Citrus Sinensis ID: 020296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEEEEcccEEEEEEEcccccccccccccEEEEEEccccccccccEEEEcccccccccccccEEEEEEEEcccccccccccccccccEEEEEccccEEEEccccccEEEEEEccccHHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHccccEEEEEEcccccccccccccccHHHHHccccccccccEEEEEccHHHHHHHHccccccccccHHHHHHHHcccccccEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccHHHHccHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccEcccccccEEccEEEEEEEccccEEEEEEcccccccccccccEEEEEEEEccccccccEEEEEEEccccccccccEEEEEEEccccccHHHHHHccccccEEEEEccccEEEEcccHHcEEEEEEEHHHHHHHHHHHHHHHHccccccEEEEEEEEEEHHHcccHHHHHccHHHHccEEEEEEEccccccccccccEccHHHHHHHcccccccEEEEEccccHHHHHHHcccHHccccccccccHHHccccHccEEEc
Coil and Loop (DISEMBL)
MATTFFRRLVKATpiafneafggqpksdfnkfrfpfgAIAAVAGGVSYycyfsspnlvhldqineetdpkialnpdkwigfklqdtarvshnshlfrfsfdpsaklglDVASCiltraplgqdaegntkyvvrpytpisdteakGHFDLLIKvypegkmsqhfaslkpgdvvevkgpieklryspnmkkhigmiaggtgiTPMLQVIEAILknpddntqvsllygnispddiLLKQKLDILAashpnlkvfytvdnptknwkggvgyiskdtalkglpspsddalilvcgppgmmkhvsgekakdysqGELSGILKDLGYTEQMVYKF
Flexible Loop (DISEMBL)
mattffrrLVKAtpiafneafggqpKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTraplgqdaegntkYVVRPytpisdteakGHFDLLIKVYPEGKMSQhfaslkpgdvveVKGPIEklryspnmkKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIlkdlgyteQMVYKF
Low Complexity Region (SEG)
MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPddillkqkldilAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF
Disordered region (IsUnstruct)
***TFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGL****DDALILVCGP*********************GILKDLGYT*******
Disordered Region (DISOPRED)
**********************************PFGAIAAVAGGVSYYCYFSS**********************KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF
Disordered Region (DISEMBL)
MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF
Disordered Region (DISPRO)
***TFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
P83291	328	NADH-cytochrome b5 reduct	yes	no	1.0	1.0	0.780	1e-153
A1CRK9	322	NADH-cytochrome b5 reduct	N/A	no	0.75	0.763	0.492	2e-63
Q54NC1	286	NADH-cytochrome b5 reduct	yes	no	0.817	0.937	0.442	6e-63
A2Q898	322	NADH-cytochrome b5 reduct	yes	no	0.865	0.881	0.434	2e-62
Q2HG02	348	NADH-cytochrome b5 reduct	N/A	no	0.75	0.706	0.478	2e-62
Q2UKB8	323	NADH-cytochrome b5 reduct	yes	no	0.75	0.761	0.478	6e-62
A4QR21	331	NADH-cytochrome b5 reduct	N/A	no	0.783	0.776	0.471	6e-62
Q7SFY2	343	NADH-cytochrome b5 reduct	N/A	no	0.75	0.717	0.482	9e-62
A5DQE4	294	NADH-cytochrome b5 reduct	N/A	no	0.756	0.843	0.466	9e-61
A1D4H0	323	NADH-cytochrome b5 reduct	N/A	no	0.859	0.873	0.430	4e-60

>sp|P83291|NB5R2_ARATH NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=CBR2 PE=1 SV=2

 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/328 (78%), Positives = 290/328 (88%)

Query: 1   MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHL 60
           MAT+FFRRL ++ PI F  AFG Q KS    FRF  GAIAA++GG SYY   S  NLV+L
Sbjct: 1   MATSFFRRLARSAPITFPVAFGSQSKSGSGAFRFSTGAIAALSGGFSYYYLTSGNNLVYL 60

Query: 61  DQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPL 120
           DQ  EET PK ALNPDKW+ FKLQDTARVSHN+ LFRFSFDPSA+LGL VASC+LTRAPL
Sbjct: 61  DQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFDPSAELGLHVASCLLTRAPL 120

Query: 121 GQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180
           G +AEG TKYV+RPYTPISD EAKG+FDLLIKVYP+GKMSQHFASLKPGDV+EVKGP+EK
Sbjct: 121 GYNAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKPGDVLEVKGPVEK 180

Query: 181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240
            +YSPNMKKHIGMIAGG+GITPMLQVI+AI+KNP+DNTQ+SLLY N+SPDDILLKQKLD+
Sbjct: 181 FKYSPNMKKHIGMIAGGSGITPMLQVIDAIVKNPEDNTQISLLYANVSPDDILLKQKLDV 240

Query: 241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSG 300
           L A+HPNLK+FYTVDNPTKNWKGGVGYISKD ALKGLP P+DD LILVCGPPGMM+H+SG
Sbjct: 241 LQANHPNLKIFYTVDNPTKNWKGGVGYISKDMALKGLPLPTDDTLILVCGPPGMMEHISG 300

Query: 301 EKAKDYSQGELSGILKDLGYTEQMVYKF 328
            KA D+SQGE+ GILK+LGYTE+MV+KF
Sbjct: 301 GKAPDWSQGEVKGILKELGYTEEMVFKF 328

Desaturation and elongation of fatty acids.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 2EC: .EC: 2

>sp|A1CRK9|MCR1_ASPCL NADH-cytochrome b5 reductase 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=mcr1 PE=3 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 164/254 (64%), Gaps = 8/254 (3%)

Query: 78  WIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYT 136
           W+  KL +   +SHN+   RF F D  A  GL VAS +LT+    + AEG  K V+RPYT
Sbjct: 74  WVDLKLSEIENLSHNTKRLRFEFADKEAVSGLQVASALLTKF---KPAEG--KPVIRPYT 128

Query: 137 PISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAG 196
           P+SD +  G+ DL++KVYP G MS+H  S+     +E KGPI K  +  N  KHI +IAG
Sbjct: 129 PVSDEDQPGYLDLVVKVYPNGPMSEHLHSMNVDQRLEFKGPIPKYPWETNKHKHICLIAG 188

Query: 197 GTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVD 255
           GTGITPM Q+   I KNP+D T+V+L++GN+S +DILLK++L  L  +HP   K FY +D
Sbjct: 189 GTGITPMYQLARQIFKNPEDQTKVTLVFGNVSEEDILLKKELQELENTHPRRFKAFYVLD 248

Query: 256 NPTKNWKGGVGYISKDTALKGLPSP-SDDALILVCGPPGMMKHVSGEKAKDYSQGELSGI 314
           NP K W GG GY++K+     LP P  +D  I VCGPPGM K +SG K     QGEL+G+
Sbjct: 249 NPPKEWTGGKGYVTKELLKTVLPEPKEEDIKIFVCGPPGMYKAISGPKVSPKDQGELTGL 308

Query: 315 LKDLGYTEQMVYKF 328
           L +LGY +  VYKF
Sbjct: 309 LAELGYNKDQVYKF 322

May mediate the reduction of outer membrane cytochrome b5.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q54NC1|NCB5R_DICDI NADH-cytochrome b5 reductase 1 OS=Dictyostelium discoideum GN=cyb5r1 PE=3 SV=1

 Score =  241 bits (615), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 130/294 (44%), Positives = 185/294 (62%), Gaps = 26/294 (8%)

Query: 40  AAVAGGVSYYCYFSSPNLVHLDQINEETDP----KIALNPDKWIGFKLQDTARVSHNSHL 95
            A+A GV Y    +S +  + D+   E +     + AL+P ++  F+L++   V+HN+ +
Sbjct: 14  VALAAGVKYVFTLTSGS--NKDKKGGEAEKGKQVEKALDPQEYRKFQLKEKFIVNHNTRI 71

Query: 96  FRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY 154
           FRF+  +    LGL +   I  RA +G       K V RPYTPIS  E +G+FDLLIKVY
Sbjct: 72  FRFALPNEDDILGLPIGQHISLRAVVG------GKEVYRPYTPISSDEERGYFDLLIKVY 125

Query: 155 PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP 214
            +G MS +  ++  GD +EVKGP  K  Y PNM+K IGM+AGGTGITPMLQVI+AILKNP
Sbjct: 126 EKGAMSGYVDNMFIGDSIEVKGPKGKFNYQPNMRKSIGMLAGGTGITPMLQVIKAILKNP 185

Query: 215 DDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTAL 274
            D T++SL++GNI+ +DILLK++LD LA  HP  KV+Y ++NP K W  GVG++SK+   
Sbjct: 186 SDKTEISLVFGNITEEDILLKKELDELAEKHPQFKVYYVLNNPPKGWTQGVGFVSKEIIE 245

Query: 275 KGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
             LPSPSD  ++++CGPP M K ++G              L+ +G+ E  ++ F
Sbjct: 246 SRLPSPSDQTMVIMCGPPMMNKAMTGH-------------LETIGFNESNIFTF 286

Electron donor reductase for cytochrome b5. The cytochrome b5/NADH cytochrome b5 reductase electron transfer system supports the catalytic activity of several sterol biosynthetic enzymes.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|A2Q898|MCR1_ASPNC NADH-cytochrome b5 reductase 2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mcr1 PE=3 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 36  FGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDK-WIGFKLQDTARVSHNSH 94
           + A+     GV  Y Y    N    +       PK+    D+ W   KL +   ++HN+ 
Sbjct: 35  YAAVGITGVGVGLYRY----NSATAEAPAAVDRPKVFKGGDQGWFDLKLSEIEVLNHNTK 90

Query: 95  LFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV 153
             RF F D  A  GL VAS +LT+         + K V+RPYTP SD E  G+ DL++KV
Sbjct: 91  RLRFEFEDKEALSGLQVASALLTKF-----KPADAKAVIRPYTPTSDEETPGYIDLVVKV 145

Query: 154 YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN 213
           YP G MS+H  S+  G  ++ KGPI K  +  N   HI +IAGGTGITPM Q+   I KN
Sbjct: 146 YPNGPMSEHLHSMNVGQRLDFKGPIVKYPWETNKHNHICLIAGGTGITPMYQLAREIFKN 205

Query: 214 PDDNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDT 272
           P+D T+V+L++GN+  +DILLK++ + L  ++P   + FY +DNP K W GG GYISK+ 
Sbjct: 206 PEDQTKVTLVFGNVKEEDILLKKEFEELENTYPRRFRAFYVLDNPPKEWTGGKGYISKEL 265

Query: 273 ALKGLPSPSDDAL-ILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
               LP P ++ + I VCGPPGM K +SG K     QGELSGILK+LGY+++ V+KF
Sbjct: 266 LKTVLPEPKEENIKIFVCGPPGMYKAISGTKNSPTDQGELSGILKELGYSKEQVFKF 322

May mediate the reduction of outer membrane cytochrome b5.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q2HG02|MCR1_CHAGB NADH-cytochrome b5 reductase 2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MCR1 PE=3 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/255 (47%), Positives = 167/255 (65%), Gaps = 9/255 (3%)

Query: 78  WIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTR-APLGQDAEGNTKYVVRPY 135
           W+  KL++   V+HNS   RF       + G+ VAS ILT+  P+  DAE   K V+RPY
Sbjct: 99  WVSLKLEEVEIVNHNSKRLRFRLPEDDMVSGVHVASAILTKFKPV--DAE---KPVIRPY 153

Query: 136 TPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIA 195
           TP +D +A+G+ DLL+K YP G MS H   + PG  ++VKGP+ K  ++ N   HI ++A
Sbjct: 154 TPTNDEDARGYLDLLVKKYPNGPMSTHLHDMVPGQRLDVKGPLPKYPWTANKHGHIALVA 213

Query: 196 GGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTV 254
           GGTGITPM Q+  AI  NPDD T+V+L++GN+  DDILLK++L  L  ++P   + FY +
Sbjct: 214 GGTGITPMFQLCRAIFNNPDDQTKVTLVFGNVREDDILLKKELAALENNNPRRFRAFYVL 273

Query: 255 DNPTKNWKGGVGYISKDTALKGLPSPSDDAL-ILVCGPPGMMKHVSGEKAKDYSQGELSG 313
           D+P K+W GG G+I+KD     LP P D+ + + VCGPPGMM  +SG K     QGEL G
Sbjct: 274 DDPPKHWTGGKGFITKDLLKTVLPEPKDENIKVFVCGPPGMMDAISGNKKSPKDQGELKG 333

Query: 314 ILKDLGYTEQMVYKF 328
           ILK+LGY+ + VYKF
Sbjct: 334 ILKELGYSPEQVYKF 348

May mediate the reduction of outer membrane cytochrome b5.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q2UKB8|MCR1_ASPOR NADH-cytochrome b5 reductase 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=mcr1 PE=3 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/255 (47%), Positives = 163/255 (63%), Gaps = 9/255 (3%)

Query: 78  WIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTR-APLGQDAEGNTKYVVRPY 135
           W+  KL +   +SHN+   RF F D  A  G+ +AS +LT+  P+G +     K V+RPY
Sbjct: 74  WVDLKLSEIEVLSHNTKRLRFEFEDKEAVSGVTIASALLTKFKPVGAE-----KAVLRPY 128

Query: 136 TPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIA 195
           TP SD +  G+ DL++KVYP G MS+H  S+     +  KGP+ K ++  N  +HI +IA
Sbjct: 129 TPTSDEDQPGYLDLVVKVYPNGPMSEHLHSMNVDQRLSFKGPLPKYQWETNKHEHIALIA 188

Query: 196 GGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTV 254
           GGTGITPM Q+I  I KNPDD T+V+L+YGN++ DDILLK++L  L  ++P   K FY +
Sbjct: 189 GGTGITPMYQLIRQIFKNPDDKTKVTLVYGNVTEDDILLKKELQDLENTYPQRFKAFYLL 248

Query: 255 DNPTKNWKGGVGYISKDTALKGLPSPSDD-ALILVCGPPGMMKHVSGEKAKDYSQGELSG 313
           D P K W GG GYI+K+     LP P ++   I VCGPPG+   VSG K     QGELSG
Sbjct: 249 DKPPKEWTGGKGYINKELLKTVLPEPKEENQKIFVCGPPGLYNAVSGNKVSPKDQGELSG 308

Query: 314 ILKDLGYTEQMVYKF 328
           ILK+LGY +  VYKF
Sbjct: 309 ILKELGYNKDQVYKF 323

May mediate the reduction of outer membrane cytochrome b5.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|A4QR21|MCR1_MAGO7 NADH-cytochrome b5 reductase 2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MCR1 PE=3 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 169/265 (63%), Gaps = 8/265 (3%)

Query: 68  DPKIALNPDK-WIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTRAPLGQDAE 125
           +PK AL  +K ++  +L D   V+HN+   RF       + GL VAS +LT+       E
Sbjct: 71  EPKKALEMEKGFVSLQLDDVEVVNHNTKRLRFKLPEDDMVSGLHVASALLTKF----KPE 126

Query: 126 GNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSP 185
           G  K V+RPYTPISD + KG+ DL++K Y  G MS H   L PG  ++ KGP+ K  +S 
Sbjct: 127 GAEKPVLRPYTPISDEDQKGYLDLIVKKYEGGPMSTHIHELVPGQKLDFKGPLPKYEWSA 186

Query: 186 NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASH 245
           N   H+ MIAGGTGITPM Q++ AI KNP D T+V+L+ GNI+ +DILLK++L  L  ++
Sbjct: 187 NKHPHVAMIAGGTGITPMYQIMRAIFKNPADKTKVTLVVGNITEEDILLKKQLAELENTY 246

Query: 246 PN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDAL-ILVCGPPGMMKHVSGEKA 303
           P   + FY +DNP K+W G  GYI+KD     LP P ++ + + VCGPPGMMK +SG K 
Sbjct: 247 PQRFRAFYVLDNPPKDWAGTKGYITKDLLKTVLPEPKEENIKVFVCGPPGMMKAISGNKV 306

Query: 304 KDYSQGELSGILKDLGYTEQMVYKF 328
               QGE+SGILK+LGY +  +YKF
Sbjct: 307 SPKDQGEVSGILKELGYKQDQIYKF 331

May mediate the reduction of outer membrane cytochrome b5.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q7SFY2|MCR1_NEUCR NADH-cytochrome b5 reductase 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mcr-1 PE=3 SV=1

 Score =  237 bits (604), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/255 (48%), Positives = 164/255 (64%), Gaps = 9/255 (3%)

Query: 78  WIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTR-APLGQDAEGNTKYVVRPY 135
           W+  KL++   V+HN+   RF       + GL VAS ILT+  P+  DAE   K V+RPY
Sbjct: 94  WLSLKLEEVELVNHNTKRLRFRLPEDDMVSGLHVASAILTKFKPI--DAE---KAVLRPY 148

Query: 136 TPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIA 195
           TPISD  A+G+ DLL+K Y  G MS +   + PG  +++KGP+ K  +  N  KHI ++A
Sbjct: 149 TPISDESAQGYIDLLVKKYEGGPMSTYLHDMAPGQRLDIKGPLPKYPWEANKHKHIALVA 208

Query: 196 GGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTV 254
           GGTGITPM Q+I AI  NPDD T+V+L++GN+S +D+LLK +L  +   +P   + FY +
Sbjct: 209 GGTGITPMYQLIRAIFNNPDDKTKVTLVFGNVSEEDVLLKHELATIENHYPQRFRAFYVL 268

Query: 255 DNPTKNWKGGVGYISKDTALKGLPSP-SDDALILVCGPPGMMKHVSGEKAKDYSQGELSG 313
           DNP K W G  GYI+KD     LP P ++D  I VCGPPGMM  +SG K     QGEL+G
Sbjct: 269 DNPPKEWAGNKGYINKDLLKTVLPEPKNEDIKIFVCGPPGMMNSISGNKKSPRDQGELTG 328

Query: 314 ILKDLGYTEQMVYKF 328
           ILK+LGY+   VYKF
Sbjct: 329 ILKELGYSPDQVYKF 343

May mediate the reduction of outer membrane cytochrome b5.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|A5DQE4|MCR1_PICGU NADH-cytochrome b5 reductase 2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MCR1 PE=3 SV=2

 Score =  234 bits (596), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 119/255 (46%), Positives = 163/255 (63%), Gaps = 7/255 (2%)

Query: 76  DKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRP 134
           D+WI  KL+ +  VS N+  F F    P    GL  ASC++T+      A+GN   V+RP
Sbjct: 45  DEWIDLKLKKSWDVSSNTRHFVFELKSPEDVSGLVTASCLMTKFVT---AKGNN--VIRP 99

Query: 135 YTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMI 194
           YTP+SD + KG  D +IK Y  GKMS HF  LK GD V  KGPI K ++ PN  + I +I
Sbjct: 100 YTPVSDVDQKGTIDFVIKKYDGGKMSTHFHGLKEGDTVSFKGPIVKWKWEPNQFQSIALI 159

Query: 195 AGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYT 253
            GGTGITP+ Q++  I KNP+D T+V L YGN++ +DIL+K++LD +A  H + + + Y 
Sbjct: 160 GGGTGITPLYQLLHEITKNPEDKTKVKLFYGNLTEEDILIKKELDDIAEKHKDQVSITYF 219

Query: 254 VDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSG 313
           VD  + NWKG  G+I K+     LP PS D+ + VCGPPG+ K +SG K     QGE++G
Sbjct: 220 VDKASANWKGETGHIDKEFLQSNLPGPSKDSKVFVCGPPGLYKALSGVKVSPTDQGEVTG 279

Query: 314 ILKDLGYTEQMVYKF 328
           +L +LGYT++ VYKF
Sbjct: 280 VLAELGYTKENVYKF 294

May mediate the reduction of outer membrane cytochrome b5.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|A1D4H0|MCR1_NEOFI NADH-cytochrome b5 reductase 2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=mcr1 PE=3 SV=1

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 174/295 (58%), Gaps = 13/295 (4%)

Query: 38  AIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDK-WIGFKLQDTARVSHNSHLF 96
           A+     GV  Y Y S+       +      PK+    D+ W+  KL     +S N+   
Sbjct: 38  AVGLTGLGVGLYRYNSASA-----EAPPAERPKVFTGGDQGWVDLKLAQIENLSPNTKRL 92

Query: 97  RFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP 155
           RF F D  A  GL VAS +LT+        G  K V+RPYTP+SD E  G+ DL++KVYP
Sbjct: 93  RFEFPDKEAVSGLHVASALLTKF----KPHGAEKPVIRPYTPVSDEEQPGYLDLVVKVYP 148

Query: 156 EGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPD 215
            G MS+H  S+     +E KGPI K  +  N  KHI +IAGGTGITPM Q+   I K+P+
Sbjct: 149 NGPMSEHLHSMNVDQRLEFKGPIPKYPWEANKHKHICLIAGGTGITPMYQLARKIFKDPE 208

Query: 216 DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTAL 274
           D T+V+L++GN+  +DILLK++L  L  ++P   + FY +D+P K W GG GYI+K+   
Sbjct: 209 DQTKVTLVFGNVREEDILLKKELQELENTYPRRFRAFYVLDHPPKEWTGGKGYITKELLK 268

Query: 275 KGLPSPSDDAL-ILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
             LP P ++ + I VCGPPGM K +SG K     QGEL+GIL +LGY++  V+KF
Sbjct: 269 TVLPEPKEENIKIFVCGPPGMYKSISGPKVSPKDQGELTGILAELGYSKDQVFKF 323

May mediate the reduction of outer membrane cytochrome b5.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
255566959	324	NADH-cytochrome B5 reductase, putative [	0.987	1.0	0.810	1e-158
225445442	326	PREDICTED: NADH-cytochrome b5 reductase-	0.984	0.990	0.802	1e-157
224092049	317	predicted protein [Populus trichocarpa]	0.966	1.0	0.801	1e-154
147821410	347	hypothetical protein VITISV_011680 [Viti	0.984	0.930	0.750	1e-153
297808075	328	hypothetical protein ARALYDRAFT_910048 [	1.0	1.0	0.783	1e-152
18420117	328	NADH-cytochrome b5 reductase-like protei	1.0	1.0	0.780	1e-151
449443101	328	PREDICTED: NADH-cytochrome b5 reductase-	0.993	0.993	0.764	1e-147
363807718	323	uncharacterized protein LOC100781191 [Gl	0.975	0.990	0.759	1e-145
358249136	319	uncharacterized protein LOC100819222 [Gl	0.963	0.990	0.759	1e-144
357477997	325	NADH-cytochrome b5 reductase-like protei	0.975	0.984	0.757	1e-144

>gi|255566959|ref|XP_002524462.1| NADH-cytochrome B5 reductase, putative [Ricinus communis] gi|223536250|gb|EEF37902.1| NADH-cytochrome B5 reductase, putative [Ricinus communis]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/328 (81%), Positives = 296/328 (90%), Gaps = 4/328 (1%)

Query: 1   MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHL 60
           MA+ FF+RL KA+ I F    GGQ KS+FN FR P GAIAA +GG+SY  Y+SSPNL +L
Sbjct: 1   MASMFFKRLAKASSIGF----GGQSKSNFNGFRIPIGAIAAASGGISYLYYYSSPNLAYL 56

Query: 61  DQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPL 120
           D++ E+  PK+AL PDKWI FKLQDTARVSHN+ LFRFSFDPSAKLGLD+ASCILTRAPL
Sbjct: 57  DEVKEDAGPKVALKPDKWIEFKLQDTARVSHNTQLFRFSFDPSAKLGLDIASCILTRAPL 116

Query: 121 GQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180
           G DAEG TKYV+RPYTPISD +AKG+FDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK
Sbjct: 117 GHDAEGKTKYVIRPYTPISDPDAKGYFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 176

Query: 181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240
           LRYSPNMKKHIGMIAGG+GITPMLQ+IEAILKNPDDNTQV+LLYGNISPDDILL+QKLD 
Sbjct: 177 LRYSPNMKKHIGMIAGGSGITPMLQIIEAILKNPDDNTQVTLLYGNISPDDILLQQKLDF 236

Query: 241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSG 300
           LAASHPN KVFYTV+NP+KNWKGGVGY+SKD ALKGLP PS+D LILVCGP GMM+H+SG
Sbjct: 237 LAASHPNFKVFYTVENPSKNWKGGVGYVSKDMALKGLPGPSNDTLILVCGPSGMMEHISG 296

Query: 301 EKAKDYSQGELSGILKDLGYTEQMVYKF 328
            KAKDYSQGEL+G+LK+LGYTEQMVYKF
Sbjct: 297 SKAKDYSQGELTGLLKELGYTEQMVYKF 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445442|ref|XP_002285073.1| PREDICTED: NADH-cytochrome b5 reductase-like protein [Vitis vinifera] gi|297738925|emb|CBI28170.3| unnamed protein product [Vitis vinifera]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/324 (80%), Positives = 294/324 (90%), Gaps = 1/324 (0%)

Query: 5   FFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQIN 64
           FF+RL KA+P+AF  AFGGQPKS    FR PFGAIAAV+GG+SYYC FSS NLVHLDQIN
Sbjct: 4   FFKRLAKASPVAFTNAFGGQPKSGARNFRIPFGAIAAVSGGISYYC-FSSENLVHLDQIN 62

Query: 65  EETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDA 124
           E   PK+ALNPDKW+ FKLQDTA VSHN+ LFRFSFDP+AKLGLD+ASCILTRAP+GQD 
Sbjct: 63  ENAGPKVALNPDKWLEFKLQDTASVSHNTQLFRFSFDPTAKLGLDIASCILTRAPIGQDD 122

Query: 125 EGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYS 184
           EG  KYV+RPYTPISD ++KG+FDLLIKVYPEGKMSQHF+ LKPGD++EVKGPIEKLRY+
Sbjct: 123 EGKIKYVIRPYTPISDPDSKGYFDLLIKVYPEGKMSQHFSHLKPGDIIEVKGPIEKLRYT 182

Query: 185 PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS 244
           PNMKK IGMIAGGTGITPMLQ+IEAILKNPDD TQVSL+Y N+SPDDILLK+KLD+LAA+
Sbjct: 183 PNMKKQIGMIAGGTGITPMLQIIEAILKNPDDKTQVSLIYANVSPDDILLKKKLDMLAAT 242

Query: 245 HPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAK 304
           HPNLK+FYTVDNP+ NW+GG GYISKD  +KGLP+PSDD+LILVCGPPGMMKH+SG KAK
Sbjct: 243 HPNLKIFYTVDNPSNNWRGGTGYISKDMVVKGLPAPSDDSLILVCGPPGMMKHISGNKAK 302

Query: 305 DYSQGELSGILKDLGYTEQMVYKF 328
           DYSQGEL+GILK+LGYTE MVYKF
Sbjct: 303 DYSQGELTGILKELGYTEDMVYKF 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092049|ref|XP_002309454.1| predicted protein [Populus trichocarpa] gi|222855430|gb|EEE92977.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 263/328 (80%), Positives = 293/328 (89%), Gaps = 11/328 (3%)

Query: 1   MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHL 60
           MA+TFFRRL KATP++F    GGQPKS F       GAIAAV GG+SY  Y++SPNL HL
Sbjct: 1   MASTFFRRLSKATPVSF----GGQPKSTF-------GAIAAVTGGISYLYYYNSPNLAHL 49

Query: 61  DQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPL 120
           +++  E  PK+ALNPDKWI FKLQDTARVSHN+HLFRFSFDP+AKLGLD+ASCI+TRAP+
Sbjct: 50  EEVKVEGSPKVALNPDKWIEFKLQDTARVSHNTHLFRFSFDPAAKLGLDIASCIITRAPI 109

Query: 121 GQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180
           GQDAEG TKYVVRPYTPISD ++KG+FDLLIKVYPEGKMSQHFA+LK GDVVEVKGPIEK
Sbjct: 110 GQDAEGKTKYVVRPYTPISDPDSKGYFDLLIKVYPEGKMSQHFATLKSGDVVEVKGPIEK 169

Query: 181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240
           LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY N+SPDDILLKQKLD 
Sbjct: 170 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYANVSPDDILLKQKLDF 229

Query: 241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSG 300
           LAASHPNLK+FYTVDNP+KNWKGG G+ISKD  +KGLP P DD LILVCGPPGMMKH+SG
Sbjct: 230 LAASHPNLKIFYTVDNPSKNWKGGSGFISKDMVVKGLPGPCDDTLILVCGPPGMMKHISG 289

Query: 301 EKAKDYSQGELSGILKDLGYTEQMVYKF 328
           +KAKD SQGEL+G+LK+ GYTE+MVYKF
Sbjct: 290 DKAKDRSQGELTGLLKEAGYTEEMVYKF 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821410|emb|CAN63505.1| hypothetical protein VITISV_011680 [Vitis vinifera]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/345 (75%), Positives = 293/345 (84%), Gaps = 22/345 (6%)

Query: 5   FFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLV------ 58
           FF+RL KA+P+AF  AFGGQPKS    FR PFGAIAAV+GG+SYYC FSS NLV      
Sbjct: 4   FFKRLAKASPVAFTNAFGGQPKSGARNFRIPFGAIAAVSGGISYYC-FSSENLVCLVTSL 62

Query: 59  ---------------HLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPS 103
                          HLDQINE   PK+ALNPDKW+ FKLQDTA VSHN+ LFRFSFDP+
Sbjct: 63  MLLQHVTRRIGIRKVHLDQINENAGPKVALNPDKWLEFKLQDTASVSHNTQLFRFSFDPT 122

Query: 104 AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHF 163
           AKLGLD+ASCILTRAP+GQD EG  KYV+RPYTPISD ++KG+FDLLIKVYPEGKMSQHF
Sbjct: 123 AKLGLDIASCILTRAPIGQDDEGKIKYVIRPYTPISDPDSKGYFDLLIKVYPEGKMSQHF 182

Query: 164 ASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLL 223
           + LKPGD++EVKGPIEKLRY+PNMKK IGMIAGGTGITPMLQ+IEAILKNPDD TQVSL+
Sbjct: 183 SHLKPGDIIEVKGPIEKLRYTPNMKKQIGMIAGGTGITPMLQIIEAILKNPDDKTQVSLI 242

Query: 224 YGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDD 283
           Y N+SPDDILLK+KLD+LAA+HPN K+FYTVDNP+ NW+GG GYISKD  +KGLP+PSDD
Sbjct: 243 YANVSPDDILLKKKLDMLAATHPNXKIFYTVDNPSNNWRGGTGYISKDMVVKGLPAPSDD 302

Query: 284 ALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
           +LILVCGPPGMMKH+SG KAKDYSQGEL+GILK+LGYTE MVYKF
Sbjct: 303 SLILVCGPPGMMKHISGNKAKDYSQGELTGILKELGYTEDMVYKF 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808075|ref|XP_002871921.1| hypothetical protein ARALYDRAFT_910048 [Arabidopsis lyrata subsp. lyrata] gi|297317758|gb|EFH48180.1| hypothetical protein ARALYDRAFT_910048 [Arabidopsis lyrata subsp. lyrata]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/328 (78%), Positives = 290/328 (88%)

Query: 1   MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHL 60
           MAT+FFRRL ++ PI F  AFG Q KS    FRF  GAIAA++GG SYY   S  NLV+L
Sbjct: 1   MATSFFRRLARSAPITFPVAFGSQSKSGSGAFRFSTGAIAALSGGFSYYYLTSGNNLVYL 60

Query: 61  DQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPL 120
           DQ  EET PK ALNPDKW+ FKLQDTARVSHN+ LFRFSFDPSA+LGL VASC+LTRAPL
Sbjct: 61  DQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFDPSAQLGLHVASCLLTRAPL 120

Query: 121 GQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180
           G +AEG TKYV+RPYTPISD EAKG+FDLLIKVYP+GKMSQHFASLKPGDV+EVKGP+EK
Sbjct: 121 GYNAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKPGDVLEVKGPVEK 180

Query: 181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240
            +YSPNMKKHIGMIAGG+GITPMLQVI+AI+KNP+DNTQ+SLLY N+SPDDILLKQKLD+
Sbjct: 181 FKYSPNMKKHIGMIAGGSGITPMLQVIDAIVKNPEDNTQISLLYANVSPDDILLKQKLDV 240

Query: 241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSG 300
           L A+HPNLK+FYTVDNPTKNWKGGVGYISKD ALKGLP P+DD LILVCGPPGMM+H+SG
Sbjct: 241 LQANHPNLKIFYTVDNPTKNWKGGVGYISKDMALKGLPLPTDDTLILVCGPPGMMEHISG 300

Query: 301 EKAKDYSQGELSGILKDLGYTEQMVYKF 328
            KA D+SQGE+ GILK+LGYTEQMV+KF
Sbjct: 301 GKAPDWSQGEVKGILKELGYTEQMVFKF 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420117|ref|NP_568391.1| NADH-cytochrome b5 reductase-like protein [Arabidopsis thaliana] gi|51701647|sp|P83291.2|NCB5R_ARATH RecName: Full=NADH-cytochrome b5 reductase-like protein; Short=B5R gi|21592883|gb|AAM64833.1| cytochrome-b5 reductase-like protein [Arabidopsis thaliana] gi|89000937|gb|ABD59058.1| At5g20080 [Arabidopsis thaliana] gi|110742032|dbj|BAE98953.1| cytochrome-b5 reductase - like protein [Arabidopsis thaliana] gi|332005408|gb|AED92791.1| NADH-cytochrome b5 reductase-like protein [Arabidopsis thaliana]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/328 (78%), Positives = 290/328 (88%)

Query: 1   MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHL 60
           MAT+FFRRL ++ PI F  AFG Q KS    FRF  GAIAA++GG SYY   S  NLV+L
Sbjct: 1   MATSFFRRLARSAPITFPVAFGSQSKSGSGAFRFSTGAIAALSGGFSYYYLTSGNNLVYL 60

Query: 61  DQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPL 120
           DQ  EET PK ALNPDKW+ FKLQDTARVSHN+ LFRFSFDPSA+LGL VASC+LTRAPL
Sbjct: 61  DQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFDPSAELGLHVASCLLTRAPL 120

Query: 121 GQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180
           G +AEG TKYV+RPYTPISD EAKG+FDLLIKVYP+GKMSQHFASLKPGDV+EVKGP+EK
Sbjct: 121 GYNAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKPGDVLEVKGPVEK 180

Query: 181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI 240
            +YSPNMKKHIGMIAGG+GITPMLQVI+AI+KNP+DNTQ+SLLY N+SPDDILLKQKLD+
Sbjct: 181 FKYSPNMKKHIGMIAGGSGITPMLQVIDAIVKNPEDNTQISLLYANVSPDDILLKQKLDV 240

Query: 241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSG 300
           L A+HPNLK+FYTVDNPTKNWKGGVGYISKD ALKGLP P+DD LILVCGPPGMM+H+SG
Sbjct: 241 LQANHPNLKIFYTVDNPTKNWKGGVGYISKDMALKGLPLPTDDTLILVCGPPGMMEHISG 300

Query: 301 EKAKDYSQGELSGILKDLGYTEQMVYKF 328
            KA D+SQGE+ GILK+LGYTE+MV+KF
Sbjct: 301 GKAPDWSQGEVKGILKELGYTEEMVFKF 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443101|ref|XP_004139319.1| PREDICTED: NADH-cytochrome b5 reductase-like protein-like [Cucumis sativus]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/327 (76%), Positives = 282/327 (86%), Gaps = 1/327 (0%)

Query: 3   TTFFRRLVKATP-IAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLD 61
            TF RRL  A P + +N   G Q K   + FRFP GAIAA +GG+SY  Y S  +LVHLD
Sbjct: 2   ATFLRRLANAAPSLRYNALLGTQSKIHSSNFRFPIGAIAAASGGISYLYYVSYSDLVHLD 61

Query: 62  QINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLG 121
           Q +EE  PK+AL   KWI FKLQD+ARV+HN+HLFRFSFDPS  LGL+VASCI TRAP+G
Sbjct: 62  QSSEEASPKVALKSGKWIEFKLQDSARVTHNTHLFRFSFDPSETLGLNVASCIYTRAPIG 121

Query: 122 QDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKL 181
           QD EG  KYVVRPYTPISD +AKG+FDLLIKVYP+GKMSQHFA+LKPGDV+EVKGPIEKL
Sbjct: 122 QDDEGKAKYVVRPYTPISDPDAKGYFDLLIKVYPQGKMSQHFATLKPGDVLEVKGPIEKL 181

Query: 182 RYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241
           +YSPNMKKHIGMIAGGTGITPMLQVI+AI+KNPDDNTQVSLLYGN+SPDDILLKQKLDIL
Sbjct: 182 KYSPNMKKHIGMIAGGTGITPMLQVIDAIVKNPDDNTQVSLLYGNVSPDDILLKQKLDIL 241

Query: 242 AASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGE 301
           A+SHPN+KVFYTVD PTKNWKGG GY+SKD  +KGLP P DDALILVCGPPGMMKH+SG+
Sbjct: 242 ASSHPNIKVFYTVDKPTKNWKGGKGYVSKDMVIKGLPPPGDDALILVCGPPGMMKHISGD 301

Query: 302 KAKDYSQGELSGILKDLGYTEQMVYKF 328
           KA DYSQGEL G+LK+LGYT++MVYKF
Sbjct: 302 KAPDYSQGELDGMLKELGYTKEMVYKF 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807718|ref|NP_001242425.1| uncharacterized protein LOC100781191 [Glycine max] gi|255642289|gb|ACU21409.1| unknown [Glycine max]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/324 (75%), Positives = 273/324 (84%), Gaps = 4/324 (1%)

Query: 5   FFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQIN 64
           F RR  +ATPI F      Q  S     R PF AIAA++GGVS+  Y SSPN  H  +  
Sbjct: 4   FLRRFARATPILF----AAQSNSSHTNLRLPFTAIAAISGGVSFLYYHSSPNFAHSQEAE 59

Query: 65  EETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDA 124
           +     IAL PDKW+ FKLQDTARVSHN+ LFRFSFDP+ KLGLD+ASCILTRA LGQDA
Sbjct: 60  QVESKNIALVPDKWVEFKLQDTARVSHNTQLFRFSFDPTQKLGLDIASCILTRASLGQDA 119

Query: 125 EGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYS 184
           EG  K+V+RPYTPISD ++KG+FDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY+
Sbjct: 120 EGKPKFVIRPYTPISDPQSKGYFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYT 179

Query: 185 PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS 244
           PNMKKHIGMIAGGTGITPMLQVIEAILKNPDD TQ+SLLY N+SPDDILLKQKLDILA S
Sbjct: 180 PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDKTQISLLYANVSPDDILLKQKLDILATS 239

Query: 245 HPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAK 304
           HPNLK+FYTVDNPTKNW+GG GYISKD  +KGLP PSDD LILVCGPPGMMK +SGEKAK
Sbjct: 240 HPNLKIFYTVDNPTKNWRGGAGYISKDIVVKGLPGPSDDTLILVCGPPGMMKAISGEKAK 299

Query: 305 DYSQGELSGILKDLGYTEQMVYKF 328
           D++QGE+SG+LK+ GYTEQMVYKF
Sbjct: 300 DWTQGEVSGVLKEAGYTEQMVYKF 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249136|ref|NP_001239743.1| uncharacterized protein LOC100819222 [Glycine max] gi|255645699|gb|ACU23343.1| unknown [Glycine max]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/324 (75%), Positives = 271/324 (83%), Gaps = 8/324 (2%)

Query: 5   FFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQIN 64
             RR   ATPI  N        S     R PF AIAA++GGVS+  Y SSPN  H  +  
Sbjct: 4   LLRRFASATPIPSN--------SSHTNLRLPFTAIAAISGGVSFLFYHSSPNFAHSQEAE 55

Query: 65  EETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDA 124
           +     IAL PDKW+ FKLQDTARVSHN+ LFRFSFDP+ KLGLD+ASCILTRAPLGQDA
Sbjct: 56  QVESKNIALVPDKWVEFKLQDTARVSHNTQLFRFSFDPTQKLGLDIASCILTRAPLGQDA 115

Query: 125 EGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYS 184
           EG  K+V+RPYTPISD E+ G+FDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY+
Sbjct: 116 EGKPKFVIRPYTPISDPESNGYFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYT 175

Query: 185 PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS 244
           PNMKKHIGMIAGGTGITPMLQVIEAIL+NPDD TQ+SLLY N+SPDDILLKQKLDILA S
Sbjct: 176 PNMKKHIGMIAGGTGITPMLQVIEAILRNPDDKTQISLLYANVSPDDILLKQKLDILATS 235

Query: 245 HPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAK 304
           HPNLK+FYTVDNPTKNW+GG GYISKD  +KGLPSPSDD LILVCGPPGMMK +SGEKAK
Sbjct: 236 HPNLKIFYTVDNPTKNWRGGAGYISKDVVVKGLPSPSDDTLILVCGPPGMMKAISGEKAK 295

Query: 305 DYSQGELSGILKDLGYTEQMVYKF 328
           D++QGE+SGILK+ GYTEQMVYKF
Sbjct: 296 DWTQGEVSGILKEAGYTEQMVYKF 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477997|ref|XP_003609284.1| NADH-cytochrome b5 reductase-like protein [Medicago truncatula] gi|355510339|gb|AES91481.1| NADH-cytochrome b5 reductase-like protein [Medicago truncatula]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/326 (75%), Positives = 280/326 (85%), Gaps = 6/326 (1%)

Query: 5   FFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQIN 64
           F RR+ ++TPI F    G   KS  + F  PF AIAA++GG SY  Y SSPNLVH DQI 
Sbjct: 4   FLRRVARSTPIGF----GAHSKSSRSNFHLPFTAIAAISGGFSYLYYSSSPNLVHSDQIG 59

Query: 65  EE--TDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQ 122
           +E      IAL PDKW+ FKLQDTARVSH++HL+RFSFDP+ KLGLDVASCILTRAP GQ
Sbjct: 60  DEDIKTKNIALIPDKWVEFKLQDTARVSHDTHLYRFSFDPTKKLGLDVASCILTRAPFGQ 119

Query: 123 DAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLR 182
           DAE   KYV+RPYTPISDTE+KG+FDLLIKVYPEGKMSQHFASLKPGD+VEVKGPIEK +
Sbjct: 120 DAEEKPKYVIRPYTPISDTESKGYFDLLIKVYPEGKMSQHFASLKPGDMVEVKGPIEKFK 179

Query: 183 YSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILA 242
           Y+PNMKK+IGMIAGG+GITPMLQVIEAILKN DD TQ+SL+Y N+SPDDILL+QKLDILA
Sbjct: 180 YTPNMKKNIGMIAGGSGITPMLQVIEAILKNSDDKTQISLIYANVSPDDILLQQKLDILA 239

Query: 243 ASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEK 302
            SHPNLKVFYTVDNPTK WKGG GYISKD  +KGLP+PSDD L+LVCGPPGMM+H+SGEK
Sbjct: 240 KSHPNLKVFYTVDNPTKTWKGGAGYISKDMVVKGLPAPSDDTLVLVCGPPGMMQHISGEK 299

Query: 303 AKDYSQGELSGILKDLGYTEQMVYKF 328
           AKD++QGE+SGILK+ GYTEQMVYKF
Sbjct: 300 AKDWTQGEVSGILKEAGYTEQMVYKF 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2147680	328	AT5G20080 "AT5G20080" [Arabido	1.0	1.0	0.746	5.4e-134
UNIPROTKB|A4QR21	331	MCR1 "NADH-cytochrome b5 reduc	0.783	0.776	0.445	5.3e-56
ASPGD|ASPL0000053317	322	AN0432 [Emericella nidulans (t	0.893	0.909	0.404	9.9e-55
DICTYBASE|DDB_G0285399	286	cyb5r1 "NADH-cytochrome b5 red	0.780	0.895	0.447	1.9e-53
CGD|CAL0005780	301	MCR1 [Candida albicans (taxid:	0.868	0.946	0.400	4.9e-53
ASPGD|ASPL0000000398	310	AN6366 [Emericella nidulans (t	0.698	0.738	0.414	4.7e-48
SGD|S000001633	302	MCR1 "Mitochondrial NADH-cytoc	0.856	0.930	0.373	5.4e-47
UNIPROTKB|A4R935	309	CBR1 "NADH-cytochrome b5 reduc	0.701	0.744	0.434	1.8e-46
CGD|CAL0001574	294	CBR1 [Candida albicans (taxid:	0.753	0.840	0.406	1.5e-44
UNIPROTKB|Q59P03	294	CBR1 "NADH-cytochrome b5 reduc	0.753	0.840	0.406	1.5e-44

TAIR|locus:2147680 AT5G20080 "AT5G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
 Identities = 245/328 (74%), Positives = 278/328 (84%)

Query:     1 MATTFFRRLVKATPIAFNEAFGGQPKSDFNKFRFPFGAIAAVAGGVSYYCYFSSPNLVHL 60
             MAT+FFRRL ++ PI F  AFG Q KS    FRF  GAIAA++GG SYY   S  NLV+L
Sbjct:     1 MATSFFRRLARSAPITFPVAFGSQSKSGSGAFRFSTGAIAALSGGFSYYYLTSGNNLVYL 60

Query:    61 DQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPL 120
             DQ  EET PK ALNPDKW+ FKLQDTARVSHN+ LFRFSFDPSA+LGL VASC+LTRAPL
Sbjct:    61 DQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFDPSAELGLHVASCLLTRAPL 120

Query:   121 GQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK 180
             G +AEG TKYV+RPYTPISD EAKG+FDLLIKVYP+GKMSQHFASLKPGDV+EVKGP+EK
Sbjct:   121 GYNAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKPGDVLEVKGPVEK 180

Query:   181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPXXXXXXXXXXX 240
              +YSPNMKKHIGMIAGG+GITPMLQVI+AI+KNP+DNTQ+SLLY N+SP           
Sbjct:   181 FKYSPNMKKHIGMIAGGSGITPMLQVIDAIVKNPEDNTQISLLYANVSPDDILLKQKLDV 240

Query:   241 XAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSG 300
               A+HPNLK+FYTVDNPTKNWKGGVGYISKD ALKGLP P+DD LILVCGPPGMM+H+SG
Sbjct:   241 LQANHPNLKIFYTVDNPTKNWKGGVGYISKDMALKGLPLPTDDTLILVCGPPGMMEHISG 300

Query:   301 EKAKDYSQGELSGILKDLGYTEQMVYKF 328
              KA D+SQGE+ GILK+LGYTE+MV+KF
Sbjct:   301 GKAPDWSQGEVKGILKELGYTEEMVFKF 328

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|A4QR21 MCR1 "NADH-cytochrome b5 reductase 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 118/265 (44%), Positives = 159/265 (60%)

Query:    68 DPKIALNPDK-WIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTRAPLGQDAE 125
             +PK AL  +K ++  +L D   V+HN+   RF       + GL VAS +LT+       E
Sbjct:    71 EPKKALEMEKGFVSLQLDDVEVVNHNTKRLRFKLPEDDMVSGLHVASALLTKFK----PE 126

Query:   126 GNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSP 185
             G  K V+RPYTPISD + KG+ DL++K Y  G MS H   L PG  ++ KGP+ K  +S 
Sbjct:   127 GAEKPVLRPYTPISDEDQKGYLDLIVKKYEGGPMSTHIHELVPGQKLDFKGPLPKYEWSA 186

Query:   186 NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPXXXXXXXXXXXXAASH 245
             N   H+ MIAGGTGITPM Q++ AI KNP D T+V+L+ GNI+               ++
Sbjct:   187 NKHPHVAMIAGGTGITPMYQIMRAIFKNPADKTKVTLVVGNITEEDILLKKQLAELENTY 246

Query:   246 PN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDAL-ILVCGPPGMMKHVSGEKA 303
             P   + FY +DNP K+W G  GYI+KD     LP P ++ + + VCGPPGMMK +SG K 
Sbjct:   247 PQRFRAFYVLDNPPKDWAGTKGYITKDLLKTVLPEPKEENIKVFVCGPPGMMKAISGNKV 306

Query:   304 KDYSQGELSGILKDLGYTEQMVYKF 328
                 QGE+SGILK+LGY +  +YKF
Sbjct:   307 SPKDQGEVSGILKELGYKQDQIYKF 331

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000053317 AN0432 [Emericella nidulans (taxid:162425)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 125/309 (40%), Positives = 173/309 (55%)

Query:    25 PKSDFNKFRFPFGAIAAVAG-GVSYYCYFSSPNLVHLDQINEETDPKIALNPDK-WIGFK 82
             PKS   K   P      +AG GV  Y Y S           E   PK+    D+ W+  K
Sbjct:    25 PKS---KSLAPVYVAVGLAGLGVGLYRYQSGAATAEAPA--ER--PKVFTGGDQGWVNLK 77

Query:    83 LQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDT 141
             L D   +SHN+   RF F D  A  GL +AS +LT+       +G+ K V+RPYTP SD 
Sbjct:    78 LSDIEILSHNTKRLRFEFPDKEAVSGLHIASALLTKY---SPPDGS-KPVIRPYTPTSDE 133

Query:   142 EAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGIT 201
             +  G+ +L++K YP G MS+H  ++     ++ KGP+ K  +  N  KHI ++AGGTGIT
Sbjct:   134 DQPGYLELVVKRYPNGPMSEHLHNMNVDQRLDFKGPLPKYPWEANKHKHICLVAGGTGIT 193

Query:   202 PMLQVIEAILKNPDDNTQVSLLYGNISPXXXXXXXXXXXXAASHPN-LKVFYTVDNPTKN 260
             PM Q+   I KNP+D T+V+L++GN+S               ++P   + FY +DNP + 
Sbjct:   194 PMYQLAREIFKNPEDKTKVTLVFGNVSEEDILLKREFEDLENTYPQRFRAFYVLDNPPEG 253

Query:   261 WKGGVGYISKDTALKGLPSPSDDAL-ILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG 319
             W GG GYI+K+     LP P ++ + I VCGPPGM K +SG K     QGEL+GILK+LG
Sbjct:   254 WTGGKGYITKELLKTVLPEPKEENIKIFVCGPPGMYKAISGPKVSPKDQGELTGILKELG 313

Query:   320 YTEQMVYKF 328
             Y++  VYKF
Sbjct:   314 YSKDQVYKF 322

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006696 "ergosterol biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0285399 cyb5r1 "NADH-cytochrome b5 reductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 120/268 (44%), Positives = 167/268 (62%)

Query:    37 GAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKI--ALNPDKWIGFKLQDTARVSHNSH 94
             G++A +A GV Y    +S +         E   ++  AL+P ++  F+L++   V+HN+ 
Sbjct:    12 GSVA-LAAGVKYVFTLTSGSNKDKKGGEAEKGKQVEKALDPQEYRKFQLKEKFIVNHNTR 70

