+.|.+|  ||+|+|++||+|.. ++..+||||||++.++..+ ..+|++.|+|
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~   79 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI   79 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence            689999999999865    24578999999999  99999999999986 4456899999999887543 5679999999


Q ss_pred             EEEEEeCCCC--ceeEeec--ccCceeeec-----CCCCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276           94 RLFVLDQKKD--EFLILQD--AMGKQRRFH-----GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV  155 (328)
Q Consensus        94 ~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v  155 (328)
                      +|.|+||.++  .......  .......|.     ....+|||.+||++++|+  +++||+||+|+|+|+|
T Consensus        80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v  148 (149)
T cd00270          80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV  148 (149)
T ss_pred             EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence            9999999874  1211100  000123454     134789999999999998  4689999999999998

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.91  E-value=3.6e-24  Score=170.09  Aligned_cols=122  Identities=21%  Similarity=0.384  Sum_probs=101.3

Q ss_pred             CceEEEEEcccccCC--CceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 020276          178 NYKYVWKIENFSKLP--DKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQL  255 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~--~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~  255 (328)
                      ..+++|+|.+||.+.  ++.+.|+.|.+||++|+|++||+|+..+.++|||+||++.++    ..|.+.++|+|+|+||.
T Consensus         4 ~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~llnq~   79 (132)
T cd03773           4 YDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVHQA   79 (132)
T ss_pred             CcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEcCC
Confidence            678999999999985  468999999999999999999999887667899999998754    24678899999999995


Q ss_pred             CCc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEEC--CEEEEEEEEE
Q 020276          256 VSK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVN--DVCIVEAEVP  320 (328)
Q Consensus       256 ~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~--D~l~i~~~V~  320 (328)
                      ++. +......              +.|.. ..+|||.+||++++|++  +|||+|  |+|+|+|.|+
T Consensus        80 ~~~~~~~~~~~--------------~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          80 NPTKNIKREFA--------------SDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCccceEEecc--------------ccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            433 2222222              66754 56799999999999986  699999  9999999986

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.91  E-value=3.9e-24  Score=173.80  Aligned_cols=133  Identities=25%  Similarity=0.369  Sum_probs=105.0

Q ss_pred             cEEEEEEcCcccccc---c-CCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEEE
Q 020276           21 AHFLLKIEAFSSLVE---N-DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVIF   93 (328)
Q Consensus        21 ~~~~w~I~nfs~~~~---~-~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~~   93 (328)
                      |.|.|+|++|+.+++   . .++.+.|++|.+|  ||+|+|++||||.. ++..+|+|+||++++++.+ ...|++.+++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~   79 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI   79 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence            689999999999875   2 3578999999999  99999999999987 5568899999999986543 2589999999


Q ss_pred             EEEEEeCCCCc--e--eEeec--ccCceeeecC--------CCCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276           94 RLFVLDQKKDE--F--LILQD--AMGKQRRFHG--------LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF  156 (328)
Q Consensus        94 ~~~l~n~~~~~--~--~~~~~--~~~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~  156 (328)
                      +|+|+||.+..  .  .....  .......|+.        .+..||+.+||++++|+  +++||+||+|+|+|+|.
T Consensus        80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~  154 (154)
T cd03781          80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence            99999997641  1  11000  0002344553        33569999999999999  68999999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.91  E-value=3e-24  Score=174.19  Aligned_cols=131  Identities=20%  Similarity=0.323  Sum_probs=103.0

Q ss_pred             ceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276          179 YKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT  248 (328)
Q Consensus       179 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~  248 (328)
                      ++|+|+|.+|++++       ++.+.|+.|.+|  |++|+|++||+|...+.++|||+||++.++. +....|++.++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            57999999999974       258899999999  9999999999998766678999999998764 3346899999999


Q ss_pred             EEEEcCCCC---ceeeeeeeeeceeeeeeeeccceecc-----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          249 LRIRNQLVS---KHYEKKAKCKYLKVSIVVFATGEWLN-----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       249 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      |.|+||.++   .+......       +.  ...+.|.     ....+|||.+||++++|++  +|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~-------~~--~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFM-------PD--PNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEE-------cC--CchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999874   12111110       00  0113453     1457899999999999987  5999999999999984

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=8.8e-24  Score=170.11  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=108.6

Q ss_pred             cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 020276          176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYV  245 (328)
Q Consensus       176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~  245 (328)
                      +.+++|+|+|+||+++..       ..++||.|..+  ||+|+|++||||++.+.++|||+|+++++++.++ +.|+++.
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~   95 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence            348999999999998762       36889999875  8999999999999988889999999999996544 8999999


Q ss_pred             EEEEEEEcCCCCceeeeeeeeeceeeeeeeeccceec----cCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          246 HFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWL----NTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F----~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      +++|.|+||++.++......       |..  ....|    +..+.+|||+.|+++++|+.. +|||+||+|.|+|.|.
T Consensus        96 ~itl~llDQ~~r~hi~~~~~-------pd~--~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~Vd  164 (164)
T cd03778          96 KVTLMLLDQNNREHVIDAFR-------PDV--TSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIVD  164 (164)
T ss_pred             EEEEEEECCCCCCcceeEEE-------cCc--chHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEEC
Confidence            99999999987665432221       110  11234    234568999999999999864 5999999999999873

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=1.6e-23  Score=173.68  Aligned_cols=135  Identities=18%  Similarity=0.279  Sum_probs=107.1

Q ss_pred             cCCceEEEEEcccccCC-----Cc--eeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEE
Q 020276          176 TSNYKYVWKIENFSKLP-----DK--IYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYV  245 (328)
Q Consensus       176 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~  245 (328)
                      ..+|.|.|+|.+|++.+     ++  .+.|++|.++  ||+|+|++||||.+.+.++|||+||++++++ +....|++.+
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~  115 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  115 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence            34799999999999875     23  6999999999  9999999999999887788999999999873 4456899999


Q ss_pred             EEEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceecc-CC---cCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          246 HFTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLN-TS---IALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       246 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~-~~---~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      +++|.|++|.+.. +....       +.|..  ....|. ..   +.+||+++||++++|+.  ++||+||+|+|+|.|.
T Consensus       116 ~~tfsLlDQ~~~~~~~~~~-------~~p~p--~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~  184 (186)
T cd03777         116 KVTLMLMDQGSSRRHLGDA-------FKPDP--NSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD  184 (186)
T ss_pred             EEEEEEEcCCCccccccce-------eccCC--ccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence            9999999997421 21111       11110  114465 22   55899999999999987  6999999999999986


Q ss_pred             E
Q 020276          321 V  321 (328)
Q Consensus       321 i  321 (328)
                      .
T Consensus       185 ~  185 (186)
T cd03777         185 T  185 (186)
T ss_pred             c
Confidence            3

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.90  E-value=5.1e-24  Score=172.15  Aligned_cols=131  Identities=21%  Similarity=0.216  Sum_probs=101.5

Q ss_pred             ceEEEEEcccccCC-----Cc--eeecCceEe--CCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEEE
Q 020276          179 YKYVWKIENFSKLP-----DK--IYESEVFVA--GDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHFT  248 (328)
Q Consensus       179 ~~~~w~I~nfs~~~-----~~--~~~S~~f~~--~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~~  248 (328)
                      ++|+|+|.+||+++     ++  .+.|+.|.+  +|++|+|++||+|...+..+|||+||+++++. +....|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            57999999999754     23  488999985  79999999999999877778999999998764 2346799999999


Q ss_pred             EEEEcCCCCce-eeeeeeeeceeeeeeeeccceeccC-----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          249 LRIRNQLVSKH-YEKKAKCKYLKVSIVVFATGEWLNT-----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       249 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      |.|++|.++.. ......       +.  ...+.|..     .+.+|||.+||++++|++  ++||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~-------~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMM-------SK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEE-------cC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            99999986432 111110       00  01145652     346899999999999987  5899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.90  E-value=2.6e-23  Score=168.68  Aligned_cols=132  Identities=20%  Similarity=0.320  Sum_probs=101.7

Q ss_pred             CcEEEEEEcCcccccc--cCCCeEEcCcE-EecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe-EEEEEE
Q 020276           20 PAHFLLKIEAFSSLVE--NDVENYKSLEF-DAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE-VYVIFR   94 (328)
Q Consensus        20 ~~~~~w~I~nfs~~~~--~~~~~~~S~~f-~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~-~~~~~~   94 (328)
                      +..|.|+|++||.+++  ..++.++|++| .+|||+|+|++||+|.. + ..+||||||++++++.+ ..+|+ +.++++
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t   78 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT   78 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence            4689999999999963  35778999998 99999999999999988 4 67899999999987543 67899 589999


Q ss_pred             EEEEeCCCCce---eE----eeccc--C---ceeeecC-----------------CCCCCCccccccccccccCCCCeee
Q 020276           95 LFVLDQKKDEF---LI----LQDAM--G---KQRRFHG-----------------LKLEWGFDQFIPLEEFINASNGYLV  145 (328)
Q Consensus        95 ~~l~n~~~~~~---~~----~~~~~--~---~~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~~~l~  145 (328)
                      |+|+||.+...   +.    ..+..  .   ....|..                 .+.+|||.+||++++|.  +.+||+
T Consensus        79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk  156 (167)
T cd03771          79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK  156 (167)
T ss_pred             EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence            99999974211   11    11100  0   0011322                 22479999999999999  577999


Q ss_pred             CCEEEEEEEE
Q 020276          146 GDTCVFGAEV  155 (328)
Q Consensus       146 dd~l~i~~~v  155 (328)
                      ||+|.|++++
T Consensus       157 ~dtl~i~~~~  166 (167)
T cd03771         157 GDDLIILLDF  166 (167)
T ss_pred             CCEEEEEEEe
Confidence            9999999987

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.90  E-value=2.3e-23  Score=169.29  Aligned_cols=135  Identities=21%  Similarity=0.264  Sum_probs=103.2

Q ss_pred             ceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 020276          179 YKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSSTI-TGGSKIYVHFT  248 (328)
Q Consensus       179 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~-~~~w~~~~~~~  248 (328)
                      +.|.|+|.+|+.++       +..+.|+.|.+|  |++|+|++||+|...+.++|+|+||++++++.. ...|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57999999999875       257999999999  999999999999988778899999999986432 35899999999


Q ss_pred             EEEEcCCCCc-eeeeeeeeeceeeeeeeeccceeccC--------CcCCCCcccceeccccccCCCCeEECCEEEEEEEE
Q 020276          249 LRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLNT--------SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEV  319 (328)
Q Consensus       249 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V  319 (328)
                      |+|++|.++. ....... ..++..    .....|..        .+.+||+.+||++++|+.  ++||+||+|+|+|+|
T Consensus        81 ~~llDq~~~~~~~~~~~~-~~~~~~----~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v  153 (154)
T cd03781          81 FTLLDQSDPSLSKPQHIT-ETFTPD----PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASV  153 (154)
T ss_pred             EEEECCCCCccccCcceE-EEEEcC----CchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEe
Confidence            9999998641 1100000 000000    01244542        446799999999999987  689999999999998


Q ss_pred             E
Q 020276          320 P  320 (328)
Q Consensus       320 ~  320 (328)
                      +
T Consensus       154 ~  154 (154)
T cd03781         154 E  154 (154)
T ss_pred             C
Confidence            4

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=4e-23  Score=166.32  Aligned_cols=138  Identities=24%  Similarity=0.386  Sum_probs=108.3

Q ss_pred             eeccCCCcEEEEEEcCccccccc--C--CCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CC
Q 020276           14 SISHVPPAHFLLKIEAFSSLVEN--D--VENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LG   86 (328)
Q Consensus        14 ~~~~~~~~~~~w~I~nfs~~~~~--~--~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~   86 (328)
                      .......|.|.|+|+||+++.+.  .  ...++||+|..+  ||+|+|++||||++ .+.+.||||||++++++.++ .+
T Consensus        12 l~~~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~   90 (164)
T cd03778          12 XEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLR   90 (164)
T ss_pred             ccccccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccC
Confidence            33456689999999999998762  2  347999999754  89999999999987 45678999999999998775 89


Q ss_pred             CeEEEEEEEEEEeCCCCceeEe---ecccCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEE
Q 020276           87 WEVYVIFRLFVLDQKKDEFLIL---QDAMGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEV  155 (328)
Q Consensus        87 w~~~~~~~~~l~n~~~~~~~~~---~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v  155 (328)
                      ||+..+++|+|+||++......   .+.  ....|.+    .+..|||..|+++++|..+ .+||+||+|.|+|.|
T Consensus        91 WPf~~~itl~llDQ~~r~hi~~~~~pd~--~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          91 WPFNQKVTLMLLDQNNREHVIDAFRPDV--TSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             CceeeEEEEEEECCCCCCcceeEEEcCc--chHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            9999999999999975333211   010  1113532    2456999999999999842 699999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.89  E-value=1.7e-22  Score=164.01  Aligned_cols=138  Identities=18%  Similarity=0.256  Sum_probs=102.2

Q ss_pred             ceEEEEEcccccCC-----CceeecCce-EeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCe-EEEEEEEE
Q 020276          179 YKYVWKIENFSKLP-----DKIYESEVF-VAGDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSK-IYVHFTLR  250 (328)
Q Consensus       179 ~~~~w~I~nfs~~~-----~~~~~S~~f-~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~-~~~~~~~~  250 (328)
                      .+|+|+|.+||+++     +..+.|++| .++|++|+|++||+|+.. .++||||||++++++ +..+.|+ +.++++|+
T Consensus         2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~   80 (167)
T cd03771           2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATMT   80 (167)
T ss_pred             CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence            47999999999985     247999998 899999999999999987 788999999998763 3457899 58999999