Query:    95 LFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK 152
             +FRF+  P+    LGL +   I  RA +G    G  K V RPYTPIS  E +G+FDLLIK
Sbjct:    71 IFRFAL-PNEDDILGLPIGQHISLRAVVG----G--KEVYRPYTPISSDEERGYFDLLIK 123

Query:   153 VYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILK 212
             VY +G MS +  ++  GD +EVKGP  K  Y PNM+K IGM+AGGTGITPMLQVI+AILK
Sbjct:   124 VYEKGAMSGYVDNMFIGDSIEVKGPKGKFNYQPNMRKSIGMLAGGTGITPMLQVIKAILK 183

Query:   213 NPDDNTQVSLLYGNISPXXXXXXXXXXXXAASHPNLKVFYTVDNPTKNWKGGVGYISKDT 272
             NP D T++SL++GNI+             A  HP  KV+Y ++NP K W  GVG++SK+ 
Sbjct:   184 NPSDKTEISLVFGNITEEDILLKKELDELAEKHPQFKVYYVLNNPPKGWTQGVGFVSKEI 243

Query:   273 ALKGLPSPSDDALILVCGPPGMMKHVSG 300
                 LPSPSD  ++++CGPP M K ++G
Sbjct:   244 IESRLPSPSDQTMVIMCGPPMMNKAMTG 271

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0005780 MCR1 [Candida albicans (taxid:5476)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 121/302 (40%), Positives = 173/302 (57%)

Query:    31 KFRFPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVS 90
             KF  PF    A++ G++    +S+ N    + I  ET  K   + ++W+  KL  +  ++
Sbjct:    13 KFLVPFAGATALSIGLALQ--YSTSN----NYIANETG-KTFTDSNEWVDLKLSKSIDLT 65

Query:    91 HNS-HL-FRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFD 148
             HN+ HL F+   D +   GL  ASC+LT+       +GN   V+RPYTP+SD    G  D
Sbjct:    66 HNTKHLVFKLK-DENDVSGLITASCLLTKFVT---PKGNN--VIRPYTPVSDVNQSGEID 119

Query:   149 LLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIE 208
              +IK Y  GKMS H   LK G+ +  KGPI K ++ PN  K I +I GGTGITP+ Q++ 
Sbjct:   120 FVIKKYDGGKMSSHIFDLKEGETLSFKGPIVKWKWEPNQFKSIALIGGGTGITPLYQLLH 179

Query:   209 AILKNPDDNTQVSLLYGNISPXXXXXXXXXXXXAASHPN-LKVFYTVDNPT-KNWKGGVG 266
              I  NP DNT+V+L+YGN++P            A+ H + +KV Y VD    K W+G +G
Sbjct:   180 QITSNPKDNTKVNLIYGNLTPEDILLKKEIDAIASKHKDQVKVHYFVDKADEKKWEGQIG 239

Query:   267 YISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVY 326
             +I+K+   K L  P  D  + VCGPPG+ K +SG K     QGEL+G LKDLG+ ++ V+
Sbjct:   240 FITKEFLQKELEKPGSDFKVFVCGPPGLYKAISGPKVSPTDQGELTGALKDLGFEKEHVF 299

Query:   327 KF 328
             KF
Sbjct:   300 KF 301

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006696 "ergosterol biosynthetic process" evidence=IEA

ASPGD|ASPL0000000398 AN6366 [Emericella nidulans (taxid:162425)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 99/239 (41%), Positives = 150/239 (62%)

Query:    63 INEETDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFD-PSAKLGLDVASCILTRAPLG 121
             +   + P+  LNP+++  F L++   +SHN  ++RF+   P+  LGL +   I   A + 
Sbjct:    48 VGGSSKPRKVLNPNEFQNFVLKEKNDISHNVTIYRFALPRPTDILGLPIGQHISLAATI- 106

Query:   122 QDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKL 181
                EG  K VVR YTPIS     G+FDLL+K YP+G +S++  +LK GD ++V+GP   +
Sbjct:   107 ---EGQPKEVVRSYTPISSDNEAGYFDLLVKAYPQGNISKYLTTLKVGDTMKVRGPKGAM 163

Query:   182 RYSPNMKKHIGMIAGGTGITPMLQVIEAILKN-P----DDNTQVSLLYGNISPXXXXXXX 236
              Y+PNM +HIGMIAGGTGITPMLQ+I+AI++N P    +D TQV L++ N++P       
Sbjct:   164 VYTPNMCRHIGMIAGGTGITPMLQIIKAIIRNRPRNGGNDTTQVDLIFANVNPDDILLKD 223

Query:   237 XXXXXAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295
                  AA     +++Y ++NP + W GGVG+++ D   + LP+P+ D  IL+CGPP M+
Sbjct:   224 ELEKLAAEDDGFRIYYVLNNPPEGWTGGVGFVTPDMIKERLPAPASDIKILLCGPPPMV 282

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

SGD|S000001633 MCR1 "Mitochondrial NADH-cytochrome b5 reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 111/297 (37%), Positives = 158/297 (53%)

Query:    38 AIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSHLFR 97
             A+  VA   +   YF++ N  H    NE    K+    DKWI   +      SH++  F 
Sbjct:    16 ALGTVAIAAATAFYFANRNQ-HSFVFNESN--KVFKGDDKWIDLPISKIEEESHDTRRFT 72

Query:    98 FSFDPS-AKLGLDVASCILTR--APLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY 154
             F      +++GL +AS +  +   P G +       VVRPYTP+SD   KGHF L++K Y
Sbjct:    73 FKLPTEDSEMGLVLASALFAKFVTPKGSN-------VVRPYTPVSDLSQKGHFQLVVKHY 125

Query:   155 PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP 214
               GKM+ H   LKP D V  KGPI K ++ PN  K I ++  GTGI P+ Q+   I++NP
Sbjct:   126 EGGKMTSHLFGLKPNDTVSFKGPIMKWKWQPNQFKSITLLGAGTGINPLYQLAHHIVENP 185

Query:   215 DDNTQVSLLYGNISPXXXXXXXXXXXXAASHPN-LKVFYTVDNPT--KNWKGGVGYISKD 271
             +D T+V+LLYGN +P               +P+   V Y VD+    +++ G + +ISKD
Sbjct:   186 NDKTKVNLLYGNKTPQDILLRKELDALKEKYPDKFNVTYFVDDKQDDQDFDGEISFISKD 245

Query:   272 TALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
                + +P P +   + VCGPP  M   SGEK     QGEL GIL +LGY++  V+KF
Sbjct:   246 FIQEHVPGPKESTHLFVCGPPPFMNAYSGEKKSPKDQGELIGILNNLGYSKDQVFKF 302

GO:0005758 "mitochondrial intermembrane space" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA;IDA

GO:0006696 "ergosterol biosynthetic process" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A4R935 CBR1 "NADH-cytochrome b5 reductase 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 103/237 (43%), Positives = 140/237 (59%)

Query:    69 PKIALNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGN 127
             PK  L+P K+  F+L++   +SHN  ++R     PS+ LGL +   I   A + Q  +G+
Sbjct:    53 PKKVLDPTKFQEFELKEKTIISHNVAIYRIQLPSPSSILGLPIGQHISIGADIPQP-DGS 111

Query:   128 TKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNM 187
             +K VVR YTPIS  E  G+ DLLIK YP G +S++ A L  G  + V+GP     Y PNM
Sbjct:   112 SKEVVRSYTPISGDEQPGYVDLLIKSYPTGNISKYMAGLSVGQSIRVRGPKGAFVYQPNM 171

Query:   188 KKHIGMIAGGTGITPMLQVIEAILKN--PDDNTQVSLLYGNISPXXXXXXXXXXXXAASH 245
              +H GMIAGGTGITPMLQV+ AI++     D TQV L++ N++             AA  
Sbjct:   172 VRHFGMIAGGTGITPMLQVVRAIVRGRAAGDTTQVDLIFANVTKEDILLKEDLDALAAED 231

Query:   246 PNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEK 302
                +V Y +D P + W GGVG++++D   K LP P+DD  IL+CGPP M   VSG K
Sbjct:   232 KGFRVHYVLDRPPEGWTGGVGFVTQDMITKWLPKPADDVKILLCGPPPM---VSGLK 285

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

CGD|CAL0001574 CBR1 [Candida albicans (taxid:5476)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 107/263 (40%), Positives = 148/263 (56%)

Query:    35 PFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSH 94
             PF   A VA  +S +  +       L Q  + T P   L PD++  F L +  RVSHNS 
Sbjct:    18 PFIVFATVATIISAFIGY-----YFLQQSKKHT-P--VLKPDEFQKFPLIEKIRVSHNSA 69

Query:    95 LFRFSFDPSA-KLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV 153
             ++RF    S  +LGL +   I     +G   +G  K VVR YTPIS  +  GHFDLLIK 
Sbjct:    70 IYRFGLPKSTDRLGLPIGQHI----SIGATIDG--KEVVRSYTPISTDDQLGHFDLLIKT 123

Query:   154 YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN 213
             Y  G +S+H A    G+ +E++GP     Y+PNM K  GMIAGGTGI PM Q+I AILKN
Sbjct:   124 YENGNISRHVAGKNVGEHIEIRGPKGFFTYTPNMVKSFGMIAGGTGIAPMYQIITAILKN 183

Query:   214 PDDNTQVSLLYGNISPXXXXXXXXXXXXAASHPN-LKVFYTVDNPTKNWKGGVGYISKDT 272
             P+D T++ L+Y N++             AA HP+ LK+ Y ++    NW+G VG+++ + 
Sbjct:   184 PEDKTKIHLVYANVTESDILLKEELDNFAARHPDRLKIHYVLNEAPANWQGSVGFVTPEI 243

Query:   273 ALKGLPSPSDDALILVCGPPGMM 295
                 LP  S+D  +L+CGPP M+
Sbjct:   244 IDTHLPKASNDTNLLLCGPPPMV 266

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|Q59P03 CBR1 "NADH-cytochrome b5 reductase 1" [Candida albicans SC5314 (taxid:237561)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 107/263 (40%), Positives = 148/263 (56%)

Query:    35 PFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKLQDTARVSHNSH 94
             PF   A VA  +S +  +       L Q  + T P   L PD++  F L +  RVSHNS 
Sbjct:    18 PFIVFATVATIISAFIGY-----YFLQQSKKHT-P--VLKPDEFQKFPLIEKIRVSHNSA 69

Query:    95 LFRFSFDPSA-KLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV 153
             ++RF    S  +LGL +   I     +G   +G  K VVR YTPIS  +  GHFDLLIK 
Sbjct:    70 IYRFGLPKSTDRLGLPIGQHI----SIGATIDG--KEVVRSYTPISTDDQLGHFDLLIKT 123

Query:   154 YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN 213
             Y  G +S+H A    G+ +E++GP     Y+PNM K  GMIAGGTGI PM Q+I AILKN
Sbjct:   124 YENGNISRHVAGKNVGEHIEIRGPKGFFTYTPNMVKSFGMIAGGTGIAPMYQIITAILKN 183

Query:   214 PDDNTQVSLLYGNISPXXXXXXXXXXXXAASHPN-LKVFYTVDNPTKNWKGGVGYISKDT 272
             P+D T++ L+Y N++             AA HP+ LK+ Y ++    NW+G VG+++ + 
Sbjct:   184 PEDKTKIHLVYANVTESDILLKEELDNFAARHPDRLKIHYVLNEAPANWQGSVGFVTPEI 243

Query:   273 ALKGLPSPSDDALILVCGPPGMM 295
                 LP  S+D  +L+CGPP M+
Sbjct:   244 IDTHLPKASNDTNLLLCGPPPMV 266

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NC1	NCB5R_DICDI	1, ., 6, ., 2, ., 2	0.4421	0.8170	0.9370	yes	no
Q75C62	MCR1_ASHGO	1, ., 6, ., 2, ., 2	0.4032	0.875	0.9379	yes	no
P83291	NB5R2_ARATH	1, ., 6, ., 2, ., 2	0.7804	1.0	1.0	yes	no
P36060	MCR1_YEAST	1, ., 6, ., 2, ., 2	0.3905	0.8567	0.9304	yes	no
Q6BQ54	MCR1_DEBHA	1, ., 6, ., 2, ., 2	0.4025	0.8963	0.9832	yes	no
A3LT66	MCR1_PICST	1, ., 6, ., 2, ., 2	0.4245	0.8963	0.9865	yes	no
Q6FUX5	MCR1_CANGA	1, ., 6, ., 2, ., 2	0.3892	0.8536	0.9395	yes	no
A2Q898	MCR1_ASPNC	1, ., 6, ., 2, ., 2	0.4343	0.8658	0.8819	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.2	0.983
4th Layer	1.6.2.2	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016861001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (326 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
cd06183	234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	1e-106
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	5e-73
PTZ00319	300	PTZ00319, PTZ00319, NADH-cytochrome B5 reductase;	3e-63
PTZ00274	325	PTZ00274, PTZ00274, cytochrome b5 reductase; Provi	6e-47
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	1e-38
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	1e-37
cd06221	253	cd06221, sulfite_reductase_like, Anaerobic sulfite	1e-32
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	1e-32
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	8e-31
pfam00970	99	pfam00970, FAD_binding_6, Oxidoreductase FAD-bindi	1e-27
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	7e-27
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	4e-25
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	1e-24
cd06214	241	cd06214, PA_degradation_oxidoreductase_like, NAD(P	1e-22
cd06191	231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	3e-22
cd06190	232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	1e-21
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	2e-21
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	1e-20
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	2e-20
cd06184	247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	9e-20
PRK08221	263	PRK08221, PRK08221, anaerobic sulfite reductase su	4e-19
cd06209	228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	9e-19
cd06196	218	cd06196, FNR_like_1, Ferredoxin reductase-like pro	4e-18
cd06188	283	cd06188, NADH_quinone_reductase, Na+-translocating	5e-18
cd06210	236	cd06210, MMO_FAD_NAD_binding, Methane monooxygenas	6e-17
TIGR01941	405	TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, N	4e-16
TIGR02911	261	TIGR02911, sulfite_red_B, sulfite reductase, subun	5e-15
COG2871	410	COG2871, NqrF, Na+-transporting NADH:ubiquinone ox	5e-15
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	4e-14
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	1e-13
cd06218	246	cd06218, DHOD_e_trans, FAD/NAD binding domain in t	3e-13
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	3e-13
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	2e-12
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	1e-11
PRK05464	409	PRK05464, PRK05464, Na(+)-translocating NADH-quino	2e-11
PRK13289	399	PRK13289, PRK13289, bifunctional nitric oxide diox	3e-11
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	8e-11
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	9e-11
PRK00054	250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	1e-10
cd06211	238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	2e-10
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	4e-10
COG4097	438	COG4097, COG4097, Predicted ferric reductase [Inor	2e-09
cd06220	233	cd06220, DHOD_e_trans_like2, FAD/NAD binding domai	3e-09
cd06213	227	cd06213, oxygenase_e_transfer_subunit, The oxygena	4e-09
cd06185	211	cd06185, PDR_like, Phthalate dioxygenase reductase	1e-08
cd06192	243	cd06192, DHOD_e_trans_like, FAD/NAD binding domain	1e-08
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	5e-08
PLN03116	307	PLN03116, PLN03116, ferredoxin--NADP+ reductase; P	4e-05
PLN03115	367	PLN03115, PLN03115, ferredoxin--NADP(+) reductase;	8e-05
PRK08051	232	PRK08051, fre, FMN reductase; Validated	1e-04
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	1e-04
PRK05713	312	PRK05713, PRK05713, hypothetical protein; Provisio	2e-04
PRK10684	332	PRK10684, PRK10684, HCP oxidoreductase, NADH-depen	3e-04
cd06219	248	cd06219, DHOD_e_trans_like1, FAD/NAD binding domai	3e-04
PRK06222	281	PRK06222, PRK06222, ferredoxin-NADP(+) reductase s	8e-04
cd06201	289	cd06201, SiR_like2, Cytochrome p450- like alpha su	9e-04

>gnl|CDD|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

 Score =  310 bits (797), Expect = e-106
 Identities = 129/252 (51%), Positives = 168/252 (66%), Gaps = 22/252 (8%)

Query: 81  FKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS 139
           FKL     +SH++ +FRF    P   LGL V   +  +AP       + + VVRPYTPIS
Sbjct: 1   FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAP------DDGEQVVRPYTPIS 54

Query: 140 DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMK-KHIGMIAGGT 198
             + KG+FDLLIK+YP GKMSQ+  SLKPGD VE++GP  K  Y PN K KHIGMIAGGT
Sbjct: 55  PDDDKGYFDLLIKIYPGGKMSQYLHSLKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGT 114

Query: 199 GITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNP 257
           GITPMLQ+I AILK+P+D T++SLLY N + +DILL+++LD LA  HP   KV Y +  P
Sbjct: 115 GITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAKKHPDRFKVHYVLSRP 174

Query: 258 TKNWKGGVGYISKDTALKGLP-SPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILK 316
            + WKGGVG+I+K+   + LP  PS+D L+LVCGPP M++            G + G+LK
Sbjct: 175 PEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIE------------GAVKGLLK 222

Query: 317 DLGYTEQMVYKF 328
           +LGY +  V+KF
Sbjct: 223 ELGYKKDNVFKF 234

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. Length = 234

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score =  241 bits (617), Expect = 5e-73
 Identities = 101/253 (39%), Positives = 143/253 (56%), Gaps = 28/253 (11%)

Query: 67  TDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAE 125
               +ALNP + I  +L +   +SH+  LFRF+       LGL V   +   A +     
Sbjct: 623 PGRPVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATI----- 677

Query: 126 GNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PEG-KMSQHFASLKPGDVVEVKG 176
            N K  +R YTP S  +  GHF+L+IKVY        P G  MSQ+  SL  GD ++VKG
Sbjct: 678 -NGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKG 736

Query: 177 PIEKLRYS----------PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGN 226
           P+  + Y+          P   K + M+AGGTGITPM QVI+AIL++P+D T++SL+Y N
Sbjct: 737 PLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYAN 796

Query: 227 ISPDDILLKQKLDILAASHP-NLKVFYTVDNPTK-NWKGGVGYISKDTALKGLPSPSDDA 284
            + DDILL+++LD  AA HP  LKV+Y V    +  WK  VG +++    + LP   D+ 
Sbjct: 797 RTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDET 856

Query: 285 LILVCGPPGMMKH 297
           L L+CGPP M++ 
Sbjct: 857 LALMCGPPPMIEF 869

Length = 888

>gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional

 Score =  202 bits (515), Expect = 3e-63
 Identities = 101/260 (38%), Positives = 142/260 (54%), Gaps = 35/260 (13%)

Query: 69  PKIALNPDKWIGFKLQDTARVSHNSHLFRFSFD-PSAKLGLDVASCILTRAPLGQDAEGN 127
           P +AL+PD +  FKL     V+H++ +FRF+   P+ +LGL +   I+ R        G 
Sbjct: 24  PPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDC--TTPGK 81

Query: 128 TKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPI 178
            + V   YTPIS  + KG+ D LIKVY +         G++SQH   +K GD +E++GP+
Sbjct: 82  PETVQHSYTPISSDDEKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPV 141

Query: 179 EKLRYSPN------------MKKHI---GMIAGGTGITPMLQVIEAILKNPDDNTQVSLL 223
            K  Y  N               H+    MIAGGTGITPMLQ+I AI KN +D T+V L+
Sbjct: 142 GKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLV 201

Query: 224 YGNISPDDILLKQKLDILAASHPNLKVFYTVDNP-TKNWKGGVGYISKDTALKGLPSPS- 281
           Y N + DDILL+++LD  AA  P   V+YT+D   T  WK G GY+ ++     LP P  
Sbjct: 202 YANQTEDDILLRKELD-EAAKDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDP 260

Query: 282 -----DDALILVCGPPGMMK 296
                   + L+CGPP M++
Sbjct: 261 QNSGIKKVMALMCGPPPMLQ 280

Length = 300

>gnl|CDD|140300 PTZ00274, PTZ00274, cytochrome b5 reductase; Provisional

 Score =  160 bits (407), Expect = 6e-47
 Identities = 101/338 (29%), Positives = 158/338 (46%), Gaps = 54/338 (15%)

Query: 31  KFRFPFGAIAAVA-------GGVSYYCYFSSPNLVHLDQINEETDPKIALNPDKWIGFKL 83
           +F   F A A  A        G    CY S  N +H    N+    ++     ++  ++L
Sbjct: 2   RFVVSFVAGAVGAWVWRPLDSGQDAECYRSIENALHFR--NKPRPGRVF--SQRYEPYQL 57

Query: 84  QDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRP-------YT 136
            +   ++H++ LFRF      +  L   S +          +   KY V+P       YT
Sbjct: 58  GEVIPITHDTALFRFLLHSEEEFNLKPCSTL----------QACYKYGVQPMDQCQRFYT 107

Query: 137 PISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAG 196
           P++    KG+FD+++K   +G M+ H   +  GD +  +    K++Y PN  KH+GMIAG
Sbjct: 108 PVTANHTKGYFDIIVKRKKDGLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWKHVGMIAG 167

Query: 197 GTGITPMLQVIEAILKNP-----DDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKV 250
           GTG TPMLQ+I   L  P      D T++S L+ N +   ILLK   D LA  + N  KV
Sbjct: 168 GTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKV 227

Query: 251 FYTVDNPTK--NWKGGVGYISKDTALKGLPSPSDD-ALILVCGPPGMMKHVSGEKAKDYS 307
           +YT+D   +   W   +GY++K+   + +P+P +   +I++CGP  ++ HV+G      S
Sbjct: 228 YYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLLNHVAGTPMGTMS 287

Query: 308 QGE-----------------LSGILKDLGYTEQMVYKF 328
                               L GIL +LGY    VY+F
Sbjct: 288 SMSSGMNIQPMAPDLNNLVSLGGILGELGYDNDDVYRF 325

Length = 325

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  137 bits (346), Expect = 1e-38
 Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 23/220 (10%)

Query: 88  RVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAE-GNTKYVVRPYTPISDTEAKGH 146
            +S ++ L R      A                GQ         V RPY+  S  + KG 
Sbjct: 17  EISPDTFLLRLRLPFVAL-----------TFKPGQFVMLRVPGGVRRPYSLASAPDDKGE 65

Query: 147 FDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQV 206
            +L I+VY  GK++++   LK GD + V+GP+        + K + +IAGGTGI P+  +
Sbjct: 66  LELHIRVYEVGKVTKYIFGLKEGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAI 125

Query: 207 IEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVG 266
            + + +  D N +V+LLYG  +  D+LL  +L+ LA      K  + V +    WKG  G
Sbjct: 126 AKELKEKGDAN-KVTLLYGARTAKDLLLLDELEELAE-----KEVHPVTDD--GWKGRKG 177

Query: 267 YISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDY 306
           +++ D  LK L     D  + +CGPP M+K V  EK K+Y
Sbjct: 178 FVTTD-VLKELLDLEVD-DVYICGPPAMVKAVR-EKLKEY 214

Length = 252

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score =  133 bits (337), Expect = 1e-37
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKH 190
           + R Y+  S  + +G  +L +K+ P G  S     LKPGD VEV GP             
Sbjct: 40  LRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLKPGDEVEVSGPGGDFFLPLEESGP 99

Query: 191 IGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKV 250
           + +IAGG GITP   ++  +  +     +++LLYG  +P D+L   +L+ LA   PN ++
Sbjct: 100 VVLIAGGIGITPFRSMLRHLAAD-KPGGEITLLYGARTPADLLFLDELEELAKEGPNFRL 158

Query: 251 FYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS 299
              +   ++   G  G I ++  +  L      AL+ +CGPP M K V 
Sbjct: 159 VLALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPPAMAKAVR 207

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

 Score =  121 bits (305), Expect = 1e-32
 Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 32/199 (16%)

Query: 137 PIS---DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGP------IEKLRYSPNM 187
           PIS   D   +G  +L I+    G++++    LKPGD V ++GP      +E+++     
Sbjct: 45  PISISSDPTRRGPLELTIRR--VGRVTEALHELKPGDTVGLRGPFGNGFPVEEMK----- 97

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
            K + ++AGG G+ P+  +I  IL N +D  +V+LLYG  +P+D+L K++L   A    +
Sbjct: 98  GKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAK-RSD 156

Query: 248 LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS 307
           ++V  TVD   + W G VG ++    L  L    D+ + +VCGPP MM+ V+ E      
Sbjct: 157 VEVILTVDRAEEGWTGNVGLVT--DLLPELTLDPDNTVAIVCGPPIMMRFVAKE------ 208

Query: 308 QGELSGILKDLGYTEQMVY 326
                  L  LG  E+ ++
Sbjct: 209 -------LLKLGVPEEQIW 220

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. Length = 253

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score =  116 bits (293), Expect = 1e-32
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 193 MIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFY 252
           MIAGGTGI P+  V++A+L++ +D T+V L+YGN + DD+LL+++L+ LA  +PNLKV  
Sbjct: 1   MIAGGTGIAPLYSVLKALLED-EDGTEVYLVYGNRTEDDLLLREELEELAKKYPNLKVVA 59

Query: 253 TVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
            V      W G  GY++     + L     D  + VCGPP MMK V
Sbjct: 60  -VSRTDDGWYGRKGYVTDALLEEHLSEDLGDTDVYVCGPPPMMKAV 104

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score =  115 bits (291), Expect = 8e-31
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKK 189
             R Y+  S    +G  +L +K  P G++S +    +K GD++EV+GPI    ++P    
Sbjct: 49  AQRSYSIASSPTQRGRVELTVKRVPGGEVSPYLHDEVKVGDLLEVRGPIGTFTWNPLHGD 108

Query: 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLK 249
            + ++AGG+GI P++ +I              LLY   + +D++ + +L+ LA  HPNL 
Sbjct: 109 PVVLLAGGSGIVPLMSMIRYRRDL-GWPVPFRLLYSARTAEDVIFRDELEQLARRHPNLH 167

Query: 250 VFYT-VDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGE 301
           V          +W G  G I+ D   + +P P     + VCGPP  ++  +  
Sbjct: 168 VTEALTRAAPADWLGPAGRITADLIAELVP-PLAGRRVYVCGPPAFVEAATRL 219

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|216220 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding domain

 Score =  103 bits (259), Expect = 1e-27
 Identities = 45/104 (43%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 81  FKLQDTARVSHNSHLFRFSFD-PSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS 139
            KL +   +SH+   FRF+   P   LGL     I  R P       + K VVR Y+P S
Sbjct: 2   AKLVEKESLSHDVRRFRFALPSPDQVLGLPPGQHIFLRLP------IDGKLVVRAYSPAS 55

Query: 140 DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183
             +  G  +LL+KVYP GKMSQ+  SLK GD VEVKGP+    Y
Sbjct: 56  SPDDVGELELLVKVYPGGKMSQYLDSLKIGDTVEVKGPLGHFEY 99

Length = 99

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score =  111 bits (278), Expect = 7e-27
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 39/274 (14%)

Query: 70   KIALNPDKWIGFKLQDT---ARVSHNSHLFRFSFDPSA--KLGLDVASCILTRAPLGQDA 124
            K  L+ DKW    +++     +    S + RF+  P A  + GL +   I  R       
Sbjct: 906  KYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNL-PGALQRSGLTLGQFIAIRG------ 958

Query: 125  EGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKG-------- 176
            + + + ++  Y+PI+  +  G   +L +   +G + +  ++L+PGD VE+K         
Sbjct: 959  DWDGQQLIGYYSPITLPDDLGVISILARG-DKGTLKEWISALRPGDSVEMKACGGLRIER 1017

Query: 177  -PIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP--DDNTQVSLLYGNISPDDI 232
             P +K   +  ++ + + +IAGGTG+ PMLQ+I A LK P  D    + L+Y      ++
Sbjct: 1018 RPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSEL 1077

Query: 233  LLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGP 291
              ++ L+     +P   K  + ++NP + W  GVG++ +      L  PS D L+ +CGP
Sbjct: 1078 TYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGP 1137

Query: 292  PGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMV 325
            P M + V  +             L  LGY  ++V
Sbjct: 1138 PVMQRAVKAD-------------LLALGYNMELV 1158

Length = 1167

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score =  100 bits (251), Expect = 4e-25
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 4/169 (2%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEKLRYSPNMKK 189
             R Y+P +     G  +  ++  P G++S      LK GD V + GP        +  +
Sbjct: 40  TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVGDRVRLSGPYGTFYLRRDHDR 99

Query: 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLK 249
            +  IAGGTG+ P+  ++E  L+  +    V L +G  +  D+   + L  LAA HP L+
Sbjct: 100 PVLCIAGGTGLAPLRAIVEDALRRGEPR-PVHLFFGARTERDLYDLEGLLALAARHPWLR 158

Query: 250 VFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           V   V +    W G  G ++ D   +  P  + D  I +CGPP M+   
Sbjct: 159 VVPVVSHEEGAWTGRRGLVT-DVVGRDGPDWA-DHDIYICGPPAMVDAT 205

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 130 YVVRPYTPIS-DTEAKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNM 187
              R Y+  S  T+  G   L +K  P+G +S    + L PGDVVE+  P         +
Sbjct: 62  RHWRSYSLSSSPTQEDGTITLTVKAQPDGLVSNWLVNHLAPGDVVELSQPQGDFVLPDPL 121

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
              + +IA G+GITP++ ++  +L        V LLY   + +D++   +L  LAA HPN
Sbjct: 122 PPRLLLIAAGSGITPVMSMLRTLLARGPT-ADVVLLYYARTREDVIFADELRALAAQHPN 180

Query: 248 LKV--FYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           L++   YT +          G +S    L  +     D  +  CGPPG +   
Sbjct: 181 LRLHLLYTRE-------ELDGRLSAAH-LDAVVPDLADRQVYACGPPGFLDAA 225

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

 Score = 93.8 bits (234), Expect = 1e-22
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 127 NTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFA-SLKPGDVVEVKGP----IEKL 181
           + + V R Y+ I  +       + +K  P G+ S      LK GD +EV  P        
Sbjct: 46  DGEEVRRSYS-ICSSPGDDELRITVKRVPGGRFSNWANDELKAGDTLEVMPPAGRFTLPP 104

Query: 182 RYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241
                  +H  + A G+GITP+L +++  L     +  V+L+YGN +   ++ +++L  L
Sbjct: 105 LPGA---RHYVLFAAGSGITPVLSILKTALAREPASR-VTLVYGNRTEASVIFREELADL 160

Query: 242 AASHPN-LKVFYTVDNPTKNWKGGVGYISKDTA---LKGLPSPSDDALILVCGPPGMM 295
            A +P+ L V + +     +     G +        LK L   ++     +CGP  MM
Sbjct: 161 KARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMM 218

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

 Score = 93.0 bits (231), Expect = 3e-22
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 120 LGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPI 178
           L  D +G      R Y+ +  + A     + +K  P G++S +    ++PG  VEV GP 
Sbjct: 36  LKLDFDGEELR--RCYS-LCSSPAPDEISITVKRVPGGRVSNYLREHIQPGMTVEVMGPQ 92

Query: 179 EKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238
               Y P       ++A G+GITP++ +I A L+   + +  +L++   +P D++  Q+L
Sbjct: 93  GHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE-SDFTLIHSARTPADMIFAQEL 151

Query: 239 DILAASHPNLKVF--YTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMK 296
             LA     L++   +T +    +   G     +      +P   +     +CGP GMM 
Sbjct: 152 RELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPDRLERE-AFICGPAGMMD 210

Query: 297 HVSG 300
            V  
Sbjct: 211 AVET 214

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 231

>gnl|CDD|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

 Score = 91.2 bits (227), Expect = 1e-21
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 7/163 (4%)

Query: 142 EAKGHFDLLIKVYPEGKMS-QHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGI 200
            A G ++ +IK  P G  S   F +L+PGD +E+ GP       P+  + I  IAGG+G+
Sbjct: 50  NASGEWEFIIKRKPGGAASNALFDNLEPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGL 109

Query: 201 TPMLQVIEAILKNP-DDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPT- 258
            PML ++    ++P   +  V L YG  +P D+    +L  L A    L+V   V +   
Sbjct: 110 APMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSALVALGARLRVTPAVSDAGS 169

Query: 259 ---KNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
                W G  G++  +     L     +      GPP M+  V
Sbjct: 170 GSAAGWDGPTGFVH-EVVEATLGDRLAEFEFYFAGPPPMVDAV 211

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. Length = 232

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 90.3 bits (225), Expect = 2e-21
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 6/183 (3%)

Query: 118 APLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFA-SLKPGDVVEVKG 176
             L  + +G T  V R YT  S         + +K  P G +S     +LK GD +   G
Sbjct: 34  LTLELEIDGET--VYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNLKVGDELWASG 91

Query: 177 PIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ 236
           P  +     +    + +++ G+GITPM+ +   +L    D   +  ++   SP DI+   
Sbjct: 92  PAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD-ADIVFIHSARSPADIIFAD 150

Query: 237 KLDILAASHPNLKVFYTV-DNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295
           +L+ LA  HPN ++   +       W G  G ++ +  L  L     +  + VCGP G M
Sbjct: 151 ELEELARRHPNFRLHLILEQPAPGAWGGYRGRLNAEL-LALLVPDLKERTVFVCGPAGFM 209

Query: 296 KHV 298
           K V
Sbjct: 210 KAV 212

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEKLRYSPNMKKHI 191
           RP++  S     G  +L I+  P G  S + F  LK   +V ++GP+       +  + +
Sbjct: 42  RPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKENGLVRIEGPLGDFFLREDSDRPL 101

Query: 192 GMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF 251
            +IAGGTG  P+  ++E +L        + L +G  + +D+ L + L+  A +HPN    
Sbjct: 102 ILIAGGTGFAPIKSILEHLLAQGSKR-PIHLYWGARTEEDLYLDELLEAWAEAHPNFTYV 160

Query: 252 YTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGM 294
             +  P + W+G  G +  +  L+  P  S D  +  CG P M
Sbjct: 161 PVLSEPEEGWQGRTGLV-HEAVLEDFPDLS-DFDVYACGSPEM 201

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 55/234 (23%), Positives = 89/234 (38%), Gaps = 34/234 (14%)

Query: 75  PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQ------DAEGNT 128
              +    +  T+       +F F+ +P   L LD           GQ         G  
Sbjct: 2   SAGFRRVTV--TSVEPETDDVFSFTLEPPDGLRLDFEP--------GQYITVGLPNGGEP 51

Query: 129 KYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNM 187
             ++R Y+  S  +    + + +K    G  S      LK GD +EV  P          
Sbjct: 52  --LLRAYSLSSAPDEDSLYRISVKREDGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLP 109

Query: 188 KKHIGMIAGGTGITPMLQVIEAILK-NPDDNTQVSLLYGNISPDDILLKQKLDILAASHP 246
           ++ + ++AGG GITP L ++  +L   P D   V L++   +P D+  + +L+ LAA  P
Sbjct: 110 ERKLLLLAGGIGITPFLSMLRTLLDRGPAD---VVLVHAARTPADLAFRDELE-LAAELP 165

Query: 247 NLK--VFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           N      YT            G I  D +     +P     + +CGP   M+ V
Sbjct: 166 NALLLGLYT------ERGKLQGRI--DVSRLLSAAPDGGREVYLCGPGPFMQAV 211

Length = 266

>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin

 Score = 86.5 bits (215), Expect = 9e-20
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 9/181 (4%)

Query: 123 DAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHF-ASLKPGDVVEVKGPIEKL 181
              G     +R Y+ +SD     ++ + +K  P G +S +   ++K GDV+EV  P    
Sbjct: 48  KLPGLGYRQIRQYS-LSDAPNGDYYRISVKREPGGLVSNYLHDNVKVGDVLEVSAPAGDF 106

Query: 182 RYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241
                  + + +I+ G GITPML ++EA+         V+ ++   +      + +L+ L
Sbjct: 107 VLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG-RPVTFIHAARNSAVHAFRDELEEL 165

Query: 242 AASHPNLKVFYTVDNPTKNWKGG----VGYISKDTALKGLPSPSDDALILVCGPPGMMKH 297
           AA  PNLK+      P    +       G I      + L     DA   +CGP   M+ 
Sbjct: 166 AARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLLPA--DADFYLCGPVPFMQA 223

Query: 298 V 298
           V
Sbjct: 224 V 224

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247

>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B; Provisional

 Score = 85.0 bits (211), Expect = 4e-19
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 22/169 (13%)

Query: 137 PISDTEA-KGHFDLLI-KVYPEGKMSQHFASLKPGDVVEVKGP------IEKLRYSPNMK 188
           PIS ++   G+ DL I +V   GK++    +LK GD + ++GP      ++  +      
Sbjct: 50  PISVSDYGDGYIDLTIRRV---GKVTDEIFNLKEGDKLFLRGPYGNGFPVDTYK-----G 101

Query: 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL 248
           K + ++AGGTG+ P+  ++    +NP +   + L+ G  +PDDIL K+ L          
Sbjct: 102 KELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDLKRWREKIN-- 159

Query: 249 KVFYTVDNPTKNWKGGVGYISKDTALKGLP-SPSDDALILVCGPPGMMK 296
            +  T+D   + ++G VG ++K   +  L     D+  ++V GPP MMK
Sbjct: 160 -LILTLDEGEEGYRGNVGLVTK--YIPELTLKDIDNMQVIVVGPPIMMK 205

Length = 263

>gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

 Score = 83.0 bits (206), Expect = 9e-19
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASL-KPGDVVEVKGPIE--KLRYSPNM 187
             R Y+  S        + LI++ P G MS +     +PGD + + GP+    LR    +
Sbjct: 46  ETRSYSF-SSAPGDPRLEFLIRLLPGGAMSSYLRDRAQPGDRLTLTGPLGSFYLR---EV 101

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
           K+ + M+AGGTG+ P L +++ + ++   +  V L+YG     D++   +L+ LA   P 
Sbjct: 102 KRPLLMLAGGTGLAPFLSMLDVLAEDGSAH-PVHLVYGVTRDADLVELDRLEALAERLPG 160

Query: 248 LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGM 294
                 V +P  +W    GY++     + L     D  + +CGPP M
Sbjct: 161 FSFRTVVADP-DSWHPRKGYVTDHLEAEDLNDG--DVDVYLCGPPPM 204

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228

>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

 Score = 81.5 bits (202), Expect = 4e-18
 Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 50/250 (20%)

Query: 82  KLQDTARVSHNSHLFRFS----FDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTP 137
            L     V+H+    RF     +D +     +VA           D  G  +   RP+T 
Sbjct: 4   TLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAI----------DKPG-WRDEKRPFTF 52

Query: 138 ISDTEAKGHFDLLIKVYPE-GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGM-IA 195
            S  E     + +IK YP+   +++    L+PGD + ++ P   + Y     K  G+ IA
Sbjct: 53  TSLPEDD-VLEFVIKSYPDHDGVTEQLGRLQPGDTLLIEDPWGAIEY-----KGPGVFIA 106

Query: 196 GGTGITPMLQVIEAILKNP--DDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYT 253
           GG GITP + ++  +      + NT   L++ N +  DI+LK +L+        LK    
Sbjct: 107 GGAGITPFIAILRDLAAKGKLEGNT---LIFANKTEKDIILKDELE----KMLGLKFINV 159

Query: 254 V-DNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312
           V D     +    G I K   LK   +  +     VCGPP M +              ++
Sbjct: 160 VTDEKDPGYAH--GRIDKAF-LKQHVTDFNQHF-YVCGPPPMEE-------------AIN 202

Query: 313 GILKDLGYTE 322
           G LK+LG  E
Sbjct: 203 GALKELGVPE 212

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 218

>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

 Score = 82.4 bits (204), Expect = 5e-18
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 16/182 (8%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPIEKL 181
           V R Y+  +    +G   L +++          P G  S +  +LKPGD V   GP  + 
Sbjct: 85  VSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEF 144

Query: 182 RYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241
            +  +  + +  I GG G+ P+   I  +LK      ++S  YG  S  ++  +++ + L
Sbjct: 145 -FIKDTDREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEAL 203

Query: 242 AASHPNLKVFYTVDNPTK--NWKGGVGYISK---DTALKGLPSPSDDALILVCGPPGMMK 296
               PN K    +  P    NW G  G+I +   +  LK  P+P +D    +CGPP M  
Sbjct: 204 EKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQVLLENYLKKHPAP-EDIEFYLCGPPPMNS 262

Query: 297 HV 298
            V
Sbjct: 263 AV 264

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283

>gnl|CDD|99806 cd06210, MMO_FAD_NAD_binding, Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHI 191
           R Y+  +     G  + LI++ P G  S +  +  K G  + ++GP+       N  +  
Sbjct: 52  RSYSLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQRLNLRGPLGAFGLRENGLRPR 111

Query: 192 GMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF 251
             +AGGTG+ P+L ++   +    +  +  L +G  +  ++    +L  LA S PNL V 
Sbjct: 112 WFVAGGTGLAPLLSMLRR-MAEWGEPQEARLFFGVNTEAELFYLDELKRLADSLPNLTVR 170

Query: 252 YTVDNPTKNWKGGVGYISK--DTALKGLPSPSDDALILVCGPPGM 294
             V  P   W+G  G +       L    +  D   I +CGPPGM
Sbjct: 171 ICVWRPGGEWEGYRGTVVDALREDLASSDAKPD---IYLCGPPGM 212

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. Length = 236

>gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

 Score = 77.9 bits (192), Expect = 4e-16
 Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 29/213 (13%)

Query: 127 NTKYVVRPYTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGP 177
             +  VR Y+  +    KG   L +++          P G MS +  SLKPGD V + GP
Sbjct: 201 VDEETVRAYSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGP 260

Query: 178 IEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQK 237
             +  ++ +    +  I GG G+ PM   I   LK      ++S  YG  S  ++  ++ 
Sbjct: 261 FGEF-FAKDTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQED 319

Query: 238 LDILAASHPNLK--VFYTVDNPTKNWKGGVGYISK---DTALKGLPSPSDDALILVCGPP 292
            D L A +PN    V  +   P  NW G  G+I     +  LK   +P +D    +CGPP
Sbjct: 320 FDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYENYLKDHDAP-EDCEFYMCGPP 378

Query: 293 GMMKHVSGEKAKDYSQGELSGILKDLGYTEQMV 325
            M   V               +L+DLG   + +
Sbjct: 379 MMNAAV-------------IKMLEDLGVERENI 398

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump [Transport and binding proteins, Cations and iron carrying compounds]. Length = 405

>gnl|CDD|131957 TIGR02911, sulfite_red_B, sulfite reductase, subunit B

 Score = 73.3 bits (180), Expect = 5e-15
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 8/162 (4%)

Query: 137 PISDTE-AKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMK-KHIGMI 194
           PIS +   +G+ DL I+    GK++    +LK GD + ++GP        N K K + ++
Sbjct: 48  PISVSGIGEGYIDLTIRRV--GKVTDEVFTLKEGDNLFLRGPYGNGFDVDNYKHKELVVV 105

Query: 195 AGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTV 254
           AGGTG+ P+  V+E  +KNP +   ++L+ G  +PDDIL K+    +A    N+ +  T+
Sbjct: 106 AGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKED---IAEWKGNINLTLTL 162

Query: 255 DNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMK 296
           D   +++KG +G ++K      L    ++   +V GPP MMK
Sbjct: 163 DEAEEDYKGNIGLVTKYIPELTL-KDIEEVQAIVVGPPIMMK 203

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum [Central intermediary metabolism, Sulfur metabolism]. Length = 261

>gnl|CDD|225426 COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

 Score = 74.8 bits (184), Expect = 5e-15
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 17/206 (8%)

Query: 128 TKYVVRPYTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPI 178
            + ++R Y+  S  E KG   L +++          P G+MS +  SLKPGD V + GP 
Sbjct: 207 DEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPF 266

Query: 179 EKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238
            +  ++ +    +  I GG G+ PM   I   LK      ++S  YG  S  ++  ++  
Sbjct: 267 GEF-FAKDTDAEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDF 325

Query: 239 DILAASHPNLKVFYTVDNPTK--NWKGGVGYISK---DTALKGLPSPSDDALILVCGPPG 293
           D L A +PN      + +P    NW G  G+I     +  LK   +P +D    +CGPP 
Sbjct: 326 DQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLKDHEAP-EDCEYYMCGPP- 383

Query: 294 MMKHVSGEKAKDYSQGELSGILKDLG 319
           +M     +  KD      + +L D G
Sbjct: 384 LMNASVIKMLKDLGVERENILLDDFG 409

Length = 410

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 130 YVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEKLRYSPNMK 188
            + R Y+P S  +     +  I+  P G  S       +PG  + ++GP  +  Y P   
Sbjct: 37  GLARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEARPGHALRLQGPFGQAFYRPEYG 96

Query: 189 -KHIGMIAGGTGITPMLQVI-EAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP 246
              + ++  GTG+ P+  +   A+ +      ++ L++G   PDD+ L   L  LA  HP
Sbjct: 97  EGPLLLVGAGTGLAPLWGIARAALRQGH--QGEIRLVHGARDPDDLYLHPALLWLAREHP 154

Query: 247 NLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGM 294
           N +    V   +   +G     +   A    P   DD ++ +CG P M
Sbjct: 155 NFRYIPCVSEGS---QGDPRVRAGRIAAHLPPLTRDD-VVYLCGAPSM 198

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 143 AKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGIT 201
             G  + +IK YP G  S      L  GD V V GP        +  + I +I GG+G+ 
Sbjct: 57  DPGRLEFIIKKYPGGLFSSFLDDGLAVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMA 116

Query: 202 PMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKN- 260
           P+L ++  +  +  D   V   YG  +  D+   +++  L    P+      +     + 
Sbjct: 117 PLLSLLRDMAASGSDRP-VRFFYGARTARDLFYLEEIAALGEKIPDFTFIPALSESPDDE 175

Query: 261 -WKGGVGYISKDTALKGLPSPSDDALILVCGPPGM 294
            W G  G ++ +   +   +      + +CGPP M
Sbjct: 176 GWSGETGLVT-EVVQRNEAT-LAGCDVYLCGPPPM 208

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|99814 cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 26/183 (14%)

Query: 137 PIS--DTEA-KGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYS-PNMKKHIG 192
           PIS  D +  +G   LL KV   GK ++  + LK GD ++V GP+    +  P+    + 
Sbjct: 46  PISIHDVDPEEGTITLLYKVV--GKGTRLLSELKAGDELDVLGPLGN-GFDLPDDDGKVL 102

Query: 193 MIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFY 252
           ++ GG GI P+L + + +    +   +V++L G  S DD+ L ++ + L A         
Sbjct: 103 LVGGGIGIAPLLFLAKQL---AERGIKVTVLLGFRSADDLFLVEEFEALGAEV----YVA 155

Query: 253 TVDNPTKNWKGGVGYISKDTAL--KGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQ-G 309
           T D       G  G     T L  + L     D  +  CGP  M+K V+ E A +     
Sbjct: 156 TDD-------GSAGTKGFVTDLLKELLAEARPDV-VYACGPEPMLKAVA-ELAAERGVPC 206

Query: 310 ELS 312
           ++S
Sbjct: 207 QVS 209

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 246

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 58/260 (22%)

Query: 86  TARVSHNSHLFRFSFDPS----------AKLGLDVASCILTRAPLGQDAEGNTKYVVRPY 135
             R      LF F                KLGL                  + K V R Y
Sbjct: 3   LKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPN---------------DDGKLVRRAY 47

Query: 136 TPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEV-KGPIEK--LRYSPNMKKHIG 192
           + I+    + + +  I + P+G ++     LKPGD + V K P     L   P  K+   
Sbjct: 48  S-IASAPYEENLEFYIILVPDGPLTPRLFKLKPGDTIYVGKKPTGFLTLDEVPPGKRLW- 105

Query: 193 MIAGGTGITPMLQVIEAILKNPD---DNTQVSLLYGNISPDDILLKQKLDILAASH-PNL 248
           ++A GTGI P L    ++L++ +      ++ L++G    +++  + +++ LA  +    
Sbjct: 106 LLATGTGIAPFL----SMLRDLEIWERFDKIVLVHGVRYAEELAYQDEIEALAKQYNGKF 161

Query: 249 KVFYTVDNPTKNWKGGVGYIS---KDTALK---GLPSPSDDALILVCGPPGMMKHVSGEK 302
           +    V    +N     G I    +   L+   GLP   + + +++CG P M+       
Sbjct: 162 RYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDT---- 216

Query: 303 AKDYSQGELSGILKDLGYTE 322
                      +LK+ G+++
Sbjct: 217 ---------QELLKEKGFSK 227

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHI 191
           R Y+  +   A      LI++ P+G MS +     + GD +  + P+    Y   +++ +
Sbjct: 154 RSYSFANRPNATNQLQFLIRLLPDGVMSNYLRERCQVGDEILFEAPLGAF-YLREVERPL 212

Query: 192 GMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF 251
             +AGGTG++  L +++ + +       V L YG     D+   Q+L   A   PN +  
Sbjct: 213 VFVAGGTGLSAFLGMLDELAEQGCSP-PVHLYYGVRHAADLCELQRLAAYAERLPNFRYH 271

Query: 252 YTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
             V   + +W+G  GYI +      L   + D  + +CGPP M++ V
Sbjct: 272 PVVSKASADWQGKRGYIHEHFDKAQLRDQAFD--MYLCGPPPMVEAV 316

Length = 340

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 12/134 (8%)

Query: 166 LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYG 225
           LKPG  V V+GP  +  +     + I  IAGG GITP L ++EA+    D    V+L Y 
Sbjct: 74  LKPGTRVTVEGPYGRFTFDDRRARQI-WIAGGIGITPFLALLEALAARGDAR-PVTLFYC 131

Query: 226 NISPDDILLKQKL-DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDA 284
              P+D +   +L  + AA+   L V   +D+P+         +        L     DA
Sbjct: 132 VRDPEDAVFLDELRALAAAAGVVLHV---IDSPSDGRLTLEQLVRA------LVPDLADA 182

Query: 285 LILVCGPPGMMKHV 298
            +  CGPPGM   +
Sbjct: 183 DVWFCGPPGMADAL 196

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|235481 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 51/153 (33%), Positives = 68/153 (44%), Gaps = 15/153 (9%)

Query: 155 PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIG--M--IAGGTGITPMLQVIEAI 210
           P G MS +  SLKPGD V + GP     +     K     M  I GG G+ PM   I   
Sbjct: 242 PPGIMSSYIFSLKPGDKVTISGP-----FGEFFAKDTDAEMVFIGGGAGMAPMRSHIFDQ 296

Query: 211 LKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYI 268
           LK      ++S  YG  S  ++   +  D LAA +PN K    + +P    NW G  G+I
Sbjct: 297 LKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFI 356

Query: 269 SK---DTALKGLPSPSDDALILVCGPPGMMKHV 298
                +  LK   +P +D    +CGPP M   V
Sbjct: 357 HNVLYENYLKDHEAP-EDCEYYMCGPPMMNAAV 388

Length = 409

>gnl|CDD|237337 PRK13289, PRK13289, bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 12/182 (6%)

Query: 123 DAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHF-ASLKPGDVVEVKGPIEKL 181
           + E   +  +R Y+ +SD     ++ + +K    GK+S +    +  GDV+E+  P    
Sbjct: 198 EGEEYQE--IRQYS-LSDAPNGKYYRISVKREAGGKVSNYLHDHVNVGDVLELAAPAGDF 254

Query: 182 RYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241
                    + +I+GG GITPML ++E +         V  ++   +      + +++ L
Sbjct: 255 FLDVASDTPVVLISGGVGITPMLSMLETLAAQ-QPKRPVHFIHAARNGGVHAFRDEVEAL 313

Query: 242 AASHPNLKVFYTVDNPTKNWKGGV-----GYISKDTALKGLPSPSDDALILVCGPPGMMK 296
           AA HPNLK       PT+  + G      G +  +  L+    P  DA    CGP   M+
Sbjct: 314 AARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLE-WLEAW-LPDPDADFYFCGPVPFMQ 371

Query: 297 HV 298
            V
Sbjct: 372 FV 373

Length = 399

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 61.8 bits (150), Expect = 8e-11
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRY--SPNMKK 189
           R Y+ I    A G   + +K  P G  S      ++PGD +EV  P        S     
Sbjct: 52  RSYS-ICSAPAPGEIRVAVKKIPGGLFSTWANDEIRPGDTLEVMAPQGLFTPDLSTPHAG 110

Query: 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP 246
           H   +A G+GITPML + E +L   +  +  +L+YGN     ++  ++L  L   HP
Sbjct: 111 HYVAVAAGSGITPMLSIAETVLAA-EPRSTFTLVYGNRRTASVMFAEELADLKDKHP 166

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 61.4 bits (149), Expect = 9e-11
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 144 KGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKH-IGMIAGGTGITP 202
           KG F+L I+    G+++     LK GD+V V+GP         M+   + +IAGG G+ P
Sbjct: 65  KGFFELCIR--RAGRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAP 122

Query: 203 MLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF----YTVDNPT 258
           +  V+   + N      ++L+YG    +D+L   +L    A   N+K+        + P 
Sbjct: 123 LRSVLLYAMDNRWKYGNITLIYGAKYYEDLLFYDELIKDLAEAENVKIIQSVTRDPEWPG 182

Query: 259 KNW--KGGVGYISKDTALKGLPSPSDD---ALILVCGPPGMMKHV 298
            +   +G +  + K          + D       +CGPP M K V
Sbjct: 183 CHGLPQGFIERVCKGVVTDLFREANTDPKNTYAAICGPPVMYKFV 227

Length = 289

>gnl|CDD|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 20/166 (12%)

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIG 192
           RP + ISD       ++ I     G+ ++  + LK GD ++++GP+        +   + 
Sbjct: 51  RPIS-ISD---IDKNEITILYRKVGEGTKKLSKLKEGDELDIRGPLGNGFDLEEIGGKVL 106

Query: 193 MIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFY 252
           ++ GG G+ P+ ++ + + K      +V+ + G  + D+++ +++   +        V+ 
Sbjct: 107 LVGGGIGVAPLYELAKELKKK---GVEVTTVLGARTKDEVIFEEEFAKVG------DVYV 157

Query: 253 TVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           T D+ +  +KG   +++    L  L S  D   I  CGP  MMK V
Sbjct: 158 TTDDGSYGFKG---FVT--DVLDELDSEYD--AIYSCGPEIMMKKV 196

Length = 250

>gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHF-ASLKPGDVVEVKGPIEKLRYSPNMKK 189
             R ++  S     G  +L I++ P G  + +    LK GD +E+ GP        + ++
Sbjct: 51  GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVHKQLKEGDELEISGPYGDFFVRDSDQR 110

Query: 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLK 249
            I  IAGG+G++    +I  +L    D  +++L +G  +  ++    + + L   HPN K
Sbjct: 111 PIIFIAGGSGLSSPRSMILDLL-ERGDTRKITLFFGARTRAELYYLDEFEALEKDHPNFK 169

Query: 250 VFYTVDNPTK--NWKGGVGYISKDTALKGLPSPSDDALILVCGPPGM 294
               +       NWKG  G++  D A K   +        +CGPP M
Sbjct: 170 YVPALSREPPESNWKGFTGFVH-DAAKKHFKNDFRGHKAYLCGPPPM 215

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 30/207 (14%)

Query: 119 PLGQDAEGNTKYVVRPY----TPISDTEAKGHFDLLIK--VY--PEGKM------SQHFA 164
           P G DA+    + +R Y    +   D        L +K  VY  PE         S +  
Sbjct: 51  PPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLC 110

Query: 165 SLKPGDVVEVKGPIEK---LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQ-- 219
            LKPGD V++ GP+ K   L   PN    + MIA GTGI P    +  + +    + +  
Sbjct: 111 DLKPGDDVQITGPVGKTMLLPEDPNAT--LIMIATGTGIAPFRSFLRRLFREKHADYKFT 168

Query: 220 --VSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYIS-----KD 271
               L +G  + D +L   +L+     +P N ++ Y      KN  GG  Y+        
Sbjct: 169 GLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYA 228

Query: 272 TALKGLPSPSDDALILVCGPPGMMKHV 298
             +  L    D+  + +CG  GM   V
Sbjct: 229 EEIWNLLD-KDNTHVYICGLKGMEPGV 254

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 16/136 (11%)

Query: 166 LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYG 225
           LK G  +EV GP  K  +   +   +  IAGG GITP + ++  + +   D   V L Y 
Sbjct: 294 LKVGTKLEVDGPYGKFDFERGLNTQV-WIAGGIGITPFISMLFTLAERKSD-PPVHLFYC 351

Query: 226 NISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDAL 285
           + + ++ L  ++L  LA   PN+ +               GY+ ++     L    D   
Sbjct: 352 SRNWEEALYAEELRALAQKLPNVVL-------HIIDSSKDGYLDQE----DLERYPDRPR 400

Query: 286 ---ILVCGPPGMMKHV 298
              +  CGP  MM  +
Sbjct: 401 TRSVFFCGPIKMMDSL 416

Length = 438

>gnl|CDD|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 18/142 (12%)

Query: 157 GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD 216
           G+ +     LK GD + ++GP     +     K + +I GG GI P+  + E + K  D 
Sbjct: 59  GEATSALHDLKEGDKLGIRGPYGN-GFELVGGK-VLLIGGGIGIAPLAPLAERLKKAAD- 115

Query: 217 NTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKG 276
              V++L G  + +++L    LD L  S    ++  T D+ +  +KG V        LK 
Sbjct: 116 ---VTVLLGARTKEELLF---LDRLRKSD---ELIVTTDDGSYGFKGFV-----TDLLKE 161

Query: 277 LPSPSDDALILVCGPPGMMKHV 298
           L     DA I VCGP  MM  V
Sbjct: 162 LDLEEYDA-IYVCGPEIMMYKV 182

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 233

>gnl|CDD|99809 cd06213, oxygenase_e_transfer_subunit, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 10/168 (5%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEKLRYSPNMKK 189
             R Y+  +  +  G     I+  P G  S   F + + G+ + V+GP       P    
Sbjct: 43  AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGADRTGERLTVRGPFGDFWLRPG-DA 101

Query: 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLK 249
            I  IAGG+G+ P+L ++E           V+LL+G  +  D+    ++  +AA      
Sbjct: 102 PILCIAGGSGLAPILAILEQARAAGTKR-DVTLLFGARTQRDLYALDEIAAIAARWRGRF 160

Query: 250 VFYTV---DNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGM 294
            F  V   +    +WKG  G +++   +  +   + +A   +CGPP M
Sbjct: 161 RFIPVLSEEPADSSWKGARGLVTE--HIAEVLLAATEA--YLCGPPAM 204

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 227

>gnl|CDD|99782 cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 26/172 (15%)

Query: 132 VRPYTPISDTEAKGHFDLLIKVYPEGK-----MSQHFASLKPGDVVEVKGPIEKLRYSPN 186
           VR Y+   D   +  + + +   P  +     M  H   L+ GD +EV  P         
Sbjct: 41  VRQYSLCGDPADRDRYRIAVLREPASRGGSRYM--H-ELLRVGDELEVSAPRNLFPLDEA 97

Query: 187 MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP 246
            ++H+ +IAGG GITP+L +  A+           L Y   S +D      LD LAA   
Sbjct: 98  ARRHL-LIAGGIGITPILSMARALAA---RGADFELHYAGRSREDAAF---LDELAALPG 150

Query: 247 NLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           +    +  D      +GG   ++       L +P     + VCGP GMM  V
Sbjct: 151 DRVHLHFDD------EGGRLDLAAL-----LAAPPAGTHVYVCGPEGMMDAV 191

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal. Length = 211

>gnl|CDD|99789 cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 18/188 (9%)

Query: 129 KYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMK 188
                P +       +G   LL++    G  ++  A LKPG+ ++V GP+      P   
Sbjct: 40  GLERIPLSLAGVDPEEGTISLLVE--IRGPKTKLIAELKPGEKLDVMGPLGNGFEGPKKG 97

Query: 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL 248
             + ++AGG G+ P+L + + +  N +   +V++L G     +  L +  ++     P  
Sbjct: 98  GTVLLVAGGIGLAPLLPIAKKLAANGN---KVTVLAGAKKAKEEFLDEYFEL-----PAD 149

Query: 249 KVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDA-LILVCGPPGMMKHVSGEKAKDYS 307
              +T D       G +G   K T     P P +D   I+V G   MMK V     +   
Sbjct: 150 VEIWTTD------DGELGLEGKVT-DSDKPIPLEDVDRIIVAGSDIMMKAVVEALDEWLQ 202

Query: 308 QGELSGIL 315
             + S   
Sbjct: 203 LIKASVSN 210

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 243

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 145 GHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEK--LRYSPNMKKHIGMIAGGTGIT 201
           G  +L I+  P G  + H F +LK  D++ ++GP+    LR   +  K I ++A GTG  
Sbjct: 160 GPLELHIRHMPGGVFTDHVFGALKERDILRIEGPLGTFFLREDSD--KPIVLLASGTGFA 217

Query: 202 PMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTV---DNPT 258
           P+  ++E +         V+L +G   P+D+ L    +  A   PN + +  V       
Sbjct: 218 PIKSIVEHLRAKGIQR-PVTLYWGARRPEDLYLSALAEQWAEELPNFR-YVPVVSDALDD 275

Query: 259 KNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGM 294
             W G  G++ +   L+  P  S    +  CG P M
Sbjct: 276 DAWTGRTGFVHQ-AVLEDFPDLS-GHQVYACGSPVM 309

Length = 339

>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 26/171 (15%)

Query: 167 KPGDVVEVKGPIEKLRYSP---NMKKHIGMIAGGTGITPMLQVIEAIL----KNPDDNTQ 219
           KPGD V++ GP  K+   P       HI M+A GTGI P    +  +             
Sbjct: 133 KPGDKVQITGPSGKVMLLPEEDPNATHI-MVATGTGIAPFRGFLRRMFMEDVPAFKFGGL 191

Query: 220 VSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYIS------KDT 272
             L  G  + D +L   + +     +P N +  Y +    KN KGG  Y+        D 
Sbjct: 192 AWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDE 251

Query: 273 ALKGLPSPSDDALILVCGPPGMM-------KHVSGEKAKDYSQGELSGILK 316
             K L    + A I  CG  GMM       K V+ E+ + + + +LSG+ K
Sbjct: 252 IFKLL---DNGAHIYFCGLKGMMPGIQDTLKRVAEERGESWEE-KLSGLKK 298

Length = 307

>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 20/156 (12%)

Query: 156 EGKMSQHFASLKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVI-EAILKN 213
           +G  S     LKPG  V++ GP+ K    P +    I M+A GTGI P    + +   + 
Sbjct: 182 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEK 241

Query: 214 PDD---NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYIS 269
            DD   N    L  G  +   +L K++ + +    P N ++ + V     N KG   YI 
Sbjct: 242 HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQ 301

Query: 270 KDTA---------LKGLPSPSDDALILVCGPPGMMK 296
              A         LK      D+  + +CG  GM K
Sbjct: 302 TRMAEYAEELWELLK-----KDNTYVYMCGLKGMEK 332

Length = 367

>gnl|CDD|236142 PRK08051, fre, FMN reductase; Validated

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 193 MIAGGTG---ITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLK 249
           +IAGGTG      +L    A+ + P+    ++L +G    D +    +L+ LA  HPNL 
Sbjct: 107 LIAGGTGFSYARSILL--TALAQGPNR--PITLYWGGREEDHLYDLDELEALALKHPNLH 162

Query: 250 VFYTVDNPTKNWKGGVGYI 268
               V+ P + W+G  G +
Sbjct: 163 FVPVVEQPEEGWQGKTGTV 181

Length = 232

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 49/191 (25%)

Query: 134 PYTPIS-DTEAKGHFDLLIKVYPEGKMSQ--HFASLKPGDVVEVK----GPIEKLRYSPN 186
           P+T  S   + +    L+I+   +G  ++    A   PG  V +K    GP     Y  +
Sbjct: 46  PFTIASSPEDEQDTLSLIIRAK-KGFTTRLLRKALKSPGGGVSLKVLVEGP-----YGSS 99

Query: 187 MK-----KHIGMIAGGTGITPMLQVIEAILKNPDDNTQ---VSLLYGNISPDDILLKQKL 238
            +      ++ ++AGG+GIT +L ++  +L+     ++   V L++  +  D   L+  L
Sbjct: 100 SEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVW--VVRDREDLEWFL 157

Query: 239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           D L A    L+V   ++           Y+++               ++VCGPPG++  V
Sbjct: 158 DELRA-AQELEVDGEIEI----------YVTR---------------VVVCGPPGLVDDV 191

Query: 299 SGEKAKDYSQG 309
               AK    G
Sbjct: 192 RNAVAKKGGTG 202

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|235575 PRK05713, PRK05713, hypothetical protein; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVV---EVKGPIEKLRYSPN- 186
           V RPY+  S        +  I     G        L+ GD++   E++G    L Y P+ 
Sbjct: 133 VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQLQVGDLLRLGELRG--GALHYDPDW 190

Query: 187 MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP 246
            ++ + ++A GTG+ P+  ++   L+       + LL+         L + L  LA  HP
Sbjct: 191 QERPLWLLAAGTGLAPLWGILREALRQ-GHQGPIRLLHLARDSAGHYLAEPLAALAGRHP 249

Query: 247 NLKV-FYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPG 293
            L V   T                   AL  L   S   + L+CG P 
Sbjct: 250 QLSVELVTAA-------------QLPAALAELRLVSRQTMALLCGSPA 284

Length = 312

>gnl|CDD|236735 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 25/206 (12%)

Query: 127 NTKYVVRPYTPISDTEAKGHF-DLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYS 184
           N+   +R YT +S T     F  L ++   +G  SQ     +K GD + +   + +    
Sbjct: 49  NSAETLRAYT-LSSTPGVSEFITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCD 107

Query: 185 PNMKKHIGMIAGGTGITPMLQVIEAILKN-PDDNTQVSLLYGNISPDDILLKQKLDILAA 243
              +    ++A G G+TP++ +   +LKN P  + QV  ++   +P D++   +   L  
Sbjct: 108 DKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQV--IFNVRTPQDVIFADEWRQLKQ 165

Query: 244 SHPNLKVFYTVDNPTKNWKGGV--GYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGE 301
            +P L +         N   G   G ++++   + +P  +    ++ CGP   M  V  E
Sbjct: 166 RYPQLNL---TLVAENNATEGFIAGRLTRELLQQAVPDLASRT-VMTCGPAPYMDWVEQE 221

Query: 302 KAKDYSQGELSGILKDLGYTEQMVYK 327
                        +K LG T    +K
Sbjct: 222 -------------VKALGVTADRFFK 234

Length = 332

>gnl|CDD|99815 cd06219, DHOD_e_trans_like1, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 33/182 (18%)

Query: 134 PYTPISDTEA-KGHFDLLIKVYPEGKMSQHFASLKPGDVVE-VKGP----IEKLRYSPNM 187
           P T I+D +  KG   ++++V   GK ++  A+L+ GD +  V GP     E   Y    
Sbjct: 45  PLT-IADWDPEKGTITIVVQVV--GKSTRELATLEEGDKIHDVVGPLGKPSEIENY---- 97

Query: 188 KKHIGMIAGGTGITPMLQVIEAILK--NPDDNTQVSLLYGNISPDDILLKQKLDILAASH 245
              +  + GG GI P+  + +A+ +  N     +V  + G  + D ++L+ +   ++   
Sbjct: 98  -GTVVFVGGGVGIAPIYPIAKALKEAGN-----RVITIIGARTKDLVILEDEFRAVS--- 148

Query: 246 PNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDD-ALILVCGPPGMMKHVSGEKAK 304
              ++  T D+ +   KG V        LK L    +   L++  GPP MMK VS E  +
Sbjct: 149 --DELIITTDDGSYGEKGFV-----TDPLKELIESGEKVDLVIAIGPPIMMKAVS-ELTR 200

Query: 305 DY 306
            Y
Sbjct: 201 PY 202

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, forming FADH2 via a semiquinone intermediate, and then transfers a hydride ion to convert NADP+ to NADPH. Length = 248

>gnl|CDD|235747 PRK06222, PRK06222, ferredoxin-NADP(+) reductase subunit alpha; Reviewed

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 35/183 (19%)

Query: 134 PYTPISDTEA-KGHFDLLIKVYPEGKMSQHFASLKPGDVVE-VKGP------IEKLRYSP 185
           P T I+D +  KG   ++ +    GK ++  A LK GD +  V GP      IEK     
Sbjct: 46  PLT-IADYDREKGTITIVFQAV--GKSTRKLAELKEGDSILDVVGPLGKPSEIEK----- 97

Query: 186 NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASH 245
                +  + GG GI P+  + +A LK  +   +V  + G  + D ++L+ ++   A S 
Sbjct: 98  --FGTVVCVGGGVGIAPVYPIAKA-LK--EAGNKVITIIGARNKDLLILEDEMK--AVSD 150

Query: 246 PNLKVFYTVDNPTKNWKGGVGYISKDT-ALKGL-PSPSDDALILVCGPPGMMKHVSGEKA 303
              +++ T D+ +   KG V      T  LK L  S      ++  GP  MMK V+ E  
Sbjct: 151 ---ELYVTTDDGSYGRKGFV------TDVLKELLESGKKVDRVVAIGPVIMMKFVA-ELT 200

Query: 304 KDY 306
           K Y
Sbjct: 201 KPY 203

Length = 281

>gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 15/164 (9%)

Query: 143 AKGHFD--LLIKV--YPEGKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKH-IGMIAG 196
           A    D  L I V  +P G  S +   LKPGD   +K  I     + P      + +I  
Sbjct: 106 ASSSSDGFLEICVRKHPGGLCSGYLHGLKPGDT--IKAFIRPNPSFRPAKGAAPVILIGA 163

Query: 197 GTGITPMLQVIEAILKNPDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVD 255
           GTGI P+   I    +       + L +G   P  D L + +LD   A    L   +T  
Sbjct: 164 GTGIAPLAGFI----RANAARRPMHLYWGGRDPASDFLYEDELDQYLADGR-LTQLHTAF 218

Query: 256 NPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS 299
           + T +    V    +  A +      D A I+VCG   M + V+
Sbjct: 219 SRTPD-GAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVA 261

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	100.0
PTZ00274	325	cytochrome b5 reductase; Provisional	100.0
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	100.0
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	100.0
PLN02252	888	nitrate reductase [NADPH]	100.0
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	100.0
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	100.0
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	100.0
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	100.0
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	100.0
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	100.0
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	100.0
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	100.0
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	100.0
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	100.0
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	100.0
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	100.0
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	100.0
PRK08051	232	fre FMN reductase; Validated	100.0
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	100.0
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	100.0
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	100.0
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	100.0
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	100.0
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	100.0
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	100.0
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	100.0
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	100.0
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	100.0
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	100.0
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	100.0
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	100.0
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	100.0
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	100.0
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	100.0
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	100.0
PRK10926	248	ferredoxin-NADP reductase; Provisional	100.0
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	100.0
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	100.0
PRK05713	312	hypothetical protein; Provisional	100.0
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	100.0
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	100.0
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	100.0
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	100.0
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	100.0
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	100.0
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	100.0
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	100.0
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	100.0
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	100.0
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	100.0
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	100.0
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	100.0
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	100.0
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	100.0
PRK05802	320	hypothetical protein; Provisional	100.0
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	100.0
cd06193	235	siderophore_interacting Siderophore interacting pr	100.0
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	100.0
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.97
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.97
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.96
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.96
PLN02292	702	ferric-chelate reductase	99.96
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.94
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.94
cd06203	398	methionine_synthase_red Human methionine synthase	99.94
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.94
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.93
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.93
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.92
PLN02631	699	ferric-chelate reductase	99.91
PRK06214	530	sulfite reductase; Provisional	99.91
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.9
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	99.9
KOG3378	385	consensus Globins and related hemoproteins [Energy	99.87
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.87
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.86
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.8
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	99.8
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	99.75
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	99.69
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.64
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	99.56
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.53
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	99.15
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.13
PF04954	119	SIP: Siderophore-interacting protein; InterPro: IP	97.7

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=100.00  E-value=1.6e-54  Score=386.11  Aligned_cols=244  Identities=50%  Similarity=0.947  Sum_probs=230.4

Q ss_pred             CCCCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCC
Q 020296           67 TDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKG  145 (328)
Q Consensus        67 ~~~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~  145 (328)
                      ...+...++..|.++++++++.+|||+..|+|.+|. +..+++..|||+.++.+..      +..+.|||||+|.+.+.|
T Consensus        40 ~~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~------g~~vvRpYTPvs~~~~~g  113 (286)
T KOG0534|consen   40 TGKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIG------GKLVVRPYTPVSLDDDKG  113 (286)
T ss_pred             cCcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCC------CcEEEEecCCccCccccc
Confidence            345566677889999999999999999999999996 8899999999999999987      788999999999998889


Q ss_pred             eEEEEEEEeCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 020296          146 HFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYG  225 (328)
Q Consensus       146 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~  225 (328)
                      +++|+||.|++|+||+||++|++||+|+++||.|+|.++++..++++|||||||||||+|++++++++++|.++|+|+|+
T Consensus       114 ~~~l~VK~Y~~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~  193 (286)
T KOG0534|consen  114 YFDLVVKVYPKGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYA  193 (286)
T ss_pred             eEEEEEEeccCCcccHHHhcCCCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEe
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             eCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCC-CcEEEEECChhhHHhhhcccc
Q 020296          226 NISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSD-DALILVCGPPGMMKHVSGEKA  303 (328)
Q Consensus       226 ~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~-~~~v~vCGP~~m~~~v~g~~~  303 (328)
                      |++++|+++++||++|+.++|. |+++++++.+...|.+..|||++++|.++++.+.+ +..++||||++|++.++    
T Consensus       194 N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~----  269 (286)
T KOG0534|consen  194 NKTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAA----  269 (286)
T ss_pred             cCCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHH----
Confidence            9999999999999999999994 99999999999999999999999999999988876 59999999999998654    


Q ss_pred             cCCCcchHHHHHhhcCCCCCCeEeC
Q 020296          304 KDYSQGELSGILKDLGYTEQMVYKF  328 (328)
Q Consensus       304 ~~~~qg~~~~~L~~~G~~~~~I~~f  328 (328)
                              ...|+.+||+++|||+|
T Consensus       270 --------~~~le~Lg~~~~~vf~f  286 (286)
T KOG0534|consen  270 --------QGNLEKLGYNEDQVFVF  286 (286)
T ss_pred             --------HHHHHhcCCChHhEEeC
Confidence                    48999999999999998

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=100.00  E-value=1.1e-48  Score=361.02  Aligned_cols=253  Identities=35%  Similarity=0.666  Sum_probs=220.0

Q ss_pred             CCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           73 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        73 l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      +.++.|.+++|++++.+++|++.|+|++|......+.||||+.+.++...+   .+....|+|||+|.|.+.+.++|+||
T Consensus        47 ~~~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~---~~~~~~R~YSiaS~p~~~~~le~~IK  123 (325)
T PTZ00274         47 VFSQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQ---PMDQCQRFYTPVTANHTKGYFDIIVK  123 (325)
T ss_pred             cCCCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCC---CCCEEEEeeecCCCCCCCCeEEEEEE
Confidence            337889999999999999999999999876456789999999987753210   13457899999999987899999999


Q ss_pred             EeCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCC-----CCCCeEEEEEeeC
Q 020296          153 VYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP-----DDNTQVSLLYGNI  227 (328)
Q Consensus       153 ~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~-----~~~~~i~L~~~~r  227 (328)
                      ++++|.+|+||+++++||+|.|+||.|.+.++++..++++||||||||||+++|+++++.++     .+.++|+|+|++|
T Consensus       124 ~~~~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R  203 (325)
T PTZ00274        124 RKKDGLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNR  203 (325)
T ss_pred             EcCCCcccHHHhcCCCCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcC
Confidence            99999999999999999999999999888777666689999999999999999999988753     2346899999999


Q ss_pred             CCchhhhHHHHHHHHHhCCC-eEEEEEEeCC--CCCCCCcccccCHHHHhhcCCCCC-CCcEEEEECChhhHHhhhcccc
Q 020296          228 SPDDILLKQKLDILAASHPN-LKVFYTVDNP--TKNWKGGVGYISKDTALKGLPSPS-DDALILVCGPPGMMKHVSGEKA  303 (328)
Q Consensus       228 ~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~~~-~~~~v~vCGP~~m~~~v~g~~~  303 (328)
                      +.+|+++.+||++|++++++ |+++++++++  ++.|.+..|+++++++.+.++.+. .+..||+|||++||+++.|.+.
T Consensus       204 ~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~Mm~av~~~~~  283 (325)
T PTZ00274        204 TERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLLNHVAGTPM  283 (325)
T ss_pred             CHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHHHHHhcCCCc
Confidence            99999999999999999995 9999999864  456888999999888777766543 2368999999999999999986


Q ss_pred             c---CCCcc--------------hHHHHHhhcCCCCCCeEeC
Q 020296          304 K---DYSQG--------------ELSGILKDLGYTEQMVYKF  328 (328)
Q Consensus       304 ~---~~~qg--------------~~~~~L~~~G~~~~~I~~f  328 (328)
                      +   ...||              +|.++|+++||++++||||
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (325)
T PTZ00274        284 GTMSSMSSGMNIQPMAPDLNNLVSLGGILGELGYDNDDVYRF  325 (325)
T ss_pred             ccccccccccccccccccccccccccchHHHhCCChhheecC
Confidence            4   56677              9999999999999999998

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=100.00  E-value=5.5e-45  Score=334.74  Aligned_cols=244  Identities=43%  Similarity=0.784  Sum_probs=208.0

Q ss_pred             CCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeE
Q 020296           69 PKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHF  147 (328)
Q Consensus        69 ~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l  147 (328)
                      ++..|+++.|.+++|++++++++++..|+|+++. .....+.||||+.++++....  +......|+|||++.+.+++.+
T Consensus        24 ~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~--~~~~~~~R~YS~~s~~~~~~~i  101 (300)
T PTZ00319         24 PPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTP--GKPETVQHSYTPISSDDEKGYV  101 (300)
T ss_pred             CccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCC--CccceEEeeeccCCCcccCCEE
Confidence            4467899999999999999999999999999864 455789999999999875310  0112578999999998888999


Q ss_pred             EEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCC---------------CCceEEEEecCccHHHH
Q 020296          148 DLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPN---------------MKKHIGMIAGGTGITPM  203 (328)
Q Consensus       148 ~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~---------------~~~~ivlIAgGtGItP~  203 (328)
                      +|+||.+         ++|.+|+||+++++||+|.++||+|.|.+..+               ..++++||||||||||+
T Consensus       102 ~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~  181 (300)
T PTZ00319        102 DFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPM  181 (300)
T ss_pred             EEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHH
Confidence            9999998         67999999999999999999999999866532               12589999999999999


Q ss_pred             HHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeC-CCCCCCCcccccCHHHHhhcCCCCC-
Q 020296          204 LQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDN-PTKNWKGGVGYISKDTALKGLPSPS-  281 (328)
Q Consensus       204 ~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~-~~~~~~g~~g~i~~~~l~~~~~~~~-  281 (328)
                      ++|+++++++..+.++++|+|++|+.+|+++.+||++++ +++++++++++++ +.+.|.+..|++++..+++.++... 
T Consensus       182 ~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~  260 (300)
T PTZ00319        182 LQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDP  260 (300)
T ss_pred             HHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccc
Confidence            999999987655557899999999999999999999954 6788999999887 4567888899999888887766432 


Q ss_pred             -----CCcEEEEECChhhHH-hhhcccccCCCcchHHHHHhhcCCCCCCeEeC
Q 020296          282 -----DDALILVCGPPGMMK-HVSGEKAKDYSQGELSGILKDLGYTEQMVYKF  328 (328)
Q Consensus       282 -----~~~~v~vCGP~~m~~-~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~f  328 (328)
                           ++..||+|||++|++ ++.             +.|+++|+++++||+|
T Consensus       261 ~~~~~~~~~vyiCGp~~mv~~~~~-------------~~L~~~G~~~~~i~~~  300 (300)
T PTZ00319        261 QNSGIKKVMALMCGPPPMLQMAVK-------------PNLEKIGYTADNMFTF  300 (300)
T ss_pred             cccccCCeEEEEECCHHHHHHHHH-------------HHHHHcCCCHHHEEEC
Confidence                 347899999999999 455             8999999999999998

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=100.00  E-value=3.5e-43  Score=312.20  Aligned_cols=229  Identities=55%  Similarity=0.989  Sum_probs=203.5

Q ss_pred             EEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM  159 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~  159 (328)
                      ++|++++.+++++..|+|+.++ .....+.||||+.++++..      +....|+|||++.+.+.+.++|+||.+++|.+
T Consensus         1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~------~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~   74 (234)
T cd06183           1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDD------GEQVVRPYTPISPDDDKGYFDLLIKIYPGGKM   74 (234)
T ss_pred             CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCC------CcccccccccccCCCcCCEEEEEEEECCCCcc
Confidence            5799999999999999999886 3457899999999998764      45688999999998777899999999999999


Q ss_pred             chhhhcCCCCCEEEEEceeeccccCCCCC-ceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296          160 SQHFASLKPGDVVEVKGPIEKLRYSPNMK-KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL  238 (328)
Q Consensus       160 S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~-~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el  238 (328)
                      |+||+++++||+|.++||+|.|.+.++.. ++++||||||||||+++++++++.+..+..+|+|+|++|+.+++++.+||
T Consensus        75 s~~l~~~~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l  154 (234)
T cd06183          75 SQYLHSLKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREEL  154 (234)
T ss_pred             hhHHhcCCCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhhHHHH
Confidence            99999999999999999999998876554 89999999999999999999998764345799999999999999999999


Q ss_pred             HHHHHhC-CCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-CCCCcEEEEECChhhHH-hhhcccccCCCcchHHHHH
Q 020296          239 DILAASH-PNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-PSDDALILVCGPPGMMK-HVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       239 ~~l~~~~-~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-~~~~~~v~vCGP~~m~~-~v~g~~~~~~~qg~~~~~L  315 (328)
                      ++|.+.+ ++++++++++++++.|.+..|+++++.++..+.. +..+..+|+|||++|++ +++             +.|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~-------------~~l  221 (234)
T cd06183         155 DELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVK-------------GLL  221 (234)
T ss_pred             HHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHH-------------HHH
Confidence            9999886 4599999998888888899999998887776653 33468899999999999 998             999


Q ss_pred             hhcCCCCCCeEeC
Q 020296          316 KDLGYTEQMVYKF  328 (328)
Q Consensus       316 ~~~G~~~~~I~~f  328 (328)
                      +++|+++++||+|
T Consensus       222 ~~~G~~~~~i~~~  234 (234)
T cd06183         222 KELGYKKDNVFKF  234 (234)
T ss_pred             HHcCCCHHHEEeC
Confidence            9999999999998

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>PLN02252 nitrate reductase [NADPH]

Probab=100.00  E-value=7.5e-43  Score=356.67  Aligned_cols=240  Identities=43%  Similarity=0.766  Sum_probs=213.8

Q ss_pred             CccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEE
Q 020296           70 KIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFD  148 (328)
Q Consensus        70 ~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~  148 (328)
                      ...|++..|.+++|++++.+++++++|+|+++. ....++.+|||+++++...      +....|+|||+|.+.+.+.|+
T Consensus       626 ~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~------g~~~~R~YSpaS~~~~~g~le  699 (888)
T PLN02252        626 PVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATIN------GKLCMRAYTPTSSDDEVGHFE  699 (888)
T ss_pred             ccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecC------CeEEEeeeEecccCCCCCEEE
Confidence            467889999999999999999999999999986 4567899999999998754      556889999999998889999


Q ss_pred             EEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccC--------C--CCCceEEEEecCccHHHHHHHHHH
Q 020296          149 LLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS--------P--NMKKHIGMIAGGTGITPMLQVIEA  209 (328)
Q Consensus       149 l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~--------~--~~~~~ivlIAgGtGItP~~~ll~~  209 (328)
                      |+||.+         ++|.+|++|++|++||+|.|+||+|+|.+.        .  ...++++||||||||||+++|+++
T Consensus       700 l~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~  779 (888)
T PLN02252        700 LVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQA  779 (888)
T ss_pred             EEEEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHH
Confidence            999998         679999999999999999999999987553        1  234799999999999999999999


Q ss_pred             HHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCC-CCCCCcccccCHHHHhhcCCCCCCCcEEE
Q 020296          210 ILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPT-KNWKGGVGYISKDTALKGLPSPSDDALIL  287 (328)
Q Consensus       210 l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~-~~~~g~~g~i~~~~l~~~~~~~~~~~~v~  287 (328)
                      ++.++++.++|+|+|++|+++|+++++||++|++++|+ |+++++++++. +.|.+..|+++++++++.++....+..+|
T Consensus       780 ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vy  859 (888)
T PLN02252        780 ILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLAL  859 (888)
T ss_pred             HHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEE
Confidence            99876667899999999999999999999999999965 99999998865 77999999999988888876654567899


Q ss_pred             EECChhhHHh-hhcccccCCCcchHHHHHhhcCCCCCCeEeC
Q 020296          288 VCGPPGMMKH-VSGEKAKDYSQGELSGILKDLGYTEQMVYKF  328 (328)
Q Consensus       288 vCGP~~m~~~-v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~f  328 (328)
                      +|||++|++. +.             ..|+++|+++++||.|
T Consensus       860 iCGPp~Mi~~av~-------------~~L~~~G~~~~~I~~f  888 (888)
T PLN02252        860 MCGPPPMIEFACQ-------------PNLEKMGYDKDSILVF  888 (888)
T ss_pred             EeCCHHHHHHHHH-------------HHHHHcCCCHHHEEEC
Confidence            9999999995 65             8999999999999988

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=100.00  E-value=1.5e-42  Score=316.96  Aligned_cols=242  Identities=23%  Similarity=0.405  Sum_probs=201.1

Q ss_pred             ccCCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCC--CCC---------------------CC
Q 020296           71 IALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQ--DAE---------------------GN  127 (328)
Q Consensus        71 ~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~--~~~---------------------~~  127 (328)
                      .++. ..+.+++|++++.+++++..|+|+.+......|+||||+.++++...  ..+                     -+
T Consensus         3 ~~~~-~~~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (283)
T cd06188           3 EVLG-AKKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKH   81 (283)
T ss_pred             cccc-cceEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhccccccccc
Confidence            3444 44557999999999999999999988633468999999999986420  000                     01


Q ss_pred             CccccccccCCcCCCCCCeEEEEEEE---------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCc
Q 020296          128 TKYVVRPYTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGT  198 (328)
Q Consensus       128 ~~~~~RpYTi~s~~~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGt  198 (328)
                      +....|+|||++.|.+.+.++|+||.         +++|.+|+||+++++||+|.|.||+|.|.+.. ..++++||||||
T Consensus        82 ~~~~~R~ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~~vlIAgGt  160 (283)
T cd06188          82 DEPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD-TDREMVFIGGGA  160 (283)
T ss_pred             CCccccccCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECccccccccC-CCCcEEEEEecc
Confidence            23456999999999877999999996         56899999999999999999999999998764 457999999999


Q ss_pred             cHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCC--CCCCCcccccCHHHHhhc
Q 020296          199 GITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPT--KNWKGGVGYISKDTALKG  276 (328)
Q Consensus       199 GItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~--~~~~g~~g~i~~~~l~~~  276 (328)
                      |||||++|+++++....+..+++|+|++|+.+|+++.+||++|++++++++++++++++.  +.|.+..|++++.+++..
T Consensus       161 GItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~~  240 (283)
T cd06188         161 GMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQVLLENY  240 (283)
T ss_pred             cHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHHHHHHH
Confidence            999999999998765443478999999999999999999999999999999988888754  668888999997766655


Q ss_pred             CCCC--CCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          277 LPSP--SDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       277 ~~~~--~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      +...  ..+..||+|||++|++++.             ..|+++|+++++||.
T Consensus       241 ~~~~~~~~~~~vyiCGP~~m~~~~~-------------~~l~~~Gv~~~~i~~  280 (283)
T cd06188         241 LKKHPAPEDIEFYLCGPPPMNSAVI-------------KMLDDLGVPRENIAF  280 (283)
T ss_pred             hccCCCCCCeEEEEECCHHHHHHHH-------------HHHHHcCCCHHHeec
Confidence            4321  2357899999999999998             999999999999985

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=4.6e-42  Score=305.40  Aligned_cols=230  Identities=24%  Similarity=0.459  Sum_probs=201.7

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      |++++|++++.+++++++++|+.++.....++||||+.++++..     .+....|||||++.+.+.+.++|+||.+++|
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~-----~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G   75 (235)
T cd06217           1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAI-----DGYTAQRSYSIASSPTQRGRVELTVKRVPGG   75 (235)
T ss_pred             CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecC-----CCceeeeeecccCCCCCCCeEEEEEEEcCCC
Confidence            67899999999999999999998863247899999999999743     2445679999999988778999999999999


Q ss_pred             ccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHH
Q 020296          158 KMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ  236 (328)
Q Consensus       158 ~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~  236 (328)
                      .+|+||++ +++||.|.+.||+|.|.+.+...++++||||||||||++++++++.... +..+++++|++|+.+++++.+
T Consensus        76 ~~s~~l~~~l~~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~  154 (235)
T cd06217          76 EVSPYLHDEVKVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG-WPVPFRLLYSARTAEDVIFRD  154 (235)
T ss_pred             cchHHHHhcCCCCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhHHH
Confidence            99999985 8999999999999998876655689999999999999999999998764 347899999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEeCC-CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296          237 KLDILAASHPNLKVFYTVDNP-TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       237 el~~l~~~~~~~~v~~~~~~~-~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L  315 (328)
                      ||.++++++++++++++++++ .+.|.+..|+++++.+++..... ++..||+|||++|++++.             +.|
T Consensus       155 el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~~-~~~~v~icGp~~m~~~v~-------------~~l  220 (235)
T cd06217         155 ELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPPL-AGRRVYVCGPPAFVEAAT-------------RLL  220 (235)
T ss_pred             HHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCCc-cCCEEEEECCHHHHHHHH-------------HHH
Confidence            999999988899999888876 46678889999987777664433 358999999999999998             999


Q ss_pred             hhcCCCCCCeEe
Q 020296          316 KDLGYTEQMVYK  327 (328)
Q Consensus       316 ~~~G~~~~~I~~  327 (328)
                      +++|+++++|+.
T Consensus       221 ~~~Gv~~~~i~~  232 (235)
T cd06217         221 LELGVPRDRIRT  232 (235)
T ss_pred             HHcCCCHHHEee
Confidence            999999999974

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=100.00  E-value=8.6e-42  Score=304.38  Aligned_cols=229  Identities=22%  Similarity=0.378  Sum_probs=198.4

Q ss_pred             CCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296           76 DKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP  155 (328)
Q Consensus        76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~  155 (328)
                      .....++|++++.+++++..|+|+.+......|+||||+.++++..        ...|+|||++.+.+.+.++|+||.++
T Consensus         4 ~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--------~~~r~ySi~s~~~~~~~l~l~i~~~~   75 (238)
T cd06211           4 VKDFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--------EGTRAFSIASSPSDAGEIELHIRLVP   75 (238)
T ss_pred             ceEEeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--------CCccccccCCCCCCCCEEEEEEEECC
Confidence            3445799999999999999999998864335899999999997642        26799999999877799999999999


Q ss_pred             CCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296          156 EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL  234 (328)
Q Consensus       156 ~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~  234 (328)
                      +|.+|++|+ .+++||+|.|+||+|.|.+.++..++++||||||||||++++++++++... ..+++|+|++|+.+++++
T Consensus        76 ~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~-~~~v~l~~~~r~~~~~~~  154 (238)
T cd06211          76 GGIATTYVHKQLKEGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD-TRKITLFFGARTRAELYY  154 (238)
T ss_pred             CCcchhhHhhcCCCCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-CCcEEEEEecCChhhhcc
Confidence            999999998 799999999999999988776555899999999999999999999987643 368999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296          235 KQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS  312 (328)
Q Consensus       235 ~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~  312 (328)
                      .+||++|++++++++++.+++++  .+.|.+..|++++ .+.+.+....++..+|+|||++|++++.             
T Consensus       155 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyvCGp~~m~~~~~-------------  220 (238)
T cd06211         155 LDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHD-AAKKHFKNDFRGHKAYLCGPPPMIDACI-------------  220 (238)
T ss_pred             HHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHH-HHHHhcccccccCEEEEECCHHHHHHHH-------------
Confidence            99999999999999998888864  3568888999984 6666554222357899999999999998             


Q ss_pred             HHHhhcCCCCCCeEe
Q 020296          313 GILKDLGYTEQMVYK  327 (328)
Q Consensus       313 ~~L~~~G~~~~~I~~  327 (328)
                      ..|.++|+++++||.
T Consensus       221 ~~L~~~Gv~~~~i~~  235 (238)
T cd06211         221 KTLMQGRLFERDIYY  235 (238)
T ss_pred             HHHHHcCCCHHHccc
Confidence            999999999999984

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=6.9e-42  Score=303.47  Aligned_cols=226  Identities=23%  Similarity=0.446  Sum_probs=199.7

Q ss_pred             EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      ++|++++.+++++..|+|+.+......+.||||+.++++..      +....|+|||++.+.+.+.++|+||.+++|.+|
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~------~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s   74 (231)
T cd06215           1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEID------GETVYRAYTLSSSPSRPDSLSITVKRVPGGLVS   74 (231)
T ss_pred             CeEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecC------CCeEEEeeecccCCCCCCcEEEEEEEcCCCcch
Confidence            37999999999999999998863347899999999998754      445689999999988778899999999999999


Q ss_pred             hhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          161 QHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       161 ~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      +||+ ++++||+|.|.||+|.|.+.....++++||||||||||+++|++++.+.. ...+++|+|++|+.+++++.++|+
T Consensus        75 ~~l~~~~~~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~  153 (231)
T cd06215          75 NWLHDNLKVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR-PDADIVFIHSARSPADIIFADELE  153 (231)
T ss_pred             HHHHhcCCCCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCcEEEEEecCChhhhhHHHHHH
Confidence            9997 79999999999999999886554689999999999999999999998763 346899999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCCCCC-CCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296          240 ILAASHPNLKVFYTVDNPTKN-WKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL  318 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~~~~-~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~  318 (328)
                      +|+++++++++++++++++.. |.+..|+++.+.+++..++.. +..||+|||++|+++++             +.|+++
T Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~v~icGp~~m~~~~~-------------~~l~~~  219 (231)
T cd06215         154 ELARRHPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLK-ERTVFVCGPAGFMKAVK-------------SLLAEL  219 (231)
T ss_pred             HHHHHCCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCcc-CCeEEEECCHHHHHHHH-------------HHHHHc
Confidence            999999999999998876664 888899999878877665443 46899999999999998             999999


Q ss_pred             CCCCCCeEe
Q 020296          319 GYTEQMVYK  327 (328)
Q Consensus       319 G~~~~~I~~  327 (328)
                      |+++++||.
T Consensus       220 gv~~~~i~~  228 (231)
T cd06215         220 GFPMSRFHQ  228 (231)
T ss_pred             CCCHHHeee
Confidence            999999984

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=100.00  E-value=9.4e-42  Score=303.69  Aligned_cols=225  Identities=24%  Similarity=0.418  Sum_probs=197.4

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCC----CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPS----AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP  155 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~----~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~  155 (328)
                      +++|++++.++++++.++|+.+..    ....|+||||+.++++..        ...|+|||++.+.+.+.++|+||.++
T Consensus         3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySi~s~~~~~~~l~~~i~~~~   74 (236)
T cd06210           3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--------DTRRSYSLANTPNWDGRLEFLIRLLP   74 (236)
T ss_pred             eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--------ccceecccCCCCCCCCEEEEEEEEcC
Confidence            689999999999999999998753    357899999999997643        26799999999877789999999999


Q ss_pred             CCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296          156 EGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL  234 (328)
Q Consensus       156 ~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~  234 (328)
                      +|.+|+||++ +++||+|.|.||+|.|.+++...++++||||||||||+++|++++.... ...+++|+|++|+.+|+++
T Consensus        75 ~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~  153 (236)
T cd06210          75 GGAFSTYLETRAKVGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG-EPQEARLFFGVNTEAELFY  153 (236)
T ss_pred             CCccchhhhhCcCCCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhh
Confidence            9999999996 9999999999999999887665689999999999999999999998764 3368999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHH
Q 020296          235 KQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGI  314 (328)
Q Consensus       235 ~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~  314 (328)
                      .++|++|++++++++++++++++...|.+..|++.. .+.+.+........||+|||++|+++++             ..
T Consensus       154 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~-~l~~~l~~~~~~~~vyicGp~~m~~~~~-------------~~  219 (236)
T cd06210         154 LDELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVD-ALREDLASSDAKPDIYLCGPPGMVDAAF-------------AA  219 (236)
T ss_pred             HHHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHH-HHHHhhcccCCCcEEEEeCCHHHHHHHH-------------HH
Confidence            999999999999999999998877778888899874 4555454433357899999999999998             99


Q ss_pred             HhhcCCCCCCeEe
Q 020296          315 LKDLGYTEQMVYK  327 (328)
Q Consensus       315 L~~~G~~~~~I~~  327 (328)
                      |++.|+++++|+.
T Consensus       220 l~~~G~~~~~i~~  232 (236)
T cd06210         220 AREAGVPDEQVYL  232 (236)
T ss_pred             HHHcCCCHHHeee
Confidence            9999999999874

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=100.00  E-value=6.3e-42  Score=302.53  Aligned_cols=220  Identities=22%  Similarity=0.424  Sum_probs=195.0

Q ss_pred             EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      ++|++++.++++++.|+|+.+.  ...+.||||+.++++..         ..|||||++.+.+.+.++|+||.+++|.+|
T Consensus         1 ~~v~~~~~~t~~~~~l~l~~~~--~~~~~pGQ~v~l~~~~~---------~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s   69 (224)
T cd06189           1 CKVESIEPLNDDVYRVRLKPPA--PLDFLAGQYLDLLLDDG---------DKRPFSIASAPHEDGEIELHIRAVPGGSFS   69 (224)
T ss_pred             CEEEEEEeCCCceEEEEEecCC--CcccCCCCEEEEEcCCC---------CceeeecccCCCCCCeEEEEEEecCCCccH
Confidence            4789999999999999999874  57899999999998643         479999999987779999999999999999


Q ss_pred             hhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          161 QHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       161 ~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      ++|+ .+++||+|.|+||+|.|.+.++..++++||||||||||+++++++++... +..+++|+|++|+.+++++.+||+
T Consensus        70 ~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~~l~  148 (224)
T cd06189          70 DYVFEELKENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG-SKRPIHLYWGARTEEDLYLDELLE  148 (224)
T ss_pred             HHHHHhccCCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhccCHHHHH
Confidence            9998 59999999999999998877665789999999999999999999998764 347899999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296          240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG  319 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G  319 (328)
                      +|++++++++++.++++++++|.+..|++++.+++.. ... .+..+|+|||++|++++.             +.|.++|
T Consensus       149 ~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~~-~~~~v~vCGp~~m~~~~~-------------~~l~~~G  213 (224)
T cd06189         149 AWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDF-PDL-SDFDVYACGSPEMVYAAR-------------DDFVEKG  213 (224)
T ss_pred             HHHHhCCCeEEEEEeCCCCcCCccccccHHHHHHhhc-cCc-cccEEEEECCHHHHHHHH-------------HHHHHcC
Confidence            9999999999998988887779889999986655543 222 357899999999999998             9999999


Q ss_pred             CCCCCeEe
Q 020296          320 YTEQMVYK  327 (328)
Q Consensus       320 ~~~~~I~~  327 (328)
                      +++++||.
T Consensus       214 ~~~~~i~~  221 (224)
T cd06189         214 LPEENFFS  221 (224)
T ss_pred             CCHHHccc
Confidence            99999985

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=100.00  E-value=1.2e-41  Score=318.33  Aligned_cols=228  Identities=21%  Similarity=0.366  Sum_probs=200.5

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEE
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV  153 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~  153 (328)
                      +..+..++|++++.+++++.+++|+.+. .....|.||||+.++++..        ...|+|||++.|.+.+.++|+||.
T Consensus       103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySias~p~~~~~l~~~ik~  174 (340)
T PRK11872        103 DTLKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--------DDWRSYSFANRPNATNQLQFLIRL  174 (340)
T ss_pred             ccceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--------CceeecccCCCCCCCCeEEEEEEE
Confidence            4456689999999999999999999875 3467899999999998642        258999999998778999999999


Q ss_pred             eCCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296          154 YPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI  232 (328)
Q Consensus       154 ~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~  232 (328)
                      +++|.+|+||+ ++++||.|.|+||+|.|.+.. ..++++||||||||||+++|+++++... ..++++|+|++|+.+|+
T Consensus       175 ~~~G~~s~~L~~~l~~G~~v~i~gP~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~dl  252 (340)
T PRK11872        175 LPDGVMSNYLRERCQVGDEILFEAPLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG-CSPPVHLYYGVRHAADL  252 (340)
T ss_pred             CCCCcchhhHhhCCCCCCEEEEEcCcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC-CCCcEEEEEecCChHHh
Confidence            99999999997 699999999999999998764 3589999999999999999999998764 34689999999999999