Q ss_pred             EEcCCCCceeeeeeeeeceeeeeee---------eccc----eeccC-------CcCCCCcccceeccccccCCCCeEEC
Q 020276          251 IRNQLVSKHYEKKAKCKYLKVSIVV---------FATG----EWLNT-------SIALGGWSKFIELNYLKKAGNGFLVN  310 (328)
Q Consensus       251 l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~F~~-------~~~~~G~~~fi~~~~L~~~~~gfl~~  310 (328)
                      |++|..... .+....+..++.|..         ++..    ..+..       .+.+|||++||++++|+.  ++||+|
T Consensus        81 LlDQ~~~~~-~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~  157 (167)
T cd03771          81 LLDQDPDIQ-QRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG  157 (167)
T ss_pred             EECCCCccc-ccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence            999963211 111111122333310         1111    11221       446899999999999998  579999


Q ss_pred             CEEEEEEEEE
Q 020276          311 DVCIVEAEVP  320 (328)
Q Consensus       311 D~l~i~~~V~  320 (328)
                      |+|.|+++++
T Consensus       158 dtl~i~~~~~  167 (167)
T cd03771         158 DDLIILLDFE  167 (167)
T ss_pred             CEEEEEEEeC
Confidence            9999999874

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.88  E-value=8.7e-22  Score=154.40  Aligned_cols=125  Identities=34%  Similarity=0.473  Sum_probs=104.2

Q ss_pred             ceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCc
Q 020276          179 YKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSK  258 (328)
Q Consensus       179 ~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~~  258 (328)
                      ++|+|+|.+|+...++.+.|+.|.++|++|+|.+||+|... ..+|+|+||+|.........|++.++++|.|++|++++
T Consensus         1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (126)
T cd00121           1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK   79 (126)
T ss_pred             CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence            47999999999956678999999999999999999999865 46799999999876544568999999999999998555


Q ss_pred             eeeeeeeeeceeeeeeeeccceecc-CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          259 HYEKKAKCKYLKVSIVVFATGEWLN-TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      ...+...              +.|. ....+|||.+||++++|+++  ++++||+|+|+|+|.
T Consensus        80 ~~~~~~~--------------~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~  126 (126)
T cd00121          80 SLSKSFT--------------HVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK  126 (126)
T ss_pred             cceEecc--------------CCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence            4444433              4443 46789999999999999984  449999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.87  E-value=5.2e-21  Score=149.94  Aligned_cols=125  Identities=33%  Similarity=0.535  Sum_probs=101.9

Q ss_pred             cEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 020276           21 AHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQ  100 (328)
Q Consensus        21 ~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n~  100 (328)
                      ++|+|+|.+|+..   .++.++|+.|.++|+.|+|.+||+|.. . ..+||||||+|.........|++.++|+|+|+|+
T Consensus         1 ~~~~~~i~~~~~~---~~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~   75 (126)
T cd00121           1 GKHTWKIVNFSEL---EGESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQ   75 (126)
T ss_pred             CEEEEEECCCCCC---CCcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECC
Confidence            4799999999993   368999999999999999999999976 2 5789999999988765456799999999999999


Q ss_pred             CCCceeEeecccCceeeec-CCCCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276          101 KKDEFLILQDAMGKQRRFH-GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF  156 (328)
Q Consensus       101 ~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~  156 (328)
                      ++.+.....    ..+.|. ....+|||.+||++++|++  ..++.||+|+|+|+|.
T Consensus        76 ~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          76 NGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             CCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            844433222    233442 4468999999999999993  4449999999999983

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.83  E-value=1.6e-20  Score=146.20  Aligned_cols=116  Identities=32%  Similarity=0.474  Sum_probs=94.1

Q ss_pred             EcccccCC-C-ceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEcCCCCceee
Q 020276          185 IENFSKLP-D-KIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYVHFTLRIRNQLVSKHYE  261 (328)
Q Consensus       185 I~nfs~~~-~-~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~~~  261 (328)
                      |+|||++. + ....|+.|.++|++|+|.+||+|+    ++++++||+|....... ..|++.++++|+|+++.++....
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            68999987 3 334458899999999999999997    46999999998875433 68999999999999998876322


Q ss_pred             eeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEE
Q 020276          262 KKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPV  321 (328)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i  321 (328)
                      ....              +.|. ...+|||.+||++++|+++  .|++||+|+|+|+|+|
T Consensus        77 ~~~~--------------~~F~-~~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 RIKS--------------HSFN-NPSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEC--------------EEEC-TTSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eeee--------------eEEe-eecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            1112              6786 4488999999999999985  4899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.83  E-value=2.6e-20  Score=145.00  Aligned_cols=118  Identities=34%  Similarity=0.587  Sum_probs=96.6

Q ss_pred             EcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCce
Q 020276           27 IEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LGWEVYVIFRLFVLDQKKDEF  105 (328)
Q Consensus        27 I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~~~~~~~l~n~~~~~~  105 (328)
                      |+|||++.+ .+..+.|+.|.++|++|+|.+||+|+     .++||+||+|..+.... .+|++.+++++.|+++.++..
T Consensus         1 i~nfs~l~~-~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~   74 (119)
T PF00917_consen    1 IKNFSKLKE-GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI   74 (119)
T ss_dssp             ETTGGGHHT-SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE
T ss_pred             CcccceEeC-CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc
Confidence            789999973 23344558899999999999999975     57999999999986553 689999999999999988874


Q ss_pred             eEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276          106 LILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus       106 ~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      ....    ..+.|+.. .+|||.+||++++|.++  .|+.||+|+|+|+|+|
T Consensus        75 ~~~~----~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   75 SKRI----KSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEE----ECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eeee----eeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            3321    23788775 88999999999999943  3999999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.81  E-value=1.8e-19  Score=144.43  Aligned_cols=134  Identities=19%  Similarity=0.339  Sum_probs=102.9

Q ss_pred             CcEEEEEEcCccccccc--CCCeEEcCcEEec-CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeE-EEEEE
Q 020276           20 PAHFLLKIEAFSSLVEN--DVENYKSLEFDAG-GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEV-YVIFR   94 (328)
Q Consensus        20 ~~~~~w~I~nfs~~~~~--~~~~~~S~~f~~g-g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~-~~~~~   94 (328)
                      +..+.|+|.||+++.+.  .+..++||+|..+ ||+.+|++||+|+...+.+.|||||+++++++.+ ..+||+ .-+++
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            35689999999998762  5678999999875 9999999999998633567899999999999765 678995 56999


Q ss_pred             EEEEeCCCCce---eE----eecccCc------eeeecCC--------------CCCCCccccccccccccCCCCeeeCC
Q 020276           95 LFVLDQKKDEF---LI----LQDAMGK------QRRFHGL--------------KLEWGFDQFIPLEEFINASNGYLVGD  147 (328)
Q Consensus        95 ~~l~n~~~~~~---~~----~~~~~~~------~~~F~~~--------------~~~~G~~~fi~~~~L~~~~~~~l~dd  147 (328)
                      |+|+||++...   +.    ..+....      ...|..+              +.++||.+||++++|.  +++||+||
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdD  158 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKND  158 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCC
Confidence            99999975221   11    1110000      1124432              3579999999999999  68999999


Q ss_pred             EEEEEEEE
Q 020276          148 TCVFGAEV  155 (328)
Q Consensus       148 ~l~i~~~v  155 (328)
                      +|.|.+++
T Consensus       159 tlfI~~~~  166 (167)
T cd03783         159 DLIIFVDF  166 (167)
T ss_pred             eEEEEEec
Confidence            99999876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.80  E-value=2.3e-19  Score=142.91  Aligned_cols=132  Identities=18%  Similarity=0.346  Sum_probs=102.7

Q ss_pred             CcEEEEEEcCccccccc--CCCeEEcCcEEe-cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEE-EEEE
Q 020276           20 PAHFLLKIEAFSSLVEN--DVENYKSLEFDA-GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVY-VIFR   94 (328)
Q Consensus        20 ~~~~~w~I~nfs~~~~~--~~~~~~S~~f~~-gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~-~~~~   94 (328)
                      +..+.|+|+||+++.+.  .+..++||+|.. .||+.++++||||++ .+ ++|||||+++++++.+ ..+||+. .+++
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit   78 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT   78 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence            35799999999998763  467899999964 599999999999988 33 6899999999999765 6789999 8999


Q ss_pred             EEEEeCCC---CceeEee------cccCc-eeee--cCC-----------------CCCCCccccccccccccCCCCeee
Q 020276           95 LFVLDQKK---DEFLILQ------DAMGK-QRRF--HGL-----------------KLEWGFDQFIPLEEFINASNGYLV  145 (328)
Q Consensus        95 ~~l~n~~~---~~~~~~~------~~~~~-~~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~~~l~  145 (328)
                      |+|+||++   .+.+...      +.... ...|  ..+                 +.++||+.||++++|.  ++.||+
T Consensus        79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik  156 (167)
T cd03782          79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK  156 (167)
T ss_pred             EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence            99999975   2222111      00000 1134  322                 4679999999999999  688999


Q ss_pred             CCEEEEEEEE
Q 020276          146 GDTCVFGAEV  155 (328)
Q Consensus       146 dd~l~i~~~v  155 (328)
                      ||++.|-+++
T Consensus       157 dD~ifi~~~~  166 (167)
T cd03782         157 GDDVIFLLTM  166 (167)
T ss_pred             CCeEEEEEec
Confidence            9999998876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.80  E-value=2.4e-19  Score=142.80  Aligned_cols=138  Identities=17%  Similarity=0.191  Sum_probs=102.8

Q ss_pred             ceEEEEEcccccCC-----CceeecCceEeC-CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEE-EEEEEE
Q 020276          179 YKYVWKIENFSKLP-----DKIYESEVFVAG-DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIY-VHFTLR  250 (328)
Q Consensus       179 ~~~~w~I~nfs~~~-----~~~~~S~~f~~~-g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~-~~~~~~  250 (328)
                      ..++|+|+||+++.     ...++||.|... ||+.++.+||||++.+ ++|||+|+++++++ +..+.||+. -+++|.
T Consensus         2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~   80 (167)
T cd03782           2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM   80 (167)
T ss_pred             CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence            36899999999876     257899988754 9999999999999876 67999999999984 446899999 899999


Q ss_pred             EEcCCCCceeeeeeeeeceeeeeeeecc-ceec--c-----------------CCcCCCCcccceeccccccCCCCeEEC
Q 020276          251 IRNQLVSKHYEKKAKCKYLKVSIVVFAT-GEWL--N-----------------TSIALGGWSKFIELNYLKKAGNGFLVN  310 (328)
Q Consensus       251 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~F--~-----------------~~~~~~G~~~fi~~~~L~~~~~gfl~~  310 (328)
                      |++|++... .+....+++++.|..... +..|  .                 .++.++||+.||++++|+.  +.||+|
T Consensus        81 LlDQ~~d~~-~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd  157 (167)
T cd03782          81 LLDQHPDIR-QRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG  157 (167)
T ss_pred             EEcCCCchh-hccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence            999964211 111111233344321111 1122  1                 1268999999999999998  689999


Q ss_pred             CEEEEEEEEE
Q 020276          311 DVCIVEAEVP  320 (328)
Q Consensus       311 D~l~i~~~V~  320 (328)
                      |++.|-++++
T Consensus       158 D~ifi~~~~e  167 (167)
T cd03782         158 DDVIFLLTME  167 (167)
T ss_pred             CeEEEEEecC
Confidence            9999988763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.79  E-value=6.6e-19  Score=141.18  Aligned_cols=138  Identities=18%  Similarity=0.262  Sum_probs=100.6

Q ss_pred             eEEEEEcccccCC-----CceeecCceEeC-CeeEEEEEecCCCCC-CCCCeEEEEEEecCCC-CCCCCCeE-EEEEEEE
Q 020276          180 KYVWKIENFSKLP-----DKIYESEVFVAG-DQKWKILLFPKGLGV-ASGSHISMYLELTDSS-TITGGSKI-YVHFTLR  250 (328)
Q Consensus       180 ~~~w~I~nfs~~~-----~~~~~S~~f~~~-g~~W~i~~yp~G~~~-~~~~~lsvyL~~~~~~-~~~~~w~~-~~~~~~~  250 (328)
                      .++|+|+||+++.     ...++||.|... ||+.+|++||+|++. +.++|+|+|+++++++ +..+.|++ .-+++|.
T Consensus         3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~   82 (167)
T cd03783           3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIIT   82 (167)
T ss_pred             ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEE
Confidence            5899999999876     257999999875 999999999999874 5678999999999984 44689994 6799999


Q ss_pred             EEcCCCCceeeeeeeeeceeeeee----eeccceecc--------------CCcCCCCcccceeccccccCCCCeEECCE
Q 020276          251 IRNQLVSKHYEKKAKCKYLKVSIV----VFATGEWLN--------------TSIALGGWSKFIELNYLKKAGNGFLVNDV  312 (328)
Q Consensus       251 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~F~--------------~~~~~~G~~~fi~~~~L~~~~~gfl~~D~  312 (328)
                      |++|+.... .+....+..++.+.    .+.....|.              ..+.++||+.||++++|+.  ++||+||+
T Consensus        83 llDQ~~~~~-~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt  159 (167)
T cd03783          83 VLDQDPDVR-LRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD  159 (167)
T ss_pred             EEcCCcchh-hccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence            999964211 11111011222221    000001122              2456899999999999998  79999999