Q ss_pred             hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296          233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS  312 (328)
Q Consensus       233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~  312 (328)
                      ++.+||++|++++++|+++.+++++++.|.+..|++++.+.+..+..  .+..||+|||++|++++.             
T Consensus       253 ~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~~--~~~~vy~CGp~~mv~~~~-------------  317 (340)
T PRK11872        253 CELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQLRD--QAFDMYLCGPPPMVEAVK-------------  317 (340)
T ss_pred             ccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccHHHHHhhcCc--CCCEEEEeCCHHHHHHHH-------------
Confidence            99999999999999999999999888889999999996555444432  246799999999999998             


Q ss_pred             HHHhhcCCCCCCeEe
Q 020296          313 GILKDLGYTEQMVYK  327 (328)
Q Consensus       313 ~~L~~~G~~~~~I~~  327 (328)
                      ..|+++|+++++||.
T Consensus       318 ~~L~~~Gv~~~~i~~  332 (340)
T PRK11872        318 QWLDEQALENYRLYY  332 (340)
T ss_pred             HHHHHcCCCHHHEEE
Confidence            999999999999984

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=100.00  E-value=2.2e-41  Score=303.34  Aligned_cols=233  Identities=22%  Similarity=0.282  Sum_probs=201.6

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      ++..|+.++|++++.+++++.+|+|+.+.. ....+.||||+.+.++.+.    ......|+|||++.+.+ +.++|.||
T Consensus         2 ~~~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~~~R~ySi~s~~~~-~~l~~~ik   76 (247)
T cd06184           2 GWRGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPG----LGYRQIRQYSLSDAPNG-DYYRISVK   76 (247)
T ss_pred             CCCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCC----CCCceeEEeEeccCCCC-CeEEEEEE
Confidence            467899999999999999999999998763 2368999999999987541    12458899999999865 59999999


Q ss_pred             EeCCCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCch
Q 020296          153 VYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDD  231 (328)
Q Consensus       153 ~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d  231 (328)
                      .+++|.+|+||++ +++||+|.|.||+|.|.++.+..++++||||||||||++++++++..+ +...+++|+|++|+.++
T Consensus        77 ~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~-~~~~~i~l~~~~r~~~~  155 (247)
T cd06184          77 REPGGLVSNYLHDNVKVGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE-GPGRPVTFIHAARNSAV  155 (247)
T ss_pred             EcCCCcchHHHHhcCCCCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc-CCCCcEEEEEEcCchhh
Confidence            9999999999997 999999999999999988765578999999999999999999999875 23478999999999999


Q ss_pred             hhhHHHHHHHHHhCCCeEEEEEEeCCCCC----CCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCC
Q 020296          232 ILLKQKLDILAASHPNLKVFYTVDNPTKN----WKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS  307 (328)
Q Consensus       232 ~~~~~el~~l~~~~~~~~v~~~~~~~~~~----~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~  307 (328)
                      ++|.++|++|++++++++++++++++...    |.+..|+++.+.+.+...  ..+..||+|||++|+++++        
T Consensus       156 ~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~v~icGp~~m~~~v~--------  225 (247)
T cd06184         156 HAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLL--PADADFYLCGPVPFMQAVR--------  225 (247)
T ss_pred             HHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHhhccC--CCCCEEEEECCHHHHHHHH--------
Confidence            99999999999988899999998876554    356789998777766433  2358999999999999998        


Q ss_pred             cchHHHHHhhcCCCCCCeEe
Q 020296          308 QGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       308 qg~~~~~L~~~G~~~~~I~~  327 (328)
                           ..|+++|+++++||.
T Consensus       226 -----~~l~~~G~~~~~i~~  240 (247)
T cd06184         226 -----EGLKALGVPAERIHY  240 (247)
T ss_pred             -----HHHHHcCCCHHHeee
Confidence                 999999999999985

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=100.00  E-value=2.1e-41  Score=300.55  Aligned_cols=225  Identities=21%  Similarity=0.389  Sum_probs=195.2

Q ss_pred             EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      ++|++++.+++++++|+|+.+......+.||||+.++++..      +....|+|||++.+. .+.++|.||.+++|.+|
T Consensus         1 l~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~~s   73 (231)
T cd06191           1 LRVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFD------GEELRRCYSLCSSPA-PDEISITVKRVPGGRVS   73 (231)
T ss_pred             CEEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecC------CeEEeeeeeccCCCC-CCeEEEEEEECCCCccc
Confidence            37899999999999999998764445789999999998754      455789999999886 68999999999999999


Q ss_pred             hhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          161 QHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       161 ~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      +||+ ++++||+|.|+||+|.|.+++...++++||||||||||+++|++++.... ...+++|+|++|+.+++++.+||+
T Consensus        74 ~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~  152 (231)
T cd06191          74 NYLREHIQPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA-PESDFTLIHSARTPADMIFAQELR  152 (231)
T ss_pred             hHHHhcCCCCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhHHHHHH
Confidence            9998 69999999999999999887766689999999999999999999998653 347899999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhh
Q 020296          240 ILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKD  317 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~  317 (328)
                      +|++++++++++++++++  ...|.+..|++..++.+...+.. .+..||+|||++|+++++             +.|++
T Consensus       153 ~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vyicGp~~mv~~~~-------------~~l~~  218 (231)
T cd06191         153 ELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPDR-LEREAFICGPAGMMDAVE-------------TALKE  218 (231)
T ss_pred             HHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHHHhCccc-cCCeEEEECCHHHHHHHH-------------HHHHH
Confidence            999988999999998864  34577778888766555544432 247899999999999998             99999


Q ss_pred             cCCCCCCeEe
Q 020296          318 LGYTEQMVYK  327 (328)
Q Consensus       318 ~G~~~~~I~~  327 (328)
                      +|+++++||.
T Consensus       219 ~G~~~~~i~~  228 (231)
T cd06191         219 LGMPPERIHT  228 (231)
T ss_pred             cCCCHHHeee
Confidence            9999999984

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=100.00  E-value=4.8e-41  Score=297.61  Aligned_cols=221  Identities=24%  Similarity=0.465  Sum_probs=192.9

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM  159 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~  159 (328)
                      +++|++++.+++++..++|+.+......|+||||+.++++..        ...|+|||++.+.+ +.++|+||.+++|.+
T Consensus         3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--------~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~   73 (228)
T cd06209           3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--------DETRSYSFSSAPGD-PRLEFLIRLLPGGAM   73 (228)
T ss_pred             eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--------CcccccccccCCCC-CeEEEEEEEcCCCcc
Confidence            589999999999999999998864457899999999997642        36799999998876 899999999999999


Q ss_pred             chhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296          160 SQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL  238 (328)
Q Consensus       160 S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el  238 (328)
                      |+||++ +++||.|.|+||+|.+.+.+. .++++||||||||||++++++++.... +..+++|+|++|+.+++++.++|
T Consensus        74 s~~l~~~l~~G~~v~v~gP~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l  151 (228)
T cd06209          74 SSYLRDRAQPGDRLTLTGPLGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVTRDADLVELDRL  151 (228)
T ss_pred             hhhHHhccCCCCEEEEECCcccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecCCHHHhccHHHH
Confidence            999997 999999999999999877644 488999999999999999999998764 45789999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296          239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL  318 (328)
Q Consensus       239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~  318 (328)
                      ++|.++++++++++++++++. |.+..|++++.+.+..+..  .+..||+|||++|+++++             +.|+++
T Consensus       152 ~~l~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~~--~~~~v~icGp~~m~~~~~-------------~~l~~~  215 (228)
T cd06209         152 EALAERLPGFSFRTVVADPDS-WHPRKGYVTDHLEAEDLND--GDVDVYLCGPPPMVDAVR-------------SWLDEQ  215 (228)
T ss_pred             HHHHHhCCCeEEEEEEcCCCc-cCCCcCCccHHHHHhhccC--CCcEEEEeCCHHHHHHHH-------------HHHHHc
Confidence            999999999999999887554 7788899986444433332  357899999999999998             999999


Q ss_pred             CCCCCCeEe
Q 020296          319 GYTEQMVYK  327 (328)
Q Consensus       319 G~~~~~I~~  327 (328)
                      |+++++||.
T Consensus       216 G~~~~~i~~  224 (228)
T cd06209         216 GIEPANFYY  224 (228)
T ss_pred             CCCHHHEee
Confidence            999999984

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=100.00  E-value=3e-41  Score=315.96  Aligned_cols=228  Identities=21%  Similarity=0.402  Sum_probs=199.7

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY  154 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~  154 (328)
                      +....+++|++++.++++++.|+|+.+......|.||||+.++++..         ..|+|||+|.+.+.+.++|+||.+
T Consensus        99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---------~~R~ySias~p~~~~~l~~~ik~~  169 (339)
T PRK07609         99 PVKKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---------KRRSYSIANAPHSGGPLELHIRHM  169 (339)
T ss_pred             cceEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---------ceeeeecCCCCCCCCEEEEEEEec
Confidence            44566899999999999999999998865567899999999997642         479999999998779999999999


Q ss_pred             CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296          155 PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL  233 (328)
Q Consensus       155 ~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~  233 (328)
                      ++|.+|+||+ ++++||+|.++||+|.|.+++...++++||||||||||+++|+++++... ..++|+|+|++|+.+|++
T Consensus       170 ~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~-~~~~i~l~~g~r~~~dl~  248 (339)
T PRK07609        170 PGGVFTDHVFGALKERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG-IQRPVTLYWGARRPEDLY  248 (339)
T ss_pred             CCCccHHHHHHhccCCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEecCChHHhc
Confidence            9999999998 79999999999999999887656689999999999999999999998753 346899999999999999


Q ss_pred             hHHHHHHHHHhCCCeEEEEEEeC--CCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchH
Q 020296          234 LKQKLDILAASHPNLKVFYTVDN--PTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGEL  311 (328)
Q Consensus       234 ~~~el~~l~~~~~~~~v~~~~~~--~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~  311 (328)
                      +.+++++|++++++|+++.++++  +++.|.+..|++++.+++. +++.. +..||+|||++|++++.            
T Consensus       249 ~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~-~~~~~-~~~vy~CGp~~m~~~~~------------  314 (339)
T PRK07609        249 LSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLED-FPDLS-GHQVYACGSPVMVYAAR------------  314 (339)
T ss_pred             cHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhh-ccccc-CCEEEEECCHHHHHHHH------------
Confidence            99999999999999999988886  3567888999998765554 33332 47899999999999998            


Q ss_pred             HHHHhhcCCCCCCeEe
Q 020296          312 SGILKDLGYTEQMVYK  327 (328)
Q Consensus       312 ~~~L~~~G~~~~~I~~  327 (328)
                       ..|.++|+++++||.
T Consensus       315 -~~l~~~G~~~~~i~~  329 (339)
T PRK07609        315 -DDFVAAGLPAEEFFA  329 (339)
T ss_pred             -HHHHHcCCCHHHeEE
Confidence             999999999999984

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=7.6e-41  Score=297.11  Aligned_cols=224  Identities=18%  Similarity=0.421  Sum_probs=195.1

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM  159 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~  159 (328)
                      +++|++++.++++++.++|+.+......+.||||+.++++..      +  ..|+|||++.|.+.+.++|+||.+++|.+
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~------~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~   73 (232)
T cd06212           2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGT------E--ETRSFSMANTPADPGRLEFIIKKYPGGLF   73 (232)
T ss_pred             ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCC------C--cccccccCCCCCCCCEEEEEEEECCCCch
Confidence            478999999999999999998764456899999999998643      2  78999999998877999999999999999


Q ss_pred             chhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296          160 SQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL  238 (328)
Q Consensus       160 S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el  238 (328)
                      |++|++ +++||+|.+.||+|.+.+.....++++||||||||||++++++++.... ...+++|+|++|+.+++++.+||
T Consensus        74 s~~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l  152 (232)
T cd06212          74 SSFLDDGLAVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-SDRPVRFFYGARTARDLFYLEEI  152 (232)
T ss_pred             hhHHhhcCCCCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-CCCcEEEEEeccchHHhccHHHH
Confidence            999995 9999999999999998876655789999999999999999999998764 34689999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEeCCC--CCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHh
Q 020296          239 DILAASHPNLKVFYTVDNPT--KNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILK  316 (328)
Q Consensus       239 ~~l~~~~~~~~v~~~~~~~~--~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~  316 (328)
                      ++|++++++++++.+++++.  ..|.+..|++++ .+.+.+.+.. +..||+|||++|++++.             ..|+
T Consensus       153 ~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~-~~~~~~~~~~-~~~v~~CGp~~~~~~v~-------------~~l~  217 (232)
T cd06212         153 AALGEKIPDFTFIPALSESPDDEGWSGETGLVTE-VVQRNEATLA-GCDVYLCGPPPMIDAAL-------------PVLE  217 (232)
T ss_pred             HHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHH-HHHhhccCcc-CCEEEEECCHHHHHHHH-------------HHHH
Confidence            99999888999888888653  457788899874 5555554433 57899999999999998             9999


Q ss_pred             hcCCCCCCeEe
Q 020296          317 DLGYTEQMVYK  327 (328)
Q Consensus       317 ~~G~~~~~I~~  327 (328)
                      ++|+++++||.
T Consensus       218 ~~G~~~~~i~~  228 (232)
T cd06212         218 MSGVPPDQIFY  228 (232)
T ss_pred             HcCCCHHHeee
Confidence            99999999984

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=2.9e-40  Score=295.41  Aligned_cols=225  Identities=22%  Similarity=0.380  Sum_probs=197.1

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEE
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKV  153 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~  153 (328)
                      ...+..++|++++.+++++.+++|+.+. ....+.||||+.+.++..      +....|+|||++.+. +.+.++|+||.
T Consensus        14 ~~~~~~~~v~~i~~~~~~~~~i~l~~~~-~~~~~~pGQ~i~l~~~~~------~~~~~r~ysi~s~~~~~~~~l~~~ik~   86 (243)
T cd06216          14 SARELRARVVAVRPETADMVTLTLRPNR-GWPGHRAGQHVRLGVEID------GVRHWRSYSLSSSPTQEDGTITLTVKA   86 (243)
T ss_pred             ccceeEEEEEEEEEcCCCcEEEEEecCC-CCCCcCCCceEEEEEEEC------CeEEEEEEeccCCCcCCCCeEEEEEEE
Confidence            3456689999999999999999999764 345789999999998754      556789999999987 67999999999


Q ss_pred             eCCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296          154 YPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI  232 (328)
Q Consensus       154 ~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~  232 (328)
                      +++|.+|.||+ ++++||+|.+.||+|.|.++.+..++++||||||||||++++++++.... +..+++|+|++|+.+++
T Consensus        87 ~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r~~~~~  165 (243)
T cd06216          87 QPDGLVSNWLVNHLAPGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTREDV  165 (243)
T ss_pred             cCCCcchhHHHhcCCCCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcCChhhh
Confidence            99999999999 59999999999999999887655789999999999999999999998764 44789999999999999


Q ss_pred             hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296          233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS  312 (328)
Q Consensus       233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~  312 (328)
                      ++.+||++|++++++++++++++++     +..|+++.+.+++..++.. +..+|+|||++|+++++             
T Consensus       166 ~~~~el~~l~~~~~~~~~~~~~s~~-----~~~g~~~~~~l~~~~~~~~-~~~vyvcGp~~m~~~~~-------------  226 (243)
T cd06216         166 IFADELRALAAQHPNLRLHLLYTRE-----ELDGRLSAAHLDAVVPDLA-DRQVYACGPPGFLDAAE-------------  226 (243)
T ss_pred             HHHHHHHHHHHhCCCeEEEEEEcCC-----ccCCCCCHHHHHHhccCcc-cCeEEEECCHHHHHHHH-------------
Confidence            9999999999888999998888764     4568898888877665443 47999999999999998             


Q ss_pred             HHHhhcCCCCCCeEe
Q 020296          313 GILKDLGYTEQMVYK  327 (328)
Q Consensus       313 ~~L~~~G~~~~~I~~  327 (328)
                      +.|+++|++ ++||.
T Consensus       227 ~~l~~~Gv~-~~i~~  240 (243)
T cd06216         227 ELLEAAGLA-DRLHT  240 (243)
T ss_pred             HHHHHCCCc-cceee
Confidence            999999999 99984

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>PRK08051 fre FMN reductase; Validated

Probab=100.00  E-value=1.3e-40  Score=295.58  Aligned_cols=223  Identities=19%  Similarity=0.289  Sum_probs=193.9

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      +.+++|++++.+++++..|+|+.+.  ...|+||||+.++++..         ..|||||+|.|.+++.++|.||..++|
T Consensus         2 ~~~~~v~~i~~~~~~~~~l~l~~~~--~~~~~pGQ~v~l~~~~~---------~~r~ySias~p~~~~~l~~~v~~~~~~   70 (232)
T PRK08051          2 TLSCKVTSVEAITDTVYRVRLVPEA--PFSFRAGQYLMVVMGEK---------DKRPFSIASTPREKGFIELHIGASELN   70 (232)
T ss_pred             eeEEEEEEEecCCCCeEEEEEecCC--CCccCCCCEEEEEcCCC---------cceeecccCCCCCCCcEEEEEEEcCCC
Confidence            4678999999999999999998663  46899999999997543         469999999987778999999999888


Q ss_pred             ccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHH
Q 020296          158 KMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ  236 (328)
Q Consensus       158 ~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~  236 (328)
                      .++.++. ++++||+|.|.||+|.+.+.++..++++||||||||||+++|++++...+ +..+++|+|++|+.+++++.+
T Consensus        71 ~~~~~~~~~l~~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~-~~~~v~l~~g~r~~~~~~~~~  149 (232)
T PRK08051         71 LYAMAVMERILKDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG-PNRPITLYWGGREEDHLYDLD  149 (232)
T ss_pred             cchHHHHHHcCCCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC-CCCcEEEEEEeccHHHhhhhH
Confidence            7777765 89999999999999998776555689999999999999999999998763 347899999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH-
Q 020296          237 KLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL-  315 (328)
Q Consensus       237 el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L-  315 (328)
                      ||++|++++++++++.+++++++.|.+..|++++.+++.. .+. .+..||+|||++|+++++             +.| 
T Consensus       150 el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~-~~~-~~~~vyicGp~~m~~~v~-------------~~l~  214 (232)
T PRK08051        150 ELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDF-GSL-AEYDIYIAGRFEMAKIAR-------------ELFC  214 (232)
T ss_pred             HHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhhc-cCc-ccCEEEEECCHHHHHHHH-------------HHHH
Confidence            9999999999999999888887889889999987655443 232 246899999999999998             899 


Q ss_pred             hhcCCCCCCeEe
Q 020296          316 KDLGYTEQMVYK  327 (328)
Q Consensus       316 ~~~G~~~~~I~~  327 (328)
                      ++.|+++++||.
T Consensus       215 ~~~G~~~~~i~~  226 (232)
T PRK08051        215 RERGAREEHLFG  226 (232)
T ss_pred             HHcCCCHHHeec
Confidence            999999999984

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=100.00  E-value=1.7e-40  Score=309.89  Aligned_cols=224  Identities=18%  Similarity=0.317  Sum_probs=193.9

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      ...++|++++.++++++.|+|+.++  ...|+||||+.++++..       ....|+|||+|.|.+.+.++|+||++++|
T Consensus         9 ~~~~~V~~i~~~t~~v~~l~l~~~~--~~~f~pGQfv~l~~~~~-------~~~~R~ySias~p~~~~~l~i~Vk~~~~G   79 (332)
T PRK10684          9 PNRMQVHSIVQETPDVWTISLICHD--FYPYRAGQYALVSIRNS-------AETLRAYTLSSTPGVSEFITLTVRRIDDG   79 (332)
T ss_pred             ceeEEEEEEEccCCCeEEEEEcCCC--CCCcCCCCEEEEEecCC-------CEeeeeecccCCCCCCCcEEEEEEEcCCC
Confidence            3478999999999999999998653  46799999999998642       24679999999998778999999999999


Q ss_pred             ccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHH
Q 020296          158 KMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ  236 (328)
Q Consensus       158 ~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~  236 (328)
                      .+|+||+ ++++||+|.+.||+|.|.++....++++||||||||||+++|+++++.+. +..+|+|+|++|+.+|++|.+
T Consensus        80 ~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~-~~~~v~l~y~~r~~~~~~~~~  158 (332)
T PRK10684         80 VGSQWLTRDVKRGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR-PQADVQVIFNVRTPQDVIFAD  158 (332)
T ss_pred             cchhHHHhcCCCCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCCEEEEEeCCChHHhhhHH
Confidence            9999997 79999999999999999887655689999999999999999999988653 347899999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEeCCCCCCCC-cccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296          237 KLDILAASHPNLKVFYTVDNPTKNWKG-GVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       237 el~~l~~~~~~~~v~~~~~~~~~~~~g-~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L  315 (328)
                      ||++|++++++++++++.+.+.  +.+ ..|+++.+.+++.+++.. +..+|+|||++||+++.             +.|
T Consensus       159 el~~l~~~~~~~~~~~~~~~~~--~~~~~~grl~~~~l~~~~~~~~-~~~vyiCGP~~m~~~v~-------------~~l  222 (332)
T PRK10684        159 EWRQLKQRYPQLNLTLVAENNA--TEGFIAGRLTRELLQQAVPDLA-SRTVMTCGPAPYMDWVE-------------QEV  222 (332)
T ss_pred             HHHHHHHHCCCeEEEEEeccCC--CCCccccccCHHHHHHhccccc-CCEEEEECCHHHHHHHH-------------HHH
Confidence            9999999999988877765432  233 579999878877666543 47899999999999998             999


Q ss_pred             hhcCCCCCCeEe
Q 020296          316 KDLGYTEQMVYK  327 (328)
Q Consensus       316 ~~~G~~~~~I~~  327 (328)
                      +++|+++++||.
T Consensus       223 ~~~Gv~~~~i~~  234 (332)
T PRK10684        223 KALGVTADRFFK  234 (332)
T ss_pred             HHcCCCHHHeEe
Confidence            999999999985

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=100.00  E-value=2e-40  Score=312.00  Aligned_cols=229  Identities=21%  Similarity=0.348  Sum_probs=196.7

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCC--CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPS--AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP  155 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~--~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~  155 (328)
                      |+.++|++++.++++++.|+|+.|..  ....|+||||+.|+++..      +....|+|||++.+. .+.++|+||.++
T Consensus         1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~------g~~~~R~ySi~s~p~-~~~l~i~vk~~~   73 (352)
T TIGR02160         1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVD------GEELRRSYSICSAPA-PGEIRVAVKKIP   73 (352)
T ss_pred             CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecC------CcEeeeeccccCCCC-CCcEEEEEEEeC
Confidence            57899999999999999999998752  346899999999998754      445789999999875 589999999999


Q ss_pred             CCccchhhh-cCCCCCEEEEEceeeccccCCCC--CceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296          156 EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNM--KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI  232 (328)
Q Consensus       156 ~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~--~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~  232 (328)
                      +|.+|+||+ ++++||+|.|.||+|.|.+++..  .++++||||||||||+++|+++++... +..+|+|+|++|+.+|+
T Consensus        74 ~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~-~~~~v~l~~~~r~~~d~  152 (352)
T TIGR02160        74 GGLFSTWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE-PRSTFTLVYGNRRTASV  152 (352)
T ss_pred             CCcchHHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC-CCceEEEEEEeCCHHHH
Confidence            999999997 89999999999999999876542  378999999999999999999988753 34789999999999999


Q ss_pred             hhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCC---CCCCcEEEEECChhhHHhhhcccccCCCc
Q 020296          233 LLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPS---PSDDALILVCGPPGMMKHVSGEKAKDYSQ  308 (328)
Q Consensus       233 ~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~---~~~~~~v~vCGP~~m~~~v~g~~~~~~~q  308 (328)
                      +|.+||++|++++++ +++++++++++..|.+..|+++...+.+.+..   ......||+|||++||++++         
T Consensus       153 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~---------  223 (352)
T TIGR02160       153 MFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAE---------  223 (352)
T ss_pred             HHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHH---------
Confidence            999999999998986 99999988877667667788876655544322   22346899999999999998         


Q ss_pred             chHHHHHhhcCCCCCCeEe
Q 020296          309 GELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       309 g~~~~~L~~~G~~~~~I~~  327 (328)
                          +.|+++|+++++||.
T Consensus       224 ----~~L~~~Gv~~~~i~~  238 (352)
T TIGR02160       224 ----QALTGLGVPAGRVHL  238 (352)
T ss_pred             ----HHHHHcCCCHHHEEE
Confidence                999999999999985

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=100.00  E-value=2.6e-40  Score=316.27  Aligned_cols=233  Identities=22%  Similarity=0.331  Sum_probs=199.3

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      ++..|++++|++++.+++++..|+|+.++ .....++||||+.++++.++    .....+|+|||++.|. ++.++|+||
T Consensus       150 ~~~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~~~R~ySias~p~-~~~l~~~Vk  224 (399)
T PRK13289        150 GWRGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEG----EEYQEIRQYSLSDAPN-GKYYRISVK  224 (399)
T ss_pred             CCCCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCC----ccccceeEEEeeeCCC-CCeEEEEEE
Confidence            45789999999999999999999999875 24468999999999987540    1222359999999886 479999999


Q ss_pred             EeCCCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCch
Q 020296          153 VYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDD  231 (328)
Q Consensus       153 ~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d  231 (328)
                      ++++|.+|.||++ +++||+|.|+||+|+|.++.+..++++||||||||||+++|+++++... +..+|+|+|++|+.+|
T Consensus       225 ~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~  303 (399)
T PRK13289        225 REAGGKVSNYLHDHVNVGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-PKRPVHFIHAARNGGV  303 (399)
T ss_pred             ECCCCeehHHHhhcCCCCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCChhh
Confidence            9999999999985 9999999999999999887666789999999999999999999998653 3479999999999999


Q ss_pred             hhhHHHHHHHHHhCCCeEEEEEEeCCCC-CCC----CcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCC
Q 020296          232 ILLKQKLDILAASHPNLKVFYTVDNPTK-NWK----GGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDY  306 (328)
Q Consensus       232 ~~~~~el~~l~~~~~~~~v~~~~~~~~~-~~~----g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~  306 (328)
                      +++.+||++|++++++++++.+++++.. .|.    +..|+++.+.+.+.++..  +..||+|||++|++++.       
T Consensus       304 ~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~~--~~~vyiCGp~~m~~~v~-------  374 (399)
T PRK13289        304 HAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPDP--DADFYFCGPVPFMQFVA-------  374 (399)
T ss_pred             chHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcccHHHHHhhCCCC--CCEEEEECCHHHHHHHH-------
Confidence            9999999999999999999998887543 222    235899987777765432  57899999999999998       


Q ss_pred             CcchHHHHHhhcCCCCCCeEe
Q 020296          307 SQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       307 ~qg~~~~~L~~~G~~~~~I~~  327 (328)
                            +.|++.|+++++||.
T Consensus       375 ------~~L~~~Gv~~~~I~~  389 (399)
T PRK13289        375 ------KQLLELGVPEERIHY  389 (399)
T ss_pred             ------HHHHHcCCCHHHeee
Confidence                  999999999999984

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=100.00  E-value=3.3e-40  Score=294.73  Aligned_cols=223  Identities=19%  Similarity=0.320  Sum_probs=190.0

Q ss_pred             EEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccch
Q 020296           82 KLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQ  161 (328)
Q Consensus        82 ~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~  161 (328)
                      +|++++.+++++..|+|+.+.  ...+.||||+.++++..     .+....|+|||++.+.+ +.++|+||.+++|.+|+
T Consensus         1 ~v~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~-----~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~~s~   72 (241)
T cd06195           1 TVLKRRDWTDDLFSFRVTRDI--PFRFQAGQFTKLGLPND-----DGKLVRRAYSIASAPYE-ENLEFYIILVPDGPLTP   72 (241)
T ss_pred             CeEEEEEcCCCEEEEEEcCCC--CCccCCCCeEEEeccCC-----CCCeeeecccccCCCCC-CeEEEEEEEecCCCCch
Confidence            478999999999999998764  57799999999998754     24567899999999865 89999999999999999


Q ss_pred             hhhcCCCCCEEEEE-ceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          162 HFASLKPGDVVEVK-GPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       162 ~L~~l~~Gd~v~v~-GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      ||+++++||.|.+. ||+|+|.+++. ..++++||||||||||++++++++.... +..+++|+|++|+.+|+++.+||+
T Consensus        73 ~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~  151 (241)
T cd06195          73 RLFKLKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFDKIVLVHGVRYAEELAYQDEIE  151 (241)
T ss_pred             HHhcCCCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-CCCcEEEEEccCCHHHhhhHHHHH
Confidence            99999999999999 99999987764 4689999999999999999999998542 347899999999999999999999


Q ss_pred             HHHHh-CCCeEEEEEEeCCCCCCCCcccccCHHHH----hhcCCC--CCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296          240 ILAAS-HPNLKVFYTVDNPTKNWKGGVGYISKDTA----LKGLPS--PSDDALILVCGPPGMMKHVSGEKAKDYSQGELS  312 (328)
Q Consensus       240 ~l~~~-~~~~~v~~~~~~~~~~~~g~~g~i~~~~l----~~~~~~--~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~  312 (328)
                      +|+++ +++|++++++++++..| +..|+++..+.    .+.+..  ..++..||+|||++|+++++             
T Consensus       152 ~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~-------------  217 (241)
T cd06195         152 ALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQ-------------  217 (241)
T ss_pred             HHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHH-------------
Confidence            99988 56799999998877766 67788875433    222221  22457899999999999998             


Q ss_pred             HHHhhcCCCC------CCeEe
Q 020296          313 GILKDLGYTE------QMVYK  327 (328)
Q Consensus       313 ~~L~~~G~~~------~~I~~  327 (328)
                      +.|+++|+++      .|||.
T Consensus       218 ~~l~~~G~~~~~~~~~~~~~~  238 (241)
T cd06195         218 ELLKEKGFSKNHRRKPGNITV  238 (241)
T ss_pred             HHHHHcCCCccccCCCceEEE
Confidence            9999999999      88874

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=100.00  E-value=5.8e-40  Score=293.01  Aligned_cols=229  Identities=22%  Similarity=0.382  Sum_probs=198.6

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCC--CCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSA--KLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP  155 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~--~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~  155 (328)
                      |+.++|++++.+++++..|+|+.+...  ...+.||||+.++++..      +....|+||+++.+.+ +.++|+|+.++
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~------g~~~~r~ysi~s~~~~-~~l~~~i~~~~   73 (241)
T cd06214           1 FHPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPID------GEEVRRSYSICSSPGD-DELRITVKRVP   73 (241)
T ss_pred             CceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecC------CCeeeeeeeecCCCCC-CcEEEEEEEcC
Confidence            357899999999999999999998522  25799999999999854      4567899999998765 48999999999


Q ss_pred             CCccchhhh-cCCCCCEEEEEceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296          156 EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL  233 (328)
Q Consensus       156 ~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~  233 (328)
                      +|.+|.||+ ++++|++|.+.||+|.|.+.++ ..++++||||||||||++++++++.+... ..+++|+|++|+.++++
T Consensus        74 ~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~-~~~v~l~~~~r~~~~~~  152 (241)
T cd06214          74 GGRFSNWANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP-ASRVTLVYGNRTEASVI  152 (241)
T ss_pred             CCccchhHHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC-CCcEEEEEEeCCHHHhh
Confidence            999999998 7999999999999999988765 57899999999999999999999987642 47899999999999999


Q ss_pred             hHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC---CCCCcEEEEECChhhHHhhhcccccCCCcc
Q 020296          234 LKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS---PSDDALILVCGPPGMMKHVSGEKAKDYSQG  309 (328)
Q Consensus       234 ~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~---~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg  309 (328)
                      +.+||++|++.++ ++++++++++++..|.+..|+++++.+.+.+..   +.++..||+|||+.|++.+.          
T Consensus       153 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~----------  222 (241)
T cd06214         153 FREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVE----------  222 (241)
T ss_pred             HHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHH----------
Confidence            9999999998888 499888888877778778899987776554431   23458999999999999998          


Q ss_pred             hHHHHHhhcCCCCCCeEe
Q 020296          310 ELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       310 ~~~~~L~~~G~~~~~I~~  327 (328)
                         +.|++.|+++++||.
T Consensus       223 ---~~l~~~G~~~~~i~~  237 (241)
T cd06214         223 ---AALLELGVPAERIHR  237 (241)
T ss_pred             ---HHHHHcCCCHHHeec
Confidence               999999999999984

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=100.00  E-value=4.4e-40  Score=290.56  Aligned_cols=220  Identities=25%  Similarity=0.449  Sum_probs=191.9

Q ss_pred             EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296           83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH  162 (328)
Q Consensus        83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~  162 (328)
                      |+++++++++++.++|+.+..  ..++||||+.++++..      + ...|+|||+|.+.+.+.++|+||.+++|.+|+|
T Consensus         1 v~~~~~~~~~~~~~~l~~~~~--~~~~pGq~i~l~~~~~------~-~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~   71 (224)
T cd06187           1 VVSVERLTHDIAVVRLQLDQP--LPFWAGQYVNVTVPGR------P-RTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNA   71 (224)
T ss_pred             CeeeeecCCCEEEEEEEeCCC--CCcCCCceEEEEcCCC------C-CcceeccccCCCCCCCEEEEEEEeCCCCcchHH
Confidence            578899999999999998753  6899999999998753      2 267999999998877899999999989999999


Q ss_pred             hhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHH
Q 020296          163 FAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL  241 (328)
Q Consensus       163 L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l  241 (328)
                      |++ +++||+|.|.||+|.+.+.++..++++||||||||||+++|++++..+. ...+|+|+|++|+.+++++.++|++|
T Consensus        72 l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~~~~~~~~~~~l~~~  150 (224)
T cd06187          72 LHDELKVGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGARTERDLYDLEGLLAL  150 (224)
T ss_pred             HhhcCccCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhhcChHHHHHH
Confidence            996 9999999999999998887655689999999999999999999998764 34689999999999999999999999


Q ss_pred             HHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCC
Q 020296          242 AASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYT  321 (328)
Q Consensus       242 ~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~  321 (328)
                      +++++++++++++++++..|.+..|++++.+ .+.... .++..||+|||++|+++++             +.|+++|++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~-~~~~~v~vcGp~~~~~~v~-------------~~l~~~G~~  215 (224)
T cd06187         151 AARHPWLRVVPVVSHEEGAWTGRRGLVTDVV-GRDGPD-WADHDIYICGPPAMVDATV-------------DALLARGAP  215 (224)
T ss_pred             HHhCCCeEEEEEeCCCCCccCCCcccHHHHH-HHhccc-cccCEEEEECCHHHHHHHH-------------HHHHHcCCC
Confidence            9999999998888876666888889998544 433332 2357899999999999998             999999999


Q ss_pred             CCCeEe
Q 020296          322 EQMVYK  327 (328)
Q Consensus       322 ~~~I~~  327 (328)
                      +++||.
T Consensus       216 ~~~i~~  221 (224)
T cd06187         216 PERIHF  221 (224)
T ss_pred             HHHeec
Confidence            999984

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=100.00  E-value=4e-40  Score=301.36  Aligned_cols=227  Identities=25%  Similarity=0.417  Sum_probs=187.8

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCC---CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP---SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLL  150 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~---~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~  150 (328)
                      +|.-|++++|++++++++++..|+|++..   .....++||||+.++++..      +   .||||+++.+.+.+.++|+
T Consensus         1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~---~~pySias~p~~~~~l~l~   71 (289)
T PRK08345          1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGV------G---EVPISICSSPTRKGFFELC   71 (289)
T ss_pred             CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCC------C---ceeeEecCCCCCCCEEEEE
Confidence            35668889999999999999888888743   2346799999999998643      2   3799999998777999999


Q ss_pred             EEEeCCCccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC
Q 020296          151 IKVYPEGKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP  229 (328)
Q Consensus       151 Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~  229 (328)
                      ||..  |.+|++|+++++||+|.|+||+|. |.++....++++||||||||||+++|+++++....+..+|+|+|++|+.
T Consensus        72 Ik~~--G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~  149 (289)
T PRK08345         72 IRRA--GRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYY  149 (289)
T ss_pred             EEeC--ChHHHHHHhCCCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCH
Confidence            9987  999999999999999999999998 6554444579999999999999999999988764345789999999999


Q ss_pred             chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCC------------cccccCHHHHhhcCCCCCCCcEEEEECChhhHHh
Q 020296          230 DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKG------------GVGYISKDTALKGLPSPSDDALILVCGPPGMMKH  297 (328)
Q Consensus       230 ~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g------------~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~  297 (328)
                      +|+++.+||++|++++++|+++.++++++ .|.+            ..|++.+ .+.+...++ .+..||+|||++|+++
T Consensus       150 ~d~~~~deL~~l~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~-~~~~~~~~~-~~~~vyiCGP~~m~~~  226 (289)
T PRK08345        150 EDLLFYDELIKDLAEAENVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTD-LFREANTDP-KNTYAAICGPPVMYKF  226 (289)
T ss_pred             HHhhHHHHHHHHHhcCCCEEEEEEecCCC-CCcCccccccccccccccCchhh-hhhhcCCCc-cccEEEEECCHHHHHH
Confidence            99999999999998889999999888743 3322            2456653 333333333 3478999999999999


Q ss_pred             hhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          298 VSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       298 v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      ++             +.|+++|+++++||.
T Consensus       227 v~-------------~~L~~~Gv~~~~i~~  243 (289)
T PRK08345        227 VF-------------KELINRGYRPERIYV  243 (289)
T ss_pred             HH-------------HHHHHcCCCHHHEEE
Confidence            98             999999999999985

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=100.00  E-value=2.3e-39  Score=290.71  Aligned_cols=224  Identities=22%  Similarity=0.339  Sum_probs=197.0

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY  154 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~  154 (328)
                      +..|.+++|.++++.++++..|+|+.+......|+||||+.+.++.+      +..+.|.||++|.|.+++.+.|.||+.
T Consensus         2 ~~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~------~~~~~R~YSl~s~p~~~~~~~isVk~~   75 (266)
T COG1018           2 SAGFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNG------GEPLLRAYSLSSAPDEDSLYRISVKRE   75 (266)
T ss_pred             CCceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCC------CceeeEEEEeccCCCCCceEEEEEEEe
Confidence            45789999999999999999999999874444799999999999886      558999999999999888999999999


Q ss_pred             CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296          155 PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL  233 (328)
Q Consensus       155 ~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~  233 (328)
                      ++|.+|+||| ++++||+|.+.+|.|.|.++.....+++|||||+|||||++|++++.... . .+|.|+|++|+.+++.
T Consensus        76 ~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-~-~~v~l~h~~R~~~~~a  153 (266)
T COG1018          76 DGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-P-ADVVLVHAARTPADLA  153 (266)
T ss_pred             CCCcccHHHHhcCCCCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC-C-CCEEEEEecCChhhcc
Confidence            9899999999 99999999999999999998755668999999999999999999988763 3 7899999999999999


Q ss_pred             hHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296          234 LKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS  312 (328)
Q Consensus       234 ~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~  312 (328)
                      |.+| +.+..++|+ ..+..+.+     |....|+++...+....++. . ..+|+|||.+||++++             
T Consensus       154 f~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~~-~-r~~y~CGp~~fm~av~-------------  212 (266)
T COG1018         154 FRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLSAAPDG-G-REVYLCGPGPFMQAVR-------------  212 (266)
T ss_pred             hhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhccCCCC-C-CEEEEECCHHHHHHHH-------------
Confidence            9999 999999998 66655554     33456888876666554443 2 8999999999999998             


Q ss_pred             HHHhhcCCCCCCeEe
Q 020296          313 GILKDLGYTEQMVYK  327 (328)
Q Consensus       313 ~~L~~~G~~~~~I~~  327 (328)
                      ..|+++|++.++||.
T Consensus       213 ~~l~~~g~~~~~vh~  227 (266)
T COG1018         213 LALEALGVPDDRVHL  227 (266)
T ss_pred             HHHHHcCCChhcEEE
Confidence            999999999999985

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=100.00  E-value=8.6e-40  Score=287.99  Aligned_cols=220  Identities=29%  Similarity=0.517  Sum_probs=189.3

Q ss_pred             EEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhh
Q 020296           85 DTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFA  164 (328)
Q Consensus        85 ~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~  164 (328)
                      +++.++++++.++|+.+.  ...+.||||+.++++..      +....|+|||++.+.+.+.++|+||.+++|.+|+||+
T Consensus         2 ~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~   73 (223)
T cd00322           2 ATEDVTDDVRLFRLQLPN--GFSFKPGQYVDLHLPGD------GRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLH   73 (223)
T ss_pred             ceEEecCCeEEEEEecCC--CCCcCCCcEEEEEecCC------CCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHh
Confidence            567889999999999874  57899999999999764      4568999999999877799999999999999999999


Q ss_pred             cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHh
Q 020296          165 SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS  244 (328)
Q Consensus       165 ~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~  244 (328)
                      ++++||+|.++||+|+|.+.....++++||||||||||+++|++++.... +..+++|+|++|+.+++++.+||++|++.
T Consensus        74 ~~~~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~  152 (223)
T cd00322          74 DLKPGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGARTPADLLFLDELEELAKE  152 (223)
T ss_pred             cCCCCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecCCHHHhhHHHHHHHHHHh
Confidence            99999999999999998666566789999999999999999999998763 34789999999999999999999999998


Q ss_pred             CCCeEEEEEEeCCCCCCCCcccccCH-HHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCC
Q 020296          245 HPNLKVFYTVDNPTKNWKGGVGYISK-DTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQ  323 (328)
Q Consensus       245 ~~~~~v~~~~~~~~~~~~g~~g~i~~-~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~  323 (328)
                      +++++++++++++...+.+..+++.. +.+...... ..+..+|+|||++|++.++             +.|.++|++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~yvCGp~~m~~~~~-------------~~L~~~gv~~~  218 (223)
T cd00322         153 GPNFRLVLALSRESEAKLGPGGRIDREAEILALLPD-DSGALVYICGPPAMAKAVR-------------EALVSLGVPEE  218 (223)
T ss_pred             CCCeEEEEEecCCCCCCCcccceeeHHHHHHhhccc-ccCCEEEEECCHHHHHHHH-------------HHHHHcCCCHH
Confidence            88899999998877777666666542 223332222 3468999999999999998             99999999999


Q ss_pred             CeEe
Q 020296          324 MVYK  327 (328)
Q Consensus       324 ~I~~  327 (328)
                      +||.
T Consensus       219 ~i~~  222 (223)
T cd00322         219 RIHT  222 (223)
T ss_pred             Hccc
Confidence            9873

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=100.00  E-value=1e-39  Score=289.86  Aligned_cols=221  Identities=27%  Similarity=0.451  Sum_probs=189.4

Q ss_pred             EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296           83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH  162 (328)
Q Consensus        83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~  162 (328)
                      |++++.++++++.|+|+.+.  ...|+||||+.++++..        ...|+|||++.+.+.+.++|+||.+++|.+|++
T Consensus         1 ~~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~--------~~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~   70 (232)
T cd06190           1 LVDVRELTHDVAEFRFALDG--PADFLPGQYALLALPGV--------EGARAYSMANLANASGEWEFIIKRKPGGAASNA   70 (232)
T ss_pred             CCceEEcCCCEEEEEEEcCC--ccccCCCCEEEEECCCC--------CcccCccCCcCCCCCCEEEEEEEEcCCCcchHH
Confidence            46789999999999999775  35799999999998643        267999999998777899999999999999999


Q ss_pred             hhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCC-CCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296          163 FAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP-DDNTQVSLLYGNISPDDILLKQKLDI  240 (328)
Q Consensus       163 L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~-~~~~~i~L~~~~r~~~d~~~~~el~~  240 (328)
                      |++ +++||+|.|+||+|.+.+.++..++++||||||||||+++|++++.+.+ ++..+++|+|++|+.+|+++.+||++
T Consensus        71 l~~~~~~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~  150 (232)
T cd06190          71 LFDNLEPGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSA  150 (232)
T ss_pred             HhhcCCCCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHHHHH
Confidence            985 7999999999999998776655689999999999999999999998753 23478999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEeCCCC----CCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHh
Q 020296          241 LAASHPNLKVFYTVDNPTK----NWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILK  316 (328)
Q Consensus       241 l~~~~~~~~v~~~~~~~~~----~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~  316 (328)
                      |.+.+++++++++++++..    .|.+..|+++ +.+.+.+.....+..||+|||++|++++.             ..|.
T Consensus       151 l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~-~~l~~~~~~~~~~~~vyiCGp~~m~~~v~-------------~~l~  216 (232)
T cd06190         151 LVALGARLRVTPAVSDAGSGSAAGWDGPTGFVH-EVVEATLGDRLAEFEFYFAGPPPMVDAVQ-------------RMLM  216 (232)
T ss_pred             HHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHH-HHHHhhccCCccccEEEEECCHHHHHHHH-------------HHHH
Confidence            9998888999988876543    4788889998 46666655433468999999999999997             8999


Q ss_pred             hcCCC-CCCeEe
Q 020296          317 DLGYT-EQMVYK  327 (328)
Q Consensus       317 ~~G~~-~~~I~~  327 (328)
                      +.|+. +++||.
T Consensus       217 ~~g~~~~~~i~~  228 (232)
T cd06190         217 IEGVVPFDQIHF  228 (232)
T ss_pred             HhCCCChHheee
Confidence            88865 888874

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=2.5e-39  Score=286.47  Aligned_cols=219  Identities=21%  Similarity=0.408  Sum_probs=188.4

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM  159 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~  159 (328)
                      +++|++++.+++++.+++|+.++  ...+.||||+.++++..      .  ..|+|||++.+.+.+.++|+||.+++|.+
T Consensus         2 ~~~v~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~~~l~~~~~------~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~   71 (227)
T cd06213           2 RGTIVAQERLTHDIVRLTVQLDR--PIAYKAGQYAELTLPGL------P--AARSYSFANAPQGDGQLSFHIRKVPGGAF   71 (227)
T ss_pred             eEEEEEEeecCCCEEEEEEecCC--CCCcCCCCEEEEEeCCC------C--cccccccCCCCCCCCEEEEEEEECCCCcc
Confidence            57899999999999999998764  46789999999998643      2  68999999998777899999999999999


Q ss_pred             chhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296          160 SQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL  238 (328)
Q Consensus       160 S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el  238 (328)
                      |++|+ .+++||+|.++||+|.|.+.+ ..++++||||||||||+++|++++..+. ..++|+++|++|+.+|+++.+||
T Consensus        72 s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~~l  149 (227)
T cd06213          72 SGWLFGADRTGERLTVRGPFGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG-TKRDVTLLFGARTQRDLYALDEI  149 (227)
T ss_pred             hHHHHhcCCCCCEEEEeCCCcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhccHHHH
Confidence            99996 699999999999999998764 3479999999999999999999998764 34689999999999999999999


Q ss_pred             HHHHHhC-CCeEEEEEEeCCC--CCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296          239 DILAASH-PNLKVFYTVDNPT--KNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       239 ~~l~~~~-~~~~v~~~~~~~~--~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L  315 (328)
                      +++++++ ++++++.+++++.  ..|.+..|++++ .+.+..   ..+..||+|||++|+++++             ..|
T Consensus       150 ~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~-~l~~~~---~~~~~v~~CGp~~~~~~~~-------------~~l  212 (227)
T cd06213         150 AAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTE-HIAEVL---LAATEAYLCGPPAMIDAAI-------------AVL  212 (227)
T ss_pred             HHHHHhccCCeEEEEEecCCCCCCCccCCcccHHH-HHHhhc---cCCCEEEEECCHHHHHHHH-------------HHH
Confidence            9999775 4599888887653  347788888875 444444   2357899999999999998             999


Q ss_pred             hhcCCCCCCeEe
Q 020296          316 KDLGYTEQMVYK  327 (328)
Q Consensus       316 ~~~G~~~~~I~~  327 (328)
                      .++|+++++||.
T Consensus       213 ~~~G~~~~~i~~  224 (227)
T cd06213         213 RALGIAREHIHA  224 (227)
T ss_pred             HHcCCCHHHEec
Confidence            999999999984

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=100.00  E-value=2.7e-39  Score=309.36  Aligned_cols=236  Identities=27%  Similarity=0.418  Sum_probs=197.6

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCC-----------------------CCCCCcccccc
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD-----------------------AEGNTKYVVRP  134 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~-----------------------~~~~~~~~~Rp  134 (328)
                      ..+++|++++.++++++.++|+.++.....|+||||+.++++....                       ....+....|+
T Consensus       133 ~~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~  212 (409)
T PRK05464        133 KWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRA  212 (409)
T ss_pred             EEEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeee
Confidence            3479999999999999999999986445689999999999864200                       00012357899


Q ss_pred             ccCCcCCCCCCeEEEEEEE---------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHH
Q 020296          135 YTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQ  205 (328)
Q Consensus       135 YTi~s~~~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~  205 (328)
                      |||+|.|.+.+.++|+||.         .++|.+|.||+++++||+|.|.||+|+|.+.. ..++++||||||||||+++
T Consensus       213 ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~ivlIAgGtGIaP~~s  291 (409)
T PRK05464        213 YSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRS  291 (409)
T ss_pred             eccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcEecC-CCceEEEEEeccChhHHHH
Confidence            9999999877899999997         47899999999999999999999999987763 5689999999999999999


Q ss_pred             HHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCC--CC
Q 020296          206 VIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPS--PS  281 (328)
Q Consensus       206 ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~--~~  281 (328)
                      |++++++..+...+++|+|++|+.+|+++.+||++|.+++++++++++++++  .+.|.+..|++++.+.+..+..  ..
T Consensus       292 ml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~~~~~~  371 (409)
T PRK05464        292 HIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLYENYLKDHEAP  371 (409)
T ss_pred             HHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHHHhhhhhcCCC
Confidence            9998877644457899999999999999999999999999999999888764  3568888999997655544421  12


Q ss_pred             CCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          282 DDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       282 ~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      .+..||+|||++|++++.             +.|+++|+++++||.
T Consensus       372 ~~~~vyiCGP~~m~~av~-------------~~L~~~Gv~~~~I~~  404 (409)
T PRK05464        372 EDCEYYMCGPPMMNAAVI-------------KMLKDLGVEDENILL  404 (409)
T ss_pred             CCeEEEEECCHHHHHHHH-------------HHHHHcCCCHHHEEE
Confidence            357899999999999998             999999999999984

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=100.00  E-value=7.4e-39  Score=282.45  Aligned_cols=215  Identities=24%  Similarity=0.423  Sum_probs=181.2

Q ss_pred             EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296           83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH  162 (328)
Q Consensus        83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~  162 (328)
                      |++++.+++++..++|+.++  ...|+||||+.++++..         ..|+|||+|.+.+.+.++|+||.+++|.+|+|
T Consensus         1 V~~~~~~~~~~~~i~l~~~~--~~~~~pGQ~v~l~~~~~---------~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~   69 (222)
T cd06194           1 VVSLQRLSPDVLRVRLEPDR--PLPYLPGQYVNLRRAGG---------LARSYSPTSLPDGDNELEFHIRRKPNGAFSGW   69 (222)
T ss_pred             CceeeecCCCEEEEEEecCC--CCCcCCCCEEEEEcCCC---------CceeeecCCCCCCCCEEEEEEEeccCCccchH
Confidence            56889999999999999874  46799999999998643         46999999998877899999999999999999


Q ss_pred             hhc-CCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296          163 FAS-LKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI  240 (328)
Q Consensus       163 L~~-l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~  240 (328)
                      |++ +++||.|.|.||+|.+.+.+ ...++++||||||||||+++++++++... +..+|+|+|++|+.+++++.+||++
T Consensus        70 l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~  148 (222)
T cd06194          70 LGEEARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG-HQGEIRLVHGARDPDDLYLHPALLW  148 (222)
T ss_pred             HHhccCCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-CCccEEEEEecCChhhccCHHHHHH
Confidence            997 79999999999999987654 45689999999999999999999988653 3578999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEeCCCCCCCC-cccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296          241 LAASHPNLKVFYTVDNPTKNWKG-GVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG  319 (328)
Q Consensus       241 l~~~~~~~~v~~~~~~~~~~~~g-~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G  319 (328)
                      |+++++++++++++++++..|.. ..+++     .+.+.....+..+|+|||++|+++++             +.|.+.|
T Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vyicGp~~m~~~~~-------------~~L~~~G  210 (222)
T cd06194         149 LAREHPNFRYIPCVSEGSQGDPRVRAGRI-----AAHLPPLTRDDVVYLCGAPSMVNAVR-------------RRAFLAG  210 (222)
T ss_pred             HHHHCCCeEEEEEEccCCCCCcccccchh-----hhhhccccCCCEEEEeCCHHHHHHHH-------------HHHHHcC
Confidence            99989999999988876544321 12222     22222223458999999999999998             9999999


Q ss_pred             CCCCCeEe
Q 020296          320 YTEQMVYK  327 (328)
Q Consensus       320 ~~~~~I~~  327 (328)
                      +++++||.
T Consensus       211 v~~~~i~~  218 (222)
T cd06194         211 APMKRIYA  218 (222)
T ss_pred             CCHHHeee
Confidence            99999984

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=100.00  E-value=5.7e-39  Score=340.07  Aligned_cols=241  Identities=28%  Similarity=0.572  Sum_probs=212.1

Q ss_pred             CCCCccCCCCCeEEEEEEEEE---EecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC
Q 020296           67 TDPKIALNPDKWIGFKLQDTA---RVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE  142 (328)
Q Consensus        67 ~~~~~~l~~~~~~~~~v~~~~---~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~  142 (328)
                      ++++..+++..|.+++|.+++   +.+++++.|+|++|. ...+++.|||||.++++..      +....|+|||+|.|+
T Consensus       903 ~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~------g~~~~R~YS~~S~p~  976 (1167)
T PTZ00306        903 QKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWD------GQQLIGYYSPITLPD  976 (1167)
T ss_pred             hccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeC------CeEEEEEeccCCCCC
Confidence            345678889999999999998   569999999999986 4457899999999998654      556789999999998


Q ss_pred             CCCeEEEEEEEeCCCccchhhhcCCCCCEEEEEceee----------ccccCCCCCceEEEEecCccHHHHHHHHHHHHh
Q 020296          143 AKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIE----------KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILK  212 (328)
Q Consensus       143 ~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G----------~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~  212 (328)
                      +.+.++|+|| .++|.+|+||+++++||+|.|+||+|          .|.++++..++++|||||||||||++|++++++
T Consensus       977 ~~~~i~l~Vr-~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~ 1055 (1167)
T PTZ00306        977 DLGVISILAR-GDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALK 1055 (1167)
T ss_pred             CCCeEEEEEE-cCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHh
Confidence            8899999998 56899999999999999999999877          355555566899999999999999999999987


Q ss_pred             CCC--CCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEE
Q 020296          213 NPD--DNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVC  289 (328)
Q Consensus       213 ~~~--~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vC  289 (328)
                      ++.  +.++|+|+|++|+.+|++|++||++|++++|+ |+++++++++++.|.+..|++++.++++.++.+..+..||+|
T Consensus      1056 ~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiC 1135 (1167)
T PTZ00306       1056 KPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAIC 1135 (1167)
T ss_pred             CcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEe
Confidence            652  34689999999999999999999999999996 999999998888898899999988888887665556789999


Q ss_pred             CChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          290 GPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       290 GP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      ||++|++++.             +.|+++|+++++||-
T Consensus      1136 GP~~mv~~v~-------------~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306       1136 GPPVMQRAVK-------------ADLLALGYNMELVRT 1160 (1167)
T ss_pred             CCHHHHHHHH-------------HHHHHcCCCHHHeEE
Confidence            9999999998             999999999999984

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=100.00  E-value=6.8e-39  Score=306.27  Aligned_cols=236  Identities=25%  Similarity=0.403  Sum_probs=196.8

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCC-----------------------CCCCCcccccc
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD-----------------------AEGNTKYVVRP  134 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~-----------------------~~~~~~~~~Rp  134 (328)
                      ..+++|++++.++++++.++|+.++.....|+||||+.++++....                       ....+....|+
T Consensus       129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~  208 (405)
T TIGR01941       129 KWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRA  208 (405)
T ss_pred             eeeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcccee
Confidence            3468999999999999999999886445689999999999863200                       00012346799


Q ss_pred             ccCCcCCCCCCeEEEEEEE---------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHH
Q 020296          135 YTPISDTEAKGHFDLLIKV---------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQ  205 (328)
Q Consensus       135 YTi~s~~~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~  205 (328)
                      |||+|.|.+.+.++|+||.         +++|.+|.||+++++||+|.+.||+|.|.+.+ ..++++||||||||||+++
T Consensus       209 ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~lvlIAgGtGIaP~ls  287 (405)
T TIGR01941       209 YSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRS  287 (405)
T ss_pred             ecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC-CCCCEEEEecCcCcchHHH
Confidence            9999999888999999997         57899999999999999999999999987764 4578999999999999999


Q ss_pred             HHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHhhcCCC--CC
Q 020296          206 VIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTALKGLPS--PS  281 (328)
Q Consensus       206 ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~~~~~~--~~  281 (328)
                      |+++++...+...+++|+|++|+.+|+++.+||++|++++++++++.+++++  ++.|.|..|++++.+.++.+..  ..
T Consensus       288 mi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~~~~~~  367 (405)
T TIGR01941       288 HIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYENYLKDHDAP  367 (405)
T ss_pred             HHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHHHHhhhcccCCC
Confidence            9998776433456899999999999999999999999999999999888764  3568889999986554443321  12


Q ss_pred             CCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          282 DDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       282 ~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      .+..||+|||++|++++.             +.|+++|+++++||.
T Consensus       368 ~~~~vylCGP~~m~~av~-------------~~L~~~Gv~~~~I~~  400 (405)
T TIGR01941       368 EDCEFYMCGPPMMNAAVI-------------KMLEDLGVERENILL  400 (405)
T ss_pred             CCeEEEEeCCHHHHHHHH-------------HHHHHcCCCHHHEEE
Confidence            357899999999999998             999999999999984

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=1.5e-38  Score=279.77  Aligned_cols=215  Identities=25%  Similarity=0.414  Sum_probs=181.8

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC-Cc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE-GK  158 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~-G~  158 (328)
                      .++|++++.+++++..|+|+.+.  ...|.||||+.++++..     +.....|+|||+|.+.+ +.++|+||.+++ |.
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~-----~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~~g~   73 (218)
T cd06196           2 TVTLLSIEPVTHDVKRLRFDKPE--GYDFTPGQATEVAIDKP-----GWRDEKRPFTFTSLPED-DVLEFVIKSYPDHDG   73 (218)
T ss_pred             ceEEEEEEEcCCCeEEEEEcCCC--cCCCCCCCEEEEEeeCC-----CCCccccccccccCCCC-CeEEEEEEEcCCCCc
Confidence            47899999999999999999875  36799999999998754     23457899999999864 899999999876 78


Q ss_pred             cchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296          159 MSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL  238 (328)
Q Consensus       159 ~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el  238 (328)
                      +|++|+++++||+|.++||+|+|.+.    ++++||||||||||+++|++++.... +..+++|+|++|+.+|+++.+||
T Consensus        74 ~s~~l~~l~~G~~v~i~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el  148 (218)
T cd06196          74 VTEQLGRLQPGDTLLIEDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG-KLEGNTLIFANKTEKDIILKDEL  148 (218)
T ss_pred             HhHHHHhCCCCCEEEEECCccceEec----CceEEEecCCCcChHHHHHHHHHhCC-CCceEEEEEecCCHHHHhhHHHH
Confidence            99999999999999999999998653    57899999999999999999998753 34689999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296          239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL  318 (328)
Q Consensus       239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~  318 (328)
                      ++|.    +++++++++++... ....|+++.+.+++.+...  ...||+|||++|++++.             +.|.++
T Consensus       149 ~~l~----~~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~~~--~~~vyiCGp~~m~~~~~-------------~~l~~~  208 (218)
T cd06196         149 EKML----GLKFINVVTDEKDP-GYAHGRIDKAFLKQHVTDF--NQHFYVCGPPPMEEAIN-------------GALKEL  208 (218)
T ss_pred             HHhh----cceEEEEEcCCCCC-CeeeeEECHHHHHHhcCCC--CCEEEEECCHHHHHHHH-------------HHHHHc
Confidence            9984    36677777654322 2257899987887765432  36899999999999998             999999


Q ss_pred             CCCCCCeEe
Q 020296          319 GYTEQMVYK  327 (328)
Q Consensus       319 G~~~~~I~~  327 (328)
                      |+++++||.
T Consensus       209 G~~~~~i~~  217 (218)
T cd06196         209 GVPEDSIVF  217 (218)
T ss_pred             CCCHHHEec
Confidence            999999973

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=100.00  E-value=1.3e-38  Score=286.19  Aligned_cols=218  Identities=28%  Similarity=0.548  Sum_probs=187.5

Q ss_pred             EEEEEEecCCeeEEEEEcCCC--CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           83 LQDTARVSHNSHLFRFSFDPS--AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        83 v~~~~~~s~~~~~~~~~~p~~--~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      |++++.+++++..|+|+++..  ....|.||||+.++++..      +   .||||+++.+.+++.++|.||..  |.+|
T Consensus         1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~------~---~~pySi~s~~~~~~~l~~~Ik~~--G~~S   69 (253)
T cd06221           1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGV------G---EAPISISSDPTRRGPLELTIRRV--GRVT   69 (253)
T ss_pred             CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCC------C---ccceEecCCCCCCCeEEEEEEeC--Chhh
Confidence            578899999999999998752  247899999999998754      2   38999999997779999999987  8899


Q ss_pred             hhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          161 QHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       161 ~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      ++|+++++||+|.+.||+|+ |.++....++++||||||||||+++|++++++..++..+++|+|++|+.+++++.++|+
T Consensus        70 ~~L~~l~~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~  149 (253)
T cd06221          70 EALHELKPGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELK  149 (253)
T ss_pred             HHHHcCCCCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHH
Confidence            99999999999999999998 44433356899999999999999999999997644457899999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296          240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG  319 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G  319 (328)
                      +|.++ ++++++++++++.+.|.+..|++.+ .+.+....+ .+..||+|||++|++++.             ..|++.|
T Consensus       150 ~l~~~-~~~~~~~~~s~~~~~~~~~~g~v~~-~l~~~~~~~-~~~~vyicGp~~mv~~~~-------------~~L~~~G  213 (253)
T cd06221         150 EWAKR-SDVEVILTVDRAEEGWTGNVGLVTD-LLPELTLDP-DNTVAIVCGPPIMMRFVA-------------KELLKLG  213 (253)
T ss_pred             HHHhc-CCeEEEEEeCCCCCCccCCccccch-hHHhcCCCc-CCcEEEEECCHHHHHHHH-------------HHHHHcC
Confidence            99987 7899998888877778788899885 455444333 357899999999999998             9999999


Q ss_pred             CCCCCeEe
Q 020296          320 YTEQMVYK  327 (328)
Q Consensus       320 ~~~~~I~~  327 (328)
                      +++++||.
T Consensus       214 v~~~~i~~  221 (253)
T cd06221         214 VPEEQIWV  221 (253)
T ss_pred             CCHHHEEE
Confidence            99999984

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=100.00  E-value=3.6e-38  Score=282.53  Aligned_cols=220  Identities=18%  Similarity=0.255  Sum_probs=179.2

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      .|.+++|++++.++++++.|+|+.+.   ..|+||||+.+.++..      +....|+|||+|.|.+ +.++|+||.+++
T Consensus         3 ~~~~~~V~~i~~~t~~v~~l~l~~~~---~~~~pGQfv~l~~~~~------g~~~~R~ySias~p~~-~~l~~~ik~~~~   72 (248)
T PRK10926          3 DWVTGKVTKVQNWTDALFSLTVHAPV---DPFTAGQFTKLGLEID------GERVQRAYSYVNAPDN-PDLEFYLVTVPE   72 (248)
T ss_pred             ccEEEEEEEEEEcCCCeEEEEEeCCC---CCCCCCCEEEEEEecC------CcEEEeeecccCCCCC-CeEEEEEEEeCC
Confidence            68899999999999999999998762   3689999999998654      4457899999999864 689999999999


Q ss_pred             CccchhhhcCCCCCEEEEEcee-eccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296          157 GKMSQHFASLKPGDVVEVKGPI-EKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL  234 (328)
Q Consensus       157 G~~S~~L~~l~~Gd~v~v~GP~-G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~  234 (328)
                      |.+|+||+++++||+|.+.||. |.|.++.. ..++++|||||||||||++|++++... ++..+++|+|++|+.+|++|
T Consensus        73 G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~-~~~~~v~l~~g~r~~~d~~~  151 (248)
T PRK10926         73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL-ERFKNLVLVHAARYAADLSY  151 (248)
T ss_pred             CCcChHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh-CCCCcEEEEEeCCcHHHHHH
Confidence            9999999999999999999987 55655543 347999999999999999999998754 23468999999999999999


Q ss_pred             HHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHh-----hcCC--CCCCCcEEEEECChhhHHhhhcccccCC
Q 020296          235 KQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTAL-----KGLP--SPSDDALILVCGPPGMMKHVSGEKAKDY  306 (328)
Q Consensus       235 ~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~-----~~~~--~~~~~~~v~vCGP~~m~~~v~g~~~~~~  306 (328)
                      .+||++|+++++ +++++.++++++ .+.+..|++++ ++.     +.+.  ...++..+|+|||++|++++.       
T Consensus       152 ~~el~~l~~~~~~~~~v~~~~s~~~-~~~~~~G~v~~-~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~-------  222 (248)
T PRK10926        152 LPLMQELEQRYEGKLRIQTVVSRET-APGSLTGRVPA-LIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQ-------  222 (248)
T ss_pred             HHHHHHHHHhCcCCEEEEEEECCCC-CCCCcCCccch-hhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHH-------
Confidence            999999999886 699998888743 23345788874 332     1111  112357899999999999998       


Q ss_pred             CcchHHHHHhh-cCCCC
Q 020296          307 SQGELSGILKD-LGYTE  322 (328)
Q Consensus       307 ~qg~~~~~L~~-~G~~~  322 (328)
                            +.|++ .|+++
T Consensus       223 ------~~l~~~~~~~~  233 (248)
T PRK10926        223 ------QLLKETRQMTK  233 (248)
T ss_pred             ------HHHHHhcCccc
Confidence                  77754 66754

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=100.00  E-value=3.2e-38  Score=291.05  Aligned_cols=238  Identities=20%  Similarity=0.268  Sum_probs=187.5

Q ss_pred             cCCCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCC--
Q 020296           72 ALNPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAK--  144 (328)
Q Consensus        72 ~l~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~--  144 (328)
                      .-.+.....++|++++.++     +++..|+|+.+.  .+.|.||||+.+.++.......+.....|+|||+|.|.+.  
T Consensus        18 ~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~--~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~   95 (307)
T PLN03116         18 LYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDF   95 (307)
T ss_pred             eccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC--CCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCC
Confidence            3345556689999999999     899999999764  5789999999998653200000122357999999998432  


Q ss_pred             --CeEEEEEEEe-------------CCCccchhhhcCCCCCEEEEEceeeccccCC--CCCceEEEEecCccHHHHHHHH
Q 020296          145 --GHFDLLIKVY-------------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP--NMKKHIGMIAGGTGITPMLQVI  207 (328)
Q Consensus       145 --~~l~l~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~--~~~~~ivlIAgGtGItP~~~ll  207 (328)
                        ..++|+||+.             ++|.+|+||+++++||+|.|+||+|.|.+.+  +..++++|||||||||||++|+
T Consensus        96 ~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml  175 (307)
T PLN03116         96 DGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFL  175 (307)
T ss_pred             CCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHH
Confidence              3799999987             7899999999999999999999999987643  4457999999999999999999


Q ss_pred             HHHHhCCC----CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC----C
Q 020296          208 EAILKNPD----DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL----P  278 (328)
Q Consensus       208 ~~l~~~~~----~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~----~  278 (328)
                      ++++....    ...+++|+|++|+.+|++|.+||++|+++++ +|+++.+++++...|.+..|++++ .+.+..    .
T Consensus       176 ~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~-~l~~~~~~~~~  254 (307)
T PLN03116        176 RRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQD-KIEEYSDEIFK  254 (307)
T ss_pred             HHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhh-HHHHHHHHHHh
Confidence            99875421    1357999999999999999999999999998 599999999888888888888874 443321    1


Q ss_pred             CCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCC
Q 020296          279 SPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYT  321 (328)
Q Consensus       279 ~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~  321 (328)
                      ....+..||+|||++||+++..         .+.+++++.|.+
T Consensus       255 ~~~~~~~vYiCGp~~mv~~v~~---------~L~~~~~~~g~~  288 (307)
T PLN03116        255 LLDNGAHIYFCGLKGMMPGIQD---------TLKRVAEERGES  288 (307)
T ss_pred             hhcCCcEEEEeCCHHHHHHHHH---------HHHHHHHHcCcc
Confidence            1223578999999999998862         335667777754

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=100.00  E-value=5e-38  Score=283.77  Aligned_cols=214  Identities=25%  Similarity=0.413  Sum_probs=181.5

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM  159 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~  159 (328)
                      +++|+++++++++++.|+|+.+    ..++||||+.++++..      +   .||||+++.+  ++.++|+||..  |.+
T Consensus         9 ~~~v~~i~~~t~~~~~~~l~~~----~~~~pGQfi~l~~~~~------~---~~pySi~~~~--~~~~~~~Ik~~--G~~   71 (263)
T PRK08221          9 AYKILDITKHTDIEYTFRVEVD----GPVKPGQFFEVSLPKV------G---EAPISVSDYG--DGYIDLTIRRV--GKV   71 (263)
T ss_pred             cEEEEEEeccCCcEEEEEecCC----CCCCCCceEEEEeCCC------C---cceeeccCCC--CCEEEEEEEeC--Cch
Confidence            4899999999999999999865    3789999999998754      2   3899998874  57999999987  999


Q ss_pred             chhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296          160 SQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL  238 (328)
Q Consensus       160 S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el  238 (328)
                      |++|+++++||+|.|+||+|+ |.+++...++++||||||||||+++++++++++.++.++++|+|++|+.+++++.+||
T Consensus        72 S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~el  151 (263)
T PRK08221         72 TDEIFNLKEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDL  151 (263)
T ss_pred             hhHHHhCCCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHH
Confidence            999999999999999999998 7776555689999999999999999999998765445799999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296          239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL  318 (328)
Q Consensus       239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~  318 (328)
                      ++|++++   ++++++++++..|.+..|++++.+.+..++.+ .+..||+|||++|+++++             ..|+++
T Consensus       152 ~~~~~~~---~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~-~~~~vylCGp~~mv~~~~-------------~~L~~~  214 (263)
T PRK08221        152 KRWREKI---NLILTLDEGEEGYRGNVGLVTKYIPELTLKDI-DNMQVIVVGPPIMMKFTV-------------LEFLKR  214 (263)
T ss_pred             HHHhhcC---cEEEEecCCCCCCccCccccChhhHhccCCCc-CCeEEEEECCHHHHHHHH-------------HHHHHc
Confidence            9998753   35556677777788889999964433223332 357899999999999998             899999


Q ss_pred             CCCCCCeEe
Q 020296          319 GYTEQMVYK  327 (328)
Q Consensus       319 G~~~~~I~~  327 (328)
                      |+++++||.
T Consensus       215 Gv~~~~i~~  223 (263)
T PRK08221        215 GIKEENIWV  223 (263)
T ss_pred             CCCHHHEEE
Confidence            999999984

>PRK05713 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-37  Score=288.16  Aligned_cols=213  Identities=18%  Similarity=0.277  Sum_probs=179.8

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      ..+++|++++.+++++..++|+.+.  ...|.||||+.++++.       +  ..|+|||+|.|.+.+.++|+||.+++|
T Consensus        91 ~~~~~V~~~~~~t~dv~~l~l~~~~--~~~~~~GQfv~l~~~~-------~--~~R~ySias~p~~~~~l~~~I~~~~~G  159 (312)
T PRK05713         91 GLPARVVALDWLGGDVLRLRLEPER--PLRYRAGQHLVLWTAG-------G--VARPYSLASLPGEDPFLEFHIDCSRPG  159 (312)
T ss_pred             cCCeEEEEEecCCCCEEEEEEccCC--cCCcCCCCEEEEecCC-------C--cccccccCcCCCCCCeEEEEEEEcCCC
Confidence            3469999999999999999998653  5689999999998642       2  579999999987778999999999999


Q ss_pred             ccchhhhcCCCCCEEEEEceee-ccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296          158 KMSQHFASLKPGDVVEVKGPIE-KLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK  235 (328)
Q Consensus       158 ~~S~~L~~l~~Gd~v~v~GP~G-~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~  235 (328)
                      .+|.+|+++++||+|.+.||.| .|.++++ ..++++||||||||||+++|++++++.. +..+++|+|++|+.+|+++.
T Consensus       160 ~~s~~l~~l~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~  238 (312)
T PRK05713        160 AFCDAARQLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG-HQGPIRLLHLARDSAGHYLA  238 (312)
T ss_pred             ccchhhhcCCCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEEcCchHHhhhH
Confidence            9999999999999999999997 4555543 4578999999999999999999998764 34689999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296          236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L  315 (328)
                      +||++|++++++|++++++++          +++ +.+.+.... ..+..||+|||++|++++.             +.|
T Consensus       239 ~el~~l~~~~~~~~~~~~~~~----------~~~-~~l~~~~~~-~~~~~vyiCGp~~mv~~~~-------------~~L  293 (312)
T PRK05713        239 EPLAALAGRHPQLSVELVTAA----------QLP-AALAELRLV-SRQTMALLCGSPASVERFA-------------RRL  293 (312)
T ss_pred             HHHHHHHHHCCCcEEEEEECc----------chh-hhhhhccCC-CCCeEEEEeCCHHHHHHHH-------------HHH
Confidence            999999999999998877643          222 233332222 2347899999999999998             999


Q ss_pred             hhcCCCCCCeEe
Q 020296          316 KDLGYTEQMVYK  327 (328)
Q Consensus       316 ~~~G~~~~~I~~  327 (328)
                      +++|+++++||.
T Consensus       294 ~~~Gv~~~~i~~  305 (312)
T PRK05713        294 YLAGLPRNQLLA  305 (312)
T ss_pred             HHcCCCHHHeee
Confidence            999999999984

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=100.00  E-value=8e-37  Score=275.65  Aligned_cols=216  Identities=26%  Similarity=0.426  Sum_probs=180.0

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      .| ..+|+++.+.+++++.|+|+.+    ..++||||+.++++..      +   .||||+++.+  .+.++|+||..  
T Consensus         5 ~~-~~~v~~~~~~t~~~~~~~~~~~----~~~~pGQ~v~l~~~~~------~---~~pySi~~~~--~~~l~~~Vk~~--   66 (261)
T TIGR02911         5 PF-KSEILEIIKHTDIEYTFRMSYD----GPVKPGQFFEVSLPKY------G---EAPISVSGIG--EGYIDLTIRRV--   66 (261)
T ss_pred             Cc-eEEEEEEeeccCCEEEEEcCCC----CCCCCCcEEEEEecCC------C---ccceecCCCC--CCeEEEEEEeC--
Confidence            45 4899999999999888888643    4689999999998754      2   3899998853  58999999987  


Q ss_pred             CccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296          157 GKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK  235 (328)
Q Consensus       157 G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~  235 (328)
                      |.+|.+|+++++||+|.|+||+|+ |.++++..++++||||||||||+++|+++++++.++.++++|+|++|+.+|+++.
T Consensus        67 G~~S~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~  146 (261)
T TIGR02911        67 GKVTDEVFTLKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFK  146 (261)
T ss_pred             chhhHHHHcCCCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHH
Confidence            899999999999999999999998 7766655689999999999999999999998765445789999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296          236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L  315 (328)
                      +||++|+.++ +  ++++++.+.+.|.+..|+++..+.+..+.+. .+..||+|||++|+++++             +.|
T Consensus       147 ~eL~~l~~~~-~--~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~~-~~~~v~lCGp~~mv~~~~-------------~~L  209 (261)
T TIGR02911       147 EDIAEWKGNI-N--LTLTLDEAEEDYKGNIGLVTKYIPELTLKDI-EEVQAIVVGPPIMMKFTV-------------QEL  209 (261)
T ss_pred             HHHHHHHhcC-c--EEEEEcCCCCCCcCCeeccCHhHHhccCCCc-cceEEEEECCHHHHHHHH-------------HHH
Confidence            9999998753 3  4445566666788888999865433223333 347899999999999998             899


Q ss_pred             hhcCCCCCCeEe
Q 020296          316 KDLGYTEQMVYK  327 (328)
Q Consensus       316 ~~~G~~~~~I~~  327 (328)
                      +++|+++++||.
T Consensus       210 ~~~Gv~~~~i~~  221 (261)
T TIGR02911       210 LKKGIKEENIWV  221 (261)
T ss_pred             HHcCCCHHHEEE
Confidence            999999999986

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=1.1e-36  Score=273.00  Aligned_cols=210  Identities=32%  Similarity=0.589  Sum_probs=188.4

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM  159 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~  159 (328)
                      .++|++++.+++++..++|+.+... +.++||||+.++.+..         ..||||+++.++++|.++|.|+.++.|.+
T Consensus         9 ~~~I~~~~~is~~~~~l~~~~~~~~-~~~~pGQfv~l~~~~~---------~~~P~si~~~~~~~g~~~l~i~~~~~G~~   78 (252)
T COG0543           9 SYKVVEKEEISPDTFLLRLRLPFVA-LTFKPGQFVMLRVPGG---------VRRPYSLASAPDDKGELELHIRVYEVGKV   78 (252)
T ss_pred             ccEEEEEEEecCceEEEEEeccccc-cccCCCcEEEEEeCCC---------cEEEeeeccCCCcCCcEEEEEEEEeCChH
Confidence            6899999999999999999998744 7899999999998753         88999999999988999999999999999


Q ss_pred             chhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          160 SQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       160 S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      |.+++.+++||.|.++||+|++...++..+++++||||||++|++++++++.+++ +..+|+++|++|+++|+++.+||+
T Consensus        79 T~~i~~~k~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~~~~dl~~~~el~  157 (252)
T COG0543          79 TKYIFGLKEGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGARTAKDLLLLDELE  157 (252)
T ss_pred             HHHHhhccCCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEeccChhhcccHHHHH
Confidence            9999999999999999999997776666677999999999999999999999887 678999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296          240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG  319 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G  319 (328)
                      ++..+    +++++++   ++|.|.+|+++.+.+++....  +...+|+|||+.|++++.             +.+.+.|
T Consensus       158 ~~~~~----~~~~~~~---~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~M~~~v~-------------~~~~~~g  215 (252)
T COG0543         158 ELAEK----EVHPVTD---DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPAMVKAVR-------------EKLKEYG  215 (252)
T ss_pred             HhhcC----cEEEEEC---CCCCccCcceeHHHHhhhccc--cCCEEEEECCHHHHHHHH-------------HHHHhcC
Confidence            99864    5566655   789999999977888887655  468999999999999998             8999999


Q ss_pred             CCC
Q 020296          320 YTE  322 (328)
Q Consensus       320 ~~~  322 (328)
                      +..
T Consensus       216 ~~~  218 (252)
T COG0543         216 VPI  218 (252)
T ss_pred             Cch
Confidence            743

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=100.00  E-value=1e-36  Score=278.69  Aligned_cols=221  Identities=23%  Similarity=0.331  Sum_probs=178.8

Q ss_pred             CCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC----CC
Q 020296           75 PDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA----KG  145 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~----~~  145 (328)
                      ++....++|++++.++     ++++.++|+.+.  ...|.||||+.+..+.....+ ......|+|||+|.|.+    .+
T Consensus         5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~~~~~-g~~~~~R~YSIas~p~~~~~~~~   81 (286)
T cd06208           5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG--KLPYLEGQSIGIIPPGTDAKN-GKPHKLRLYSIASSRYGDDGDGK   81 (286)
T ss_pred             CCCCeEEEEEeceeccCCCCCcceEEEEEeCCC--cccccCCceEEEECCCcchhc-CCCCCceeeEecCCccccCCCCC
Confidence            4566679999999999     699999998743  578999999999865310000 12245799999998753    47


Q ss_pred             eEEEEEEEeCC----------CccchhhhcCCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCC
Q 020296          146 HFDLLIKVYPE----------GKMSQHFASLKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNP  214 (328)
Q Consensus       146 ~l~l~Vk~~~~----------G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~  214 (328)
                      .++|+||..++          |.+|+||+++++||+|.|.||+|.|.+.+ +..++++|||||||||||++|+++++...
T Consensus        82 ~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~  161 (286)
T cd06208          82 TLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREK  161 (286)
T ss_pred             EEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh
Confidence            99999999876          99999999999999999999999977654 33578999999999999999999988651


Q ss_pred             ----CCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-----CCCCc
Q 020296          215 ----DDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-----PSDDA  284 (328)
Q Consensus       215 ----~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-----~~~~~  284 (328)
                          +...+++|+|++|+.+|+++.++|++|++++++ ++++.++++++..|.+..|++++ .+.+....     ...+.
T Consensus       162 ~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~-~i~~~~~~l~~~l~~~~~  240 (286)
T cd06208         162 HADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQD-RIAEYAEEIWNLLDKDNT  240 (286)
T ss_pred             hcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhh-HHHHhHHHHHHHHhcCCc
Confidence                234689999999999999999999999999885 99999999887888888899875 33321110     11346


Q ss_pred             EEEEECChhhHHhhh
Q 020296          285 LILVCGPPGMMKHVS  299 (328)
Q Consensus       285 ~v~vCGP~~m~~~v~  299 (328)
                      .||+|||++|++++.
T Consensus       241 ~vYiCGp~~m~~~v~  255 (286)
T cd06208         241 HVYICGLKGMEPGVD  255 (286)
T ss_pred             EEEEeCCchHHHHHH
Confidence            899999999999997

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=2.7e-36  Score=265.04  Aligned_cols=206  Identities=25%  Similarity=0.381  Sum_probs=168.5

Q ss_pred             cCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchhhh-cCCC
Q 020296           90 SHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFA-SLKP  168 (328)
Q Consensus        90 s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~  168 (328)
                      ..+++.++|+.+.. ...++||||+.++++..      +....|||||++.+.+.+.++|+||..  |.+|++|+ ++++
T Consensus         6 ~~~~~~i~l~~~~~-~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~~~~~l~l~vk~~--G~~t~~l~~~l~~   76 (216)
T cd06198           6 VRPTTTLTLEPRGP-ALGHRAGQFAFLRFDAS------GWEEPHPFTISSAPDPDGRLRFTIKAL--GDYTRRLAERLKP   76 (216)
T ss_pred             ecceEEEEEeeCCC-CCCcCCCCEEEEEeCCC------CCCCCCCcEEecCCCCCCeEEEEEEeC--ChHHHHHHHhCCC
Confidence            34677788886542 27899999999998764      456889999999988778999999987  88999999 8999


Q ss_pred             CCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCe
Q 020296          169 GDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL  248 (328)
Q Consensus       169 Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~  248 (328)
                      ||+|.|+||+|.|.+++. .++++||||||||||+++|++++.... +..+++|+|++|+.+++++.++|++|.+++ ++
T Consensus        77 G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~~  153 (216)
T cd06198          77 GTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCVRDPEDAVFLDELRALAAAA-GV  153 (216)
T ss_pred             CCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-CCceEEEEEEECCHHHhhhHHHHHHHHHhc-Ce
Confidence            999999999999988765 789999999999999999999998764 347999999999999999999999999887 78


Q ss_pred             EEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          249 KVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       249 ~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      +++++.+. ...|.+..+     .+.+..... .+..||+|||++|+++++             ..|+++|+++++||.
T Consensus       154 ~~~~~~~~-~~~~~~~~~-----~~~~~~~~~-~~~~vyicGp~~m~~~v~-------------~~l~~~Gv~~~~I~~  212 (216)
T cd06198         154 VLHVIDSP-SDGRLTLEQ-----LVRALVPDL-ADADVWFCGPPGMADALE-------------KGLRALGVPARRFHY  212 (216)
T ss_pred             EEEEEeCC-CCcccchhh-----hhhhcCCCc-CCCeEEEECcHHHHHHHH-------------HHHHHcCCChHhcch
Confidence            88775543 222322111     111222222 358999999999999998             999999999999974

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=100.00  E-value=2.5e-36  Score=281.99  Aligned_cols=219  Identities=23%  Similarity=0.319  Sum_probs=175.8

Q ss_pred             CCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCcc-ccccccCCcCCC----CC
Q 020296           75 PDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKY-VVRPYTPISDTE----AK  144 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~-~~RpYTi~s~~~----~~  144 (328)
                      +..-...+|++.+.+..     ++.+++|..+.  ...+.+|||+.|..+..   +.+++. ..|+|||+|.+.    +.
T Consensus        87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~--~~~f~~GQfv~I~~~g~---~~~g~p~~~R~YSIAS~p~~~~~~~  161 (367)
T PLN03115         87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG--EIPYREGQSIGVIPDGI---DKNGKPHKLRLYSIASSALGDFGDS  161 (367)
T ss_pred             cCCCeEEEEEeecccccCCCCCceEEEEEcCCC--CCCcCCCCEEEEEcCCc---CCCCCcCceeeeecCCCCcccCCCC
Confidence            44444689999998876     78888887553  57899999999987632   112333 579999999873    25


Q ss_pred             CeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCC
Q 020296          145 GHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNP  214 (328)
Q Consensus       145 ~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~  214 (328)
                      +.++|+||+.         ..|.+|+||+++++||+|.|.||+|+|.+.+ +...+++|||||||||||++++++++...
T Consensus       162 ~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~  241 (367)
T PLN03115        162 KTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEK  241 (367)
T ss_pred             CEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhc
Confidence            7899999975         4689999999999999999999999876544 44568999999999999999999875332


Q ss_pred             C-C---CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcCC----CC-CCCc
Q 020296          215 D-D---NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGLP----SP-SDDA  284 (328)
Q Consensus       215 ~-~---~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~----~~-~~~~  284 (328)
                      . +   ..+++|||++|+.+|++|.+||++|++++| +|++++++++++++|.|..|+++. .|.+...    .. ..+.
T Consensus       242 ~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd-~i~e~~e~l~~~l~~~~~  320 (367)
T PLN03115        242 HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQT-RMAEYAEELWELLKKDNT  320 (367)
T ss_pred             cccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehh-HHHHHHHHHHhhcccCCe
Confidence            1 1   357999999999999999999999999998 699999999998889999999975 4432211    11 2357


Q ss_pred             EEEEECChhhHHhhh
Q 020296          285 LILVCGPPGMMKHVS  299 (328)
Q Consensus       285 ~v~vCGP~~m~~~v~  299 (328)
                      .||+|||++|++.+.
T Consensus       321 ~vYiCGp~~M~~~V~  335 (367)
T PLN03115        321 YVYMCGLKGMEKGID  335 (367)
T ss_pred             EEEEeCCHHHHHHHH
Confidence            999999999999886

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=100.00  E-value=5.8e-35  Score=255.57  Aligned_cols=204  Identities=24%  Similarity=0.389  Sum_probs=166.6

Q ss_pred             EEEEEecCCeeEEEEEcCCCCC-CCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCc-cch
Q 020296           84 QDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK-MSQ  161 (328)
Q Consensus        84 ~~~~~~s~~~~~~~~~~p~~~~-~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~-~S~  161 (328)
                      ++++.+++++++++|+.+.... ..|+||||+.++++..         ..|+|||++.+.+.+.++|+||.+++|. +|.
T Consensus         1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~---------~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~   71 (211)
T cd06185           1 VRIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNG---------LVRQYSLCGDPADRDRYRIAVLREPASRGGSR   71 (211)
T ss_pred             CceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCC---------CceeeeccCCCCCCCEEEEEEEeccCCCchHH
Confidence            3678999999999999886332 4899999999997642         5799999999877799999999998765 899


Q ss_pred             hhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296          162 HFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI  240 (328)
Q Consensus       162 ~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~  240 (328)
                      ||+ .+++||+|.+.||+|.|.+.++ .++++||||||||||++++++++.+..   .+++|+|++|+.+++++.++|++
T Consensus        72 ~l~~~~~~Gd~v~i~gP~g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~  147 (211)
T cd06185          72 YMHELLRVGDELEVSAPRNLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGRSREDAAFLDELAA  147 (211)
T ss_pred             HHHhcCCCCCEEEEcCCccCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeCCCcchhHHHHHhh
Confidence            997 6899999999999999988654 579999999999999999999987642   58999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296          241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY  320 (328)
Q Consensus       241 l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~  320 (328)
                      +.  .+++++.+  +...       ++..   +.+.+....++..||+|||+.|+++++             ..|+++|+
T Consensus       148 ~~--~~~~~~~~--~~~~-------~~~~---~~~~~~~~~~~~~vyicGp~~m~~~~~-------------~~l~~~gv  200 (211)
T cd06185         148 LP--GDRVHLHF--DDEG-------GRLD---LAALLAAPPAGTHVYVCGPEGMMDAVR-------------AAAAALGW  200 (211)
T ss_pred             hc--CCcEEEEE--CCCC-------CccC---HHHHhccCCCCCEEEEECCHHHHHHHH-------------HHHHHcCC
Confidence            87  34566543  3221       2222   222222222357999999999999998             99999999


Q ss_pred             CCCCeEe
Q 020296          321 TEQMVYK  327 (328)
Q Consensus       321 ~~~~I~~  327 (328)
                      ++++||.
T Consensus       201 ~~~~i~~  207 (211)
T cd06185         201 PEARLHF  207 (211)
T ss_pred             ChhheEe
Confidence            9999984

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=1.3e-34  Score=264.85  Aligned_cols=203  Identities=22%  Similarity=0.334  Sum_probs=166.1

Q ss_pred             CCCeEEEEEEEEEEec----CCeeEEEEEcCCC-----CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCC
Q 020296           75 PDKWIGFKLQDTARVS----HNSHLFRFSFDPS-----AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKG  145 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s----~~~~~~~~~~p~~-----~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~  145 (328)
                      ...+.+++|++++.++    +++..|+|++++.     ....|.||||+.+..+        +....|+|||+|.+. ++
T Consensus        42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~--------g~~~~R~YSias~p~-~g  112 (289)
T cd06201          42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPP--------GSDVPRFYSLASSSS-DG  112 (289)
T ss_pred             CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecC--------CCCCCceEecCCCCC-CC
Confidence            3467789999999999    6999999998752     2577999999999743        334679999999984 58


Q ss_pred             eEEEEEEEeCCCccchhhhcCCCCCEEEEEc-eeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEE
Q 020296          146 HFDLLIKVYPEGKMSQHFASLKPGDVVEVKG-PIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY  224 (328)
Q Consensus       146 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~  224 (328)
                      .++|+||.+++|.+|+||+++++||+|.+.+ |.|.|.++ ...++++|||||||||||++|+++..    ..++++|+|
T Consensus       113 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~----~~~~v~L~~  187 (289)
T cd06201         113 FLEICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANA----ARRPMHLYW  187 (289)
T ss_pred             eEEEEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhh----ccCCEEEEE
Confidence            9999999999999999999999999999985 78888875 34679999999999999999999863    236899999


Q ss_pred             eeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH------HhhcCCCCCCCcEEEEECChhhHHh
Q 020296          225 GNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT------ALKGLPSPSDDALILVCGPPGMMKH  297 (328)
Q Consensus       225 ~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~------l~~~~~~~~~~~~v~vCGP~~m~~~  297 (328)
                      ++|+.+ |++|.+||++|++++++++++.+++++.     ..|+++..+      +...+.   ++..||+|||++|+++
T Consensus       188 g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~---~~~~vyiCGp~~M~~~  259 (289)
T cd06201         188 GGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIE---DGAQIMVCGSRAMAQG  259 (289)
T ss_pred             EecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-----CcccchhHHHHhHHHHHHHHH---CCcEEEEECCHHHHHH
Confidence            999985 8999999999999988888888877643     235555322      112222   3578999999999999


Q ss_pred             hh
Q 020296          298 VS  299 (328)
Q Consensus       298 v~  299 (328)
                      +.
T Consensus       260 v~  261 (289)
T cd06201         260 VA  261 (289)
T ss_pred             HH
Confidence            97

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=100.00  E-value=1.2e-34  Score=259.47  Aligned_cols=205  Identities=22%  Similarity=0.415  Sum_probs=170.8

Q ss_pred             EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296           83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH  162 (328)
Q Consensus        83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~  162 (328)
                      |++++.+++++.+|+|+.+. ....|.||||+.++++..     .+....|+||+++.+.+++.++|+||.+  |.+|+|
T Consensus         1 V~~~~~~t~~v~~l~l~~~~-~~~~~~pGQ~v~l~~~~~-----~~~~~~R~ySi~s~~~~~~~l~l~v~~~--G~~s~~   72 (246)
T cd06218           1 VLSNREIADDIYRLVLEAPE-IAAAAKPGQFVMLRVPDG-----SDPLLRRPISIHDVDPEEGTITLLYKVV--GKGTRL   72 (246)
T ss_pred             CcceeEecCCeEEEEEeCcc-hhccCCCCcEEEEEeCCC-----CCCcCCCceEeeeccCCCCEEEEEEEEE--CcchHH
Confidence            56889999999999999874 357899999999999763     2345789999999887679999999998  889999


Q ss_pred             hhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHH
Q 020296          163 FASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL  241 (328)
Q Consensus       163 L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l  241 (328)
                      |+++++||+|.|.||+|+ |.++ +..++++||||||||||+++|++++...   ..+++|+|++|+.+|+++.+||++|
T Consensus        73 l~~l~~Gd~v~i~gP~G~~~~~~-~~~~~~vlIagGtGIaP~~s~l~~~~~~---~~~v~l~~~~r~~~d~~~~~eL~~l  148 (246)
T cd06218          73 LSELKAGDELDVLGPLGNGFDLP-DDDGKVLLVGGGIGIAPLLFLAKQLAER---GIKVTVLLGFRSADDLFLVEEFEAL  148 (246)
T ss_pred             HhcCCCCCEEEEEecCCCCcCCC-CCCCcEEEEecccCHHHHHHHHHHHHhc---CCceEEEEEccchhhhhhHHHHHhh
Confidence            999999999999999997 5554 3568999999999999999999999873   2689999999999999999999998


Q ss_pred             HHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCC
Q 020296          242 AASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYT  321 (328)
Q Consensus       242 ~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~  321 (328)
                      ..     ++.++ +  ...|.+..|++++ .+.+..... .+..||+|||++|+++++             ..|++.|++
T Consensus       149 ~~-----~~~~~-~--~~~~~~~~g~v~~-~l~~~~~~~-~~~~vyiCGp~~mv~~~~-------------~~L~~~Gv~  205 (246)
T cd06218         149 GA-----EVYVA-T--DDGSAGTKGFVTD-LLKELLAEA-RPDVVYACGPEPMLKAVA-------------ELAAERGVP  205 (246)
T ss_pred             CC-----cEEEE-c--CCCCCCcceehHH-HHHHHhhcc-CCCEEEEECCHHHHHHHH-------------HHHHhcCCC
Confidence            53     23332 2  2346677888884 566555443 358999999999999998             999999998


Q ss_pred             C
Q 020296          322 E  322 (328)
Q Consensus       322 ~  322 (328)
                      .
T Consensus       206 ~  206 (246)
T cd06218         206 C  206 (246)
T ss_pred             E
Confidence            4

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=100.00  E-value=1.5e-34  Score=263.54  Aligned_cols=204  Identities=21%  Similarity=0.335  Sum_probs=169.7

Q ss_pred             EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      ++|+++++++++++.++|+.|. ....++||||+.++++..      +  ..|||||++.+.+++.++|+||..  |.+|
T Consensus         2 ~~I~~~~~~t~~~~~l~l~~~~-~~~~~~pGQfv~l~~~~~------~--~~rpySias~~~~~~~i~l~vk~~--G~~T   70 (281)
T PRK06222          2 YKILEKEELAPNVFLMEIEAPR-VAKKAKPGQFVIVRIDEK------G--ERIPLTIADYDREKGTITIVFQAV--GKST   70 (281)
T ss_pred             cEEEEEEEecCCEEEEEEeCch-hhccCCCCeEEEEEeCCC------C--CceeeEeeEEcCCCCEEEEEEEeC--CcHH
Confidence            5799999999999999998774 235689999999998643      2  368999999877778999999997  9999


Q ss_pred             hhhhcCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          161 QHFASLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       161 ~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      ++|+++++||+| .|.||+|++...+ ..++++|||||+||||++++++++.+++   .+++++|++|+.+|+++.+||+
T Consensus        71 ~~L~~l~~Gd~v~~i~GP~G~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r~~~d~~~~~el~  146 (281)
T PRK06222         71 RKLAELKEGDSILDVVGPLGKPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGARNKDLLILEDEMK  146 (281)
T ss_pred             HHHhcCCCCCEEeeEEcCCCCCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecCCHHHhhcHHHHH
Confidence            999999999999 7999999965443 3579999999999999999999988653   4799999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296          240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG  319 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G  319 (328)
                      ++..+     +++. +  ++.|.+..|++++ .+++.+++......||+|||++|++++.             +.|++.|
T Consensus       147 ~~~~~-----~~v~-~--~d~~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~~v~-------------~~l~~~g  204 (281)
T PRK06222        147 AVSDE-----LYVT-T--DDGSYGRKGFVTD-VLKELLESGKKVDRVVAIGPVIMMKFVA-------------ELTKPYG  204 (281)
T ss_pred             hhCCe-----EEEE-c--CCCCcCcccchHH-HHHHHhhcCCCCcEEEEECCHHHHHHHH-------------HHHHhcC
Confidence            88642     2222 2  3457788899984 6666655443246899999999999998             8999999


Q ss_pred             CC
Q 020296          320 YT  321 (328)
Q Consensus       320 ~~  321 (328)
                      ++
T Consensus       205 v~  206 (281)
T PRK06222        205 IK  206 (281)
T ss_pred             CC
Confidence            85

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=1.7e-34  Score=258.79  Aligned_cols=204  Identities=22%  Similarity=0.372  Sum_probs=168.6

Q ss_pred             EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      ++|++++++++++..|+|+.++ ....++||||+.++++..      +  ..|||||++.+.+.+.++|+||..  |.+|
T Consensus         1 ~~v~~~~~~t~d~~~~~l~~~~-~~~~~~pGQf~~l~~~~~------~--~~~pySi~s~~~~~~~~~~~vk~~--G~~t   69 (248)
T cd06219           1 YKILEKEELAPNVKLFEIEAPL-IAKKAKPGQFVIVRADEK------G--ERIPLTIADWDPEKGTITIVVQVV--GKST   69 (248)
T ss_pred             CEEEEEEEeCCCeEEEEEEChh-hhccCCCCcEEEEEcCCC------C--CccceEeEEEcCCCCEEEEEEEeC--CchH
Confidence            4789999999999999999874 235789999999997543      2  468999999887779999999987  8899


Q ss_pred             hhhhcCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          161 QHFASLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       161 ~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      .+|.++++||++ .++||+|.+.+.+ ..++++|||||+||||+++|++++.+..   .+++|+|++|+.+|+++.+||+
T Consensus        70 ~~l~~l~~G~~v~~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r~~~~~~~~~el~  145 (248)
T cd06219          70 RELATLEEGDKIHDVVGPLGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGARTKDLVILEDEFR  145 (248)
T ss_pred             HHHHhcCCCCEeeeeecCCCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHH
Confidence            999999999999 6999999976654 3679999999999999999999988653   5899999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296          240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG  319 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G  319 (328)
                      +|+++     +++. +  ++.|.+..|++++ .+.+.++.......||+|||++|++++.             +.|++.|
T Consensus       146 ~l~~~-----~~~~-~--~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGP~~m~~~~~-------------~~l~~~G  203 (248)
T cd06219         146 AVSDE-----LIIT-T--DDGSYGEKGFVTD-PLKELIESGEKVDLVIAIGPPIMMKAVS-------------ELTRPYG  203 (248)
T ss_pred             hhcCe-----EEEE-e--CCCCCCccccchH-HHHHHHhccCCccEEEEECCHHHHHHHH-------------HHHHHcC
Confidence            99753     2222 2  2346677788874 5555553333346899999999999998             8899999


Q ss_pred             CC
Q 020296          320 YT  321 (328)
Q Consensus       320 ~~  321 (328)
                      ++
T Consensus       204 v~  205 (248)
T cd06219         204 IP  205 (248)
T ss_pred             CC
Confidence            87

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=2.8e-34  Score=256.81  Aligned_cols=207  Identities=21%  Similarity=0.293  Sum_probs=168.0