Q ss_pred             EEEEEEEE
Q 020276          313 CIVEAEVP  320 (328)
Q Consensus       313 l~i~~~V~  320 (328)
                      |.|.++++
T Consensus       160 lfI~~~~~  167 (167)
T cd03783         160 LIIFVDFE  167 (167)
T ss_pred             EEEEEecC
Confidence            99999874

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>smart00061 MATH meprin and TRAF homology

Probab=99.71  E-value=1.2e-16  Score=119.08  Aligned_cols=94  Identities=22%  Similarity=0.398  Sum_probs=79.6

Q ss_pred             EEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCC
Q 020276           23 FLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKK  102 (328)
Q Consensus        23 ~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n~~~  102 (328)
                      ++|.|+||+.+.  .++.++|++|.++|++|+|.+||+       .+|||+||.|.+....+.+|++.|+++|+|+|+++
T Consensus         2 ~~~~~~~~~~~~--~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~   72 (95)
T smart00061        2 LSHTFKNVSRLE--EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNG   72 (95)
T ss_pred             ceeEEEchhhcc--cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCC
Confidence            579999999985  367899999999999999999998       47999999998876555589999999999999987


Q ss_pred             CceeEeecccCceeeecCCCCCCCccccc
Q 020276          103 DEFLILQDAMGKQRRFHGLKLEWGFDQFI  131 (328)
Q Consensus       103 ~~~~~~~~~~~~~~~F~~~~~~~G~~~fi  131 (328)
                      +....  .   ..+.|.. ..+|||.+||
T Consensus        73 ~~~~~--~---~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       73 KSLSK--K---DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CEEee--e---eeEEEcC-CCccceeeEC
Confidence            65522  2   5678886 6889999886

>smart00061 MATH meprin and TRAF homology

Probab=99.70  E-value=2.1e-16  Score=117.72  Aligned_cols=93  Identities=25%  Similarity=0.309  Sum_probs=77.5

Q ss_pred             EEEEEcccccCC-CceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCce
Q 020276          181 YVWKIENFSKLP-DKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKH  259 (328)
Q Consensus       181 ~~w~I~nfs~~~-~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~  259 (328)
                      ++|.|++|+.+. ++.+.|+.|.++|++|+|.+||+      ++|||+||+|.+....+.+|++.|+++|+|++|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999984 67899999999999999999999      36999999998775444589999999999999987654


Q ss_pred             eeeeeeeeceeeeeeeeccceeccCCcCCCCcccce
Q 020276          260 YEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFI  295 (328)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi  295 (328)
                       .....              +.|.. ..+|||.+||
T Consensus        76 -~~~~~--------------~~F~~-~~~~G~~~fi   95 (95)
T smart00061       76 -SKKDK--------------HVFEK-PSGWGFSKFI   95 (95)
T ss_pred             -eeeee--------------EEEcC-CCccceeeEC
Confidence             22222              77875 7889999886

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.2e-14  Score=137.92  Aligned_cols=133  Identities=28%  Similarity=0.513  Sum_probs=109.9

Q ss_pred             cCCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCC--C-CCCCeEEEEE
Q 020276           17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSS--L-GLGWEVYVIF   93 (328)
Q Consensus        17 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~--~-~~~w~~~~~~   93 (328)
                      +...-+|+|+|++++.+.    .+++||+|.+||+.|+|.++|+|+.+   .+ .||||+....+.  . ...|.|+|+|
T Consensus        35 e~~~~sftW~vk~wsel~----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqF  106 (1089)
T COG5077          35 ELLEMSFTWKVKRWSELA----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQF  106 (1089)
T ss_pred             HHhhcccceecCChhhhh----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhhe
Confidence            455678999999999994    47899999999999999999999872   23 999999877531  2 2349999999


Q ss_pred             EEEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCC---eeeCCEEEEEEEEEE-eec
Q 020276           94 RLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNG---YLVGDTCVFGAEVFV-KET  160 (328)
Q Consensus        94 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~---~l~dd~l~i~~~v~v-~~~  160 (328)
                      .|.|-|...+.......   ..|+|+....+|||.+|+.+..|..|+.|   |+.+|++.|.+.|+| +++
T Consensus       107 af~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP  174 (1089)
T COG5077         107 AFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP  174 (1089)
T ss_pred             eeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence            99999887654433222   57899998999999999999999876666   789999999999999 776

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.2e-13  Score=131.18  Aligned_cols=132  Identities=27%  Similarity=0.438  Sum_probs=106.9

Q ss_pred             CCceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCC--C-CCCCCeEEEEEEEEEEc
Q 020276          177 SNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSS--T-ITGGSKIYVHFTLRIRN  253 (328)
Q Consensus       177 ~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~--~-~~~~w~~~~~~~~~l~~  253 (328)
                      ....++|+|++|+.+.+ ...||.|.+||+.|+|.++|+|+...   -+||||+....+  . ....|.|+|+|.|.|-+
T Consensus        37 ~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~  112 (1089)
T COG5077          37 LEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISN  112 (1089)
T ss_pred             hhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence            36789999999999985 68899999999999999999998754   389999886442  1 12359999999999999


Q ss_pred             CCCCcee-eeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCC---eEECCEEEEEEEEEEEee-ec
Q 020276          254 QLVSKHY-EKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNG---FLVNDVCIVEAEVPVLGI-SK  326 (328)
Q Consensus       254 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g---fl~~D~l~i~~~V~i~~~-~~  326 (328)
                      +..+... ...+.              |+|+....+|||.+|+.+.+|..|..|   |+.+|++.|.|.|+|++. ||
T Consensus       113 p~~pti~~iN~sH--------------hrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTG  176 (1089)
T COG5077         113 PKYPTIEYINKSH--------------HRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTG  176 (1089)
T ss_pred             CCCCchhhhhccc--------------ccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCcc
Confidence            8765422 22332              889888899999999999999875433   789999999999999975 44

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.09  E-value=7.3e-11  Score=106.61  Aligned_cols=192  Identities=27%  Similarity=0.395  Sum_probs=143.5

Q ss_pred             EEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCC
Q 020276           24 LLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKD  103 (328)
Q Consensus        24 ~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n~~~~  103 (328)
                      .|.+.+|+...    ..++|..|..++..|++.+||.|+       +++.|+.+....    +|.+.++++|++.|+...
T Consensus         7 ~~~~~~~~~~~----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~   71 (297)
T KOG1987|consen    7 TWVISNFSSVG----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSE   71 (297)
T ss_pred             ceeeccCcchh----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCc
Confidence            39999998873    688999999999999999999963       789999887653    699999999999999887


Q ss_pred             ce-eEeecccCceeeec--CCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eeccCCCcee-------eeecc
Q 020276          104 EF-LILQDAMGKQRRFH--GLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKKCTGEC-------LSMKK  172 (328)
Q Consensus       104 ~~-~~~~~~~~~~~~F~--~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~~~~~~~~-------~~~~~  172 (328)
                      ++ .....   ....|.  .-...||+..+++...+.++..||+.++.+.+-+.+.| +.........       .....
T Consensus        72 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~  148 (297)
T KOG1987|consen   72 KYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK  148 (297)
T ss_pred             ceeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccc
Confidence            65 43311   233333  33578999999999999988899999988888877777 4442111000       00111


Q ss_pred             ccc-cCCceEEEEEcccccCCC----ceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecC
Q 020276          173 LTS-TSNYKYVWKIENFSKLPD----KIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTD  233 (328)
Q Consensus       173 p~s-~~~~~~~w~I~nfs~~~~----~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~  233 (328)
                      ++. ..-..|+|.+.+++....    ....+..|..++..|++.++|.+.+......++.||+..+
T Consensus       149 ~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~  214 (297)
T KOG1987|consen  149 PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEAS  214 (297)
T ss_pred             hhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhc
Confidence            220 011789999999998773    2566788999999999999999987665668888988765

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.54  E-value=1.2e-06  Score=79.16  Aligned_cols=121  Identities=30%  Similarity=0.510  Sum_probs=97.1

Q ss_pred             EEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCce-
Q 020276          181 YVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVSKH-  259 (328)
Q Consensus       181 ~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~-  259 (328)
                      +.|.+.+++... ..++|..|..++..|++.+||.|+      +++.|+.+....    +|.+.+.+.|.+.||...+. 
T Consensus         6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~   74 (297)
T KOG1987|consen    6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL   74 (297)
T ss_pred             cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence            448888888776 668889999999999999999984      789999887542    79999999999999987654 


Q ss_pred             eee-eeeeeceeeeeeeeccceeccCC--cCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeec
Q 020276          260 YEK-KAKCKYLKVSIVVFATGEWLNTS--IALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISK  326 (328)
Q Consensus       260 ~~~-~~~~~~~~~~~~~~~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~  326 (328)
                      ... ...              .+|...  ...||+..+++...+.+...||++++.+++-+.+.|.+..+
T Consensus        75 ~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~  130 (297)
T KOG1987|consen   75 STVEEGF--------------SWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG  130 (297)
T ss_pred             eeeeeeE--------------EeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence            333 222              444332  57899999999999998889999999999988888876543

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.3e-06  Score=89.57  Aligned_cols=131  Identities=23%  Similarity=0.200  Sum_probs=105.1

Q ss_pred             CceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCC
Q 020276          178 NYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLVS  257 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~~  257 (328)
                      ....+|...+...+.. ...++.|..++.+|++.+.|+++..   ..+++|+.+...... ..|.+.+++.+.++|..++
T Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~  100 (1093)
T KOG1863|consen   26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNSL---QSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDN  100 (1093)
T ss_pred             cccccccCcCcchhhh-HhcCccccccccceeeeeccccCcc---cceeEEeeeccCCCC-cceEecchhhhccccCCCC
Confidence            3445566666666554 6778899999999999999999843   479999999877554 4599999999999994343


Q ss_pred             cee-eeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeecC
Q 020276          258 KHY-EKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKA  327 (328)
Q Consensus       258 ~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~~  327 (328)
                      ... .+...              |.|.....+||+..|+.++++.++..||+.+|++.++++|+|...++.
T Consensus       101 ~~~~~~~~~--------------h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  101 LPDPEKAIH--------------HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             chhhhhhhh--------------hcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            322 22332              889888899999999999999999999999999999999999877654

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=4.4e-06  Score=87.44  Aligned_cols=131  Identities=21%  Similarity=0.232  Sum_probs=105.4

Q ss_pred             CcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 020276           20 PAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFVLD   99 (328)
Q Consensus        20 ~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l~n   99 (328)
                      ....+|...+...+.    ....|+.|..|+.+|++.+.|+++.    ...+++|+.+...... ..|.+.+++.+.+.|
T Consensus        26 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~   96 (1093)
T KOG1863|consen   26 NQSTTIDGIDDKSLL----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKN   96 (1093)
T ss_pred             cccccccCcCcchhh----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhcccc
Confidence            344446665555543    3678999999999999999999874    5679999999988765 559999999999999


Q ss_pred             CCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eeccC
Q 020276          100 QKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKK  162 (328)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~~~  162 (328)
                      ..++.......   ..|.|.....+||+.+|+.++++.++..+|+.+|++.+++.|.+ .++..
T Consensus        97 ~~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen   97 TIDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             CCCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            44444333333   67889988899999999999999999999999999999999999 55543

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.24  E-value=0.00022  Score=66.62  Aligned_cols=84  Identities=23%  Similarity=0.303  Sum_probs=70.1

Q ss_pred             ccCCCcEEEEEEcCcccccc----cCCCeEEcCcEEe--cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe
Q 020276           16 SHVPPAHFLLKIEAFSSLVE----NDVENYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE   88 (328)
Q Consensus        16 ~~~~~~~~~w~I~nfs~~~~----~~~~~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~   88 (328)
                      +....|...|+|.++...+.    .....++|++|..  .||..+.++|.+|++ .+.+.++|+|+.+..++.+ ...|+
T Consensus       275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wp  353 (391)
T KOG0297|consen  275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWP  353 (391)
T ss_pred             hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccC
Confidence            34558999999999955543    2456789999965  599999999999987 5668899999999998765 66799


Q ss_pred             EEEEEEEEEEeC
Q 020276           89 VYVIFRLFVLDQ  100 (328)
Q Consensus        89 ~~~~~~~~l~n~  100 (328)
                      +.-+++|.|++|
T Consensus       354 f~~~v~~~l~dq  365 (391)
T KOG0297|consen  354 FRQKVTLMLLDQ  365 (391)
T ss_pred             CCCceEEEEecc
Confidence            999999999999

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.11  E-value=0.00036  Score=65.21  Aligned_cols=79  Identities=19%  Similarity=0.296  Sum_probs=68.3

Q ss_pred             cCCceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEE
Q 020276          176 TSNYKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYV  245 (328)
Q Consensus       176 ~~~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~  245 (328)
                      ..++.+.|+|.+++..+       ...+.|+.|...  ||+.+..+|-+|++.+.+.++|+|+.++.+. +....|+++-
T Consensus       277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~  356 (391)
T KOG0297|consen  277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ  356 (391)
T ss_pred             ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence            45899999999996554       256788888754  9999999999999998899999999999884 4457899999