Q ss_pred             EEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccchh
Q 020296           83 LQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH  162 (328)
Q Consensus        83 v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~~  162 (328)
                      |++++.+++++++|+|+.|.. ...++||||+.++++..      +....|||||++.+.+.++++|+||..  |.+|+|
T Consensus         1 i~~~~~~t~~~~~l~l~~~~~-~~~~~pGQ~v~l~~~~~------~~~~~rpySi~s~~~~~~~l~l~i~~~--G~~t~~   71 (243)
T cd06192           1 IVKKEQLEPNLVLLTIKAPLA-ARLFRPGQFVFLRNFES------PGLERIPLSLAGVDPEEGTISLLVEIR--GPKTKL   71 (243)
T ss_pred             CceEEEecCCEEEEEEEccch-hhcCCCCCeEEEecCCC------CCceeeeeEeeecCCCCCEEEEEEEEc--CchHHH
Confidence            468899999999999998743 46799999999998653      344789999999987789999999986  889999


Q ss_pred             hhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHH
Q 020296          163 FASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILA  242 (328)
Q Consensus       163 L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~  242 (328)
                      |+++++||+|.|+||+|++...++..++++||||||||||+++|++++.++.   .+++|+|++|+.+|+++.+||+++.
T Consensus        72 l~~~~~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~~~  148 (243)
T cd06192          72 IAELKPGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAKKAKEEFLDEYFELPA  148 (243)
T ss_pred             HHhCCCCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecCcHHHHHHHHHHHhhc
Confidence            9999999999999999987665544689999999999999999999998752   6899999999999999999998872


Q ss_pred             HhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCC
Q 020296          243 ASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE  322 (328)
Q Consensus       243 ~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~  322 (328)
                           ..++++ +  +++|.+..|++... . ...+.. ....||+|||++|+++++             +.|++.| +.
T Consensus       149 -----~~~~~~-~--~~~~~~~~g~v~~~-~-~~~~~~-~~~~v~icGp~~mv~~~~-------------~~l~~~g-~~  203 (243)
T cd06192         149 -----DVEIWT-T--DDGELGLEGKVTDS-D-KPIPLE-DVDRIIVAGSDIMMKAVV-------------EALDEWL-QL  203 (243)
T ss_pred             -----CeEEEE-e--cCCCCccceeechh-h-hhhhcc-cCCEEEEECCHHHHHHHH-------------HHHHhhc-CC
Confidence                 122232 3  24567777888643 1 222222 246899999999999998             8899988 55


Q ss_pred             CCeE
Q 020296          323 QMVY  326 (328)
Q Consensus       323 ~~I~  326 (328)
                      .+++
T Consensus       204 ~~~~  207 (243)
T cd06192         204 IKAS  207 (243)
T ss_pred             ceEE
Confidence            5554

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-34  Score=258.78  Aligned_cols=217  Identities=20%  Similarity=0.317  Sum_probs=182.9

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      .-+.++|+..++.++++..++..+..  ...+++||+.+++++..     +...-.|||||+++... .+++|.||.-  
T Consensus       214 ~~y~~~vt~~~r~~~~t~eit~~l~~--~~~~qaGQFAfLk~~~~-----~~~~~~HPFTIa~s~~~-sel~FsIK~L--  283 (438)
T COG4097         214 FPYLGKVTAPQRGNVDTLEITIGLQG--PWLYQAGQFAFLKIEIE-----EFRMRPHPFTIACSHEG-SELRFSIKAL--  283 (438)
T ss_pred             cccceEEechhhcCcchheeecccCC--cccccCCceEEEEeccc-----cccCCCCCeeeeeCCCC-ceEEEEehhh--
Confidence            34468999999999998888888774  23389999999999876     45567899999998754 5899999998  


Q ss_pred             Cccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296          157 GKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK  235 (328)
Q Consensus       157 G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~  235 (328)
                      |++|+.|+ ++++|++++|+||||+|.++.. ..+.|+||||+||||++++++.+... ++..+|+|+|++|+.++.+|.
T Consensus       284 GD~Tk~l~dnLk~G~k~~vdGPYG~F~~~~g-~~~QVWIAGGIGITPFis~l~~l~~~-~s~~~V~L~Y~~~n~e~~~y~  361 (438)
T COG4097         284 GDFTKTLKDNLKVGTKLEVDGPYGKFDFERG-LNTQVWIAGGIGITPFISMLFTLAER-KSDPPVHLFYCSRNWEEALYA  361 (438)
T ss_pred             hhhhHHHHHhccCCceEEEecCcceeecccC-CcccEEEecCcCcchHHHHHHhhccc-ccCCceEEEEEecCCchhHHH
Confidence            99999999 6999999999999999998764 34489999999999999999999874 455899999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296          236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L  315 (328)
                      +||++++++.|++.+|.. +.      +..|+++.+.+++. ++......||+|||++|+++++             ..|
T Consensus       362 ~eLr~~~qkl~~~~lHii-DS------s~~g~l~~e~ler~-~~~~~~~sv~fCGP~~m~dsL~-------------r~l  420 (438)
T COG4097         362 EELRALAQKLPNVVLHII-DS------SKDGYLDQEDLERY-PDRPRTRSVFFCGPIKMMDSLR-------------RDL  420 (438)
T ss_pred             HHHHHHHhcCCCeEEEEe-cC------CCCCccCHHHhhcc-ccccCcceEEEEcCHHHHHHHH-------------HHH
Confidence            999999999999988873 22      24588888888776 3333335899999999999998             899


Q ss_pred             hhcCCCCCCeE
Q 020296          316 KDLGYTEQMVY  326 (328)
Q Consensus       316 ~~~G~~~~~I~  326 (328)
                      +..+++-.++|
T Consensus       421 ~~~~~~i~~~h  431 (438)
T COG4097         421 KKQNVPITNFH  431 (438)
T ss_pred             HHcCCCHHHHH
Confidence            99988875544

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=5.3e-34  Score=257.92  Aligned_cols=195  Identities=20%  Similarity=0.248  Sum_probs=160.5

Q ss_pred             CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEeCC---------Cccc
Q 020296           91 HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVYPE---------GKMS  160 (328)
Q Consensus        91 ~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~~~---------G~~S  160 (328)
                      +++..++|+.+.+....|.||||+.+.++.        ....|+|||+|.|++ .+.++|+||..++         |.+|
T Consensus        15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--------~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S   86 (267)
T cd06182          15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--------PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCS   86 (267)
T ss_pred             CceEEEEEecCCCCcCccCCCCEEEEecCC--------CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchh
Confidence            468889999875356789999999998753        236799999999864 6899999999865         9999


Q ss_pred             hhhhcCCCCCEEEEEceee-ccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhH
Q 020296          161 QHFASLKPGDVVEVKGPIE-KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLK  235 (328)
Q Consensus       161 ~~L~~l~~Gd~v~v~GP~G-~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~  235 (328)
                      .+|+++++||.|.+.||+| .|.++.+..+++|||||||||||+++|+++++..   .....+++|+|++|+. +|+++.
T Consensus        87 ~~L~~lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~  166 (267)
T cd06182          87 NFLAGLQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYR  166 (267)
T ss_pred             HHHhhCCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHH
Confidence            9999999999999999999 8998776678999999999999999999999862   2344789999999999 999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH------HhhcCCCCCCCcEEEEECChh-hHHhhh
Q 020296          236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT------ALKGLPSPSDDALILVCGPPG-MMKHVS  299 (328)
Q Consensus       236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~------l~~~~~~~~~~~~v~vCGP~~-m~~~v~  299 (328)
                      ++|++|+++++++++++++++++..   ..|+++..+      +.+.+.   ++..||+|||+. |++++.
T Consensus       167 del~~~~~~~~~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~---~~~~vyvCGp~~~m~~~v~  231 (267)
T cd06182         167 EELQEALKDGALTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN---EGAHIYVCGDAKSMAKDVE  231 (267)
T ss_pred             HHHHHHHhCCCcceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh---cCCEEEEECCcccchHHHH
Confidence            9999999987789999998875432   245665322      111222   245899999999 999997

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=100.00  E-value=1.6e-33  Score=268.69  Aligned_cols=219  Identities=19%  Similarity=0.277  Sum_probs=166.6

Q ss_pred             cCCCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCC--
Q 020296           72 ALNPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAK--  144 (328)
Q Consensus        72 ~l~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~--  144 (328)
                      ...+..-..++|++++.++     +++++|+|+.+. ....+.||||+.|..+....  .......|+|||+|.+++.  
T Consensus       136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~-~~~~~~pGQfv~l~~pg~~~--~g~~~~~R~YSIas~~~~~~~  212 (411)
T TIGR03224       136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGS-HPFPVLEGQSIGILPPGTDA--SGKPHYARMYSVASPRNGERP  212 (411)
T ss_pred             cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCC-CcCCccCCcEEEEecCCcCc--CCCcCcceeeeecCCCCccCC
Confidence            3456666779999999995     499999998764 35778999999999764200  0122468999999986421  


Q ss_pred             --CeEEEEEEEeC--------CCccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhC
Q 020296          145 --GHFDLLIKVYP--------EGKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN  213 (328)
Q Consensus       145 --~~l~l~Vk~~~--------~G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~  213 (328)
                        +.++|+||+++        +|.+|+||+++++||+|.|+||+|+ |.++.....+++|||||||||||++|++++...
T Consensus       213 ~~~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~  292 (411)
T TIGR03224       213 GYNNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRR  292 (411)
T ss_pred             CCCEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHH
Confidence              47999999985        5999999999999999999999998 444433357999999999999999999998752


Q ss_pred             --CCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-----CCCCcEE
Q 020296          214 --PDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-----PSDDALI  286 (328)
Q Consensus       214 --~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-----~~~~~~v  286 (328)
                        .....+++|+|++|+.+|++|.+||++|.+.+++  +++.+++.+..   .+|++++ .+.+....     ...+..|
T Consensus       293 ~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~--~~~~~sr~~~~---~~g~V~d-~l~~~~~~v~~ll~~~~~~v  366 (411)
T TIGR03224       293 RDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFID--INFAFSRTPEQ---PKRYVQD-AIRERAADVAALLKDPNTYI  366 (411)
T ss_pred             hhcCCCCCEEEEEecCccccchHHHHHHHHHhcCce--EEEEeccCCcc---CcccHhh-HHHHhHHHHHHHHhcCCcEE
Confidence              1234789999999999999999999999877654  44566654332   4577774 33322110     1124789


Q ss_pred             EEECChhhHHhhh
Q 020296          287 LVCGPPGMMKHVS  299 (328)
Q Consensus       287 ~vCGP~~m~~~v~  299 (328)
                      |+|||++|++++.
T Consensus       367 YiCGp~~M~~~v~  379 (411)
T TIGR03224       367 YICGLKGMEEGVL  379 (411)
T ss_pred             EEECCHHHHHHHH
Confidence            9999999988876

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=2.3e-33  Score=249.26  Aligned_cols=194  Identities=22%  Similarity=0.364  Sum_probs=162.3

Q ss_pred             EEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccch
Q 020296           82 KLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQ  161 (328)
Q Consensus        82 ~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S~  161 (328)
                      +|+++++++++++.|+|+.+    ..|+||||+.++++..         ..|+||+++.|   +.++|+||..  |.+|+
T Consensus         2 ~v~~~~~~t~~~~~~~l~~~----~~~~pGQ~v~l~~~~~---------~~~~~Si~s~~---~~l~~~v~~~--G~~s~   63 (233)
T cd06220           2 TIKEVIDETPTVKTFVFDWD----FDFKPGQFVMVWVPGV---------DEIPMSLSYID---GPNSITVKKV--GEATS   63 (233)
T ss_pred             EEEEEEEEcCCEEEEEEecC----CCCCCCceEEEEeCCC---------CcceeEEecCC---CeEEEEEEec--ChHHH
Confidence            78999999999999999865    3799999999998643         24899999997   7899999987  89999


Q ss_pred             hhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHH
Q 020296          162 HFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDI  240 (328)
Q Consensus       162 ~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~  240 (328)
                      ||+++++||+|.+.||+|. |.++   .++++||||||||||+++|++++...    ++++|+|++|+.+|+++.+||++
T Consensus        64 ~L~~l~~Gd~v~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r~~~d~~~~~eL~~  136 (233)
T cd06220          64 ALHDLKEGDKLGIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGARTKEELLFLDRLRK  136 (233)
T ss_pred             HHHhcCCCCEEEEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecCChHHChhHHHHhh
Confidence            9999999999999999998 6554   57999999999999999999999865    58999999999999999999987


Q ss_pred             HHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296          241 LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY  320 (328)
Q Consensus       241 l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~  320 (328)
                      +    .++  .++..   +.|.+..|++++ .+++...  .....||+|||++|++++.             +.|++.|+
T Consensus       137 ~----~~~--~~~~~---~~~~~~~g~~~~-~l~~~~~--~~~~~vyicGp~~m~~~~~-------------~~L~~~g~  191 (233)
T cd06220         137 S----DEL--IVTTD---DGSYGFKGFVTD-LLKELDL--EEYDAIYVCGPEIMMYKVL-------------EILDERGV  191 (233)
T ss_pred             C----CcE--EEEEe---CCCCcccceehH-HHhhhcc--cCCCEEEEECCHHHHHHHH-------------HHHHhcCC
Confidence            2    222  22222   246667888874 5555442  2346899999999999998             99999999


Q ss_pred             CCCCeE
Q 020296          321 TEQMVY  326 (328)
Q Consensus       321 ~~~~I~  326 (328)
                       +.||+
T Consensus       192 -~~~i~  196 (233)
T cd06220         192 -RAQFS  196 (233)
T ss_pred             -cEEEE
Confidence             67775

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=100.00  E-value=3.8e-33  Score=250.40  Aligned_cols=202  Identities=19%  Similarity=0.363  Sum_probs=168.6

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      +|+.++|++++++++++..++|+.+  ....+.||||+.++++..      +....||||+++.+  .+.++|.||..  
T Consensus         3 ~~~~~~V~~~~~~t~d~~~l~l~~~--~~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~--~~~l~l~Vk~~--   70 (250)
T PRK00054          3 KPENMKIVENKEIAPNIYTLVLDGE--KVFDMKPGQFVMVWVPGV------EPLLERPISISDID--KNEITILYRKV--   70 (250)
T ss_pred             CceEEEEEEEEEecCCeEEEEEeCc--cccCCCCCcEEEEEeCCC------CCcCceeeEEeeeC--CCEEEEEEEEc--
Confidence            5778999999999999999999955  357899999999998754      44578999999987  58999999986  


Q ss_pred             CccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296          157 GKMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK  235 (328)
Q Consensus       157 G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~  235 (328)
                      |.+|++|+++++||+|.|.||+|. |.++. ..++++||||||||||++++++++...+   .+++|+|++|+.+|+++.
T Consensus        71 G~~t~~l~~l~~G~~v~i~gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~  146 (250)
T PRK00054         71 GEGTKKLSKLKEGDELDIRGPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGARTKDEVIFE  146 (250)
T ss_pred             ChHHHHHhcCCCCCEEEEEcccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcCCHHHhhhH
Confidence            899999999999999999999997 76653 5689999999999999999999998653   579999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH
Q 020296          236 QKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL  315 (328)
Q Consensus       236 ~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L  315 (328)
                      +||+++++    +  ++. .  ++.|.+..|++++ .+.+..   .....||+|||++|++++.             +.|
T Consensus       147 ~el~~~~~----~--~~~-~--~~~~~~~~g~v~~-~l~~~~---~~~~~vyvCGp~~m~~~v~-------------~~l  200 (250)
T PRK00054        147 EEFAKVGD----V--YVT-T--DDGSYGFKGFVTD-VLDELD---SEYDAIYSCGPEIMMKKVV-------------EIL  200 (250)
T ss_pred             HHHHhcCC----E--EEE-e--cCCCCCcccchhH-hHhhhc---cCCCEEEEeCCHHHHHHHH-------------HHH
Confidence            99998532    2  222 2  3456677888884 444433   2246899999999999998             899


Q ss_pred             hhcCC
Q 020296          316 KDLGY  320 (328)
Q Consensus       316 ~~~G~  320 (328)
                      .+.|+
T Consensus       201 ~~~Gv  205 (250)
T PRK00054        201 KEKKV  205 (250)
T ss_pred             HHcCC
Confidence            99998

>PRK05802 hypothetical protein; Provisional

Probab=100.00  E-value=6.6e-33  Score=256.19  Aligned_cols=204  Identities=16%  Similarity=0.205  Sum_probs=159.4

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEE
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV  153 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~  153 (328)
                      +....+++|++++.++++++.++|+.|.. ....++||||++++++..      +....|||||++.+.+.+.++|+||.
T Consensus        61 ~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~------~~~~~rP~SI~~~~~~~g~l~l~ik~  134 (320)
T PRK05802         61 GRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNS------SSFFDVPISIMEADTEENIIKVAIEI  134 (320)
T ss_pred             ccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCC------CCEeEEeeEecccCCCCCEEEEEEEe
Confidence            34566899999999999999999998852 224579999999998753      44567999999998778999999999


Q ss_pred             eCCCccchhhhcCCCCCEEEEEceeec--cccC---CCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC
Q 020296          154 YPEGKMSQHFASLKPGDVVEVKGPIEK--LRYS---PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS  228 (328)
Q Consensus       154 ~~~G~~S~~L~~l~~Gd~v~v~GP~G~--~~~~---~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~  228 (328)
                      .  |.+|++|+++++||+|.|+||+|+  |.+.   ....++++|||||+||||++++++++++++   .+|+|+|++|+
T Consensus       135 ~--G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~---~~v~li~g~r~  209 (320)
T PRK05802        135 R--GVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG---NKIIVIIDKGP  209 (320)
T ss_pred             c--ChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence            6  999999999999999999999964  5543   234568999999999999999999998764   47999999999


Q ss_pred             CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhh
Q 020296          229 PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       229 ~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      .+|+++.++|+++..+.   .+..++++...++ +.+|.++     +.+++. +...||+|||+.|++++.
T Consensus       210 ~~~~~~~~el~~~~~~~---~~~~~~ddG~~~~-~~~g~v~-----~~l~~~-~~~~vy~CGP~~M~k~v~  270 (320)
T PRK05802        210 FKNNFIKEYLELYNIEI---IELNLLDDGELSE-EGKDILK-----EIIKKE-DINLIHCGGSDILHYKII  270 (320)
T ss_pred             HHHHHHHHHHHHhhCce---EEEEecccCCCCc-cccchHH-----HHhcCC-CCCEEEEECCHHHHHHHH
Confidence            99999999999987542   2221122211111 1234444     333322 236899999999999998

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=100.00  E-value=4.2e-33  Score=245.34  Aligned_cols=183  Identities=21%  Similarity=0.304  Sum_probs=145.9

Q ss_pred             EEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCC----------CCccccccccCCcCCCCC---CeEEEE
Q 020296           85 DTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEG----------NTKYVVRPYTPISDTEAK---GHFDLL  150 (328)
Q Consensus        85 ~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~----------~~~~~~RpYTi~s~~~~~---~~l~l~  150 (328)
                      +++.+++++++|+|+++. .....|.||||+.++++.......          .+....|+|||+|.|.+.   +.++|.
T Consensus         2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~   81 (220)
T cd06197           2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT   81 (220)
T ss_pred             cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence            568899999999999986 445899999999999864210000          022467999999998654   799999


Q ss_pred             EEEeCCCccchhhhcCC--C---CCEEEEEceeeccccCC---CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEE
Q 020296          151 IKVYPEGKMSQHFASLK--P---GDVVEVKGPIEKLRYSP---NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSL  222 (328)
Q Consensus       151 Vk~~~~G~~S~~L~~l~--~---Gd~v~v~GP~G~~~~~~---~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L  222 (328)
                      ||..  |.+|++|+++.  .   |++|.+.||+|.|.++.   +..++++||||||||||+++|++++++..+...+|+|
T Consensus        82 vk~~--G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v~l  159 (220)
T cd06197          82 VRKK--GPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITL  159 (220)
T ss_pred             EEeC--CCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccCCCcEEE
Confidence            9998  99999999653  3   99999999999998875   3468999999999999999999999876444578999


Q ss_pred             EEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhh
Q 020296          223 LYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       223 ~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      +|++|+.+|+++.+||.++.. . .+.+..+.+                            ..||+|||++|++++.
T Consensus       160 ~~~~r~~~~~~~~~el~~~~~-~-~~~~~~~~~----------------------------~~v~~CGP~~m~~~~~  206 (220)
T cd06197         160 LWSLREDDLPLVMDTLVRFPG-L-PVSTTLFIT----------------------------SEVYLCGPPALEKAVL  206 (220)
T ss_pred             EEEecchhhHHHHHHHHhccC-C-ceEEEEEEe----------------------------ccEEEECcHHHHHHHH
Confidence            999999999999999977643 1 122221111                            1799999999999997

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=100.00  E-value=6.5e-33  Score=246.70  Aligned_cols=214  Identities=16%  Similarity=0.205  Sum_probs=165.5

Q ss_pred             EEEEEEecCCeeEEEEEcCCCC-CCCcccceEEEEEecCCCC-------------CCCCCccccccccCCcCCCCCCeEE
Q 020296           83 LQDTARVSHNSHLFRFSFDPSA-KLGLDVASCILTRAPLGQD-------------AEGNTKYVVRPYTPISDTEAKGHFD  148 (328)
Q Consensus        83 v~~~~~~s~~~~~~~~~~p~~~-~~~~~~Gq~v~l~~~~~~~-------------~~~~~~~~~RpYTi~s~~~~~~~l~  148 (328)
                      |++++++++++++|+|+.+... ...+.||||+.+.++....             ..+.+....|+||+++.+.+.++++
T Consensus         1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~   80 (235)
T cd06193           1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD   80 (235)
T ss_pred             CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence            5789999999999999988622 3678999999999875410             0001346789999999887789999


Q ss_pred             EEEEEeCC-CccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeC
Q 020296          149 LLIKVYPE-GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNI  227 (328)
Q Consensus       149 l~Vk~~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r  227 (328)
                      |.|+.+++ |.+|+||+++++||+|.+.||+|.|.+.+ ..++++||||||||||+++|++++...    .+++++|+++
T Consensus        81 ~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~----~~~~~~~~~~  155 (235)
T cd06193          81 IDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD----ARGTALIEVP  155 (235)
T ss_pred             EEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC----CeEEEEEEEC
Confidence            99999887 99999999999999999999999988765 457999999999999999999987643    6899999999


Q ss_pred             CCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCC
Q 020296          228 SPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS  307 (328)
Q Consensus       228 ~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~  307 (328)
                      +.+|++..++       .++++++++.+.+...  +..+.   ..+. .......+..+|+|||++|+++++        
T Consensus       156 ~~~d~~~l~~-------~~~~~~~~~~~~~~~~--~~~~~---~~~~-~~~~~~~~~~vyicGp~~mv~~v~--------  214 (235)
T cd06193         156 DAADEQPLPA-------PAGVEVTWLHRGGAEA--GELAL---LAVR-ALAPPAGDGYVWIAGEAGAVRALR--------  214 (235)
T ss_pred             CHHHccccCC-------CCCcEEEEEeCCCCCc--chhHH---HHHh-cccCCCCCeEEEEEccHHHHHHHH--------
Confidence            9877543222       2357777776543321  11121   1122 233333457999999999999998        


Q ss_pred             cchHHHHHhh-cCCCCCCeEe
Q 020296          308 QGELSGILKD-LGYTEQMVYK  327 (328)
Q Consensus       308 qg~~~~~L~~-~G~~~~~I~~  327 (328)
                           ..|.+ .|+++++||.
T Consensus       215 -----~~l~~~~g~~~~~i~~  230 (235)
T cd06193         215 -----RHLREERGVPRAQVYA  230 (235)
T ss_pred             -----HHHHHccCCCHHHEEE
Confidence                 78865 6999999985

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=100.00  E-value=6e-33  Score=241.09  Aligned_cols=243  Identities=26%  Similarity=0.449  Sum_probs=208.2

Q ss_pred             CCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCC------------CC----------
Q 020296           69 PKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDA------------EG----------  126 (328)
Q Consensus        69 ~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~------------~~----------  126 (328)
                      ++..++-++| +++|++......-++.+.+.+|++....|++|-|+.+..|.-...            ||          
T Consensus       126 pEe~fgvkkW-ectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs  204 (410)
T COG2871         126 PEEVFGVKKW-ECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVS  204 (410)
T ss_pred             hHHhcCccce-eEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeec
Confidence            4557778888 689999998888889999999997788999999999987632100            11          


Q ss_pred             -CCccccccccCCcCCCCCCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEec
Q 020296          127 -NTKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAG  196 (328)
Q Consensus       127 -~~~~~~RpYTi~s~~~~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAg  196 (328)
                       ......|.||.+|.|.+.+.+.|-||..         |-|.+|+|+.+|++||.|.|.||+|.|..+. ...++|||+|
T Consensus       205 ~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKd-tdaemvFigG  283 (410)
T COG2871         205 KVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGG  283 (410)
T ss_pred             cccHHHHHHhhhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhcc-CCCceEEEec
Confidence             2345789999999999999999999964         4688999999999999999999999987765 4689999999


Q ss_pred             CccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHHHh
Q 020296          197 GTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDTAL  274 (328)
Q Consensus       197 GtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~l~  274 (328)
                      |.|.+||++-+-..+.+-..++++.+.|++|+..+.+|.+++++|+.++|||+.|..++++  .++|++..|++...+.+
T Consensus       284 GAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFihnv~~e  363 (410)
T COG2871         284 GAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYE  363 (410)
T ss_pred             CcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHHHHHHh
Confidence            9999999999988887767789999999999999999999999999999999999999986  46899999999876665


Q ss_pred             hcCCCC--CCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeE
Q 020296          275 KGLPSP--SDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVY  326 (328)
Q Consensus       275 ~~~~~~--~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~  326 (328)
                      ..+.+.  .++..+|+||||-|..++-             ..|+++|+.+++|.
T Consensus       364 n~Lk~h~aPEDceyYmCGPp~mNasvi-------------kmL~dlGVE~enIl  404 (410)
T COG2871         364 NYLKDHEAPEDCEYYMCGPPLMNASVI-------------KMLKDLGVERENIL  404 (410)
T ss_pred             hhhhcCCCchheeEEeeCcchhhHHHH-------------HHHHhcCcccccee
Confidence            544322  2579999999999999985             99999999999985

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=6.5e-32  Score=241.62  Aligned_cols=190  Identities=17%  Similarity=0.205  Sum_probs=150.8

Q ss_pred             CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC-----Cccchhhhc-
Q 020296           92 NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE-----GKMSQHFAS-  165 (328)
Q Consensus        92 ~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~-----G~~S~~L~~-  165 (328)
                      ++.+|+|+.++ ....|.||||+.+.++.        ....|+|||+|.|. .+.++|+||..++     |.+|.||++ 
T Consensus        17 ~v~~l~l~~~~-~~~~f~pGQ~v~l~~~~--------~~~~R~YSIas~p~-~~~l~l~Vk~~~~~~~~~G~~S~~L~~~   86 (245)
T cd06200          17 PLWRLRLTPPD-AGAQWQAGDIAEIGPRH--------PLPHREYSIASLPA-DGALELLVRQVRHADGGLGLGSGWLTRH   86 (245)
T ss_pred             ceEEEEEecCC-CCCCccCCcEEEecCCC--------CCCCcceEeccCCC-CCEEEEEEEEeccCCCCCeeechhhhhC
Confidence            37788888763 45789999999998642        23679999999986 5899999999877     789999985 


Q ss_pred             CCCCCEEEEEceee-ccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHH
Q 020296          166 LKPGDVVEVKGPIE-KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP-DDILLKQKLDILAA  243 (328)
Q Consensus       166 l~~Gd~v~v~GP~G-~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~  243 (328)
                      +++||+|.+.||.| .|.++. ..++++|||||||||||++|++++...+  ..+++|+|++|+. +|++|.+||++|++
T Consensus        87 ~~~Gd~v~i~gp~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r~~~~d~~~~~el~~~~~  163 (245)
T cd06200          87 APIGASVALRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGERQAAHDFFCREELEAWQA  163 (245)
T ss_pred             CCCCCEEEEEecCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecCCccccHhHHHHHHHHHH
Confidence            68999999999865 676654 4579999999999999999999998753  2579999999998 48999999999999


Q ss_pred             hCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCC----CCCcEEEEECCh-hhHHhhh
Q 020296          244 SHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSP----SDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       244 ~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~----~~~~~v~vCGP~-~m~~~v~  299 (328)
                      +++++++++++++++.    ..++++. .+.+..+..    ..+..||+|||+ +|++++.
T Consensus       164 ~~~~~~~~~~~s~~~~----~~~~v~~-~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~  219 (245)
T cd06200         164 AGHLARLDLAFSRDQA----QKRYVQD-RLRAAADELRAWVAEGAAIYVCGSLQGMAPGVD  219 (245)
T ss_pred             CCCcceEEEEEccCCC----CCcchHH-HHHHhHHHHHHHHHCCcEEEEECCchhhhHHHH
Confidence            9888888888776432    2456653 333221110    124789999999 9999997

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=1.3e-30  Score=267.15  Aligned_cols=204  Identities=20%  Similarity=0.274  Sum_probs=171.2

Q ss_pred             EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      ++|++++.++++++.|+|+.|. ....++||||++|+++..      +  ..|||||++.+.+.+.++|+||..  |.+|
T Consensus         2 ~~I~~~~~~t~~v~~l~l~~p~-~~~~~~pGQFv~l~~~~~------~--~~rp~Si~~~~~~~g~i~~~vk~v--G~~T   70 (752)
T PRK12778          2 NKIVEKEIFSEKVFLLEIEAPL-IAKSRKPGQFVIVRVGEK------G--ERIPLTIADADPEKGTITLVIQEV--GLST   70 (752)
T ss_pred             CEEEEEEEEcCCEEEEEEeCCc-hhccCCCCeeEEEEeCCC------C--CeeEEEeeeeCCCCCEEEEEEEEc--CchH
Confidence            5799999999999999999774 235689999999998643      3  368999999988889999999998  9999


Q ss_pred             hhhhcCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHH
Q 020296          161 QHFASLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLD  239 (328)
Q Consensus       161 ~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~  239 (328)
                      ++|+++++||.| .|.||+|++...+ ..++++|||||+||||++++++++.+++   .+++++|++|+.+++++.+||+
T Consensus        71 ~~L~~l~~Gd~v~~v~GP~G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r~~~~l~~~~el~  146 (752)
T PRK12778         71 TKLCELNEGDYITDVVGPLGNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGRSKELIILEDEMR  146 (752)
T ss_pred             HHHhcCCCCCEeCeEeCCCCCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccCCHHHhhhHHHHH
Confidence            999999999999 7999999976654 3479999999999999999999998764   4899999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcC
Q 020296          240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLG  319 (328)
Q Consensus       240 ~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G  319 (328)
                      +|..+     +++. +  +++|.|..|++++ .+++.++...+...||+|||++|++++.             ..|++.|
T Consensus       147 ~~~~~-----~~~~-t--~dg~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~~v~-------------~~l~~~g  204 (752)
T PRK12778        147 ESSDE-----VIIM-T--DDGSYGRKGLVTD-GLEEVIKRETKVDKVFAIGPAIMMKFVC-------------LLTKKYG  204 (752)
T ss_pred             hhcCe-----EEEE-E--CCCCCCCcccHHH-HHHHHhhcCCCCCEEEEECCHHHHHHHH-------------HHHHHcC
Confidence            98643     2222 2  3467888999984 6666654432346899999999999998             8999999


Q ss_pred             CC
Q 020296          320 YT  321 (328)
Q Consensus       320 ~~  321 (328)
                      ++
T Consensus       205 v~  206 (752)
T PRK12778        205 IP  206 (752)
T ss_pred             CC
Confidence            86

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.97  E-value=2.1e-29  Score=261.02  Aligned_cols=216  Identities=20%  Similarity=0.269  Sum_probs=174.6

Q ss_pred             CCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeC
Q 020296           76 DKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYP  155 (328)
Q Consensus        76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~  155 (328)
                      ..+.+++|++++.++++++.|+|+.|. ....+.||||+.++....      +  ..||||+++.+.+.+.++|+||.+ 
T Consensus       646 ~~~~~~~I~~~~~lt~dv~~~~l~~p~-~~~~~~PGQFv~L~~~~~------g--e~rP~SIas~~~~~g~i~l~Vk~v-  715 (944)
T PRK12779        646 LGQIPQTIVGKVQLAGGIVEFTVRAPM-VARSAQAGQFVRVLPWEK------G--ELIPLTLADWDAEKGTIDLVVQGM-  715 (944)
T ss_pred             ccceEEEEEEEEEecCCEEEEEEeCCC-ccccCCCCceEEEEeCCC------C--CEEeEEccCCCCCCCEEEEEEEee-
Confidence            357899999999999999999999874 235789999999997543      3  358999999887779999999998 


Q ss_pred             CCccchhhhcCCCCCEEE-EEceeeccc-cCC-CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296          156 EGKMSQHFASLKPGDVVE-VKGPIEKLR-YSP-NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI  232 (328)
Q Consensus       156 ~G~~S~~L~~l~~Gd~v~-v~GP~G~~~-~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~  232 (328)
                       |.+|.+|+++++||.|. |.||+|++. ++. ...++++|||||+||||+++|++++.+.+   .+|+|+|++|+.+++
T Consensus       716 -G~~T~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~Rs~edl  791 (944)
T PRK12779        716 -GTSSLEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFRAKEFL  791 (944)
T ss_pred             -ccHHHHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeCCHHHh
Confidence             88999999999999994 999999864 332 22368999999999999999999988764   579999999999998


Q ss_pred             hhHHH---HHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCCC---C--CCcEEEEECChhhHHhhhcccc
Q 020296          233 LLKQK---LDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSP---S--DDALILVCGPPGMMKHVSGEKA  303 (328)
Q Consensus       233 ~~~~e---l~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~---~--~~~~v~vCGP~~m~~~v~g~~~  303 (328)
                      ++.++   |++|++.+++ ++++++.   +++|.|..|+++. .+++.+...   .  ....||+|||++||+++.    
T Consensus       792 ~~~del~~L~~la~~~~~~~~v~~tt---ddgs~G~~G~Vt~-~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~----  863 (944)
T PRK12779        792 FWTGDDERVGKLKAEFGDQLDVIYTT---NDGSFGVKGFVTG-PLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVS----  863 (944)
T ss_pred             hhHHHHHHHHHHHHHcCCCeEEEEEe---cCCCCCCccccCh-HHHHHHHhcccccccCCcEEEEECCHHHHHHHH----
Confidence            88765   5667788886 6665542   3457788899985 344433221   1  135799999999999998    


Q ss_pred             cCCCcchHHHHHhhcCCCC
Q 020296          304 KDYSQGELSGILKDLGYTE  322 (328)
Q Consensus       304 ~~~~qg~~~~~L~~~G~~~  322 (328)
                               ..|++.|++.
T Consensus       864 ---------~~l~~~Gv~~  873 (944)
T PRK12779        864 ---------DLTKPYGVKT  873 (944)
T ss_pred             ---------HHHHHcCCCe
Confidence                     8999999986

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.96  E-value=3.1e-28  Score=212.86  Aligned_cols=178  Identities=18%  Similarity=0.283  Sum_probs=140.2

Q ss_pred             EEEEec-CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEeCCCccchh
Q 020296           85 DTARVS-HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVYPEGKMSQH  162 (328)
Q Consensus        85 ~~~~~s-~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~~~G~~S~~  162 (328)
                      .++.++ +++..++|+.+.  ...+.||||++++++..     .+....|||||++.+.+ .+.++|+||..+ |..++.
T Consensus         3 ~~~~~~~~~~~~l~~~~~~--~~~~~pGq~v~l~~~~~-----~~~~~~hpfsias~~~~~~~~i~~~vk~~~-G~~t~~   74 (210)
T cd06186           3 TVELLPDSDVIRLTIPKPK--PFKWKPGQHVYLNFPSL-----LSFWQSHPFTIASSPEDEQDTLSLIIRAKK-GFTTRL   74 (210)
T ss_pred             EEEEecCCCEEEEEEecCC--CCccCCCCEEEEEeCCC-----CCCcccCCcEeeeCCCCCCCEEEEEEEecC-ChHHHH
Confidence            455566 899999998773  56899999999999753     24568899999999876 689999999874 666766


Q ss_pred             hhcCC------CCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCC---CCCeEEEEEeeCCCchh-
Q 020296          163 FASLK------PGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPD---DNTQVSLLYGNISPDDI-  232 (328)
Q Consensus       163 L~~l~------~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~---~~~~i~L~~~~r~~~d~-  232 (328)
                      +..++      .|+++.+.||+|.+..+....++++|||||+||||++++++++....+   ...+|+|+|++|+.+++ 
T Consensus        75 ~~~~~~~~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~  154 (210)
T cd06186          75 LRKALKSPGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLE  154 (210)
T ss_pred             HHHHHhCcCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhH
Confidence            66776      899999999999976344567899999999999999999999987632   35789999999999994 


Q ss_pred             hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhh
Q 020296          233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      ++.++|.+..+-....+++.++++                             |++|||.+|++.++
T Consensus       155 ~~~~~l~~~~~~~~~~~~~i~~T~-----------------------------v~~CGp~~~~~~~~  192 (210)
T cd06186         155 WFLDELRAAQELEVDGEIEIYVTR-----------------------------VVVCGPPGLVDDVR  192 (210)
T ss_pred             HHHHHHHhhhhccCCceEEEEEee-----------------------------EEEECchhhccHHH
Confidence            788998751111111134444432                             99999999999998

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=249.29  Aligned_cols=202  Identities=16%  Similarity=0.295  Sum_probs=166.9

Q ss_pred             EEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCccc
Q 020296           81 FKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        81 ~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~S  160 (328)
                      ++|++++.++++++.++|+.|.. ...++||||+.|+++..      +  ..||||+++.+.+.+.++|.||..  |.+|
T Consensus         2 ~~I~~~~~l~~~~~~l~l~ap~~-a~~~~PGQFV~l~~~~~------~--errplSIa~~~~~~g~i~l~vk~v--G~~T   70 (1006)
T PRK12775          2 YSIVRREAFSDTTFLWEVEAPDV-AASAEPGHFVMLRLYEG------A--ERIPLTVADFDRKKGTITMVVQAL--GKTT   70 (1006)
T ss_pred             cEEEEEEEecCCEEEEEEecCCc-ccCCCCCeeEEEEeCCC------C--eeEEEEecCcCCCCCEEEEEEEec--CcHH
Confidence            57999999999999999998852 36789999999998543      3  368999999887789999999997  8999


Q ss_pred             hhhh-cCCCCCEE-EEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHH
Q 020296          161 QHFA-SLKPGDVV-EVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL  238 (328)
Q Consensus       161 ~~L~-~l~~Gd~v-~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el  238 (328)
                      +||+ ++++||.| .+.||+|.+.... ..++++|||||+||||+++|++++.+.+   .+++++|+.|+.+++++.+||
T Consensus        71 ~~L~~~lk~Gd~l~~v~GPlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R~~~~l~~~del  146 (1006)
T PRK12775         71 REMMTKFKAGDTFEDFVGPLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFRNKDLVFWEDKF  146 (1006)
T ss_pred             HHHHhcCCCCCEEeeeecCCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCCChHHcccHHHH
Confidence            9995 89999999 7999999864333 3578999999999999999999988764   479999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhc
Q 020296          239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDL  318 (328)
Q Consensus       239 ~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~  318 (328)
                      .++...   +  +++ +  +++|.|..|+++. .+.+.+... ....||+|||++||+.+.             .++++.
T Consensus       147 ~~~~~~---~--~v~-t--ddgs~G~~G~vt~-~l~~~l~~~-~~d~vy~CGP~~Mm~av~-------------~~~~~~  203 (1006)
T PRK12775        147 GKYCDD---L--IVC-T--DDGSYGKPGFVTA-ALKEVCEKD-KPDLVVAIGPLPMMNACV-------------ETTRPF  203 (1006)
T ss_pred             HhhcCc---E--EEE-E--CCCCCCCCCChHH-HHHHHhccC-CCCEEEEECCHHHHHHHH-------------HHHHHC
Confidence            877532   2  222 2  3457788899984 566655442 235799999999999998             899999


Q ss_pred             CC
Q 020296          319 GY  320 (328)
Q Consensus       319 G~  320 (328)
                      |+
T Consensus       204 gi  205 (1006)
T PRK12775        204 GV  205 (1006)
T ss_pred             CC
Confidence            98

>PLN02292 ferric-chelate reductase

Probab=99.96  E-value=2.4e-27  Score=236.19  Aligned_cols=203  Identities=20%  Similarity=0.296  Sum_probs=161.2

Q ss_pred             EEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEeCCC
Q 020296           79 IGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVYPEG  157 (328)
Q Consensus        79 ~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~G  157 (328)
                      ..+++++++.+++++.+++|+.++  ...+.||||+++.++..      +..++|||||+|.+. +++.++|+||.+  |
T Consensus       325 ~~~~Iv~~~~l~~dvv~L~~~~~~--~~~~~PGQ~vfL~~P~~------s~~q~HPFTIaSsp~~~~~~l~l~IK~~--G  394 (702)
T PLN02292        325 NNVKLVSARVLPCDTVELNFSKNP--MLMYSPTSIMFVNIPSI------SKLQWHPFTITSSSKLEPEKLSVMIKSQ--G  394 (702)
T ss_pred             cceEEEEEEEcCCCEEEEEEEcCC--CCCcCCCCeEEEEEccC------CccceeeeEeeccCCCCCCEEEEEEEcC--C
Confidence            468899999999999999998764  46799999999999764      556899999999874 568899999986  8


Q ss_pred             ccchhhh-cCCCCCE-----EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCC----CCeEEEEEeeC
Q 020296          158 KMSQHFA-SLKPGDV-----VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD----NTQVSLLYGNI  227 (328)
Q Consensus       158 ~~S~~L~-~l~~Gd~-----v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~----~~~i~L~~~~r  227 (328)
                      .+|++|+ .++.||.     |.++||||.+..+....++++|||||+||||++++++++.++.++    .++++|+|++|
T Consensus       395 ~~T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR  474 (702)
T PLN02292        395 KWSTKLYHMLSSSDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFK  474 (702)
T ss_pred             chhHHHHHhCCCCCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEEC
Confidence            8999998 5788884     579999998754445568999999999999999999999875432    26899999999


Q ss_pred             CCchhhhHHHHHH-------HHHhCCCeEEEEEEeCCCCCC-CCcccccCHHHHhhcCCCCC--CCcEEEEECChhh
Q 020296          228 SPDDILLKQKLDI-------LAASHPNLKVFYTVDNPTKNW-KGGVGYISKDTALKGLPSPS--DDALILVCGPPGM  294 (328)
Q Consensus       228 ~~~d~~~~~el~~-------l~~~~~~~~v~~~~~~~~~~~-~g~~g~i~~~~l~~~~~~~~--~~~~v~vCGP~~m  294 (328)
                      +.+|+.+.+++..       ++++ .+++++.+++++.+.. ++..|  +++++++.++.|.  ++..+.+|||+.-
T Consensus       475 ~~~Dl~~ld~l~~e~~~~~~l~~~-~~~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~Gp~~~  548 (702)
T PLN02292        475 NSSDLSMLDLILPTSGLETELSSF-IDIQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPISPILGPNSW  548 (702)
T ss_pred             CHHHhhHHHHHHHhhhhHHHHhhc-CCceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCceEEEeCCCch
Confidence            9999988765443       3333 4566666777654332 33344  7888988877666  7899999999864

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.94  E-value=8.2e-27  Score=221.45  Aligned_cols=165  Identities=22%  Similarity=0.219  Sum_probs=135.0

Q ss_pred             ccccccccCCcCCCC-CCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCc
Q 020296          129 KYVVRPYTPISDTEA-KGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGT  198 (328)
Q Consensus       129 ~~~~RpYTi~s~~~~-~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGt  198 (328)
                      ....|+|||+|+|.. .+.++|+|+.+         +.|.+|+||+++++||+|.+.+|.|.|.++.+...+++|||+||
T Consensus       161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~~~~~plImIa~Gt  240 (382)
T cd06207         161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPKDPKKPIIMVGPGT  240 (382)
T ss_pred             CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCCCCCCCCEEEEcCCc
Confidence            357899999999864 68999999976         56999999999999999999999999998766678999999999


Q ss_pred             cHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHh
Q 020296          199 GITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTAL  274 (328)
Q Consensus       199 GItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~  274 (328)
                      |||||++++++....   .....+++|+|++|+. +|++|.+||++|++..++++++...++++.    ..++++..+.+
T Consensus       241 GIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~----~~~yVq~~l~~  316 (382)
T cd06207         241 GLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP----KKVYVQDLIRE  316 (382)
T ss_pred             cHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC----CceEhHHHHHH
Confidence            999999999987532   2235789999999998 899999999999998877889888887543    24666632211


Q ss_pred             ------hcCCCCCCCcEEEEECChh-hHHhhh
Q 020296          275 ------KGLPSPSDDALILVCGPPG-MMKHVS  299 (328)
Q Consensus       275 ------~~~~~~~~~~~v~vCGP~~-m~~~v~  299 (328)
                            +.+..  +...||||||+. |+++++
T Consensus       317 ~~~~~~~~l~~--~~~~vYvCG~~~~M~~~V~  346 (382)
T cd06207         317 NSDLVYQLLEE--GAGVIYVCGSTWKMPPDVQ  346 (382)
T ss_pred             CHHHHHHHHhc--CCCEEEEECCcccccHHHH
Confidence                  12221  235899999998 999997

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.94  E-value=5.2e-27  Score=222.96  Aligned_cols=179  Identities=24%  Similarity=0.326  Sum_probs=137.7

Q ss_pred             CcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEeC----------CCccchhhhcCCCCCEEEE-
Q 020296          107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVYP----------EGKMSQHFASLKPGDVVEV-  174 (328)
Q Consensus       107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~~----------~G~~S~~L~~l~~Gd~v~v-  174 (328)
                      ....||++.+. +.         ...|+|||+|+|.. .+.++|.|+...          .|.+|+||+++++||+|.+ 
T Consensus       146 ~~~~~~~l~~~-p~---------l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~  215 (384)
T cd06206         146 ALPLATFLAML-PP---------MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVS  215 (384)
T ss_pred             CCCHHHHHHhC-cc---------cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEE
Confidence            45678887765 32         26799999999853 577777776542          6899999999999999985 


Q ss_pred             -EceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeE
Q 020296          175 -KGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLK  249 (328)
Q Consensus       175 -~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~  249 (328)
                       ++|.|.|.++.+..++++||||||||||++++++++...   .....+++|+|++|+. +|++|.+||++|++ .++++
T Consensus       216 i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~-~~~~~  294 (384)
T cd06206         216 VRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEA-AGVVS  294 (384)
T ss_pred             EecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHH-CCCeE
Confidence             589999988776678999999999999999999987532   2234689999999999 89999999999987 46789


Q ss_pred             EEEEEeCCCCCCCCcccccCHHHHhh---cCCCCCCCcEEEEECChhhHHhhh
Q 020296          250 VFYTVDNPTKNWKGGVGYISKDTALK---GLPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       250 v~~~~~~~~~~~~g~~g~i~~~~l~~---~~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      ++.++++++..   ..++++..+.+.   ......++..||||||++|++++.
T Consensus       295 l~~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~  344 (384)
T cd06206         295 VRRAYSRPPGG---GCRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVR  344 (384)
T ss_pred             EEEEecccCCC---CCEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHH
Confidence            98888875432   246776422111   111012358899999999999997

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.94  E-value=1.7e-26  Score=220.05  Aligned_cols=169  Identities=21%  Similarity=0.316  Sum_probs=137.2

Q ss_pred             ccccccccCCcCCCC-CCeEEEEEEEeCC---CccchhhhcCC-----CCCEEEEEc-eeeccccCCC-CCceEEEEecC
Q 020296          129 KYVVRPYTPISDTEA-KGHFDLLIKVYPE---GKMSQHFASLK-----PGDVVEVKG-PIEKLRYSPN-MKKHIGMIAGG  197 (328)
Q Consensus       129 ~~~~RpYTi~s~~~~-~~~l~l~Vk~~~~---G~~S~~L~~l~-----~Gd~v~v~G-P~G~~~~~~~-~~~~ivlIAgG  197 (328)
                      ....|+|||+|+|.. .+.++|+|+.++.   |.+|+||++++     +|++|.+.+ |.|.|.++.+ ...+++|||+|
T Consensus       171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~G  250 (398)
T cd06203         171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPG  250 (398)
T ss_pred             cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCC
Confidence            347899999999865 5899999999864   99999999988     999999999 6778988765 46899999999


Q ss_pred             ccHHHHHHHHHHHHhC-----CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHH
Q 020296          198 TGITPMLQVIEAILKN-----PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKD  271 (328)
Q Consensus       198 tGItP~~~ll~~l~~~-----~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~  271 (328)
                      ||||||++++++....     .....+++|||++|+. +|++|.+||++|.+.++.++++.+.++++..| +.+++|+. 
T Consensus       251 tGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~-g~k~yVqd-  328 (398)
T cd06203         251 TGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDG-STPKYVQD-  328 (398)
T ss_pred             cChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCC-CCceecch-
Confidence            9999999999987641     2234789999999999 79999999999999887788888888866543 56789984 


Q ss_pred             HHhhcCCC-----CCCCcEEEEECC-hhhHHhhh
Q 020296          272 TALKGLPS-----PSDDALILVCGP-PGMMKHVS  299 (328)
Q Consensus       272 ~l~~~~~~-----~~~~~~v~vCGP-~~m~~~v~  299 (328)
                      .+.+....     ..++..|||||| +.|.++++
T Consensus       329 ~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~  362 (398)
T cd06203         329 KLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVR  362 (398)
T ss_pred             HHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHH
Confidence            44432211     123588999999 57888987

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.94  E-value=1.5e-26  Score=217.90  Aligned_cols=179  Identities=21%  Similarity=0.234  Sum_probs=141.7

Q ss_pred             CCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEe--------CCCccchhhhcC-CCCCEEEEE
Q 020296          106 LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVY--------PEGKMSQHFASL-KPGDVVEVK  175 (328)
Q Consensus       106 ~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~~l-~~Gd~v~v~  175 (328)
                      ..+.+||++.+..+          ...|+|||+|+|.. .+.++|+|+..        +.|.+|+||+++ ++||+|.+.
T Consensus       130 ~~~~~gq~l~l~~~----------~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~  199 (360)
T cd06199         130 ARLTAEELLDLLRP----------LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVF  199 (360)
T ss_pred             CCCCHHHHHHhCcC----------CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEE
Confidence            57789999888632          25799999999864 57899999876        579999999975 699999999


Q ss_pred             cee-eccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEE
Q 020296          176 GPI-EKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYT  253 (328)
Q Consensus       176 GP~-G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~  253 (328)
                      +|. |.|.++.+...+++|||+||||||+++|+++..... ...+++|+|++|+. +|++|.+||++|++.+.+++++..
T Consensus       200 ~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a  278 (360)
T cd06199         200 VQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTA  278 (360)
T ss_pred             EecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEE
Confidence            855 579887666789999999999999999999987543 34789999999997 799999999999988877888888


Q ss_pred             EeCCCCCCCCcccccCHHHHhhcCCC----CCCCcEEEEECCh-hhHHhhhc
Q 020296          254 VDNPTKNWKGGVGYISKDTALKGLPS----PSDDALILVCGPP-GMMKHVSG  300 (328)
Q Consensus       254 ~~~~~~~~~g~~g~i~~~~l~~~~~~----~~~~~~v~vCGP~-~m~~~v~g  300 (328)
                      .+++..    ..++++. .+.+....    ..++..||||||+ .|+++++.
T Consensus       279 ~Sr~~~----~~~yVq~-~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~  325 (360)
T cd06199         279 FSRDQA----EKVYVQD-RMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDA  325 (360)
T ss_pred             EccCCC----CCccHHH-HHHHhHHHHHHHHhCCCEEEEECCCccccHHHHH
Confidence            887543    2456653 23221111    1135789999999 89999873

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=99.93  E-value=5.1e-25  Score=210.36  Aligned_cols=166  Identities=20%  Similarity=0.262  Sum_probs=130.9

Q ss_pred             cccccccCCcCCCC-CCeEEEEEEEe-----------CCCccchhhhcCCCCCEEEEEcee-eccccCCCCCceEEEEec
Q 020296          130 YVVRPYTPISDTEA-KGHFDLLIKVY-----------PEGKMSQHFASLKPGDVVEVKGPI-EKLRYSPNMKKHIGMIAG  196 (328)
Q Consensus       130 ~~~RpYTi~s~~~~-~~~l~l~Vk~~-----------~~G~~S~~L~~l~~Gd~v~v~GP~-G~~~~~~~~~~~ivlIAg  196 (328)
                      ...|+|||+|+|.. .+.++|+|+.+           +.|.+|+||+++++||+|.+.++. +.|.++.+...+++|||+
T Consensus       175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~  254 (406)
T cd06202         175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGP  254 (406)
T ss_pred             cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCCCCCCCEEEEcC
Confidence            47899999999863 57788877653           258999999999999999998754 478887766789999999


Q ss_pred             CccHHHHHHHHHHHHhC-------CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccccc
Q 020296          197 GTGITPMLQVIEAILKN-------PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYI  268 (328)
Q Consensus       197 GtGItP~~~ll~~l~~~-------~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i  268 (328)
                      |||||||++++++....       .....+++|+|++|+. +|.+|.+||+++++....++++.+.++++..   .++||
T Consensus       255 GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~---~k~yV  331 (406)
T cd06202         255 GTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGK---PKTYV  331 (406)
T ss_pred             CcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCC---CCeeh
Confidence            99999999999986421       1234789999999999 8999999999999887778888888875432   35788


Q ss_pred             CHHHHhhcCCC-----CCCCcEEEEECChhhHHhhh
Q 020296          269 SKDTALKGLPS-----PSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       269 ~~~~l~~~~~~-----~~~~~~v~vCGP~~m~~~v~  299 (328)
                      +. .|.+....     ...+..||||||+.|++++.
T Consensus       332 q~-~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~  366 (406)
T cd06202         332 QD-LLKEQAESVYDALVREGGHIYVCGDVTMAEDVS  366 (406)
T ss_pred             hh-HHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHH
Confidence            74 34322111     02358899999999999987

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.93  E-value=1.7e-25  Score=222.64  Aligned_cols=178  Identities=23%  Similarity=0.268  Sum_probs=141.8

Q ss_pred             CCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEe--------CCCccchhhhc-CCCCCEEEEE
Q 020296          106 LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVY--------PEGKMSQHFAS-LKPGDVVEVK  175 (328)
Q Consensus       106 ~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~  175 (328)
                      ..+.+||++.+..+          ...|+|||+|+|. ..+.++|+|+.+        +.|.+|+||++ +++||+|.|.
T Consensus       367 ~~~~~gq~v~ll~~----------~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~  436 (597)
T TIGR01931       367 ADLDAEQLISLLRP----------LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVY  436 (597)
T ss_pred             CCCCHHHHHHhCcc----------cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEE
Confidence            56789999887643          2679999999985 367899999864        57999999996 9999999999


Q ss_pred             cee-eccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEE
Q 020296          176 GPI-EKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYT  253 (328)
Q Consensus       176 GP~-G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~  253 (328)
                      +|. |.|.++.+...+++|||+|||||||+++++++.... ...+++|+|++|+ .+|++|.+||+++.+.....+++..
T Consensus       437 ~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~a  515 (597)
T TIGR01931       437 IEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLA  515 (597)
T ss_pred             EeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEE
Confidence            855 579887766689999999999999999999987653 3478999999998 7799999999999988766777777


Q ss_pred             EeCCCCCCCCcccccCHHHHhhcCCC----CCCCcEEEEEC-ChhhHHhhh
Q 020296          254 VDNPTKNWKGGVGYISKDTALKGLPS----PSDDALILVCG-PPGMMKHVS  299 (328)
Q Consensus       254 ~~~~~~~~~g~~g~i~~~~l~~~~~~----~~~~~~v~vCG-P~~m~~~v~  299 (328)
                      .+++.    +.+++++. .|.+....    ..++..||||| |+.|++++.
T Consensus       516 fSRd~----~~k~yVqd-~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~  561 (597)
T TIGR01931       516 FSRDQ----AEKIYVQH-RIREQGAELWQWLQEGAHIYVCGDAKKMAKDVH  561 (597)
T ss_pred             EecCC----CCCccHHH-HHHHhHHHHHHHHhCCcEEEEECCCccccHHHH
Confidence            77642    24577764 33322111    11358899999 889999987

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.92  E-value=4.6e-25  Score=211.31  Aligned_cols=166  Identities=20%  Similarity=0.267  Sum_probs=131.9

Q ss_pred             ccccccccCCcCCC-CCCeEEEEEEEeCC---------CccchhhhcCC---------------------CCCEEEEEce
Q 020296          129 KYVVRPYTPISDTE-AKGHFDLLIKVYPE---------GKMSQHFASLK---------------------PGDVVEVKGP  177 (328)
Q Consensus       129 ~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~---------G~~S~~L~~l~---------------------~Gd~v~v~GP  177 (328)
                      ....|.|||+|+|. ..+.++|+|+..+.         |.+|+||+++.                     +||.|.+..|
T Consensus       175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~  254 (416)
T cd06204         175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR  254 (416)
T ss_pred             cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence            35889999999985 45789999987643         99999999766                     8999999999


Q ss_pred             eeccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---CCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEE
Q 020296          178 IEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---PDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYT  253 (328)
Q Consensus       178 ~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~  253 (328)
                      .|.|.++.+...+++|||+||||||+++++++....   .....+++|+|++|+. +|++|.+||++|++.+++++++..
T Consensus       255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~~l~~a  334 (416)
T cd06204         255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTA  334 (416)
T ss_pred             cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCceEEEEE
Confidence            999988776678999999999999999999986532   2224689999999998 799999999999988777999888


Q ss_pred             EeCCCCCCCCcccccCHHHHhhcC----CCCCCCcEEEEECChh-hHHhhh
Q 020296          254 VDNPTKNWKGGVGYISKDTALKGL----PSPSDDALILVCGPPG-MMKHVS  299 (328)
Q Consensus       254 ~~~~~~~~~g~~g~i~~~~l~~~~----~~~~~~~~v~vCGP~~-m~~~v~  299 (328)
                      .+++..    ..++++. .+.+..    ....++..||+|||+. |+++++
T Consensus       335 ~Sr~~~----~k~yVq~-~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~  380 (416)
T cd06204         335 FSREQP----KKVYVQH-RLAEHAEQVWELINEGAYIYVCGDAKNMARDVE  380 (416)
T ss_pred             ECcCCC----CCcchHH-HHHHhHHHHHHHHHcCCEEEEECCcccchHHHH
Confidence            887543    3456553 232211    0011348899999998 999987

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>PLN02631 ferric-chelate reductase

Probab=99.91  E-value=3.9e-23  Score=205.79  Aligned_cols=170  Identities=21%  Similarity=0.309  Sum_probs=138.5

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEeCCCc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVYPEGK  158 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~G~  158 (328)
                      ..++++++.+++++.++++..++  ...+.||||++++++..      +..++||||++|.|+ +++.++|+||..  |.
T Consensus       309 ~~~lv~~~~l~~d~l~l~~~~~~--~~~~~PGQfvfL~~p~~------s~~q~HPFSIaSsp~~~~~~L~~~IK~~--Gg  378 (699)
T PLN02631        309 RSRLVSARILPSDNLELTFSKTP--GLHYTPTSILFLHVPSI------SKLQWHPFTITSSSNLEKDTLSVVIRRQ--GS  378 (699)
T ss_pred             eEEEEEEEEeCCCeEEEEEEcCC--CCcCCCCceEEEEeccC------CccceEEEEEeccCCCCCCEEEEEEEcC--Ch
Confidence            36788888899999988887553  36789999999999875      567899999999874 468899999985  88


Q ss_pred             cchhhhc-CCC-CC--EEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCC----CCeEEEEEeeCCCc
Q 020296          159 MSQHFAS-LKP-GD--VVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD----NTQVSLLYGNISPD  230 (328)
Q Consensus       159 ~S~~L~~-l~~-Gd--~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~----~~~i~L~~~~r~~~  230 (328)
                      +|++|++ ++. |+  +|.++||||.+..+....++++|||||+||||+++++++++++..+    .++|+|+|++|+.+
T Consensus       379 ~T~~L~~~l~~~g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~  458 (699)
T PLN02631        379 WTQKLYTHLSSSIDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH  458 (699)
T ss_pred             HHHHHHHhhhcCCCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH
Confidence            9999984 544 45  6888999998665555678999999999999999999999864221    24799999999999


Q ss_pred             hhhhHHHHHHHH-----HhCCCeEEEEEEeCCCC
Q 020296          231 DILLKQKLDILA-----ASHPNLKVFYTVDNPTK  259 (328)
Q Consensus       231 d~~~~~el~~l~-----~~~~~~~v~~~~~~~~~  259 (328)
                      |+.+.|||..+.     -+..|+++..++++++.
T Consensus       459 dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~  492 (699)
T PLN02631        459 DLAFLDLIFPLDISVSDISRLNLRIEAYITREDK  492 (699)
T ss_pred             HhhhHHHHhhhccchhhhhcCceEEEEEEcCCCC
Confidence            999999998631     11347999999998754

>PRK06214 sulfite reductase; Provisional

Probab=99.91  E-value=1.8e-23  Score=203.60  Aligned_cols=163  Identities=21%  Similarity=0.268  Sum_probs=124.5

Q ss_pred             cccccccCCcCCC-CCCeEEEEEEEe--------CCCccchhhh-cCCCCCEEEEEc--eeeccccCCCCCceEEEEecC
Q 020296          130 YVVRPYTPISDTE-AKGHFDLLIKVY--------PEGKMSQHFA-SLKPGDVVEVKG--PIEKLRYSPNMKKHIGMIAGG  197 (328)
Q Consensus       130 ~~~RpYTi~s~~~-~~~~l~l~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~G--P~G~~~~~~~~~~~ivlIAgG  197 (328)
                      ...|+|||+|.|. ..+.++|+||..        +.|.+|+||+ ++++||+|.+.+  |.| |.++.+...++||||+|
T Consensus       314 l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp~~~~~PiImIg~G  392 (530)
T PRK06214        314 LQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG-FALPADPNTPIIMVGPG  392 (530)
T ss_pred             CCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCC-CccCCCCCCCEEEEcCC
Confidence            4579999999986 368999999865        4699999998 799999998865  445 88876656799999999


Q ss_pred             ccHHHHHHHHHHHHhCCCCCCeEEEEEeeC-CCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHh--
Q 020296          198 TGITPMLQVIEAILKNPDDNTQVSLLYGNI-SPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTAL--  274 (328)
Q Consensus       198 tGItP~~~ll~~l~~~~~~~~~i~L~~~~r-~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~--  274 (328)
                      ||||||++++++..... ...+++|||++| +..|++|.+||++|.+..+.++++...+++..    .+++++. .|.  
T Consensus       393 TGIAPfrsfLq~r~~~~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~----~k~YVQ~-~L~e~  466 (530)
T PRK06214        393 TGIAPFRAFLHERAATK-APGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGE----EKTYVQD-RMREN  466 (530)
T ss_pred             eeHHHHHHHHHHHHHhc-CCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCC----CCCchhh-HHHHH
Confidence            99999999999876432 236899999996 46799999999999988777777777777543    2355553 222  


Q ss_pred             --hcCCCCCCCcEEEEECChh-hHHhhh
Q 020296          275 --KGLPSPSDDALILVCGPPG-MMKHVS  299 (328)
Q Consensus       275 --~~~~~~~~~~~v~vCGP~~-m~~~v~  299 (328)
                        +......++..||||||.. |.++++
T Consensus       467 ~~~l~~~l~~~a~iYVCGp~~~M~~~V~  494 (530)
T PRK06214        467 GAELWKWLEEGAHFYVCGDAKRMAKDVE  494 (530)
T ss_pred             HHHHHhhhcCCcEEEEeCChHHHHHHHH
Confidence              1111112358899999976 447776

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.90  E-value=1.6e-22  Score=202.41  Aligned_cols=197  Identities=18%  Similarity=0.235  Sum_probs=144.6

Q ss_pred             EEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEeCCCccc
Q 020296           82 KLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVYPEGKMS  160 (328)
Q Consensus        82 ~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~~~G~~S  160 (328)
                      .+++++..++++.++++..+  ....+.||||+++.++..      +..++||||++|.|. +++.++|.||..  |.+|
T Consensus       315 ~vvs~~~~~~~~v~l~i~r~--~~~~f~PGQfV~L~vp~~------s~~q~HPFSIaS~p~~~~~~l~~~IK~~--gG~T  384 (722)
T PLN02844        315 CILSARLFPCKAIELVLPKD--PGLKYAPTSVIFMKIPSI------SRFQWHPFSITSSSNIDDHTMSVIIKCE--GGWT  384 (722)
T ss_pred             EEEEEEEecCCEEEEEEECC--CCCCcCCCeeEEEEECCC------CceeEEEEEeecCCCCCCCeEEEEEEeC--CCch
Confidence            45566777777766666544  357899999999999865      567899999999763 567899999986  6677


Q ss_pred             hhhhc-----CCCC------CEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCC----CCeEEEEEe
Q 020296          161 QHFAS-----LKPG------DVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD----NTQVSLLYG  225 (328)
Q Consensus       161 ~~L~~-----l~~G------d~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~----~~~i~L~~~  225 (328)
                      +.|.+     +++|      .++.|+||+|.+..+....++++|||||+||||++++++++.+....    ..+|+|+|+
T Consensus       385 ~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~  464 (722)
T PLN02844        385 NSLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYV  464 (722)
T ss_pred             HHHHHHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEE
Confidence            77752     3344      38999999998766555678999999999999999999999864321    257999999


Q ss_pred             eCCCchhhhHHHHHH-----HHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhh-----cCCCCCCCcEEEEECChhh
Q 020296          226 NISPDDILLKQKLDI-----LAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALK-----GLPSPSDDALILVCGPPGM  294 (328)
Q Consensus       226 ~r~~~d~~~~~el~~-----l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~-----~~~~~~~~~~v~vCGP~~m  294 (328)
                      +|+.+|+.+.+++..     +.++ .++++++++++++...    .++++ .++.     .+.-..+...+.+|||...
T Consensus       465 vR~~~dL~~~del~~~l~~~~~~~-~~lkl~iyVTRE~~~~----~rl~~-~i~~~~~~~~~~~~~~~~~~~i~G~~~~  537 (722)
T PLN02844        465 VKKSQDICLLNPISSLLLNQSSNQ-LNLKLKVFVTQEEKPN----ATLRE-LLNQFSQVQTVNFSTKCSRYAIHGLESF  537 (722)
T ss_pred             ECCHHHhhhHHHHHHHhHHhHHHh-cCceEEEEECCCCCCC----Cchhh-HhhccchhhhcCCCCCCCceEEeCCCch
Confidence            999999999998763     2222 3688888888865431    25542 2222     1111224577999999753

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=99.90  E-value=3.5e-23  Score=205.41  Aligned_cols=179  Identities=22%  Similarity=0.242  Sum_probs=137.6

Q ss_pred             CCcccceEEEEEecCCCCCCCCCccccccccCCcCCC-CCCeEEEEEEEe--------CCCccchhhh-cCCCCCEEEEE
Q 020296          106 LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTE-AKGHFDLLIKVY--------PEGKMSQHFA-SLKPGDVVEVK  175 (328)
Q Consensus       106 ~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~-~~~~l~l~Vk~~--------~~G~~S~~L~-~l~~Gd~v~v~  175 (328)
                      ..+.+||++.+..+          ...|+|||+|+|. ..++++|+|+.+        ..|.+|.||+ .+++||+|.+.
T Consensus       370 ~~~~~~q~l~ll~~----------l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~  439 (600)
T PRK10953        370 AQLDAEQLIGLLRP----------LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVF  439 (600)
T ss_pred             CCCCHHHHHHhCCC----------CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEE
Confidence            46778888776543          2579999999985 357888887542        4688999998 59999999999


Q ss_pred             ceee-ccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEE
Q 020296          176 GPIE-KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYT  253 (328)
Q Consensus       176 GP~G-~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~  253 (328)
                      +|.+ .|.++.+...+++|||+|||||||++++++..... ...+++|||++|+ ..|++|.+||++|.+.+...+++..
T Consensus       440 ~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~a  518 (600)
T PRK10953        440 IEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLA  518 (600)
T ss_pred             eccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEE
Confidence            9775 79888776789999999999999999999987653 3478999999998 7799999999999988665567777


Q ss_pred             EeCCCCCCCCcccccCHHHHhh---cCCCCCCCcEEEEECCh-hhHHhhh
Q 020296          254 VDNPTKNWKGGVGYISKDTALK---GLPSPSDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       254 ~~~~~~~~~g~~g~i~~~~l~~---~~~~~~~~~~v~vCGP~-~m~~~v~  299 (328)
                      .+++..    .++||+..+.+.   ......++..|||||+. .|.++|.
T Consensus       519 fSRd~~----~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~  564 (600)
T PRK10953        519 WSRDQK----EKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVE  564 (600)
T ss_pred             ECCCCC----CCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHH
Confidence            776542    356776433221   11111235899999996 5778886

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=99.87  E-value=2.3e-22  Score=174.02  Aligned_cols=217  Identities=21%  Similarity=0.226  Sum_probs=150.8

Q ss_pred             CCCCCeEEEEEEEEEEecCCeeEEEEEcCC--CCCCCcccceEEEEEecCCCCCCCCCcccccc--ccCCcCCCCCCeEE
Q 020296           73 LNPDKWIGFKLQDTARVSHNSHLFRFSFDP--SAKLGLDVASCILTRAPLGQDAEGNTKYVVRP--YTPISDTEAKGHFD  148 (328)
Q Consensus        73 l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~--~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~Rp--YTi~s~~~~~~~l~  148 (328)
                      -.+++|.+|+|++.+..+.|++.+++....  -..+...|||||.+....++.    ....-|-  ||..+.. .++.++
T Consensus       144 ~~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~----~~k~~~~~~~S~~~~t-~rN~~R  218 (385)
T KOG3378|consen  144 RGWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGL----SHKTLREYSLSNRVDT-CRNQFR  218 (385)
T ss_pred             cCCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCcc----chhHHHHHHHhhhhhh-hcccee
Confidence            358899999999999999999999998654  234556899999887655411    1223344  4444433 368899


Q ss_pred             EEEEEeCCCccchhhh-cCCCCCEEEEEceeeccccCC---CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEE
Q 020296          149 LLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSP---NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY  224 (328)
Q Consensus       149 l~Vk~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~---~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~  224 (328)
                      |.||+.-+|.+|+++| ++++||.|.++.|-|+|.+..   +...+++++|||+||||+++|++..+.-          |
T Consensus       219 ~sVr~~A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C----------~  288 (385)
T KOG3378|consen  219 ISVRRVAGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC----------Y  288 (385)
T ss_pred             EEEeehhchhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc----------C
Confidence            9999999999999999 899999999999999998864   5568999999999999999999976542          2


Q ss_pred             eeCCCchh---------hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhH
Q 020296          225 GNISPDDI---------LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM  295 (328)
Q Consensus       225 ~~r~~~d~---------~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~  295 (328)
                      .+|-...+         .+.+.-+.+.....+.+=.+ ++..      -..-|+++.+++.-+  + .++||.|||..+|
T Consensus       289 ~~RP~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~I-V~~~------~~~iI~~~~L~~~~~--s-~~DiY~~G~~~~M  358 (385)
T KOG3378|consen  289 SSRPFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQI-VDEV------MTRIINEEDLEKLDL--S-ECDIYMLGPNNYM  358 (385)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh-hhhh------hhhhcCHHHhhhcCh--h-hCceeeeCcHHHH
Confidence            22211100         00011111111111111111 1110      123456666665432  2 4899999999999


Q ss_pred             HhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          296 KHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       296 ~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      +.+.             +-|+++|+.++.|+.
T Consensus       359 ~~~~-------------~~L~~L~~~~~~v~~  377 (385)
T KOG3378|consen  359 RFVK-------------QELVKLGVEPNKVQS  377 (385)
T ss_pred             HHHH-------------HHHHHhcCCccceec
Confidence            9997             999999999998874

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.87  E-value=4e-22  Score=155.84  Aligned_cols=105  Identities=40%  Similarity=0.797  Sum_probs=90.5

Q ss_pred             EEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHH
Q 020296          193 MIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKD  271 (328)
Q Consensus       193 lIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~  271 (328)
                      ||||||||||+++|+++++++ +...+|+|+|++|+.+|+++.++|+++++++++ +++..+ +..+.+|.+..|+++..
T Consensus         1 lIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~   78 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLER-NDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDL   78 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHH-TCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHH
T ss_pred             CeecceeHHHHHHHHHHHHHh-CCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHH
Confidence            799999999999999999976 456899999999999999999999999999998 777666 66677888999999977


Q ss_pred             HHhhcCC--CCCCCcEEEEECChhhHHhhh
Q 020296          272 TALKGLP--SPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       272 ~l~~~~~--~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      ++++.+.  ....+..||+|||++|+++++
T Consensus        79 ~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~  108 (109)
T PF00175_consen   79 LLEDLLPEKIDPDDTHVYICGPPPMMKAVR  108 (109)
T ss_dssp             HHHHHHHHHHCTTTEEEEEEEEHHHHHHHH
T ss_pred             HHHhhcccccCCCCCEEEEECCHHHHHHhc
Confidence            7666554  122468999999999999986

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=99.86  E-value=3.5e-21  Score=148.09  Aligned_cols=98  Identities=35%  Similarity=0.678  Sum_probs=89.1

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK  158 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~  158 (328)
                      +++|+++++++++++.|+|++++ .....+.||||+.++++..      +....|+|||++.+.+.+.++|+||.+++|.
T Consensus         1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~------~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~   74 (99)
T PF00970_consen    1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPIN------GKQVSRPYSPASSPDDKGYLEFAIKRYPNGR   74 (99)
T ss_dssp             EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEET------TEEEEEEEEBCSSTTSSSEEEEEEEECTTSH
T ss_pred             CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccC------CcceecceeEeeecCCCCcEEEEEEeccCCH
Confidence            47999999999999999999996 5568899999999999854      6779999999999998899999999999999


Q ss_pred             cchhhhcCCCCCEEEEEceeecccc
Q 020296          159 MSQHFASLKPGDVVEVKGPIEKLRY  183 (328)
Q Consensus       159 ~S~~L~~l~~Gd~v~v~GP~G~~~~  183 (328)
                      +|+||+++++||+|.++||+|+|.|
T Consensus        75 ~S~~L~~l~~Gd~v~i~gP~G~f~y   99 (99)
T PF00970_consen   75 VSRYLHQLKPGDEVEIRGPYGNFTY   99 (99)
T ss_dssp             HHHHHHTSCTTSEEEEEEEESSEEE
T ss_pred             HHHHHHhCCCCCEEEEEEcccccCC
Confidence            9999999999999999999999864

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=99.80  E-value=4.2e-19  Score=174.21  Aligned_cols=162  Identities=23%  Similarity=0.289  Sum_probs=128.6

Q ss_pred             cccccccCCcCCCCC-CeEEEEEEEe--------CCCccchhhhcCCC-CCEEEEEceee-ccccCCCCCceEEEEecCc
Q 020296          130 YVVRPYTPISDTEAK-GHFDLLIKVY--------PEGKMSQHFASLKP-GDVVEVKGPIE-KLRYSPNMKKHIGMIAGGT  198 (328)
Q Consensus       130 ~~~RpYTi~s~~~~~-~~l~l~Vk~~--------~~G~~S~~L~~l~~-Gd~v~v~GP~G-~~~~~~~~~~~ivlIAgGt  198 (328)
                      ...|-|||+|++... ++++++|..+        ..|.+|.||+++.+ ||+|.+....+ +|.++.+...+|+|||.||
T Consensus       371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GT  450 (587)
T COG0369         371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGT  450 (587)
T ss_pred             CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCC
Confidence            478999999998754 6677766543        23778999997666 99999887666 7999887779999999999


Q ss_pred             cHHHHHHHHHHHHhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH-----
Q 020296          199 GITPMLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT-----  272 (328)
Q Consensus       199 GItP~~~ll~~l~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~-----  272 (328)
                      ||||+++++++...+.. ..+++||||+|+ ..|++|.+|++++.+..-.+++....++++.    .+-||+..+     
T Consensus       451 GIAPFRafvq~r~~~~~-~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~----~KiYVQd~lre~~d  525 (587)
T COG0369         451 GIAPFRAFVQERAANGA-EGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE----EKIYVQDRLREQAD  525 (587)
T ss_pred             CchhHHHHHHHHHhccc-cCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC----CCccHHHHHHHhHH
Confidence            99999999999887743 358999999999 7799999999999887556888888888753    345565322     


Q ss_pred             -HhhcCCCCCCCcEEEEEC-ChhhHHhhh
Q 020296          273 -ALKGLPSPSDDALILVCG-PPGMMKHVS  299 (328)
Q Consensus       273 -l~~~~~~~~~~~~v~vCG-P~~m~~~v~  299 (328)
                       |.+.+.   +...+|||| ...|.+.|.
T Consensus       526 el~~~l~---~ga~~YVCGd~~~Ma~dV~  551 (587)
T COG0369         526 ELWEWLE---EGAHIYVCGDAKGMAKDVE  551 (587)
T ss_pred             HHHHHHH---CCCEEEEeCCCccchHHHH
Confidence             223332   348999999 899999997

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=1.1e-18  Score=174.72  Aligned_cols=214  Identities=15%  Similarity=0.226  Sum_probs=154.2

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      ...+++.++.-++.|+..+++.-|+  ...++||||+++.+|.-      ...++|||||+|+| +++++.++||..  |
T Consensus       354 ~~~~~i~~~~llp~~vi~L~~~Kp~--~f~y~~Gqyifv~~p~l------s~~qwHPFTItSsp-~dd~lsvhIk~~--g  422 (646)
T KOG0039|consen  354 QKNVKIAKVVLLPSDVLELIMSKPP--GFKYKPGQYIFVNCPSL------SKLEWHPFTITSAP-EDDFLSVHIKAL--G  422 (646)
T ss_pred             hcCceEEEEEEcCCCeEEEEEeCCC--CCCCCCCCEEEEECccc------cccccCCceeecCC-CCCEEEEEEEec--C
Confidence            3458999999999999999998774  57899999999998876      78899999999999 679999999998  8


Q ss_pred             ccchhhhc-CC------------CCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCC---------
Q 020296          158 KMSQHFAS-LK------------PGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPD---------  215 (328)
Q Consensus       158 ~~S~~L~~-l~------------~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~---------  215 (328)
                      ++|+.|.+ +.            ..-++.|+||||.-..+-..++.++||+||+|+||+.+++++++.+-+         
T Consensus       423 ~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~  502 (646)
T KOG0039|consen  423 DWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTS  502 (646)
T ss_pred             cHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccc
Confidence            99999973 32            144799999999865555678899999999999999999999985322         


Q ss_pred             ------CCCeEEEEEeeCCCchh-hhHHHHHHHHHhCC--CeEEEEEEeCCC----CCC-------------------C-
Q 020296          216 ------DNTQVSLLYGNISPDDI-LLKQKLDILAASHP--NLKVFYTVDNPT----KNW-------------------K-  262 (328)
Q Consensus       216 ------~~~~i~L~~~~r~~~d~-~~~~el~~l~~~~~--~~~v~~~~~~~~----~~~-------------------~-  262 (328)
                            ...++..+|.+|...+. .+.+.+.++...+.  -.+++.+++..-    ..+                   . 
T Consensus       503 ~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g  582 (646)
T KOG0039|consen  503 DYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTG  582 (646)
T ss_pred             cccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccccc
Confidence                  12468999998876665 45555555553321  145555544210    000                   0 


Q ss_pred             ----CcccccCH-HHHhhcCCCC-CCCcEEEEECChhhHHhhhccc
Q 020296          263 ----GGVGYISK-DTALKGLPSP-SDDALILVCGPPGMMKHVSGEK  302 (328)
Q Consensus       263 ----g~~g~i~~-~~l~~~~~~~-~~~~~v~vCGP~~m~~~v~g~~  302 (328)
                          -+.||.+- +.+++..... .....|++|||+.|.+.++..+
T Consensus       583 ~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~  628 (646)
T KOG0039|consen  583 LKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLC  628 (646)
T ss_pred             ceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHH
Confidence                12234432 2233222211 1127899999999999998433

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=99.75  E-value=7.2e-18  Score=165.49  Aligned_cols=166  Identities=23%  Similarity=0.321  Sum_probs=123.1

Q ss_pred             cccccccCCcCCC-CCCeEEEEEE--EeCC--------CccchhhhcCCCCCEEEEEceeec--cccCCCCCceEEEEec
Q 020296          130 YVVRPYTPISDTE-AKGHFDLLIK--VYPE--------GKMSQHFASLKPGDVVEVKGPIEK--LRYSPNMKKHIGMIAG  196 (328)
Q Consensus       130 ~~~RpYTi~s~~~-~~~~l~l~Vk--~~~~--------G~~S~~L~~l~~Gd~v~v~GP~G~--~~~~~~~~~~ivlIAg  196 (328)
                      ...|+|||+|++. ..+.+++++-  .++.        |..|+||.++++|+.+..-+|.+.  |.++++...+++|||-
T Consensus       420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~PiIMIGp  499 (645)
T KOG1158|consen  420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPSTPIIMIGP  499 (645)
T ss_pred             ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceecCCCCCCcEEEEcC
Confidence            4889999999774 3455665543  3322        778999999999999986556664  6677677789999999


Q ss_pred             CccHHHHHHHHHHHHhCCCC----CCeEEEEEeeCCCchh-hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCH-
Q 020296          197 GTGITPMLQVIEAILKNPDD----NTQVSLLYGNISPDDI-LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISK-  270 (328)
Q Consensus       197 GtGItP~~~ll~~l~~~~~~----~~~i~L~~~~r~~~d~-~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~-  270 (328)
                      ||||||+++++++......+    ..-++||||+|+.++. +|.+|++++.+..-++++....++.+.   +.+-|++. 
T Consensus       500 GTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~---~~k~YVQd~  576 (645)
T KOG1158|consen  500 GTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQT---PKKIYVQDR  576 (645)
T ss_pred             CCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCC---CCceehhhH
Confidence            99999999999998754221    1228999999988765 999999999766555888888888753   23344442 


Q ss_pred             -----HHHhhcCCCCCCCcEEEEECChh-hHHhhhc
Q 020296          271 -----DTALKGLPSPSDDALILVCGPPG-MMKHVSG  300 (328)
Q Consensus       271 -----~~l~~~~~~~~~~~~v~vCGP~~-m~~~v~g  300 (328)
                           +.+.+.+..  ++.++||||+.. |.++|..
T Consensus       577 l~e~~d~v~~~L~~--~~g~iYvCGd~~~Ma~dV~~  610 (645)
T KOG1158|consen  577 LREYADEVWELLKK--EGGHIYVCGDAKGMAKDVQD  610 (645)
T ss_pred             HHHHHHHHHHHHhc--CCcEEEEecCCccchHHHHH
Confidence                 223333322  368999999999 9999963

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=99.69  E-value=3.8e-15  Score=131.49  Aligned_cols=218  Identities=16%  Similarity=0.198  Sum_probs=164.8

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCC-cccceEEEEEecCCCCC--------------CCCCccccccccCC
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLG-LDVASCILTRAPLGQDA--------------EGNTKYVVRPYTPI  138 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~-~~~Gq~v~l~~~~~~~~--------------~~~~~~~~RpYTi~  138 (328)
                      ....+.++|+.++++|++..+++|.-+. ..... ....||+.+.++.+...              ++......|.|||.
T Consensus        14 ~~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR   93 (265)
T COG2375          14 GPRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIR   93 (265)
T ss_pred             cccceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceee
Confidence            3456789999999999999999999887 22223 34455999999876321              01123579999999


Q ss_pred             cCCCCCCeEEEEEEEe-CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCC
Q 020296          139 SDTEAKGHFDLLIKVY-PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDN  217 (328)
Q Consensus       139 s~~~~~~~l~l~Vk~~-~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~  217 (328)
                      +.+.+.++|.+-+-.+ ++|..|+|..+.++||+|.|.||.|.+..+ ...+.++||+.-|++..+..+|+++...    
T Consensus        94 ~~d~~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~p~-~~~~~~lLigDetAlPAIa~iLE~lp~~----  168 (265)
T COG2375          94 AVDAAAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLVPP-EAADWYLLIGDETALPAIARILETLPAD----  168 (265)
T ss_pred             eecccccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCCCC-CCcceEEEeccccchHHHHHHHHhCCCC----
Confidence            8887889999988877 889999999999999999999999996554 4578999999999999999999987654    


Q ss_pred             CeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcC---CCCCCCcEEEEECChhh
Q 020296          218 TQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGL---PSPSDDALILVCGPPGM  294 (328)
Q Consensus       218 ~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~---~~~~~~~~v~vCGP~~m  294 (328)
                      .+.+.+..+.+.+|.   ++   +. ..++++++++......         +..++...+   ..+.....||+.|...+
T Consensus       169 ~~~~a~lev~d~ad~---~~---l~-~~~~l~~~Wl~r~~~~---------~~~ll~~a~~~~~~P~~~~~vwiagE~~~  232 (265)
T COG2375         169 TPAEAFLEVDDAADR---DE---LP-SPDDLELEWLARDDAP---------TEQLLAAALAQAALPAGDYYVWIAGEASA  232 (265)
T ss_pred             CceEEEEEeCChHHh---hc---cC-CCCceeEEEecCCCcc---------chHHHHHHHhcccCCCCceEEEEeccHHH
Confidence            567888888877764   22   21 1244888888654321         334444333   23334579999999999


Q ss_pred             HHhhhcccccCCCcchHHHHHh-hcCCCCCCeE
Q 020296          295 MKHVSGEKAKDYSQGELSGILK-DLGYTEQMVY  326 (328)
Q Consensus       295 ~~~v~g~~~~~~~qg~~~~~L~-~~G~~~~~I~  326 (328)
                      ++.++             ..|+ +.|++++.|+
T Consensus       233 v~~~R-------------k~L~~e~g~dk~~i~  252 (265)
T COG2375         233 VKAIR-------------KFLRNERGFDKSRVR  252 (265)
T ss_pred             HHHHH-------------HHHhhhcCCCHHHhh
Confidence            99998             6666 5699998875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.64  E-value=7.1e-15  Score=150.13  Aligned_cols=133  Identities=13%  Similarity=0.149  Sum_probs=104.1

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      -...+|++++.++++++.++++.|. ....++||||++++.+...   .......||+|+.+.+.+.|.++|+++..  |
T Consensus       790 ~l~~~Vv~~~~lap~i~~L~l~aP~-iA~~~kPGQFVmL~~~~~g---~~~l~~p~P~SI~~vD~e~g~It~i~rvV--G  863 (1028)
T PRK06567        790 LLTSRVNKINILDDKTFELIIHSPL-AAKNFKFGQFFRLQNYSED---AAKLIEPVALSPIDIDVEKGLISFIVFEV--G  863 (1028)
T ss_pred             hhceEEEEEEEecCCEEEEEEeCcc-hhhcCCCCceEEEEeCCCC---CccccCceeEEeeccCCCCCEEEEEEEEE--C
Confidence            3468999999999999999999875 2235789999999974320   00112457899999888889999999999  9


Q ss_pred             ccchhhhcCCCCCEEEEEceeec-cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEE
Q 020296          158 KMSQHFASLKPGDVVEVKGPIEK-LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY  224 (328)
Q Consensus       158 ~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~  224 (328)
                      ..|+.|+++++||.|.+.||+|+ |..+  ..+++++||||+|++|   +++++.+.+   .+|..|.
T Consensus       864 kgT~~Ls~l~~Gd~v~v~GPLG~pF~i~--~~k~vLLVgGGVGiAp---Lak~Lk~~G---~~V~~~~  923 (1028)
T PRK06567        864 KSTSLCKTLSENEKVVLMGPTGSPLEIP--QNKKIVIVDFEVGNIG---LLKVLKENN---NEVIFVT  923 (1028)
T ss_pred             hHHHHHhcCCCCCEEEEEcccCCCCCCC--CCCeEEEEEccccHHH---HHHHHHHCC---CeEEEEE
Confidence            99999999999999999999997 5443  2478999999999997   556665543   3454444

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=99.56  E-value=1.5e-14  Score=135.03  Aligned_cols=157  Identities=24%  Similarity=0.386  Sum_probs=114.8

Q ss_pred             cccccccCCcCCCCCCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccH
Q 020296          130 YVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGI  200 (328)
Q Consensus       130 ~~~RpYTi~s~~~~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGI  200 (328)
                      ...|.|||+|.+.. -.++|+|-.+         ..|-+|+||++|++|++|.+.---|.+.++.+...+++||+-||||
T Consensus       366 IrPR~fSIas~~~~-~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p~~~~~PlImVGPGTGv  444 (574)
T KOG1159|consen  366 IRPRAFSIASSPGA-HHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFPSDLNKPLIMVGPGTGV  444 (574)
T ss_pred             cccceeeeccCCCC-CceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccCCCCCCCeEEEcCCCCc
Confidence            46799999999875 4488766432         4699999999999999998887778877776667899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCeEEEEEeeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCH------HHH
Q 020296          201 TPMLQVIEAILKNPDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISK------DTA  273 (328)
Q Consensus       201 tP~~~ll~~l~~~~~~~~~i~L~~~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~------~~l  273 (328)
                      ||+++++++..-+.  .....||||||+.+ |.+|.+|+.++.+.    .++...+++++.    +-||+.      +.+
T Consensus       445 APfRa~i~er~~q~--~~~~~lFfGCR~K~~Df~y~~eW~~~~~~----~~~~AFSRDqe~----kvYVQh~i~e~g~~v  514 (574)
T KOG1159|consen  445 APFRALIQERIYQG--DKENVLFFGCRNKDKDFLYEDEWTELNKR----AFHTAFSRDQEQ----KVYVQHKIRENGEEV  514 (574)
T ss_pred             ccHHHHHHHHHhhc--cCCceEEEecccCCccccccchhhhhhcc----hhhhhccccccc----ceeHHHHHHHhhHHH
Confidence            99999999977432  24558999999876 78888888777653    334444555442    234431      122


Q ss_pred             hhcCCCCCCCcEEEEECCh-hhHHhhh
Q 020296          274 LKGLPSPSDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       274 ~~~~~~~~~~~~v~vCGP~-~m~~~v~  299 (328)
                      .+.+.+  .+..|||||+. .|-.+|+
T Consensus       515 ~~Ll~~--~gA~~fvaGsS~~MP~~V~  539 (574)
T KOG1159|consen  515 WDLLDN--LGAYFFVAGSSGKMPKDVK  539 (574)
T ss_pred             HHHHhc--cCCEEEEecCCCCCcHHHH
Confidence            222222  36899999997 6767765

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.53  E-value=2.1e-14  Score=119.43  Aligned_cols=112  Identities=22%  Similarity=0.410  Sum_probs=70.3

Q ss_pred             CceEEEEecCccHHHHHHHHHHHHhCC----CCCCeEEEEEeeCCCchh-hhHHHHHHHHHhC--CCeEEEEEEeCCCCC
Q 020296          188 KKHIGMIAGGTGITPMLQVIEAILKNP----DDNTQVSLLYGNISPDDI-LLKQKLDILAASH--PNLKVFYTVDNPTKN  260 (328)
Q Consensus       188 ~~~ivlIAgGtGItP~~~ll~~l~~~~----~~~~~i~L~~~~r~~~d~-~~~~el~~l~~~~--~~~~v~~~~~~~~~~  260 (328)
                      +++++|||||+||||+++++++++...    ...++|+|+|.+|+.+++ ++.++|+++....  .+++++.++++....
T Consensus         1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~   80 (156)
T PF08030_consen    1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA   80 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred             CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence            478999999999999999999997532    235789999999999987 4554555443322  358888888764321


Q ss_pred             C-------------------------------CCcccccCH-HHHhhc-CCCCCCCcEEEEECChhhHHhhh
Q 020296          261 W-------------------------------KGGVGYISK-DTALKG-LPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       261 ~-------------------------------~g~~g~i~~-~~l~~~-~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      .                               .-..||.+- +++.+. .........|++|||++|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr  152 (156)
T PF08030_consen   81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVR  152 (156)
T ss_dssp             ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHH
T ss_pred             ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHH
Confidence            0                               112344443 333333 12233568999999999999997

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=99.15  E-value=1.8e-10  Score=90.91  Aligned_cols=100  Identities=19%  Similarity=0.212  Sum_probs=65.4

Q ss_pred             EEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCC---------------CCCccccccccCCcCCCCCC
Q 020296           82 KLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAE---------------GNTKYVVRPYTPISDTEAKG  145 (328)
Q Consensus        82 ~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~---------------~~~~~~~RpYTi~s~~~~~~  145 (328)
                      +|++++.+++++.+++|..+. .......+++++.|.++.+....               .......|.||+.+.+.+.+
T Consensus         1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~   80 (117)
T PF08021_consen    1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG   80 (117)
T ss_dssp             EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred             CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence            689999999999999999887 33344579999999998763221               11124789999999988889


Q ss_pred             eEEEEEEEeCC-CccchhhhcCCCCCEEEEEceeecc
Q 020296          146 HFDLLIKVYPE-GKMSQHFASLKPGDVVEVKGPIEKL  181 (328)
Q Consensus       146 ~l~l~Vk~~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~  181 (328)
                      +++|-+-.+.+ |..++|..++++||+|.|.||.|.|
T Consensus        81 ~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~~  117 (117)
T PF08021_consen   81 ELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGSF  117 (117)
T ss_dssp             EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE---
T ss_pred             EEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence            99998888866 8999999999999999999999986

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.13  E-value=4.2e-12  Score=98.51  Aligned_cols=91  Identities=14%  Similarity=0.179  Sum_probs=6.4

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC--ccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT--KYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~--~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      .+++.+++.+.+++.++++..+.. ...+.||||++|+++..      .  .+++|||||++.+. .+.+.|+||..  |
T Consensus         3 ~~~~~~v~~~~~~~v~i~i~~~~~-~~~~~pGq~v~l~~p~~------s~~~~q~HPFTIas~~~-~~~i~l~ik~~--g   72 (105)
T PF08022_consen    3 NVRIASVELLPDDVVEITIPKPSS-PFKWKPGQYVFLSFPSI------SKWFWQWHPFTIASSPE-DNSITLIIKAR--G   72 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEEEcCCCEEEEEEECCCC-CCCCCCceEEEEEEcCc------CcCcccccccEeeccCC-CCEEEEEEEeC--C
Confidence            467888899999999888887742 28899999999999765      5  45999999999987 68999999998  8


Q ss_pred             ccchhhhcC--------CCCCEEEEEceeec
Q 020296          158 KMSQHFASL--------KPGDVVEVKGPIEK  180 (328)
Q Consensus       158 ~~S~~L~~l--------~~Gd~v~v~GP~G~  180 (328)
                      .+|+.|.+.        ..+-++.|+||||.
T Consensus        73 ~~T~~L~~~~~~~~~~~~~~~~v~idGPYG~  103 (105)
T PF08022_consen   73 GWTKRLYEHLSESPSKQGNRLRVFIDGPYGA  103 (105)
T ss_dssp             ------------------------TTSTTSH
T ss_pred             CchHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence            899998753        24457889999996

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins

Probab=97.70  E-value=0.00029  Score=55.72  Aligned_cols=110  Identities=15%  Similarity=0.284  Sum_probs=68.1

Q ss_pred             ceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccccc
Q 020296          189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYI  268 (328)
Q Consensus       189 ~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i  268 (328)
                      ++++|+|.-|++..+..+++++...    .+++++..+.+.+|...   |..    .++++++++.....    ...+..
T Consensus         2 ~~~ll~gDeTalPAi~~iLe~lp~~----~~~~v~iev~~~~d~~~---l~~----~~~~~v~wv~r~~~----~~~~~~   66 (119)
T PF04954_consen    2 DRYLLVGDETALPAIARILEALPAD----APGTVFIEVPDEADRQP---LPA----PAGVEVTWVPRDGP----AAQGSA   66 (119)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHS-TT-----EEEEEEEESSGGG--------------TEEEEEEEE-SS------TT-HH
T ss_pred             ceEEEEeccccHHHHHHHHHhCCCC----CeEEEEEEECChHhccc---CCC----CCCCEEEEEeCCCC----CchHHH
Confidence            5789999999999999999987432    68888888888777432   222    34589988875543    011111


Q ss_pred             CHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHh-hcCCCCCCeEe
Q 020296          269 SKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILK-DLGYTEQMVYK  327 (328)
Q Consensus       269 ~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~-~~G~~~~~I~~  327 (328)
                      -.+.+.. +..+..+..+|++|...+++.++             ..|. ++|+++++|+-
T Consensus        67 l~~al~~-~~~~~~~~~vW~AgE~~~~r~lR-------------~~l~~~~g~~~~~~~~  112 (119)
T PF04954_consen   67 LADALRD-LPLPAGDGYVWVAGEASAVRALR-------------RHLREERGLPRDRIYA  112 (119)
T ss_dssp             HHHHHTT-S---SS-EEEEEEEEHHHHHHHH-------------HHHHHH----GGGEEE
T ss_pred             HHHHHHH-hhccCCCeEEEEEecHHHHHHHH-------------HHHHHhhCCCHHHeEE
Confidence            1223333 33334579999999999999999             6665 88999999873

; PDB: 2GPJ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
2eix_A	243	The Structure Of Physarum Polycephalum Cytochrome B		9e-51
1ndh_A	272	Crystal Structure Of Nadh-Cytochrome B5 Reductase F		9e-37
1umk_A	275	The Structure Of Human Erythrocyte Nadh-Cytochrome		1e-36
1ib0_A	274	Crystal Structure Of Rat B5r In Complex With Fad An		4e-34
1qx4_A	274	Structrue Of S127p Mutant Of Cytochrome B5 Reductas		2e-33
1cnf_A	270	Structural Studies On Corn Nitrate Reductase: Refin		1e-31
1cne_A	270	Structural Studies On Corn Nitrate Reductase: Refin		2e-30
1tvc_A	250	Fad And Nadh Binding Domain Of Methane Monooxygenas		3e-10
2r6h_A	290	Crystal Structure Of The Domain Comprising The Nad		2e-06
2rc5_A	314	Refined Structure Of Fnr From Leptospira Interrogan		2e-05
1krh_A	338	X-Ray Stucture Of Benzoate Dioxygenase Reductase Le		7e-05
2vyq_A	304	Ferredoxin:nadp Reductase Mutant With Thr 155 Repla		2e-04
2bmw_A	304	Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl		3e-04
1h42_A	304	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		3e-04
3ozu_A	403	The Crystal Structure Of Flavohemoglobin From R. Eu		7e-04
1cqx_A	403	Crystal Structure Of The Flavohemoglobin From Alcal		8e-04

>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5 Reductase Length = 243

Iteration: 1
 Score =  197 bits (500), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 20/258 (7%)
Query: 72  ALNPDKWIGFKLQDTARVSHNSHLFRFSFD-PSAKLGLDVASCILTRAPLGQDAEGNTKY 130
           ALNP+++  F L++   ++HN+ LFRF+   P   +GL +   +  +A +      + K 
Sbjct: 5   ALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATV------DGKE 58
Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKH 190
           + RPYTP+S  + KG+FDL+IKVY +G+MSQ+   L PGD ++V+GP  +  Y PNM K 
Sbjct: 59  IYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKE 118
Query: 191 IGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPXXXXXXXXXXXXAASHPNLKV 250
           +GMIAGGTGITPMLQV  AI+KNP + T ++L++ N++             A  + N KV
Sbjct: 119 MGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILLRTELDDMAKKYSNFKV 178
Query: 251 FYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGE 310
           +Y ++NP   W GGVG++S D   +    PS D  +++CGPP M K + G          
Sbjct: 179 YYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMMNKAMQGH--------- 229
Query: 311 LSGILKDLGYTEQMVYKF 328
               L+ LGYT +  + F
Sbjct: 230 ----LETLGYTPEQWFIF 243

>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig Liver At 2.4 Angstroms Resolution Length = 272

Iteration: 1
 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 138/259 (53%), Gaps = 34/259 (13%)
Query: 67  TDPKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDA 124
           + P I L NPD     +L D   V+H++  FRF+   P   LGL V   I     L    
Sbjct: 1   STPAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHILGLPVGQHIY----LSARI 56
Query: 125 EGNTKYVVRPYTPISDTEAKGHFDLLIKVY-----PE----GKMSQHFASLKPGDVVEVK 175
           +GN   V+RPYTP+S  + KG  DL+IKVY     P+    GKMSQ+  S+K GD +E +
Sbjct: 57  DGN--LVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFR 114
Query: 176 GPIEKLRY--------------SPNMK--KHIGMIAGGTGITPMLQVIEAILKNPDDNTQ 219
           GP   L Y              SP +K  K +GMIAGGTGITPMLQVI AI+K+PDD+T 
Sbjct: 115 GPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV 174
Query: 220 VSLLYGNISPXXXXXXXXXXXXAASH-PNLKVFYTVDNPTKNWKGGVGYISKDTALKGLP 278
             LL+ N +                H    K++YTVD   + W    G+++++     LP
Sbjct: 175 CHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLP 234
Query: 279 SPSDDALILVCGPPGMMKH 297
            P ++ L+L+CGPP M+++
Sbjct: 235 PPEEEPLVLMCGPPPMIQY 253