Q ss_pred             EEEEEEEcC
Q 020276          246 HFTLRIRNQ  254 (328)
Q Consensus       246 ~~~~~l~~~  254 (328)
                      +++|.+++|
T Consensus       357 ~v~~~l~dq  365 (391)
T KOG0297|consen  357 KVTLMLLDQ  365 (391)
T ss_pred             ceEEEEecc
Confidence            999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	2e-31
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	3e-27
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-26
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	3e-23
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	1e-20
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	4e-13
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	8e-19
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	5e-16
1d00_A	168	Tumor necrosis factor receptor associated protein	2e-18
1d00_A	168	Tumor necrosis factor receptor associated protein	1e-15
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	4e-18
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-16
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	1e-17
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	2e-12
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	2e-17
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	2e-12
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-15
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	1e-14

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  114 bits (288), Expect = 2e-31
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 19  PPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMV 78
             A F   +E FS L E+      S         WK++V P    +   +  +  +L   
Sbjct: 17  SEATFQFTVERFSRLSES----VLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCN 72

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFIN 138
              S    W  +    L +++ + DE    +        F   + +WGF  F+   E  +
Sbjct: 73  A-ESDSTSWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHKENDWGFSNFMAWSEVTD 128

Query: 139 ASNGYLVGDTCVFGAEVFVKETKKCTG 165
              G++  D   F   V         G
Sbjct: 129 PEKGFIDDDKVTFEVFVQA---DAPHG 152

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  103 bits (258), Expect = 3e-27
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 180 KYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVAS-GSHISMYLELTDSSTIT 238
            + + +E FS+L + +  S      +  WKI++ P+          +  +L+    S  T
Sbjct: 20  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDST 78

Query: 239 GGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELN 298
             S  +    L+I N    +    +                          G+S F+  +
Sbjct: 79  SWS-CHAQAVLKIINYRDDEKSFSRRISH-------------LFFHKENDWGFSNFMAWS 124

Query: 299 YLKKAGNGFLVNDVCIVEAEVPV 321
            +     GF+ +D    E  V  
Sbjct: 125 EVTDPEKGFIDDDKVTFEVFVQA 147

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score =  101 bits (252), Expect = 2e-26
 Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 12  SRSISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVK 68
           S     V    ++  I  FS   E   E  KS  F +G     KW L V P G  +E  K
Sbjct: 2   SGGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGL-DEESK 60

Query: 69  DHISVYLAMVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFD 128
           D++S+YL +V         EV   F+  +L+ K +E   ++    ++        +WGF 
Sbjct: 61  DYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKAMES---QRAYRFVQGKDWGFK 113

Query: 129 QFIPLEEFINASNGYLVGDTCVFGAEVFV 157
           +FI  +  ++ +NG L  D      EV V
Sbjct: 114 KFIRRDFLLDEANGLLPDDKLTLFCEVSV 142

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 92.7 bits (230), Expect = 3e-23
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 174 TSTSNYKYVWKIENFSKL---PDKIYESEVFVAG---DQKWKILLFPKGLGVASGSHISM 227
                + Y+W I NFS       ++ +S  F +G     KW + + PKGL   S  ++S+
Sbjct: 6   GKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65

Query: 228 YLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIA 287
           YL L         S++   F   I N    +    +++  Y  V    +           
Sbjct: 66  YLLLVSCP----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDW----------- 110

Query: 288 LGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVL 322
             G+ KFI  ++L    NG L +D   +  EV V+
Sbjct: 111 --GFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 143

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 86.1 bits (213), Expect = 1e-20
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 18/153 (11%)

Query: 22  HFLLKIEAFSSLVENDVENY----KSLEF--DAGGYKWKLVVYPNGNKNENVKDHISVYL 75
            ++ KI  F   ++   E       S  F     GYK  + ++      +   ++IS+++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 76  A-MVGTSSLGLGWEVYVIFRLFVLDQKKDE--------FLILQDAMGKQRRFHGLKLE-W 125
             M G     L W      RL +LDQ +               + +  QR       + +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 126 GFDQFIPLEEFINASNGYLVGDTCVFGAEVFVK 158
           G+  F+ LE        ++  DT +   EV  +
Sbjct: 126 GYVTFMHLEAL--RQRTFIKDDTLLVRCEVSTR 156

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 14/157 (8%)

Query: 176 TSNYKYVWKIENFSKL-------PDKIYESEVFVAGDQ--KWKILLFPKGLGVA-SGSHI 225
             N  Y+WKI NF             +  S  F  G    K  + L  +        ++I
Sbjct: 2   QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYI 61

Query: 226 SMYLELTDSST-ITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNT 284
           S+++                    L I +Q  +   +   +    K  ++ F     +  
Sbjct: 62  SLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPT-IPR 120

Query: 285 SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPV 321
           +    G+  F+ L  L++    F+ +D  +V  EV  
Sbjct: 121 NPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVST 155

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 82.0 bits (202), Expect = 8e-19
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 22  HFLLKIEAFSSLVENDVEN----YKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYL 75
            F+ KI  F+   +  V        S  F     GYK  L +Y NG+       H+S++ 
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTGRGTHLSLFF 102

Query: 76  A-MVGTSSLGLGWEVYVIFRLFVLDQK-----KDEFLILQDAMGKQRRFHGLKLEWGFDQ 129
             M G +   L W       L +LDQ       D F     +   QR  + + +  G   
Sbjct: 103 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 162

Query: 130 FIPLEEFINASNGYLVGDTCVFGAEV 155
           F P+ + + A N Y+  D     A V
Sbjct: 163 FCPVSK-MEAKNSYVRDDAIFIKAIV 187

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 74.3 bits (182), Expect = 5e-16
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 174 TSTSNYKYVWKIENFSKL-------PDKIYESEVFVAGDQ--KWKILLFPKGLGVASGSH 224
            ST +  ++WKI +F++              S  F       K  + ++  G G   G+H
Sbjct: 38  ASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTH 97

Query: 225 ISMYLELTDSST-ITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN 283
           +S++  +                 TL + +Q   +H     +      S         +N
Sbjct: 98  LSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSF-----QRPVN 152

Query: 284 TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI 324
                 G   F  ++ + +A N ++ +D   ++A V + G+
Sbjct: 153 DMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 192

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 80.4 bits (198), Expect = 2e-18
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 22  HFLLKIEAFSSLVENDVEN----YKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYL 75
            F+ KI  F+   +  V        S  F     GYK  L +Y NG+       H+S++ 
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTGRGTHLSLFF 78

Query: 76  A-MVGTSSLGLGWEVYVIFRLFVLDQK-----KDEFLILQDAMGKQRRFHGLKLEWGFDQ 129
             M G +   L W       L +LDQ       D F     +   QR  + + +  G   
Sbjct: 79  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 138

Query: 130 FIPLEEFINASNGYLVGDTCVFGAEV 155
           F P+ + + A N Y+  D     A V
Sbjct: 139 FCPVSK-MEAKNSYVRDDAIFIKAIV 163

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 174 TSTSNYKYVWKIENFSKL-------PDKIYESEVFVAGDQ--KWKILLFPKGLGVASGSH 224
            ST +  ++WKI +F++              S  F       K  + ++  G G   G+H
Sbjct: 14  ASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTH 73

Query: 225 ISMYLELTDSST-ITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN 283
           +S++  +                 TL + +Q   +H     +      S         +N
Sbjct: 74  LSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSF-----QRPVN 128

Query: 284 TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI 324
                 G   F  ++ + +A N ++ +D   ++A V + G+
Sbjct: 129 DMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 83.9 bits (207), Expect = 4e-18
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 20/145 (13%)

Query: 180 KYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVASG-SHISMYLELTDSSTIT 238
            + + +E FS+L + +  S      +  WKI++ P+          +  +L+  ++ + +
Sbjct: 32  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQ-CNAESDS 89

Query: 239 GGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGE--WLNTSIALGGWSKFIE 296
                +    L+I N    +    +            F   E  W        G+S F+ 
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHL-------FFHKENDW--------GFSNFMA 134

Query: 297 LNYLKKAGNGFLVNDVCIVEAEVPV 321
            + +     GF+ +D    E  V  
Sbjct: 135 WSEVTDPEKGFIDDDKVTFEVFVQA 159

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 78.9 bits (194), Expect = 2e-16
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 19  PPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMV 78
             A F   +E FS L E+      S         WK++V P    +   +  +  +L   
Sbjct: 29  SEATFQFTVERFSRLSES----VLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFL-QC 83

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFIN 138
              S    W  +    L +++ + DE    +        F   + +WGF  F+   E  +
Sbjct: 84  NAESDSTSWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHKENDWGFSNFMAWSEVTD 140

Query: 139 ASNGYLVGDTCVFGAEVFVKETK 161
              G++  D   F   V      
Sbjct: 141 PEKGFIDDDKVTFEVFVQADAPH 163

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 78.5 bits (193), Expect = 1e-17
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 16/147 (10%)

Query: 22  HFLLKIEAFSSLVENDVEN----YKSLEF--DAGGYKWKLVVYPNGNKNENVKDHISVYL 75
             + KI  +    +  V        S  F     GYK    VY NG+       H+S++ 
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGD-GMGKGTHLSLFF 99

Query: 76  A-MVGTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGK------QRRFHGLKLEWGFD 128
             M G     L W       L ++DQ      +             ++    + +  G  
Sbjct: 100 VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 159

Query: 129 QFIPLEEFINASNGYLVGDTCVFGAEV 155
            F+        +  Y+  DT      V
Sbjct: 160 VFVAQTVL--ENGTYIKDDTIFIKVIV 184

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 64.3 bits (156), Expect = 2e-12
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 16/163 (9%)

Query: 174 TSTSNYKYVWKIENFSKLPDKIYE-------SEVFVAGDQ--KWKILLFPKGLGVASGSH 224
           T++ N   +WKI ++ +   +          S+ F  G    K    ++  G G+  G+H
Sbjct: 35  TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTH 94

Query: 225 ISMYLELTDSSTITGGS-KIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN 283
           +S++  +                 TL + +Q  S+ +   A       +   F       
Sbjct: 95  LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDA--FKPDPNSSSFKKPTGEM 152

Query: 284 TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISK 326
              +  G   F+    L+     ++ +D   ++  V    +  
Sbjct: 153 NIAS--GCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 79.0 bits (194), Expect = 2e-17
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 22  HFLLKIEAFSSLVENDVEN----YKSLEF--DAGGYKWKLVVYPNGNKNENVKDHISVYL 75
             + KI  +    +  V        S  F     GYK    VY NG+       H+S++ 
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGD-GMGKGTHLSLFF 135

Query: 76  A-MVGTSSLGLGWEVYVIFRLFVLDQK------KDEFLILQDAMGKQRRFHGLKLEWGFD 128
             M G     L W       L ++DQ        D F    ++   ++    + +  G  
Sbjct: 136 VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 195

Query: 129 QFIPLEEFINASNGYLVGDTCVFGAEV 155
            F+        +  Y+  DT      V
Sbjct: 196 VFVAQTVL--ENGTYIKDDTIFIKVIV 220

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 16/163 (9%)

Query: 174 TSTSNYKYVWKIENFSKLPDKIYE-------SEVFVAGDQ--KWKILLFPKGLGVASGSH 224
           T++ N   +WKI ++ +   +          S+ F  G    K    ++  G G+  G+H
Sbjct: 71  TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTH 130

Query: 225 ISMYLELTDSST-ITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN 283
           +S++  +                 TL + +Q  S+ +   A       +   F       
Sbjct: 131 LSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKP--DPNSSSFKKPTGEM 188

Query: 284 TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISK 326
              +  G   F+    L+     ++ +D   ++  V    +  
Sbjct: 189 NIAS--GCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 227

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 73.4 bits (180), Expect = 5e-15
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 22  HFLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVKDHISVYLAMV 78
            ++  I  FS   E   E  KS  F +G     KW L V P G   E+ KD++S+YL +V
Sbjct: 8   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLV 66

Query: 79  GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLK-LEWGFDQFIPLEEFI 137
                    EV   F+  +L+ K +E      AM  QR +  ++  +WGF +FI     +
Sbjct: 67  SCPK----SEVRAKFKFSILNAKGEE----TKAMESQRAYRFVQGKDWGFKKFIRRGFLL 118

Query: 138 NASNGYLVGDTCVFGAEVFV 157
           + +NG L  D      EV V
Sbjct: 119 DEANGLLPDDKLTLFCEVSV 138

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 25/155 (16%)

Query: 174 TSTSNYKYVWKIENFSKLPDKIYE---SEVFVAG---DQKWKILLFPKGLGVASGSHISM 227
           +    + Y+W I NFS   +++ E   S  F +G     KW + + PKGL   S  ++S+
Sbjct: 2   SKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 61

Query: 228 YLELTDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGE-WLNTSI 286
           YL L         S++   F   I N       + +            F  G+ W     
Sbjct: 62  YLLLVSCP----KSEVRAKFKFSILNA------KGEETKAMESQRAYRFVQGKDW----- 106

Query: 287 ALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPV 321
              G+ KFI   +L    NG L +D   +  EV V
Sbjct: 107 ---GFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.97
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.96
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.96
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.95
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.95
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.94
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.94
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.94
1d00_A	168	Tumor necrosis factor receptor associated protein	99.93
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.93
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.93
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.93
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.93
1d00_A	168	Tumor necrosis factor receptor associated protein	99.93
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.93
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.92
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.92
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.92
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.91
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.9
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.9
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.51
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.43

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.97  E-value=1.5e-30  Score=211.44  Aligned_cols=135  Identities=16%  Similarity=0.239  Sum_probs=114.7

Q ss_pred             CceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCC
Q 020276          178 NYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGV-ASGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQLV  256 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~-~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~~  256 (328)
                      .++|+|+|+|||.++ +.++|++|.+||++|+|++||+|++. +.++|||+||+|... ..+..|++.|+|+|+|+||++
T Consensus        18 ~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~~~   95 (155)
T 2foj_A           18 EATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRD   95 (155)
T ss_dssp             EEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCSSC
T ss_pred             CcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcCCC
Confidence            789999999999996 67899999999999999999999865 356899999999644 345679999999999999988


Q ss_pred             Cc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeecCC
Q 020276          257 SK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKAL  328 (328)
Q Consensus       257 ~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~~~  328 (328)
                      +. +..+...              ++|.....+|||++||++++|+++.+|||+||+|+|+|+|+|.+++|+|
T Consensus        96 ~~~~~~~~~~--------------~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           96 DEKSFSRRIS--------------HLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             GGGCEEEEEE--------------EEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CcceEEeccE--------------EEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            65 3333333              7887667899999999999999777899999999999999999999986

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.96  E-value=1.2e-29  Score=203.84  Aligned_cols=137  Identities=31%  Similarity=0.467  Sum_probs=117.4

Q ss_pred             eeccCCCcEEEEEEcCcccccccCCCeEEcCcEEecCc---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEE
Q 020276           14 SISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVY   90 (328)
Q Consensus        14 ~~~~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~---~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~   90 (328)
                      ...++..++|+|+|+|||.+++..++.++|++|.+|||   +|+|.+||+|+. .++.+||||||+|.+.    .+|++.
T Consensus         4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~v~   78 (145)
T 3ivv_A            4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSEVR   78 (145)
T ss_dssp             -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSEEE
T ss_pred             CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCcEE
Confidence            45677889999999999998754567899999999996   999999999987 4567999999999876    359999


Q ss_pred             EEEEEEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-e
Q 020276           91 VIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-K  158 (328)
Q Consensus        91 ~~~~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~  158 (328)
                      |+|+|+|+||++++.......  ..+.|.. ..+|||.+||++++|++++++||+||+|+|+|+|+| +
T Consensus        79 a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~  144 (145)
T 3ivv_A           79 AKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  144 (145)
T ss_dssp             EEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred             EEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence            999999999998776543332  5678875 588999999999999877899999999999999998 5

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=3.7e-29  Score=203.24  Aligned_cols=135  Identities=21%  Similarity=0.343  Sum_probs=112.7

Q ss_pred             CCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276           18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLFV   97 (328)
Q Consensus        18 ~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~l   97 (328)
                      ...++|+|+|+|||.+.    +.++|++|.+||++|+|.+||+|+...+..+||||||+|... ..+.+|++.|+|+|+|
T Consensus        16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l   90 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI   90 (155)
T ss_dssp             CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred             CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence            45799999999999993    689999999999999999999997621357899999999654 3466799999999999


Q ss_pred             EeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eec
Q 020276           98 LDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET  160 (328)
Q Consensus        98 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~  160 (328)
                      +||+++.....+.   ..+.|.....+|||.+||++++|++++++||+||+|+|+|+|+| ++.
T Consensus        91 ~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A           91 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             CCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             EcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            9998876433333   57788876688999999999999988899999999999999999 654

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.96  E-value=6.2e-29  Score=199.62  Aligned_cols=131  Identities=27%  Similarity=0.432  Sum_probs=110.8

Q ss_pred             CCceEEEEEcccccCC---CceeecCceEeCCe---eEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEE
Q 020276          177 SNYKYVWKIENFSKLP---DKIYESEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLR  250 (328)
Q Consensus       177 ~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~  250 (328)
                      .+++|+|+|+|||.++   ++.+.|++|.+||+   +|+|++||+|+..++++|||+||+|.+.    +.|+++|+|+|+
T Consensus         9 ~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l~   84 (145)
T 3ivv_A            9 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS   84 (145)
T ss_dssp             CEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEEE
T ss_pred             EEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEEE
Confidence            4789999999999987   36899999999995   9999999999877667899999999865    479999999999


Q ss_pred             EEcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEee
Q 020276          251 IRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI  324 (328)
Q Consensus       251 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~  324 (328)
                      |+||+++.+......            ..++|. ...+|||++||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus        85 llnq~~~~~~~~~~~------------~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           85 ILNAKGEETKAMESQ------------RAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EECTTSCEEEEEECS------------SCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEecCCCceeeeccc------------ceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999988764432211            127786 4688999999999999766689999999999999999863

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.95  E-value=1.7e-28  Score=203.46  Aligned_cols=140  Identities=16%  Similarity=0.236  Sum_probs=112.5

Q ss_pred             cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEE
Q 020276          176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYV  245 (328)
Q Consensus       176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~  245 (328)
                      +.+++|+|+|+|||.+++       ..+.|++|.+|  |++|+|++||+|++.+.++|||+||+|.+++ +....|++.+
T Consensus        21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a  100 (178)
T 4gjh_A           21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ  100 (178)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred             ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence            458999999999998863       27999999999  9999999999998876678999999998764 2235799999


Q ss_pred             EEEEEEEcCCCCce-eeeeeeeeceeeeeeeeccceeccC----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          246 HFTLRIRNQLVSKH-YEKKAKCKYLKVSIVVFATGEWLNT----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       246 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      +|+|.|+||.++.. ......     ..    ...+.|..    .+.+|||++||++++|+++.+|||+||+|+|+|+|+
T Consensus       101 ~~~l~Lldq~~~~~~~~~~~~-----~~----~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~  171 (178)
T 4gjh_A          101 RVTLMLLDQSGKKNHIVETFK-----AD----PNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVD  171 (178)
T ss_dssp             EEEEEECCTTSSCCCEEEEEE-----CC----TTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEEC
T ss_pred             EEEEEEEcCCCCcceeEEeec-----cC----CccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEE
Confidence            99999999987642 221100     00    01266753    356899999999999998888999999999999998


Q ss_pred             EEee
Q 020276          321 VLGI  324 (328)
Q Consensus       321 i~~~  324 (328)
                      |.+.
T Consensus       172 i~~~  175 (178)
T 4gjh_A          172 LTDL  175 (178)
T ss_dssp             CTTC
T ss_pred             ecCC
Confidence            7653

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.95  E-value=4.2e-28  Score=201.17  Aligned_cols=142  Identities=20%  Similarity=0.293  Sum_probs=115.0

Q ss_pred             eccCCCcEEEEEEcCccccccc--CC--CeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCC
Q 020276           15 ISHVPPAHFLLKIEAFSSLVEN--DV--ENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGW   87 (328)
Q Consensus        15 ~~~~~~~~~~w~I~nfs~~~~~--~~--~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w   87 (328)
                      ...+..|.|+|+|+|||.+++.  .+  ..++|++|.+|  ||+|+|.+||+|+. .+..+||||||+|.+++.+ ..+|
T Consensus        18 ~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W   96 (178)
T 4gjh_A           18 EGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQW   96 (178)
T ss_dssp             HHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCS
T ss_pred             cCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCC
Confidence            3567889999999999998751  23  38999999999  99999999999987 4557999999999876532 4579


Q ss_pred             eEEEEEEEEEEeCCCCceeEeec--ccCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           88 EVYVIFRLFVLDQKKDEFLILQD--AMGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        88 ~~~~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      ++.|+|+|+|+||.++.......  .....+.|..    ...+|||.+||++++|++++++||+||+|+|+|+|.|
T Consensus        97 ~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i  172 (178)
T 4gjh_A           97 PFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL  172 (178)
T ss_dssp             SCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred             ceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence            99999999999998765433211  0002456763    2468999999999999977799999999999999988

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.94  E-value=2.2e-27  Score=199.40  Aligned_cols=142  Identities=18%  Similarity=0.231  Sum_probs=113.4

Q ss_pred             ccCCCcEEEEEEcCcccccc----cCCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCe
Q 020276           16 SHVPPAHFLLKIEAFSSLVE----NDVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWE   88 (328)
Q Consensus        16 ~~~~~~~~~w~I~nfs~~~~----~~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~   88 (328)
                      ..+..|.|+|+|+|||.+++    ..++.++|++|.+|  ||+|+|.+||+|+. .+.++||||||.+++++.+ ..+|+
T Consensus        35 ~~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp  113 (198)
T 4ghu_A           35 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP  113 (198)
T ss_dssp             TCCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSS
T ss_pred             ccccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCce
Confidence            35678999999999999875    13578999999999  99999999999987 4567899999999987543 45799


Q ss_pred             EEEEEEEEEEeCCCCceeEeecc--cCceeee----cCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eec
Q 020276           89 VYVIFRLFVLDQKKDEFLILQDA--MGKQRRF----HGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET  160 (328)
Q Consensus        89 ~~~~~~~~l~n~~~~~~~~~~~~--~~~~~~F----~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~  160 (328)
                      +.|+|+|+|+||.+++.......  ......|    ...+.+|||.+||++++|+  ++|||+||+|+|+|+|.| ..+
T Consensus       114 ~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          114 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred             EEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence            99999999999987644332110  0011123    3345689999999999999  589999999999999998 554

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.94  E-value=2e-26  Score=188.00  Aligned_cols=140  Identities=20%  Similarity=0.250  Sum_probs=107.9

Q ss_pred             CCCcEEEEEEcCcccccc--cCCC--eEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEE
Q 020276           18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVY   90 (328)
Q Consensus        18 ~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~   90 (328)
                      ...|.|+|+|+|||.+++  ..++  .++|++|.+|  ||+|+|++||+|++.+.+.+||||||++++++.+ ..+|++.
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            467999999999999875  2455  8999999999  9999999999997632247899999999877543 4579999


Q ss_pred             EEEEEEEEeCCCCce--eEeec--ccCceeeecCC-----CCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-ee
Q 020276           91 VIFRLFVLDQKKDEF--LILQD--AMGKQRRFHGL-----KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KE  159 (328)
Q Consensus        91 ~~~~~~l~n~~~~~~--~~~~~--~~~~~~~F~~~-----~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~  159 (328)
                      |+|+|+|+||.+...  .....  .......|...     ..+|||.+||++++|+  +++||+||+|+|+|+|.| .+
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence            999999999986521  11000  00012235431     2379999999999999  689999999999999998 54

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.94  E-value=2.4e-27  Score=199.12  Aligned_cols=137  Identities=18%  Similarity=0.265  Sum_probs=109.5

Q ss_pred             CCceEEEEEcccccCCCc-------eeecCceEe--CCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 020276          177 SNYKYVWKIENFSKLPDK-------IYESEVFVA--GDQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYVH  246 (328)
Q Consensus       177 ~~~~~~w~I~nfs~~~~~-------~~~S~~f~~--~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~~  246 (328)
                      ..++|+|+|.|||.+++.       .++|++|.+  ||++|+|++||+|++.+.++|||+||++.++...+ ..|++.++
T Consensus        41 ~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a~  120 (192)
T 1ca9_A           41 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK  120 (192)
T ss_dssp             SSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             cCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEEE
Confidence            489999999999998732       489999999  99999999999998766678999999998775433 68999999


Q ss_pred             EEEEEEcCCCCceeeeeeeeeceeeeeeeeccceecc----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEE
Q 020276          247 FTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLN----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVL  322 (328)
Q Consensus       247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~  322 (328)
                      |+|.|+||+++++......       +.  ...+.|.    ..+.+|||++||++++|++ .+|||+||+|+|+|+|+|.
T Consensus       121 ~~l~lldq~~~~~~~~~~~-------~~--~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~  190 (192)
T 1ca9_A          121 VTLMLLDQNNREHVIDAFR-------PD--VTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT  190 (192)
T ss_dssp             EEEEECCTTSSCCEEEEEC-------CC--TTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCT
T ss_pred             EEEEEECCCCCceeeEeec-------cC--CchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEec
Confidence            9999999988754332211       00  0113453    2356899999999999994 3799999999999999885


Q ss_pred             e
Q 020276          323 G  323 (328)
Q Consensus       323 ~  323 (328)
                      +
T Consensus       191 ~  191 (192)
T 1ca9_A          191 G  191 (192)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.93  E-value=4.2e-27  Score=193.69  Aligned_cols=136  Identities=17%  Similarity=0.253  Sum_probs=108.3

Q ss_pred             CCceEEEEEcccccCCC-----c--eeecCceE--eCCeeEEEEEecCCCCCCCCCeEEEEEEecCCCCCC-CCCeEEEE
Q 020276          177 SNYKYVWKIENFSKLPD-----K--IYESEVFV--AGDQKWKILLFPKGLGVASGSHISMYLELTDSSTIT-GGSKIYVH  246 (328)
Q Consensus       177 ~~~~~~w~I~nfs~~~~-----~--~~~S~~f~--~~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~-~~w~~~~~  246 (328)
                      .+++|+|+|+|||.+++     +  .+.|++|.  +||++|+|++||+|++.+.++|||+||+|.++...+ ..|++.++
T Consensus        17 ~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~~   96 (168)
T 1d00_A           17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK   96 (168)
T ss_dssp             SSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             cCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEEE
Confidence            48999999999999863     2  38999996  789999999999998766678999999998765433 68999999


Q ss_pred             EEEEEEcCCCCceeeeeeeeeceeeeeeeeccceeccC----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEE
Q 020276          247 FTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNT----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVL  322 (328)
Q Consensus       247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~  322 (328)
                      |+|.|+||+++.+......       +.  ...+.|..    .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.
T Consensus        97 ~~l~ll~q~~~~~~~~~~~-------~~--~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           97 VTLMLLDQNNREHVIDAFR-------PD--VTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             EEEEECCTTSSCCEEEEEC-------CC--TTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred             EEEEEECCCCCccceeccc-------cC--cchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence            9999999988654432210       00  00134642    4578999999999999984 499999999999999875

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.93  E-value=1.5e-26  Score=209.17  Aligned_cols=178  Identities=26%  Similarity=0.400  Sum_probs=129.7

Q ss_pred             cCCCcEEEEEEcCcccccccCCCeEEcCcEEecCc---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEE
Q 020276           17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIF   93 (328)
Q Consensus        17 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~---~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~   93 (328)
                      ++..|+|+|+|+|||.++...++.++||+|.+||+   +|+|.+||+|+. +++++|||+||+|.+++    +|++.|+|
T Consensus         3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~~   77 (312)
T 3hqi_A            3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF   77 (312)
T ss_dssp             EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEE
T ss_pred             ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEEE
Confidence            45578999999999999654578999999999995   999999999987 45689999999998654    49999999


Q ss_pred             EEEEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eeccC-CCceeeeec
Q 020276           94 RLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KETKK-CTGECLSMK  171 (328)
Q Consensus        94 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~~~-~~~~~~~~~  171 (328)
                      +|+|+|++++........  ..+.|... .+|||.+||++++|+++++|||+||+|+|+|+|.| ++... ...+....+
T Consensus        78 ~~~l~~~~~~~~~~~~~~--~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~  154 (312)
T 3hqi_A           78 KFSILNAKGEETKAMESQ--RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMV  154 (312)
T ss_dssp             EEEEECTTSCEEEEEECS--SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSC
T ss_pred             EEEEEeCCCCcccccccC--CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecccccccccccccc
Confidence            999999998776554432  56788864 68999999999999887889999999999999999 65421 121111122


Q ss_pred             c-ccccCCceEEEEEcccccCC-CceeecCceEeCCeeEE
Q 020276          172 K-LTSTSNYKYVWKIENFSKLP-DKIYESEVFVAGDQKWK  209 (328)
Q Consensus       172 ~-p~s~~~~~~~w~I~nfs~~~-~~~~~S~~f~~~g~~W~  209 (328)
                      + |++  +     ...++..+. .....+..+.++|.++.
T Consensus       155 ~~p~~--~-----l~~~l~~l~~~~~~~Dv~l~v~~~~f~  187 (312)
T 3hqi_A          155 KVPEC--R-----LADELGGLWENSRFTDCCLCVAGQEFQ  187 (312)
T ss_dssp             CCCCC--C-----HHHHHHHHHHTTCSCCEEEEETTEEEE
T ss_pred             CCCCc--h-----HHHHHHHHHhCCCCCceEEEECCEEEe
Confidence            2 332  1     123344433 23344557778886643

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.93  E-value=4.5e-27  Score=197.54  Aligned_cols=142  Identities=17%  Similarity=0.223  Sum_probs=110.7

Q ss_pred             cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEE
Q 020276          176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSST-ITGGSKIYV  245 (328)
Q Consensus       176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~-~~~~w~~~~  245 (328)
                      +.+++|+|+|+|||.+++       +.+.|++|.+|  |++|+|++||+|++.+.++|||+||++.+++. ....|++.+
T Consensus        37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a  116 (198)
T 4ghu_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (198)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence            458999999999998763       57999999999  99999999999988766789999999987642 245899999


Q ss_pred             EEEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEee
Q 020276          246 HFTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI  324 (328)
Q Consensus       246 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~  324 (328)
                      +|+|.|+||.++. +......     ..+......+.|...+.+|||++||++++|++  +|||+||+|+|+|+|+|+..
T Consensus       117 ~~~l~Lldq~~~~~~~~~~~~-----~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~  189 (198)
T 4ghu_A          117 KVTLMLMDQGSSRRHLGDAFK-----PDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL  189 (198)
T ss_dssp             CEEEEECCCSTTCCCEEEEEC-----CCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEcCCCCccceEEEee-----cCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccC
Confidence            9999999998653 2222110     00000000122334567899999999999997  79999999999999998764

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.93  E-value=9.8e-27  Score=195.09  Aligned_cols=137  Identities=19%  Similarity=0.228  Sum_probs=110.9

Q ss_pred             CCCcEEEEEEcCcccccc--cCCC--eEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEE
Q 020276           18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVY   90 (328)
Q Consensus        18 ~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~   90 (328)
                      ...|+|+|+|+|||.+++  ..++  .++|++|.+|  ||+|+|++||+|++ .+.++|||+||++++++.+ ..+|++.
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~  115 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK  115 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence            478999999999999874  2344  5999999999  99999999999987 4567999999999877654 4579999


Q ss_pred             EEEEEEEEeCCCCceeEeec--ccCceeeecCC----CCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           91 VIFRLFVLDQKKDEFLILQD--AMGKQRRFHGL----KLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        91 ~~~~~~l~n~~~~~~~~~~~--~~~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      |+|+|+|+||.+.+......  .....+.|..+    +.+|||.+||++++|+  ++|||+||+|+|+|+|.|
T Consensus       116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v  186 (192)
T 2gkw_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  186 (192)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECC
T ss_pred             EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEc
Confidence            99999999998875433211  00022557542    3679999999999999  469999999999999987

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.93  E-value=2e-26  Score=193.57  Aligned_cols=138  Identities=23%  Similarity=0.316  Sum_probs=110.7

Q ss_pred             CCCcEEEEEEcCcccccc--cCCC--eEEcCcEEe--cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCCeEE
Q 020276           18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LGWEVY   90 (328)
Q Consensus        18 ~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~   90 (328)
                      ...|.|+|+|+|||.+++  ..++  .++||+|.+  |||+|+|.+||+|+. .+..+||||||++.+++.++ .+|++.
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~  118 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN  118 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence            678999999999999875  2344  599999999  999999999999987 44579999999998876544 689999


Q ss_pred             EEEEEEEEeCCCCceeEeecc-cCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           91 VIFRLFVLDQKKDEFLILQDA-MGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        91 ~~~~~~l~n~~~~~~~~~~~~-~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      |+|+|+|+||++++....... ......|..    ...+|||.+||++++|++ +++||+||+|+|+|+|.|
T Consensus       119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V  189 (192)
T 1ca9_A          119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL  189 (192)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred             EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence            999999999988743221100 001234642    246899999999999986 579999999999999987

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.93  E-value=1.5e-26  Score=190.44  Aligned_cols=139  Identities=23%  Similarity=0.312  Sum_probs=109.7

Q ss_pred             cCCCcEEEEEEcCcccccc--cCCC--eEEcCcEE--ecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCCeE
Q 020276           17 HVPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFD--AGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLG-LGWEV   89 (328)
Q Consensus        17 ~~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~f~--~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~   89 (328)
                      ....|+|+|+|+|||.+++  ..++  .++||+|.  +|||+|+|.+||+|+. .+.++||||||++.+++.++ .+|++
T Consensus        15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~   93 (168)
T 1d00_A           15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF   93 (168)
T ss_dssp             CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred             cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCce
Confidence            4578999999999999875  2344  39999996  7899999999999987 44579999999998876543 68999


Q ss_pred             EEEEEEEEEeCCCCceeEeec-ccCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           90 YVIFRLFVLDQKKDEFLILQD-AMGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        90 ~~~~~~~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      .|+|+|+|+||++.+...... .....+.|..    .+.+|||.+||++++|+++ +|||+||+|+|+|+|.|
T Consensus        94 ~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v  165 (168)
T 1d00_A           94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL  165 (168)
T ss_dssp             CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred             EEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence            999999999998865322110 0001235653    3467999999999999953 39999999999999987

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.93  E-value=2.3e-26  Score=187.59  Aligned_cols=140  Identities=19%  Similarity=0.188  Sum_probs=104.6

Q ss_pred             CCceEEEEEcccccCCC-----c--eeecCceEeC--CeeEEEEEecCCCCCC-CCCeEEEEEEecCCCC-CCCCCeEEE
Q 020276          177 SNYKYVWKIENFSKLPD-----K--IYESEVFVAG--DQKWKILLFPKGLGVA-SGSHISMYLELTDSST-ITGGSKIYV  245 (328)
Q Consensus       177 ~~~~~~w~I~nfs~~~~-----~--~~~S~~f~~~--g~~W~i~~yp~G~~~~-~~~~lsvyL~~~~~~~-~~~~w~~~~  245 (328)
                      .+++|+|+|+|||.+++     +  .+.|++|.+|  |++|+|++||+|++.+ +++|||+||++++++. ....|++++
T Consensus         3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a   82 (160)
T 1lb6_A            3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (160)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence            37899999999998863     2  7999999999  9999999999998754 3789999999987643 245799999


Q ss_pred             EEEEEEEcCCCCceeeeeeeeeceeeeeeeeccceeccC-----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          246 HFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNT-----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      +|+|.|+||.++... +... ......+    ....|..     ...+|||++||++++|++  +|||+||+|+|+|+|+
T Consensus        83 ~~~l~lldq~~~~~~-~~~~-~~~~~~~----~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~  154 (160)
T 1lb6_A           83 TIRLTILDQSEAPVR-QNHE-EIMDAKP----ELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (160)
T ss_dssp             EEEEEECCCSCTTSC-CCEE-EEEECCT----TSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             eEEEEEEcCCCcccc-ccce-EEeecCC----cchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEE
Confidence            999999999865311 1100 0000000    1123432     123799999999999996  7999999999999999


Q ss_pred             EEee
Q 020276          321 VLGI  324 (328)
Q Consensus       321 i~~~  324 (328)
                      |+.+
T Consensus       155 v~~~  158 (160)
T 1lb6_A          155 TRFD  158 (160)
T ss_dssp             C---
T ss_pred             Eeec
Confidence            9864

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.92  E-value=3.6e-26  Score=191.61  Aligned_cols=137  Identities=18%  Similarity=0.281  Sum_probs=109.2

Q ss_pred             CCceEEEEEcccccCCC-----c--eeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEEE
Q 020276          177 SNYKYVWKIENFSKLPD-----K--IYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSST-ITGGSKIYVH  246 (328)
Q Consensus       177 ~~~~~~w~I~nfs~~~~-----~--~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~-~~~~w~~~~~  246 (328)
                      ..++|+|+|.|||.++.     +  .+.|++|.+|  |++|+|++||+|++.++++|||+||++.+++. ....|++.++
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~  117 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  117 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence            48999999999999862     2  5899999999  99999999999987767789999999987643 2458999999


Q ss_pred             EEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceeccC----CcCCCCcccceeccccccCCCCeEECCEEEEEEEEEE
Q 020276          247 FTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLNT----SIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPV  321 (328)
Q Consensus       247 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i  321 (328)
                      |+|.|+||.++. +......     ..    ...+.|..    .+.+|||++||++++|++  +|||+||+|+|+|+|+|
T Consensus       118 ~~l~lldq~~~~~~~~~~~~-----~~----~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v  186 (192)
T 2gkw_A          118 VTLMLMDQGSSRRHLGDAFK-----PD----PNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  186 (192)
T ss_dssp             EEEEECCCSTTCCCEEEEEC-----CC----TTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred             EEEEEECCCCCccceEEEEe-----cC----CCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence            999999998764 2221110     00    01245643    246899999999999998  59999999999999987


Q ss_pred             Eee
Q 020276          322 LGI  324 (328)
Q Consensus       322 ~~~  324 (328)
                      .+.
T Consensus       187 ~~~  189 (192)
T 2gkw_A          187 SDL  189 (192)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            543

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.92  E-value=1.4e-25  Score=192.83  Aligned_cols=138  Identities=19%  Similarity=0.226  Sum_probs=111.2

Q ss_pred             cCCCcEEEEEEcCcccccc-c-CC--CeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeE
Q 020276           17 HVPPAHFLLKIEAFSSLVE-N-DV--ENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEV   89 (328)
Q Consensus        17 ~~~~~~~~w~I~nfs~~~~-~-~~--~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~   89 (328)
                      ....|+|+|+|+|||.+++ . .+  ..++|++|.+|  ||+|+|++||+|++ .+.++|||+||++++++.+ ..+|++
T Consensus        72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~  150 (228)
T 1flk_A           72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  150 (228)
T ss_dssp             CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSC
T ss_pred             cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcE
Confidence            3578999999999999875 2 23  37999999999  99999999999987 4568999999999877654 457999


Q ss_pred             EEEEEEEEEeCCCCceeEeecc--cCceeeecC----CCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           90 YVIFRLFVLDQKKDEFLILQDA--MGKQRRFHG----LKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        90 ~~~~~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      .|+|+|+|+||.+.+.+.....  ....+.|..    .+.+|||.+||++++|+  ++|||+||+|+|+|+|.|
T Consensus       151 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v  222 (228)
T 1flk_A          151 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  222 (228)
T ss_dssp             CCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCC
T ss_pred             EEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEc
Confidence            9999999999988764332110  002345652    24679999999999999  589999999999999988

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.92  E-value=8e-26  Score=194.43  Aligned_cols=139  Identities=17%  Similarity=0.261  Sum_probs=110.9

Q ss_pred             cCCceEEEEEcccccCCC-------ceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCCC-CCCCCeEEE
Q 020276          176 TSNYKYVWKIENFSKLPD-------KIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSST-ITGGSKIYV  245 (328)
Q Consensus       176 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~-~~~~w~~~~  245 (328)
                      +..++|+|+|.|||.+++       ..+.|++|.+|  |++|+|++||+|++.+.++|||+||++.+++. ....|++.+
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a  152 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  152 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence            358999999999998863       27899999999  99999999999987767789999999987643 345899999


Q ss_pred             EEEEEEEcCCCCc-eeeeeeeeeceeeeeeeeccceecc----CCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          246 HFTLRIRNQLVSK-HYEKKAKCKYLKVSIVVFATGEWLN----TSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       246 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      +|+|.|+||.++. +......     ..+    ..+.|.    ..+.+|||++||++++|++  +|||+||+|+|+|+|+
T Consensus       153 ~~~l~lldq~~~~~~~~~~~~-----~~~----~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~  221 (228)
T 1flk_A          153 KVTLMLMDQGSSRRHLGDAFK-----PDP----NSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD  221 (228)
T ss_dssp             CEEEEECCCSSSCCCEEEEEC-----CCT----TCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECC
T ss_pred             EEEEEEEcCCCCccceeeeec-----CCC----ccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEE
Confidence            9999999998765 2222110     000    113464    2356899999999999997  7999999999999999


Q ss_pred             EEeee
Q 020276          321 VLGIS  325 (328)
Q Consensus       321 i~~~~  325 (328)
                      |.+..
T Consensus       222 v~~~~  226 (228)
T 1flk_A          222 TSDLP  226 (228)
T ss_dssp             CTTSC
T ss_pred             ccccc
Confidence            87644

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.91  E-value=1.5e-24  Score=196.05  Aligned_cols=130  Identities=28%  Similarity=0.434  Sum_probs=106.7

Q ss_pred             CceEEEEEcccccCC---CceeecCceEeCCe---eEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276          178 NYKYVWKIENFSKLP---DKIYESEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRI  251 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l  251 (328)
                      .++|+|+|+|||.++   ++.+.|++|.+||+   +|+|++||+|++.++++|+|+||+|.+.    ..|++.|+|+|+|
T Consensus         6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l   81 (312)
T 3hqi_A            6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI   81 (312)
T ss_dssp             EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEE
T ss_pred             EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEE
Confidence            689999999999996   57899999999985   9999999999877677899999999864    3689999999999


Q ss_pred             EcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEee
Q 020276          252 RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI  324 (328)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~  324 (328)
                      +||+++........            ..+.|. ++.+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus        82 ~~~~~~~~~~~~~~------------~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           82 LNAKGEETKAMESQ------------RAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             ECTTSCEEEEEECS------------SCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             EeCCCCcccccccC------------CceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            99988764432211            127786 4568999999999999877789999999999999999953

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.90  E-value=6.1e-24  Score=204.91  Aligned_cols=136  Identities=21%  Similarity=0.338  Sum_probs=112.2

Q ss_pred             cCCCcEEEEEEcCcccccccCCCeEEcCcEEecCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEE
Q 020276           17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRLF   96 (328)
Q Consensus        17 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~~   96 (328)
                      ....++|+|+|+|||.++    +.++|++|.+||++|+|.+||+|+..+...+||||||.|.+. ..+.+|.+.|+|+|.
T Consensus        27 ~~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~  101 (522)
T 2f1z_A           27 WRSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLK  101 (522)
T ss_dssp             CCSEEEEEEEESSCTTCC----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEE
T ss_pred             ccCCcEEEEEECChhhcC----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEE
Confidence            355899999999999985    289999999999999999999997533357899999999876 356789999999999


Q ss_pred             EEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eec
Q 020276           97 VLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET  160 (328)
Q Consensus        97 l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~  160 (328)
                      |+|+.++..+..+.   ..+.|.....+|||.+||++++|.++++|||+||+++|+|+|+| .+.
T Consensus       102 l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A          102 IINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             ECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             EEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            99998776554444   56788776688999999999999887899999999999999999 554

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=202.95  Aligned_cols=135  Identities=16%  Similarity=0.251  Sum_probs=111.0

Q ss_pred             CCceEEEEEcccccCCCceeecCceEeCCeeEEEEEecCCCCCC-CCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 020276          177 SNYKYVWKIENFSKLPDKIYESEVFVAGDQKWKILLFPKGLGVA-SGSHISMYLELTDSSTITGGSKIYVHFTLRIRNQL  255 (328)
Q Consensus       177 ~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~i~~yp~G~~~~-~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l~~~~  255 (328)
                      ..++|+|+|+|||.+++ .+.|++|.+||++|+|++||+|+..+ .++|||+||+|.+. ..+.+|.+.|+|+|.|+||.
T Consensus        29 ~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~~  106 (522)
T 2f1z_A           29 SEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYR  106 (522)
T ss_dssp             SEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCTT
T ss_pred             CCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcCC
Confidence            37899999999999986 78999999999999999999997543 56899999999876 44678999999999999998


Q ss_pred             CCce-eeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeeecC
Q 020276          256 VSKH-YEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGISKA  327 (328)
Q Consensus       256 ~~~~-~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~~~  327 (328)
                      ++.. ..+...              ++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...+|.
T Consensus       107 ~~~~~~~~~~~--------------~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~  165 (522)
T 2f1z_A          107 DDEKSFSRRIS--------------HLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  165 (522)
T ss_dssp             CGGGCEEEECC--------------EEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred             CCccceeccce--------------eEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence            7653 233333              888766788999999999999776689999999999999999876653

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.51  E-value=5e-14  Score=135.07  Aligned_cols=131  Identities=19%  Similarity=0.300  Sum_probs=104.5

Q ss_pred             eccCCCcEEEEEEcCcccccccCCCeEEcCcEEe-cCceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeE-EE
Q 020276           15 ISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDA-GGYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEV-YV   91 (328)
Q Consensus        15 ~~~~~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~-gg~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~-~~   91 (328)
                      +.+..+..+.|+|.||+++....+..++||+|.. .||+++|.+||++      ..|+|||++|.+++.+ .+.||+ .-
T Consensus       400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~~  473 (592)
T 4gwm_A          400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPWQ  473 (592)
T ss_dssp             EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred             EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCCC
Confidence            4567788999999999999875567899999964 5999999999875      4689999999998764 678999 57


Q ss_pred             EEEEEEEeCCCCceeEeecccCceeeec---------------------------C-----CCCCCCccccccccccccC
Q 020276           92 IFRLFVLDQKKDEFLILQDAMGKQRRFH---------------------------G-----LKLEWGFDQFIPLEEFINA  139 (328)
Q Consensus        92 ~~~~~l~n~~~~~~~~~~~~~~~~~~F~---------------------------~-----~~~~~G~~~fi~~~~L~~~  139 (328)
                      +++|+|+||++....++.    ....|+                           .     .+.+|||+.||+++.|.  
T Consensus       474 q~t~~llDQ~pd~~~rms----~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--  547 (592)
T 4gwm_A          474 QATMTLLDQNPDIRQRMS----NQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--  547 (592)
T ss_dssp             EEEEEECCCCSSGGGCCC----EEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--
T ss_pred             EEEEEEeCCCCChHhcCc----eeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--
Confidence            899999999876554332    111221                           1     12358999999999999  


Q ss_pred             CCCeeeCCEEEEEEEEEE
Q 020276          140 SNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus       140 ~~~~l~dd~l~i~~~v~v  157 (328)
                      ++.||+||.|+|.++|.=
T Consensus       548 ~r~fiK~d~~~i~~~~eD  565 (592)
T 4gwm_A          548 SRDFIKGDDVYILLTVED  565 (592)
T ss_dssp             STTSSBTTBEEEEEEEEE
T ss_pred             hcCcccCCeEEEEEEEEe
Confidence            678999999999998844

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.43  E-value=3.1e-13  Score=129.67  Aligned_cols=135  Identities=16%  Similarity=0.165  Sum_probs=101.0

Q ss_pred             CceEEEEEcccccCC---CceeecCceEe-CCeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeE-EEEEEEEE
Q 020276          178 NYKYVWKIENFSKLP---DKIYESEVFVA-GDQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKI-YVHFTLRI  251 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~---~~~~~S~~f~~-~g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~-~~~~~~~l  251 (328)
                      ...+.|+|+||+++.   +..++||.|.. .||+++|.+||++     +.++|+|++|.+++ +..+.||+ .-+++|.|
T Consensus       405 CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~l  479 (592)
T 4gwm_A          405 CPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATMTL  479 (592)
T ss_dssp             CCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEE
T ss_pred             CCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEEEE
Confidence            567999999999987   36799999985 4999999999976     46999999999873 44589998 57899999


Q ss_pred             EcCCCCceeeeeeeeeceeeeeeee--------c------cceecc-----CCcCCCCcccceeccccccCCCCeEECCE
Q 020276          252 RNQLVSKHYEKKAKCKYLKVSIVVF--------A------TGEWLN-----TSIALGGWSKFIELNYLKKAGNGFLVNDV  312 (328)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~  312 (328)
                      ++|+......+..+ +.+++.|.-.        +      ....|.     .++.+|||+.||+++.|++  +.||+||+
T Consensus       480 lDQ~pd~~~rms~~-~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~d~  556 (592)
T 4gwm_A          480 LDQNPDIRQRMSNQ-RSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKGDD  556 (592)
T ss_dssp             CCCCSSGGGCCCEE-EEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBTTB
T ss_pred             eCCCCChHhcCcee-EEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccCCe
Confidence            99965443222222 4445443100        0      001121     2356899999999999997  58999999


Q ss_pred             EEEEEEEE
Q 020276          313 CIVEAEVP  320 (328)
Q Consensus       313 l~i~~~V~  320 (328)
                      |+|.+.|+
T Consensus       557 ~~i~~~~e  564 (592)
T 4gwm_A          557 VYILLTVE  564 (592)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-20
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	4e-18
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	2e-19
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	5e-18
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	1e-18
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	2e-16
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	9e-18
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	1e-17

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 1e-20
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 23  FLLKIEAFSSLVENDVENYKSLEFDAGG---YKWKLVVYPNGNKNENVKDHISVYLAMVG 79
           ++  I  FS   E   E  KS  F +G     KW L V P G   E+ KD++S+YL +V 
Sbjct: 7   YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLVS 65

Query: 80  TSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINA 139
                   EV   F+  +L+ K +E   ++     +        +WGF +FI  +  ++ 
Sbjct: 66  ----CPKSEVRAKFKFSILNAKGEETKAMESQ---RAYRFVQGKDWGFKKFIRRDFLLDE 118

Query: 140 SNGYLVGDTCVFGAEVFV-KETKKCTGE 166
           +NG L  D      EV V +++   +G+
Sbjct: 119 ANGLLPDDKLTLFCEVSVVQDSVNISGQ 146

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 4e-18
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 23/152 (15%)

Query: 178 NYKYVWKIENFSKLPDKI---YESEVFVAGDQ---KWKILLFPKGLGVASGSHISMYLEL 231
            + Y+W I NFS   +++    +S  F +G     KW + + PKGL   S  ++S+YL L
Sbjct: 4   KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL 63

Query: 232 TDSSTITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGW 291
                    S++   F   I N    +    +++  Y  V    +             G+
Sbjct: 64  VSCPK----SEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDW-------------GF 106

Query: 292 SKFIELNYLKKAGNGFLVNDVCIVEAEVPVLG 323
            KFI  ++L    NG L +D   +  EV V+ 
Sbjct: 107 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 2e-19
 Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 16/157 (10%)

Query: 178 NYKYVWKIENFSKL-------PDKIYESEVFVAGDQ--KWKILLFPKGLGVASGSHISMY 228
           +  ++WKI +F +              S  F       K  + ++  G G   G+H+S++
Sbjct: 2   DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLF 61

Query: 229 LELTDS-STITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIA 287
             +    +            TL + +Q   +H     +      S         +     
Sbjct: 62  FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIA---- 117

Query: 288 LGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGI 324
             G   F  ++ ++   N ++ +D   ++A V + G+
Sbjct: 118 -SGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTGL 152

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 5e-18
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 22  HFLLKIEAFSSLVENDVEN----YKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYL 75
            F+ KI  F    +  V        S  F     GYK  L +Y NG+       H+S++ 
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR-GTHLSLFF 62

Query: 76  AMV-GTSSLGLGWEVYVIFRLFVLDQKK-----DEFLILQDAMGKQRRFHGLKLEWGFDQ 129
            ++ G +   L W       L +LDQ       D F     +   QR  + + +  G   
Sbjct: 63  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 122

Query: 130 FIPLEEFINASNGYLVGDTCVFGAEV 155
           F P+ + + A N Y+  D     A V
Sbjct: 123 FCPVSK-MEAKNSYVRDDAIFIKAIV 147

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 1e-18
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 22  HFLLKIEAFSSLVENDVEN----YKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYL 75
            ++ KI  F   ++   E       S  F  G  GYK  + ++      +   ++IS+++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 76  AMV-GTSSLGLGWEVYVIFRLFVLDQKKDEFLILQDAM---------GKQRRFHGLKLEW 125
             + G     L W      RL +LDQ +       + +          ++         +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 126 GFDQFIPLEEFINASNGYLVGDTCVFGAEV 155
           G+  F+ LE        ++  DT +   EV
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEV 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 2e-16
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 14/153 (9%)

Query: 178 NYKYVWKIENFSKL-------PDKIYESEVFVAGDQ--KWKILLFPKGLGVA-SGSHISM 227
           N  Y+WKI NF             +  S  F  G    K  + L  +        ++IS+
Sbjct: 4   NGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISL 63

Query: 228 YLELTDSST-ITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSI 286
           ++                    L I +Q  +   +   +    K  ++ F     +  + 
Sbjct: 64  FVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAF-QRPTIPRNP 122

Query: 287 ALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEV 319
              G+  F+ L  L++    F+ +D  +V  EV
Sbjct: 123 KGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEV 153

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 9e-18
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 16/156 (10%)

Query: 180 KYVWKIENFSKL-------PDKIYESEVFVAGDQ--KWKILLFPKGLGVASGSHISMYLE 230
             +WKI ++ +              S+ F  G    K    ++  G G+  G+H+S++  
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 231 LTDSST-ITGGSKIYVHFTLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALG 289
           +                 TL + +Q  S+ +   A       S     TGE    S    
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIAS---- 119

Query: 290 GWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGIS 325
           G   F+    L+     ++ +D   ++  V    + 
Sbjct: 120 GCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 153

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 1e-17
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 16/147 (10%)

Query: 22  HFLLKIEAFSSLVEN----DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYL 75
             + KI  +    +        +  S  F  G  GYK    VY NG+       H+S++ 
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGK-GTHLSLFF 62

Query: 76  AMV-GTSSLGLGWEVYVIFRLFVLDQKKDEFLIL------QDAMGKQRRFHGLKLEWGFD 128
            ++ G     L W       L ++DQ      +        ++   ++    + +  G  
Sbjct: 63  VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 122

Query: 129 QFIPLEEFINASNGYLVGDTCVFGAEV 155
            F+        +  Y+  DT      V
Sbjct: 123 VFVAQTVL--ENGTYIKDDTIFIKVIV 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.95
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.94
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.94
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.93
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.93
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.93
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.93
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.91

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=192.73  Aligned_cols=134  Identities=30%  Similarity=0.446  Sum_probs=114.7

Q ss_pred             CCcEEEEEEcCcccccccCCCeEEcCcEEecCc---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEE
Q 020276           19 PPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVGTSSLGLGWEVYVIFRL   95 (328)
Q Consensus        19 ~~~~~~w~I~nfs~~~~~~~~~~~S~~f~~gg~---~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~~~~   95 (328)
                      ...+|+|+|+||+.+++..+++++||.|.+||+   +|+|.+||+|.. ++..+||||||.+.++.    .|++.++|+|
T Consensus         3 ~~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~-~~~~~~lSv~L~~~~~~----~~~v~~~~~~   77 (146)
T d2cr2a1           3 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFKF   77 (146)
T ss_dssp             EEEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSS-SSSSSBCCEEEECCCCS----SSEEEEECEE
T ss_pred             eEEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCC-CCCCCEEEEEEEeccCC----CceEEEEEEE
Confidence            457899999999988765678999999999874   899999999987 56788999999998764    4999999999


Q ss_pred             EEEeCCCCceeEeecccCceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE-eec
Q 020276           96 FVLDQKKDEFLILQDAMGKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV-KET  160 (328)
Q Consensus        96 ~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v-~~~  160 (328)
                      .|+|+.+++......   ..+.+.....+|||.+||++++|.++.+|||+||+|+|+|+|+| ++.
T Consensus        78 ~l~n~~~~~~~~~~~---~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          78 SILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             EEECTTSCEEEEEEC---SCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EEEcCCCCcccceEe---cceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            999998877766654   33334444688999999999999999999999999999999999 665

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-27  Score=190.09  Aligned_cols=136  Identities=24%  Similarity=0.341  Sum_probs=108.6

Q ss_pred             CcEEEEEEcCccccccc----CCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEE
Q 020276           20 PAHFLLKIEAFSSLVEN----DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVI   92 (328)
Q Consensus        20 ~~~~~w~I~nfs~~~~~----~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~   92 (328)
                      .|+|+|+|+|||.+++.    .++.++||+|.+|  ||+|+|.+||+|+. ++..+|+||||++.++..+ +..|++.++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFNQK   80 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccccceeeE
Confidence            58999999999998762    3567999999998  99999999999987 5568999999999987543 557999999


Q ss_pred             EEEEEEeCCCCceeEeeccc-Cceee----ecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           93 FRLFVLDQKKDEFLILQDAM-GKQRR----FHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        93 ~~~~l~n~~~~~~~~~~~~~-~~~~~----F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      |+|+|+||.++......... .....    +.....+|||.+||++++|+ +++|||+||+|+|+|+|.|
T Consensus        81 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v  149 (152)
T d1czya1          81 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDL  149 (152)
T ss_dssp             EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECC
T ss_pred             EEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEe
Confidence            99999999876554332110 01122    23335689999999999985 4679999999999999976

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-27  Score=187.45  Aligned_cols=131  Identities=28%  Similarity=0.446  Sum_probs=111.1

Q ss_pred             CceEEEEEcccccCCC---ceeecCceEeCC---eeEEEEEecCCCCCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 020276          178 NYKYVWKIENFSKLPD---KIYESEVFVAGD---QKWKILLFPKGLGVASGSHISMYLELTDSSTITGGSKIYVHFTLRI  251 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~~---~~~~S~~f~~~g---~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~~~~~~w~~~~~~~~~l  251 (328)
                      +.+|+|+|.||+.++.   +.+.||.|.++|   ++|+|++||+|.+.+.++||||||.+.+.    ..|++.++|+|.|
T Consensus         4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~----~~~~v~~~~~~~l   79 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI   79 (146)
T ss_dssp             EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC----SSSEEEEECEEEE
T ss_pred             EEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccC----CCceEEEEEEEEE
Confidence            6789999999998873   678999999887   58999999999988778899999999865    3699999999999


Q ss_pred             EcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEeee
Q 020276          252 RNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLGIS  325 (328)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~~~  325 (328)
                      +||+++........             .+.+...+.+|||++||++++|.++.+|||+||+|+|+|+|+|++++
T Consensus        80 ~n~~~~~~~~~~~~-------------~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          80 LNAKGEETKAMESQ-------------RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             ECTTSCEEEEEECS-------------CCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EcCCCCcccceEec-------------ceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            99987654433322             13444567889999999999999988999999999999999999764

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.5e-27  Score=187.36  Aligned_cols=137  Identities=19%  Similarity=0.230  Sum_probs=109.7

Q ss_pred             CCCcEEEEEEcCccccccc----CCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEE
Q 020276           18 VPPAHFLLKIEAFSSLVEN----DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVY   90 (328)
Q Consensus        18 ~~~~~~~w~I~nfs~~~~~----~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~   90 (328)
                      ...|+|+|+|+||+.+++.    .+..++||+|.+|  ||+|+|.+||+|...+...+||||||++.++..+ ..+|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            5689999999999998762    3567999999999  9999999999998744557899999999987643 5689999


Q ss_pred             EEEEEEEEeCCCCceeEeecc----c-----CceeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEE
Q 020276           91 VIFRLFVLDQKKDEFLILQDA----M-----GKQRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVF  156 (328)
Q Consensus        91 ~~~~~~l~n~~~~~~~~~~~~----~-----~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~  156 (328)
                      ++++|.|+||++.........    .     ...+.+.....+|||.+||++++|+  ++|||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEEEE
Confidence            999999999987654322110    0     0112334445679999999999998  68999999999999985

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-27  Score=188.33  Aligned_cols=139  Identities=17%  Similarity=0.241  Sum_probs=108.0

Q ss_pred             CceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEE
Q 020276          178 NYKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHF  247 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~  247 (328)
                      +++|+|+|.|||.++       ...+.||.|.++  |++|+|++||+|++.++++|+||||++.++. +.+..|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            689999999999875       245899999998  9999999999998877788999999998764 335689999999


Q ss_pred             EEEEEcCCCCceeeeeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEE
Q 020276          248 TLRIRNQLVSKHYEKKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVL  322 (328)
Q Consensus       248 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~  322 (328)
                      +|.|+||.++.+.......     .+....-.+.+...+.+|||++||++++|+. .+|||+||+|+|+|+|+|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~-~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRP-----DVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECC-----CTTSGGGSCCSSSBCCCEEEEEEEETCCCCC-STTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeecc-----ccccccccCCCcccccccchhhEEEHHHhcc-cCCcEeCCEEEEEEEEEec
Confidence            9999999877654322210     0000000122334567899999999999964 4799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-27  Score=188.25  Aligned_cols=135  Identities=19%  Similarity=0.244  Sum_probs=109.0

Q ss_pred             CcEEEEEEcCccccccc----CCCeEEcCcEEec--CceEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCCeEEEE
Q 020276           20 PAHFLLKIEAFSSLVEN----DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVGTSSL-GLGWEVYVI   92 (328)
Q Consensus        20 ~~~~~w~I~nfs~~~~~----~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~   92 (328)
                      +|+|+|+|+|||.+++.    .+..++||+|.+|  ||+|+|.+||+|++ ++..+||||||++.+++.+ ...|++.++
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFKQK   80 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTTTTSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccCCcEEEE
Confidence            68999999999998752    3568999999998  99999999999987 5568999999999987643 567999999


Q ss_pred             EEEEEEeCCCCceeEeecc--cCc----eeeecCCCCCCCccccccccccccCCCCeeeCCEEEEEEEEEE
Q 020276           93 FRLFVLDQKKDEFLILQDA--MGK----QRRFHGLKLEWGFDQFIPLEEFINASNGYLVGDTCVFGAEVFV  157 (328)
Q Consensus        93 ~~~~l~n~~~~~~~~~~~~--~~~----~~~F~~~~~~~G~~~fi~~~~L~~~~~~~l~dd~l~i~~~v~v  157 (328)
                      |+|.|+||.+.........  ...    .+.+.....+|||.+||++++|+  ++|||+||+|+|+|+|.+
T Consensus        81 ~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1          81 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHH--TTTTCBTTEEEEEEEECC
T ss_pred             EEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhh--hCCCEECCEEEEEEEEEe
Confidence            9999999987765432210  001    12233345689999999999998  689999999999999865

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=185.06  Aligned_cols=139  Identities=17%  Similarity=0.202  Sum_probs=108.3

Q ss_pred             CceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCCCCCeEEEEEEecCCC-CCCCCCeEEEEE
Q 020276          178 NYKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVASGSHISMYLELTDSS-TITGGSKIYVHF  247 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~~~~~lsvyL~~~~~~-~~~~~w~~~~~~  247 (328)
                      +|+|+|+|.||+.+.       +..++|+.|.++  |++|+|++||+|++.+.++|+||||++.+++ +....|+++++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            689999999999874       247899999998  8999999999999877778999999998764 335689999999


Q ss_pred             EEEEEcCCCCceee-eeeeeeceeeeeeeeccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEEEEe
Q 020276          248 TLRIRNQLVSKHYE-KKAKCKYLKVSIVVFATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVPVLG  323 (328)
Q Consensus       248 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~i~~  323 (328)
                      +|.|+||.++.... ....     ..+....-.+.+...+.+|||++||++++|++  +|||+||+|+|+|+|++.+
T Consensus        82 ~~~l~~q~~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~~  151 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFK-----PDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  151 (155)
T ss_dssp             EEEECCCSSSCCCEEEEEC-----CCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCSS
T ss_pred             EEEEecCCCCccceeEEEe-----eccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeCC
Confidence            99999998765321 1110     00000001133444567899999999999986  7999999999999997643

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-25  Score=177.59  Aligned_cols=139  Identities=19%  Similarity=0.208  Sum_probs=105.9

Q ss_pred             CceEEEEEcccccCC-------CceeecCceEeC--CeeEEEEEecCCCCCC-CCCeEEEEEEecCCC-CCCCCCeEEEE
Q 020276          178 NYKYVWKIENFSKLP-------DKIYESEVFVAG--DQKWKILLFPKGLGVA-SGSHISMYLELTDSS-TITGGSKIYVH  246 (328)
Q Consensus       178 ~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~i~~yp~G~~~~-~~~~lsvyL~~~~~~-~~~~~w~~~~~  246 (328)
                      +|+|+|+|.||++++       +..+.||.|.++  |++|+|.+||+|.+.+ .++|+|+||++.++. +...+|++.++
T Consensus         4 ~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~~~   83 (155)
T d1lb6a_           4 NGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGT   83 (155)
T ss_dssp             CEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred             ccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEEEE
Confidence            799999999999875       346899999999  9999999999998765 357999999998774 34578999999


Q ss_pred             EEEEEEcCCCCceeeeeeeeeceeeeeee-eccceeccCCcCCCCcccceeccccccCCCCeEECCEEEEEEEEE
Q 020276          247 FTLRIRNQLVSKHYEKKAKCKYLKVSIVV-FATGEWLNTSIALGGWSKFIELNYLKKAGNGFLVNDVCIVEAEVP  320 (328)
Q Consensus       247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~i~~~V~  320 (328)
                      ++|.|++|++.........  .....+.. .-..+.+...+.+|||++||++++|++  +|||+||+|+|+|+|+
T Consensus        84 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          84 IRLTILDQSEAPVRQNHEE--IMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             EEEEECCCSCTTSCCCEEE--EEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEECCCCCccceeeEE--eeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            9999999987653211111  00000000 001133444567899999999999986  7999999999999986