>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5 Reductase Length = 275

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/261 (37%), Positives = 140/261 (53%), Gaps = 34/261 (13%)
Query: 65  EETDPKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQ 122
           + + P I L +PD     +L D   +SH++  FRF+   P   LGL V   I   A +  
Sbjct: 2   QRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARI-- 59
Query: 123 DAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY-----PE----GKMSQHFASLKPGDVVE 173
             +GN   VVRPYTPIS  + KG  DL+IKVY     P+    GKMSQ+  S++ GD +E
Sbjct: 60  --DGN--LVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIE 115
Query: 174 VKGPIEKLRYS--------PNMK--------KHIGMIAGGTGITPMLQVIEAILKNPDDN 217
            +GP   L Y         P+ K        K +GMIAGGTGITPMLQVI AI+K+PDD+
Sbjct: 116 FRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDH 175
Query: 218 TQVSLLYGNISPXXXXXXXXXXXXAASH-PNLKVFYTVDNPTKNWKGGVGYISKDTALKG 276
           T   LL+ N +                H    K++YT+D   + W  G G+++++     
Sbjct: 176 TVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDH 235
Query: 277 LPSPSDDALILVCGPPGMMKH 297
           LP P ++ L+L+CGPP M+++
Sbjct: 236 LPPPEEEPLVLMCGPPPMIQY 256

>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad Length = 274

Iteration: 1
 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 128/250 (51%), Gaps = 33/250 (13%)
Query: 74  NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVV 132
           NPD     +L D   +SH++  FRF+   P   LGL +   I     L    +GN   V+
Sbjct: 11  NPDIKYPLRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIY----LSTRIDGN--LVI 64
Query: 133 RPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY 183
           RPYTP+S  + KG  DL++KVY +         GKMSQ+  ++  GD +E +GP   L Y
Sbjct: 65  RPYTPVSSDDDKGFVDLVVKVYFKETHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVY 124
Query: 184 SPNMK----------------KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNI 227
               K                K +GMIAGGTGITPMLQVI A+LK+P+D+T   LL+ N 
Sbjct: 125 QGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQ 184
Query: 228 SPXXXXXXXXXXXXAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALI 286
           S                H +  K++YTVD     W    G+++++     LP P ++ LI
Sbjct: 185 SEKDILLRPELEELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPGEETLI 244
Query: 287 LVCGPPGMMK 296
           L+CGPP M++
Sbjct: 245 LMCGPPPMIQ 254

>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase Length = 274

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 128/250 (51%), Gaps = 33/250 (13%)
Query: 74  NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVV 132
           NPD     +L D   +SH++  FRF+   P   LGL +   I     L    +GN   V+
Sbjct: 11  NPDIKYPLRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIY----LSTRIDGN--LVI 64
Query: 133 RPYTPISDTEAKGHFDLLIKVY-----PE----GKMSQHFASLKPGDVVEVKGPIEKLRY 183
           RPYTP+S  + KG  DL++KVY     P+    GKM Q+  ++  GD +E +GP   L Y
Sbjct: 65  RPYTPVSSDDDKGFVDLVVKVYFKETHPKFPAGGKMPQYLENMNIGDTIEFRGPNGLLVY 124
Query: 184 SPNMK----------------KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNI 227
               K                K +GMIAGGTGITPMLQVI A+LK+P+D+T   LL+ N 
Sbjct: 125 QGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQ 184
Query: 228 SPXXXXXXXXXXXXAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALI 286
           S                H +  K++YTVD     W    G+++++     LP P ++ LI
Sbjct: 185 SEKDILLRPELEELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPGEETLI 244
Query: 287 LVCGPPGMMK 296
           L+CGPP M++
Sbjct: 245 LMCGPPPMIQ 254

>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined Structure Of The Cytochrome B Reductase Fragment At 2.5 Angstroms, Its Adp Complex And An Active Site Mutant And Modeling Of The Cytochrome B Domain Length = 270

Iteration: 1
 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 129/248 (52%), Gaps = 31/248 (12%)
Query: 74  NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVV 132
           NP   I  +L     +S +  LFRFS   P   LGL +   I   A +    EG  K  +
Sbjct: 8   NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATI----EG--KLCM 61
Query: 133 RPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY 183
           R YTP S  +  GHFDLL+KVY +         G M+Q+  SL  G  ++VKGP+  + Y
Sbjct: 62  RAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEY 121
Query: 184 S----------PNMKKHIGMIAGGTGITPMLQVIEAILKN-PDDNTQVSLLYGNISPXXX 232
           +              + + MI GG+GITPM Q+I+A+L++ P+D+T++ L+Y N +    
Sbjct: 122 TGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDI 181
Query: 233 XXXXXXXXXAASHPN-LKVFYTVDN---PTKNWKGGVGYISKDTALKGLPSPSDDALILV 288
                    AA +P+ LKV+Y +D    P + WK  VG++++    + +P   DD L L 
Sbjct: 182 LLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALA 241
Query: 289 CGPPGMMK 296
           CGPP M++
Sbjct: 242 CGPPPMIQ 249

>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined Structure Of The Cytochrome B Reductase Fragment At 2.5 Angstroms, Its Adp Complex And An Active Site Mutant And Modeling Of The Cytochrome B Domain Length = 270

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 128/248 (51%), Gaps = 31/248 (12%)
Query: 74  NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVV 132
           NP   I  +L     +S +  LFRFS   P   LGL +   I   A +    EG  K  +
Sbjct: 8   NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATI----EG--KLCM 61
Query: 133 RPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY 183
           R YTP S  +  GHFDLL+KVY +         G M+Q+  SL  G  ++VKGP+  + Y
Sbjct: 62  RAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEY 121
Query: 184 S----------PNMKKHIGMIAGGTGITPMLQVIEAILKN-PDDNTQVSLLYGNISPXXX 232
           +              + + MI GG+GITPM Q+I+A+L++ P+D+T++ L+Y N +    
Sbjct: 122 TGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDI 181
Query: 233 XXXXXXXXXAASHPN-LKVFYTVDN---PTKNWKGGVGYISKDTALKGLPSPSDDALILV 288
                    AA +P+ LKV+Y +D    P + WK  VG++++    + +P   DD L L 
Sbjct: 182 LLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALA 241
Query: 289 CGPPGMMK 296
            GPP M++
Sbjct: 242 SGPPPMIQ 249

>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase Reductase From Methylococcus Capsulatus (Bath) Length = 250

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 3/166 (1%)
Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKK 189
           V R Y+P +    +G  + LI+V PEG+ S +  +  + G V+ VKGP+           
Sbjct: 59  VSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMA 118
Query: 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPXXXXXXXXXXXXAASHPNLK 249
               +AGGTG+ P++ ++  + +    N +  + +G  +               S  NL 
Sbjct: 119 PRYFVAGGTGLAPVVSMVRQMQEWTAPN-ETRIYFGVNTEPELFYIDELKSLERSMRNLT 177
Query: 250 VFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295
           V   V +P+ +W+G  G    D   + L S   +  I +CGPPGM+
Sbjct: 178 VKACVWHPSGDWEGEQGS-PIDALREDLESSDANPDIYLCGPPGMI 222

>pdb|2R6H|A Chain A, Crystal Structure Of The Domain Comprising The Nad Binding And The Fad Binding Regions Of The Nadh:ubiquinone Oxidoreductase, Na Translocating, F Subunit From Porphyromonas Gingivalis Length = 290

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 55/149 (36%), Gaps = 7/149 (4%)
Query: 157 GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDD 216
           G  S +  SLKPGD V   GP           + +  I GG G  P+   I  + +    
Sbjct: 126 GISSSYIFSLKPGDKVXXSGPYGDFHIQDTDAEXL-YIGGGAGXAPLRAQILHLFRTLKT 184
Query: 217 NTQVSLLYGNISPXXXXXXXXXXXXAASHPNLKVFYTVDNPT--KNWKGGVGYISK---D 271
             +VS  YG  S                 PN K    + +P    NW G VG+I +   D
Sbjct: 185 GRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIYD 244
Query: 272 TALKGLPSPSDDALILVCGPPGMMKHVSG 300
             LK   +P +D     CGP      V G
Sbjct: 245 NYLKDHDAP-EDIEYYXCGPGPXANAVKG 272

>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 119 PLGQDAEGNTK------YVVRPYTPISDTEAKG----HFDLLIK---VYPE-------GK 158
           P G+D E   K      Y VR Y+  S + + G    + + +IK   +Y E       G 
Sbjct: 74  PPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGV 133
Query: 159 MSQHFASLKPGDVVEVKGPIEKLRYSPN--MKKHIGMIAGGTGITPMLQVIEAILKNP-- 214
            S +   LKPGD V + GP  K    PN      I  +A GTGI P + + E +L++   
Sbjct: 134 CSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLI 193
Query: 215 DDNTQVSLLYGNISPXXXXXXXXXXXXAASHPNLKVFYTVDNPTKN-WKGGVGYIS---K 270
                ++L+YG                 + H N K+   +    KN + GG  YIS   +
Sbjct: 194 KFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVR 253
Query: 271 DTALKGLPSPSDDALILVC-GPPGMMKHVSGEKAK 304
           + A       +      +C GP GM K V  E  K
Sbjct: 254 EQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQK 288

>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase Length = 338

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 149 LLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVI 207
            +++  P+GKMS++ +   K GD +   GP     Y  ++K+ + M+AGGTGI P L ++
Sbjct: 171 FVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSF-YLRDVKRPVLMLAGGTGIAPFLSML 229
Query: 208 EAILKNPDDNTQVSLLYG 225
           + +L+       V L++G
Sbjct: 230 Q-VLEQKGSEHPVRLVFG 246

>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 24/157 (15%)
Query: 157 GKMSQHFASLKPGDVVEVKGPIEKLRYSPNM-KKHIGMIAGGTGITPMLQVIEAILKNPD 215
           G  S +   ++PG  V++ GP+ K    P+  + ++ M+AGGTGITPM   +  + K+ +
Sbjct: 116 GVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAE 175
Query: 216 DNTQVS--------LLYGNISPXXXXXXXXXXXXAASHP-NLKVFYTVDNPTKNWKGGVG 266
                         L++G  +                +P N ++ Y +    KN +GG  
Sbjct: 176 RAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRM 235
Query: 267 YISKDTALKGLPSPSDDALIL---------VCGPPGM 294
           YI    A       +D+   L         +CGP GM
Sbjct: 236 YIQDRVA-----EHADELWQLIKNQKTHTYICGPRGM 267

>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 157 GKMSQHFASLKPGDVVEVKGPIEKLRYSPNM-KKHIGMIAGGTGITPMLQVIEAILKNPD 215
           G  S +   ++PG  V++ GP+ K    P+  + ++ M+AGGTGITPM   +  + K+ +
Sbjct: 116 GVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAE 175
Query: 216 DNTQVS--------LLYGNISPXXXXXXXXXXXXAASHP-NLKVFYTVDNPTKNWKGGVG 266
                         L++G  +                +P N ++ Y +    KN +GG  
Sbjct: 176 RAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRM 235
Query: 267 YISKDTA-----LKGLPSPSDDALILVCGPPGM 294
           YI    A     L  L   +      +CGPP M
Sbjct: 236 YIQDRVAEHADQLWQLIK-NQKTHTYICGPPPM 267

>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 157 GKMSQHFASLKPGDVVEVKGPIEKLRYSPNM-KKHIGMIAGGTGITPMLQVIEAILKNPD 215
           G  S +   ++PG  V++ GP+ K    P+  + ++ M+AGGTGITPM   +  + K+ +
Sbjct: 116 GVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAE 175
Query: 216 DNTQVS--------LLYGNISPXXXXXXXXXXXXAASHP-NLKVFYTVDNPTKNWKGGVG 266
                         L++G  +                +P N ++ Y +    KN +GG  
Sbjct: 176 RAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRM 235
Query: 267 YISKDTA-----LKGLPSPSDDALILVCGPPGM 294
           YI    A     L  L   +      +CGP GM
Sbjct: 236 YIQDRVAEHADQLWQLIK-NQKTHTYICGPRGM 267

>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus In Complex With Miconazole Length = 403

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 169 GDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS 228
           GD V++  P        + K  I +I+GG G+TPM+ +++  L+ P    QV  ++G  +
Sbjct: 247 GDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQAPP--RQVVFVHGARN 304
Query: 229 PXXXXXXXXXXXXAASHPNLKVFYTVDNPTKNWKGGVGY-----ISKDTALKGLPSPSDD 283
                        A ++ NL +F   D P      G  Y     +      K +  P  D
Sbjct: 305 SAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLP--D 362
Query: 284 ALILVCGPPGMMK 296
           A   +CGP   M+
Sbjct: 363 ADYYICGPIPFMR 375

>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes Eutrophus At 1.75 A Resolution Length = 403

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 169 GDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS 228
           GD V++  P        + K  I +I+GG G+TPM+ +++  L+ P    QV  ++G  +
Sbjct: 247 GDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQAPP--RQVVFVHGARN 304
Query: 229 PXXXXXXXXXXXXAASHPNLKVFYTVDNPTKNWKGGVGY-----ISKDTALKGLPSPSDD 283
                        A ++ NL +F   D P      G  Y     +      K +  P  D
Sbjct: 305 SAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLP--D 362
Query: 284 ALILVCGPPGMMK 296
           A   +CGP   M+
Sbjct: 363 ADYYICGPIPFMR 375

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	1e-121
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	1e-101
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	4e-95
1tvc_A	250	Methane monooxygenase component C, methane monooxy	2e-37
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	6e-34
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	2e-30
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	6e-29
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	1e-28
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	2e-27
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	4e-27
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	2e-25
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	3e-24
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	9e-24
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	9e-24
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	2e-22
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	5e-14
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	1e-13
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	2e-13
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	9e-06
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	4e-05
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	1e-04
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score =  346 bits (891), Expect = e-121
 Identities = 108/261 (41%), Positives = 162/261 (62%), Gaps = 20/261 (7%)

Query: 69  PKIALNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGN 127
            + ALNP+++  F L++   ++HN+ LFRF+   P   +GL +   +  +A +      +
Sbjct: 2   REPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATV------D 55

Query: 128 TKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNM 187
            K + RPYTP+S  + KG+FDL+IKVY +G+MSQ+   L PGD ++V+GP  +  Y PNM
Sbjct: 56  GKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNM 115

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
            K +GMIAGGTGITPMLQV  AI+KNP + T ++L++ N++ DDILL+ +LD +A  + N
Sbjct: 116 VKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILLRTELDDMAKKYSN 175

Query: 248 LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS 307
            KV+Y ++NP   W GGVG++S D   +    PS D  +++CGPP M K +         
Sbjct: 176 FKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMMNKAM--------- 226

Query: 308 QGELSGILKDLGYTEQMVYKF 328
                G L+ LGYT +  + F
Sbjct: 227 ----QGHLETLGYTPEQWFIF 243

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score =  297 bits (761), Expect = e-101
 Identities = 103/292 (35%), Positives = 149/292 (51%), Gaps = 46/292 (15%)

Query: 65  EETDPKIA-LNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQ 122
           + + P I   +PD     +L D   +SH++  FRF+   P   LGL V   I   A +  
Sbjct: 2   QRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARI-- 59

Query: 123 DAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVE 173
               +   VVRPYTPIS  + KG  DL+IKVY           GKMSQ+  S++ GD +E
Sbjct: 60  ----DGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIE 115

Query: 174 VKGPIEKLRYSPNMK----------------KHIGMIAGGTGITPMLQVIEAILKNPDDN 217
            +GP   L Y    K                K +GMIAGGTGITPMLQVI AI+K+PDD+
Sbjct: 116 FRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDH 175

Query: 218 TQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKG 276
           T   LL+ N +  DILL+ +L+ L   H    K++YT+D   + W  G G+++++     
Sbjct: 176 TVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDH 235

Query: 277 LPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
           LP P ++ L+L+CGPP M+++                 L  +G+  +  + F
Sbjct: 236 LPPPEEEPLVLMCGPPPMIQYACLPN------------LDHVGHPTERCFVF 275

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score =  282 bits (722), Expect = 4e-95
 Identities = 94/285 (32%), Positives = 141/285 (49%), Gaps = 43/285 (15%)

Query: 69  PKIALNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGN 127
                NP   I  +L     +S +  LFRFS   P   LGL +   I   A         
Sbjct: 3   APALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT------IE 56

Query: 128 TKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPI 178
            K  +R YTP S  +  GHFDLL+KVY           G M+Q+  SL  G  ++VKGP+
Sbjct: 57  GKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPL 116

Query: 179 EKLRYS----------PNMKKHIGMIAGGTGITPMLQVIEAILKN-PDDNTQVSLLYGNI 227
             + Y+              + + MI GG+GITPM Q+I+A+L++ P+D+T++ L+Y N 
Sbjct: 117 GHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176

Query: 228 SPDDILLKQKLDILAASHPN-LKVFYTVD---NPTKNWKGGVGYISKDTALKGLPSPSDD 283
           + DDILL+ +LD  AA +P+ LKV+Y +D    P + WK  VG++++    + +P   DD
Sbjct: 177 TEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD 236

Query: 284 ALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
            L L CGPP M++              +S  L+ + Y     +  
Sbjct: 237 TLALACGPPPMIQFA------------ISPNLEKMKYDMANSFVV 269

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score =  133 bits (337), Expect = 2e-37
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 3/169 (1%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEKLRYSPNMKK 189
           V R Y+P +    +G  + LI+V PEG+ S +     + G V+ VKGP+           
Sbjct: 59  VSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMA 118

Query: 190 HIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLK 249
               +AGGTG+ P++ ++  + +    N +  + +G  +  ++    +L  L  S  NL 
Sbjct: 119 PRYFVAGGTGLAPVVSMVRQMQEWTAPN-ETRIYFGVNTEPELFYIDELKSLERSMRNLT 177

Query: 250 VFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           V   V +P+ +W+G  G    D   + L S   +  I +CGPPGM+   
Sbjct: 178 VKACVWHPSGDWEGEQGSPI-DALREDLESSDANPDIYLCGPPGMIDAA 225

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score =  123 bits (311), Expect = 6e-34
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEKLRYSPNMKKHI 191
           RP++  S  + KG  +L I        ++     +     + V  P  +     + ++ +
Sbjct: 46  RPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPM 105

Query: 192 GMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF 251
            +IAGGTG +    ++   L    +   +++ +G      +    +L+ L+  HP L+V 
Sbjct: 106 ILIAGGTGFSYARSILLTALARNPNR-DITIYWGGREEQHLYDLCELEALSLKHPGLQVV 164

Query: 252 YTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMK 296
             V+ P   W+G  G +     L+   + + +  I + G   M K
Sbjct: 165 PVVEQPEAGWRGRTGTVL-TAVLQDHGTLA-EHDIYIAGRFEMAK 207

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score =  116 bits (291), Expect = 2e-30
 Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 37/234 (15%)

Query: 117 RAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY---------------PEGKMSQ 161
           +         N +  VR Y+  +         L +++                  G  S 
Sbjct: 71  KMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSS 130

Query: 162 HFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVS 221
           +  SLKPGD V + GP           + +  I GG G+ P+   I  + +      +VS
Sbjct: 131 YIFSLKPGDKVMMSGPYGDFHIQDTDAEML-YIGGGAGMAPLRAQILHLFRTLKTGRKVS 189

Query: 222 LLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTK--NWKGGVGYISK---DTALKG 276
             YG  S ++I  ++    +    PN K    + +P    NW G VG+I +   D  LK 
Sbjct: 190 YWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIYDNYLKD 249

Query: 277 LPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVY--KF 328
             +P  D    +CGP  M   V              G+L++LG    M++   F
Sbjct: 250 HDAPE-DIEYYMCGPGPMANAV-------------KGMLENLGVPRNMLFFDDF 289

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score =  110 bits (278), Expect = 6e-29
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 14/189 (7%)

Query: 120 LGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIE 179
           LG + +G  + V R Y+   ++      +  +   P+GK+S   A+LKPGD V+V     
Sbjct: 39  LGLEIDG--ERVQRAYS-YVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAA 95

Query: 180 K--LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQK 237
              +       + + M+A GT I P L ++       D    + L++      D+     
Sbjct: 96  GFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDL-DRFKNLVLVHAARYAADLSYLPL 154

Query: 238 LDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKD------TALKGLPSPSDDALILVCG 290
           +  L   +   L++   V           G I          +  GLP   + + +++CG
Sbjct: 155 MQELEKRYEGKLRIQTVVSRE-TAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCG 213

Query: 291 PPGMMKHVS 299
            P M++   
Sbjct: 214 NPQMVRDTQ 222

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score =  111 bits (280), Expect = 1e-28
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 7/167 (4%)

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGPIEKLRYSPNMKKHI 191
           R Y+  S          +++  P+GKMS++     K GD +   GP          +  +
Sbjct: 156 RSYS-FSSQPGNRLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYLRDVKRPVL 214

Query: 192 GMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF 251
            M+AGGTGI P L +++ + +   ++  V L++G     D++  ++LD L    P  +  
Sbjct: 215 -MLAGGTGIAPFLSMLQVLEQKGSEH-PVRLVFGVTQDCDLVALEQLDALQQKLPWFEYR 272

Query: 252 YTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
             V +   +     GY++         +   +  + +CGP  M++ V
Sbjct: 273 TVVAHAE-SQHERKGYVT-GHIEYDWLNGG-EVDVYLCGPVPMVEAV 316

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score =  109 bits (275), Expect = 2e-27
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 10/180 (5%)

Query: 125 EGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHF-ASLKPGDVVEVKGPIEKLRY 183
           EG     +R Y+ ++       + + +K    G++S         GDVV++  P      
Sbjct: 196 EGFPHQEIRQYS-LTRKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFM 254

Query: 184 SPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAA 243
           +      + +I+ G G TPML +++ + K      QV+  +   + D      ++  L  
Sbjct: 255 AVADDTPVTLISAGVGQTPMLAMLDTLAKA-GHTAQVNWFHAAENGDVHAFADEVKELGQ 313

Query: 244 SHPNLKVFYTVDNPTKNWKGGV-----GYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           S P          P++  +        G +     L+G           +CGP G M+  
Sbjct: 314 SLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLS-KLEGAF-SDPTMQFYLCGPVGFMQFT 371

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score =  109 bits (273), Expect = 4e-27
 Identities = 56/260 (21%), Positives = 94/260 (36%), Gaps = 36/260 (13%)

Query: 60  LDQINEETDPKIALNPDKWIG---FKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCIL 115
           L  +  E   + A  P  W G   F +++    S     F     D             +
Sbjct: 133 LMGMESELYERSAEQPGGWKGWRTFVIREKRPESDVITSFILEPADGGP----------V 182

Query: 116 TRAPLGQ------DAEGNTKYVVRPYTPISDTEAKGHFDLLIK-----VYPEGKMSQHF- 163
                GQ      D        +R Y+ +SD      + + +K       P G +S    
Sbjct: 183 VNFEPGQYTSVAIDVPALGLQQIRQYS-LSDMPNGRTYRISVKREGGGPQPPGYVSNLLH 241

Query: 164 ASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLL 223
             +  GD V++  P        + K  I +I+GG G+TPM+ +++  L+ P    QV  +
Sbjct: 242 DHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQAPP--RQVVFV 299

Query: 224 YGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGV-----GYISKDTALKGLP 278
           +G  +     ++ +L   A ++ NL +F   D P      G      G +      K + 
Sbjct: 300 HGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSIL 359

Query: 279 SPSDDALILVCGPPGMMKHV 298
            P  DA   +CGP   M+  
Sbjct: 360 LP--DADYYICGPIPFMRMQ 377

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score =  101 bits (254), Expect = 2e-25
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 33/218 (15%)

Query: 120 LGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIE 179
           +G + +G  + ++R Y+ I+    + H +      P+G ++     LK GD + V     
Sbjct: 39  IGLEVDG--RPLMRAYS-IASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPT 95

Query: 180 K--LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQK 237
              +       KH+ +++ GTG+ P L VI+      +   +V L++G     ++     
Sbjct: 96  GTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETY-ERYEKVILVHGVRWVSELAYADF 154

Query: 238 LDILAASHPNLKVFY---------TVDNPTKNWKGGVGYISKDTALKGL----PSPSDDA 284
           +  +   H                    P +N       +      + +     +P DD 
Sbjct: 155 ITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDR 214

Query: 285 LILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE 322
             ++CG P M++               S +L   G   
Sbjct: 215 -AMICGSPSMLEET-------------SAVLDSFGLKI 238

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 98.7 bits (246), Expect = 3e-24
 Identities = 40/278 (14%), Positives = 84/278 (30%), Gaps = 60/278 (21%)

Query: 72  ALNPDKWIGFKLQDTARVSHNSHLFRFSFDPS----------AKLGLDVASCILTRAPLG 121
            + P K +      T+       LF F                 +GL             
Sbjct: 8   PIAPAKVLPDAQTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGL------------- 54

Query: 122 QDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEK- 180
              + N K ++R Y+ I+        +      P+G ++     +K G+ + ++      
Sbjct: 55  --LDDNGKPIMRAYS-IASPAWDEELEFYSIKVPDGPLTSRLQHIKVGEQIILRPKPVGT 111

Query: 181 --LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238
             +      K+    +A GTGI P   ++    +  +   +V +++   +  ++   ++L
Sbjct: 112 LVIDALLPGKRLW-FLATGTGIAPFASLMRE-PEAYEKFDEVIMMHACRTVAELEYGRQL 169

Query: 239 DILAASHPNLKVFY--------TVDNPTKNWKGGV------GYISKDTALKGLPSPSDDA 284
                  P +            T      +  G +      G + +D  +    +P  D 
Sbjct: 170 VEALQEDPLIGELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAP-MNPETDR 228

Query: 285 LILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE 322
             +VCG       V               +L+  G  E
Sbjct: 229 -AMVCGSLAFNVDV-------------MKVLESYGLRE 252

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243

 Score = 96.6 bits (241), Expect = 9e-24
 Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 125 EGNTKYVVRPYTPISDTEAKGHFDLLIK-----VYPEGKMSQHF-ASLKPGDVVEVKGPI 178
           EG+    +R Y+ +S       + + +K         G +S +   ++K GD V++  P 
Sbjct: 47  EGSDYREIRQYS-LSHASNGREYRISVKREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPA 105

Query: 179 EKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKL 238
               +    ++ + +I+ G G TPM  ++  + K     + V+ LY   S  +    Q+ 
Sbjct: 106 GDF-FYVERERPVVLISAGVGATPMQAILHTLAKQNK--SGVTYLYACNSAKEHTFAQET 162

Query: 239 DILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
             L A    ++  +  D    +   G      +  L  L  P +D    +CGP G M++V
Sbjct: 163 AQLIAQQGWMQQVWYRDESADDVLQG------EMQLAELILPIEDGDFYLCGPIGFMQYV 216

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 97.6 bits (243), Expect = 9e-24
 Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 57/273 (20%)

Query: 74  NPDKWIGFKLQDTARVSHNSHLFRFSFDPSA----------KLGLDVASCILTRAPLGQD 123
           +  K+    +      +    LF F+                +GL+V             
Sbjct: 15  SMSKFDTATVLSVHHWTDT--LFSFTCTRDQALRFNNGEFTMVGLEV------------- 59

Query: 124 AEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRY 183
              + K + R Y+ I     + H +        G ++     LK GD V +         
Sbjct: 60  ---DGKPLTRAYS-IVSPNYEEHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLV 115

Query: 184 SPNMK--KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDIL 241
           + N+   K + M++ GTG+ P + +I         + +V L +      ++     +   
Sbjct: 116 ADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFD-KVVLTHTCRLKGELAYMDYIKHD 174

Query: 242 AASHP--------NLKVFYTVDNPTKNWKGGV-GYISKD---TALKGLPSPSDDALILVC 289
              H          L  + TV       +G +   I+     T L   P   +   +++C
Sbjct: 175 LPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLC 234

Query: 290 GPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE 322
           G   M+K               + +LK  G  E
Sbjct: 235 GSTAMLKDT-------------TELLKKAGLVE 254

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* Length = 262

 Score = 93.5 bits (233), Expect = 2e-22
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 27/187 (14%)

Query: 133 RPYTPISDT-EAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGP------IEKLRYSP 185
           RP + IS   +      +L ++  E   +   + L+ G  V+V GP      + +     
Sbjct: 53  RPIS-ISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAE----V 107

Query: 186 NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASH 245
                I +I GG G+ P+ ++ + + K      Q+++L G  S +  +L+ +     ++ 
Sbjct: 108 TSTDKILIIGGGIGVPPLYELAKQLEKT---GCQMTILLGFASENVKILENEF----SNL 160

Query: 246 PNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKD 305
            N+ +    D+ +   KG VG       +  +    D   +  CG P M+K V+ +K   
Sbjct: 161 KNVTLKIATDDGSYGTKGHVG-----MLMNEIDFEVD--ALYTCGAPAMLKAVA-KKYDQ 212

Query: 306 YSQGELS 312
             +  +S
Sbjct: 213 LERLYIS 219

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Length = 158

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 20/148 (13%)

Query: 166 LKPGD-VVEVKGP------IEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNT 218
           +K GD ++ V GP      +EK          I  I   TGI  +  + +A  +      
Sbjct: 1   MKEGDSLLNVAGPLGTPVPMEK-------FGKILAIGAYTGIVEVYPIAKAWQEI---GN 50

Query: 219 QVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLP 278
            V+ L+       ++LK++L+     H    V    +         V    K+  ++ L 
Sbjct: 51  DVTTLHVT-FEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELL 108

Query: 279 SPSDDALILVCGPPGMMKHVSGEKAKDY 306
              D  L+ + GP G  K V  E  K+Y
Sbjct: 109 ESEDWDLVFMVGPVGDQKQVF-EVVKEY 135

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Length = 142

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 171 VVEVKGP------IEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLY 224
           ++ V GP      +EK          I  I   TGI  +  + +A  +  +D T      
Sbjct: 2   LLNVAGPLGTPVPMEK-------FGKILAIGAYTGIVEVYPIAKAWQEIGNDVT----TL 50

Query: 225 GNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDA 284
                  ++LK++L+     H    V    +         V    K+   + L S   D 
Sbjct: 51  HVTFEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELLESEDWD- 109

Query: 285 LILVCGPPGMMKHVSGEKAKDY 306
           L+ + GP G  K V  E  K+Y
Sbjct: 110 LVFMVGPVGDQKQVF-EVVKEY 130

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 36/170 (21%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKM-SQHF-ASLKPGDVVEVKGPIEKLRYSPNMK 188
             R Y+  +D++ +  + + +K    G+  S  F      GD VEV  P  +       K
Sbjct: 53  SRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKRAK 112

Query: 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL 248
             I ++AGG GITPML +   +           L Y    P+        D L +     
Sbjct: 113 SFI-LVAGGIGITPMLSMARQLRAEGL--RSFRLYYLTRDPEGTAF---FDELTSDEWRS 166

Query: 249 KVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
            V    D                +  +          +  CGP  +M  V
Sbjct: 167 DVKIHHD-----HGDPTKAFDFWSVFEKSK---PAQHVYCCGPQALMDTV 208

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 39/172 (22%), Positives = 59/172 (34%), Gaps = 30/172 (17%)

Query: 160 SQHFASLKPGDVVEVKGPIEKLRYSP--NMKKHIGMIAGGTGITPMLQVIEAILKNPDDN 217
           S    + KPGD +++ GP  K+   P  +      MIA GTG+ P    +  +      N
Sbjct: 130 SNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPN 189

Query: 218 TQVS----LLYGNISPDDILLKQKLDILAASHPNLKVFYTV---DNPTKNWKGGVGYI-- 268
            +      L  G  + D +L  ++       +P+   +      +   KN  GG  Y+  
Sbjct: 190 YRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSRE--QKNRSGGKMYVQD 247

Query: 269 ----SKDTALKGLPSPSDDALILVCGPPGMMKHV----------SGEKAKDY 306
                 D   K L      A I  CG  GMM  +           GE     
Sbjct: 248 KIEEYSDEIFKLL---DGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQK 296

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 26/131 (19%)

Query: 131 VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMK-- 188
               Y    + + KG              S +   LKPGD V + GP             
Sbjct: 118 RDNIYDENGNIQFKGV------------CSNYMCDLKPGDEVTMTGP-----SGKKFLLP 160

Query: 189 -----KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVS--LLYGNISPDDILLKQKLDIL 241
                  I  +A GTGI P + + E +L++       +  L+YG    D++++   L  L
Sbjct: 161 NTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGL 220

Query: 242 AASHPNLKVFY 252
            + H N K+  
Sbjct: 221 ESKHKNFKLIT 231

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 157 GKMSQHFASLKPGDVVEVKGPIEKLR---YSPNMKKHIGMIAGGTGITPM---LQVIEAI 210
           G  S    +LK  D + + G          +     +   IA GTGI+P    L+ + A 
Sbjct: 136 GYCSGFIKNLKINDDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAY 195

Query: 211 LKNPDDNTQVS------LLYGNISPDDILLKQKLDILAASHPNL 248
            KN   N   +      + YG  + D IL   +L+     +PN 
Sbjct: 196 DKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNN 239

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 38/178 (21%)

Query: 160 SQHFASLKPGDVVEVKGPIEKLRYSPNMK------KHIGMIAGGTGITPMLQVIEAILKN 213
           S +   ++PG  V++ GP         M        ++ M+AGGTGITPM   +  + K+
Sbjct: 119 STYLTHIEPGSEVKITGP-----VGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKD 173

Query: 214 PDDNTQVS--------LLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGG 264
            +              L++G  +  +IL K++L+ +   +P N ++ Y +    KN +GG
Sbjct: 174 AERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGG 233

Query: 265 VGYI------SKDTALKGLPSPSDDALILVCGPPGMMKHV----------SGEKAKDY 306
             YI        D   + + +        +CGPP M + +           G    DY
Sbjct: 234 RMYIQDRVAEHADQLWQLIKNQ--KTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDY 289

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 47/325 (14%), Positives = 85/325 (26%), Gaps = 119/325 (36%)

Query: 33  RFPFGAIAAVAGGVSYYCYFS---SPNLV--HLDQINEETDPKIALNPDKWIGFKLQDTA 87
           +  F           ++       SP  V   L ++  + DP      D     KL+  +
Sbjct: 179 KMDFKI---------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 88  RVSHNSHLFRFSFDPSAKLGLD-VAS----------C---ILTRAPLGQDAEGNTKY--- 130
             +    L +     +  L L  V +          C   + TR     D          
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 131 -VVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKK 189
            +      ++  E K    LL+K          +   +P D+     P E L  +P   +
Sbjct: 290 SLDHHSMTLTPDEVKS---LLLK----------YLDCRPQDL-----PREVLTTNP---R 328

Query: 190 HIGMIAGG-------------TGITPMLQVIEAILKN----------------PDDN--- 217
            + +IA                    +  +IE+ L                  P      
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 218 TQV-SLLYGNISPDD-----------------------------ILLKQKLDILAASHPN 247
           T + SL++ ++   D                             + LK KL+   A H +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 248 LKVFYTVDNPTKNWKGGV----GYI 268
           +   Y +     +          Y 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYF 473

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	100.0
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	100.0
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	100.0
1tvc_A	250	Methane monooxygenase component C, methane monooxy	100.0
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	100.0
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	100.0
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	100.0
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	100.0
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	100.0
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	100.0
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	100.0
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	100.0
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	100.0
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	100.0
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	100.0
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	100.0
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	100.0
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	100.0
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	100.0
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	100.0
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	100.0
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	100.0
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	100.0
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	100.0
2gpj_A	252	Siderophore-interacting protein; structural genomi	100.0
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.96
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.95
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.94
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.94
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.94
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.93
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.91
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.91
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.91
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.89
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.89

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=100.00  E-value=5.5e-48  Score=343.66  Aligned_cols=240  Identities=45%  Similarity=0.845  Sum_probs=217.8

Q ss_pred             CccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEE
Q 020296           70 KIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFD  148 (328)
Q Consensus        70 ~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~  148 (328)
                      +..+++..|++++|++++.+++++.+|+|+.+. .....+.||||+.++++..      +....|+|||+|.+.+.+.++
T Consensus         3 ~~~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~------g~~~~R~ysi~s~~~~~~~~~   76 (243)
T 2eix_A            3 EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVD------GKEIYRPYTPVSSDDEKGYFD   76 (243)
T ss_dssp             CCSCCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEET------TEEEEEEECCCSCTTCCSEEE
T ss_pred             cccCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeC------CCEEEeeeeecCCCCCCCEEE
Confidence            467889999999999999999999999999886 4467899999999999854      556899999999988789999


Q ss_pred             EEEEEeCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC
Q 020296          149 LLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS  228 (328)
Q Consensus       149 l~Vk~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~  228 (328)
                      |+||.+++|.+|+||+++++||+|.|.||+|+|.++.+..++++||||||||||+++|++++..+++...+++|+|++|+
T Consensus        77 l~vk~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r~  156 (243)
T 2eix_A           77 LIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVN  156 (243)
T ss_dssp             EEEECCTTCHHHHHHHTCCTTCEEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEE
T ss_pred             EEEEEcCCCCcchHhhcCCCCCEEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcCC
Confidence            99999999999999999999999999999999988776678999999999999999999999876444579999999999


Q ss_pred             CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCc
Q 020296          229 PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQ  308 (328)
Q Consensus       229 ~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~q  308 (328)
                      .+|+++.+||++|+++++++++++++++++++|.+..|+++++.+++.++.+..+..||+|||++|+++++         
T Consensus       157 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~~~~~~vy~CGp~~m~~~v~---------  227 (243)
T 2eix_A          157 EDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMMNKAMQ---------  227 (243)
T ss_dssp             GGGCTTHHHHHHHHHHCTTEEEEEEEEECCTTCCSEESSCCHHHHHHHSCCTTSSEEEEEESSHHHHHHHH---------
T ss_pred             HHHhhHHHHHHHHHHHCCCeEEEEEeCCCCccccCcCCccCHHHHHHhcCCCCCCeEEEEECCHHHHHHHH---------
Confidence            99999999999999999999999999988778889999999878887776654567899999999999998         


Q ss_pred             chHHHHHhhcCCCCCCeEeC
Q 020296          309 GELSGILKDLGYTEQMVYKF  328 (328)
Q Consensus       309 g~~~~~L~~~G~~~~~I~~f  328 (328)
                          +.|+++|+++++||.|
T Consensus       228 ----~~l~~~G~~~~~i~~f  243 (243)
T 2eix_A          228 ----GHLETLGYTPEQWFIF  243 (243)
T ss_dssp             ----HHHHHHTCCGGGEEEC
T ss_pred             ----HHHHHcCCCHHHEEeC
Confidence                9999999999999998

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=100.00  E-value=2.3e-46  Score=339.25  Aligned_cols=243  Identities=42%  Similarity=0.731  Sum_probs=215.2

Q ss_pred             CCCCccCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCC
Q 020296           67 TDPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKG  145 (328)
Q Consensus        67 ~~~~~~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~  145 (328)
                      +..+..+++..|..++|++++.+++++..|+|+.+. .....+.||||+.++++..      +....|+|||++.+.+.+
T Consensus         5 ~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~------g~~~~R~ySi~s~~~~~~   78 (275)
T 1umk_A            5 TPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARID------GNLVVRPYTPISSDDDKG   78 (275)
T ss_dssp             CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEET------TEEEEEEECCSSCTTCCS
T ss_pred             CCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeC------CcEEEeccccCCccCCCC
Confidence            345577899999999999999999999999999886 3457899999999998765      567899999999988789


Q ss_pred             eEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeeccccC--------C--------CCCceEEEEecCccH
Q 020296          146 HFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS--------P--------NMKKHIGMIAGGTGI  200 (328)
Q Consensus       146 ~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~--------~--------~~~~~ivlIAgGtGI  200 (328)
                      .++|+||.+         ++|.+|+||+++++||+|.|+||+|.|.+.        +        ...++++||||||||
T Consensus        79 ~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGI  158 (275)
T 1umk_A           79 FVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGI  158 (275)
T ss_dssp             EEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGH
T ss_pred             eEEEEEEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccH
Confidence            999999998         789999999999999999999999997542        1        135799999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCCCcccccCHHHHhhcCCC
Q 020296          201 TPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWKGGVGYISKDTALKGLPS  279 (328)
Q Consensus       201 tP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~  279 (328)
                      ||+++|++++..++++..+++|+|++|+.+|+++.+||++|++++++ ++++++++++...|.+..|+++++++++.++.
T Consensus       159 aP~~~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~  238 (275)
T 1umk_A          159 TPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPP  238 (275)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCC
T ss_pred             hHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCC
Confidence            99999999998764455899999999999999999999999999985 99999999888889999999998778777765


Q ss_pred             CCCCcEEEEECChhhHH-hhhcccccCCCcchHHHHHhhcCCCCCCeEeC
Q 020296          280 PSDDALILVCGPPGMMK-HVSGEKAKDYSQGELSGILKDLGYTEQMVYKF  328 (328)
Q Consensus       280 ~~~~~~v~vCGP~~m~~-~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~f  328 (328)
                      ..++..||+|||++|++ +++             ..|+++|+++++||.|
T Consensus       239 ~~~~~~vyvCGp~~m~~~~v~-------------~~L~~~G~~~~~I~~f  275 (275)
T 1umk_A          239 PEEEPLVLMCGPPPMIQYACL-------------PNLDHVGHPTERCFVF  275 (275)
T ss_dssp             GGGCCEEEEESCHHHHHHTTH-------------HHHHHHTCCGGGEEEC
T ss_pred             CCCCeEEEEECCHHHHHHHHH-------------HHHHHcCCCHHHEEeC
Confidence            43468999999999999 887             8999999999999998

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=100.00  E-value=3.7e-43  Score=317.30  Aligned_cols=235  Identities=39%  Similarity=0.719  Sum_probs=201.3

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      ++..|.+++|++++.+++++.+|+|+.+. .....+.||||+.++++..      +....|+|||++.+.+.+.++|+||
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~------g~~~~R~ySi~s~~~~~~~~~l~vk   81 (270)
T 2cnd_A            8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIE------GKLCMRAYTPTSMVDEIGHFDLLVK   81 (270)
T ss_dssp             ---CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEET------TEEEEEEECCCSCTTCCSEEEEEEE
T ss_pred             CCCceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeC------CcEEEEeeccCCCccCCCEEEEEEE
Confidence            67789999999999999999999999886 4467899999999998765      5668999999999877799999999


Q ss_pred             Ee---------CCCccchhhhcCCCCCEEEEEceeec--------cccCC--CCCceEEEEecCccHHHHHHHHHHHHhC
Q 020296          153 VY---------PEGKMSQHFASLKPGDVVEVKGPIEK--------LRYSP--NMKKHIGMIAGGTGITPMLQVIEAILKN  213 (328)
Q Consensus       153 ~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~--------~~~~~--~~~~~ivlIAgGtGItP~~~ll~~l~~~  213 (328)
                      .+         ++|.+|+||+++++||+|.|.||+|.        |.++.  +..++++||||||||||+++|++++..+
T Consensus        82 ~~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~  161 (270)
T 2cnd_A           82 VYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRD  161 (270)
T ss_dssp             CCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred             EeccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhc
Confidence            86         46999999999999999999999997        44443  2468999999999999999999999875


Q ss_pred             -CCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeC---CCCCCCCcccccCHHHHhhcCCCCCCCcEEEE
Q 020296          214 -PDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDN---PTKNWKGGVGYISKDTALKGLPSPSDDALILV  288 (328)
Q Consensus       214 -~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~---~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~v  288 (328)
                       ++...+++|+|++|+.+|+++.+||++|++++++ +++++++++   ++++|.+..|+++++++++.++....+..||+
T Consensus       162 ~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyv  241 (270)
T 2cnd_A          162 QPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALA  241 (270)
T ss_dssp             TTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEE
T ss_pred             CCCCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEE
Confidence             2345799999999999999999999999999885 999998877   45678888999998777777665444578999


Q ss_pred             ECChhhHHh-hhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          289 CGPPGMMKH-VSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       289 CGP~~m~~~-v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      |||++|+++ ++             ..|+++|+++++|+-
T Consensus       242 CGp~~m~~~~~~-------------~~L~~~G~~~~~i~~  268 (270)
T 2cnd_A          242 CGPPPMIQFAIS-------------PNLEKMKYDMANSFV  268 (270)
T ss_dssp             ECCHHHHHTTTH-------------HHHHTTTCCHHHHEE
T ss_pred             ECCHHHHHHHHH-------------HHHHHcCCChhhcEE
Confidence            999999997 45             899999999988764

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=100.00  E-value=4.3e-43  Score=313.56  Aligned_cols=233  Identities=22%  Similarity=0.398  Sum_probs=203.1

Q ss_pred             cCCCCCeEEEEEEEEEEecCCeeEEEEEc-C-CC--CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeE
Q 020296           72 ALNPDKWIGFKLQDTARVSHNSHLFRFSF-D-PS--AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHF  147 (328)
Q Consensus        72 ~l~~~~~~~~~v~~~~~~s~~~~~~~~~~-p-~~--~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l  147 (328)
                      .+....+..++|++++.+++++.+|+|+. + ..  ....+.||||+.++++.        ....|+|||++.+.+.+.+
T Consensus         4 ~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--------~~~~R~ySi~s~~~~~~~l   75 (250)
T 1tvc_A            4 SFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG--------TDVSRSYSPANLPNPEGRL   75 (250)
T ss_dssp             CSCCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS--------CSSSEEECCBCCSSSSCCE
T ss_pred             ecCCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCC--------CccccccccCCCCCCCCeE
Confidence            34556778999999999999999999998 7 53  25789999999998753        2478999999998877999


Q ss_pred             EEEEEEeCCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEee
Q 020296          148 DLLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGN  226 (328)
Q Consensus       148 ~l~Vk~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~  226 (328)
                      +|+||.+++|.+|+||+ ++++||+|.|.||+|+|.+.++..++++||||||||||+++|++++..+. +..+++|+|++
T Consensus        76 ~i~vk~~~~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~-~~~~v~l~~~~  154 (250)
T 1tvc_A           76 EFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGV  154 (250)
T ss_dssp             EEEECCCTTSSSHHHHHHHSSSSSEEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEEC
T ss_pred             EEEEEECCCCCchHHHHhcCCCCCEEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC-CCceEEEEEEe
Confidence            99999999999999997 89999999999999999887665689999999999999999999998753 34789999999


Q ss_pred             CCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCC
Q 020296          227 ISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDY  306 (328)
Q Consensus       227 r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~  306 (328)
                      |+.+|+++.+||++|.++++++++++++++++++|.+..|++++.+. +.+++...+..||+|||++|+++++       
T Consensus       155 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~-~~~~~~~~~~~vyvCGp~~m~~~v~-------  226 (250)
T 1tvc_A          155 NTEPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALR-EDLESSDANPDIYLCGPPGMIDAAC-------  226 (250)
T ss_dssp             SSSTTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSSSSSHHHH-HHHHHSSSSSEEEEESSHHHHHHHH-------
T ss_pred             CCHHHhhhHHHHHHHHHhCCCeEEEEEeccCCCCcCCccceehHHHH-hhhhcccCCcEEEEeCCHHHHHHHH-------
Confidence            99999999999999998899999999998877788899999986544 3333312357899999999999998       


Q ss_pred             CcchHHHHHhhcCCCCCCeEe
Q 020296          307 SQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       307 ~qg~~~~~L~~~G~~~~~I~~  327 (328)
                            ..|+++|+++++||.
T Consensus       227 ------~~l~~~G~~~~~i~~  241 (250)
T 1tvc_A          227 ------ELVRSRGIPGEQVFF  241 (250)
T ss_dssp             ------HHHHHHCCCCSEEEE
T ss_pred             ------HHHHHcCCCHHHEEE
Confidence                  999999999999984

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.2e-41  Score=310.53  Aligned_cols=240  Identities=23%  Similarity=0.392  Sum_probs=201.5

Q ss_pred             CCCCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCC----CC-------------------CCCc
Q 020296           73 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD----AE-------------------GNTK  129 (328)
Q Consensus        73 l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~----~~-------------------~~~~  129 (328)
                      +.+ .+..++|++++.+++++++|+|+.++.....+.||||+.++++....    .+                   ..+.
T Consensus         5 ~~~-~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   83 (290)
T 2r6h_A            5 FGV-KEWECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEE   83 (290)
T ss_dssp             -CC-CEEEEEEEEEEESSSSEEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECS
T ss_pred             ccc-eEEEEEEEEeeecCCCeEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCC
Confidence            444 45579999999999999999999886445679999999999874200    00                   0134


Q ss_pred             cccccccCCcCCCCCCeEEEEEEE---------------eCCCccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEE
Q 020296          130 YVVRPYTPISDTEAKGHFDLLIKV---------------YPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMI  194 (328)
Q Consensus       130 ~~~RpYTi~s~~~~~~~l~l~Vk~---------------~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlI  194 (328)
                      ...|+|||++.+.+.+.++|+||.               +++|.+|+||+++++||+|.|.||+|.|.++ +..++++||
T Consensus        84 ~~~R~ySi~s~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~-~~~~~~vli  162 (290)
T 2r6h_A           84 ETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQ-DTDAEMLYI  162 (290)
T ss_dssp             CEEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCC-SSSCEEEEE
T ss_pred             CcceeeeccCCCCCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCC-CCCCeEEEE
Confidence            578999999999878999999997               4679999999999999999999999998875 457899999


Q ss_pred             ecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCC--CCCCCCcccccCHHH
Q 020296          195 AGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNP--TKNWKGGVGYISKDT  272 (328)
Q Consensus       195 AgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~--~~~~~g~~g~i~~~~  272 (328)
                      ||||||||+++|+++++.......+++|+|++|+.+|+++.+||+++.+++++++++++++++  ++.|.+..|++++.+
T Consensus       163 agGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~~  242 (290)
T 2r6h_A          163 GGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVI  242 (290)
T ss_dssp             EEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCCCSCBSCHHHHH
T ss_pred             ECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEEccCCcccCCCCeeEecCHHH
Confidence            999999999999999887644457899999999999999999999999989999999999875  356888899998777


Q ss_pred             HhhcCCCC--CCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          273 ALKGLPSP--SDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       273 l~~~~~~~--~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      +++.+...  ..+..||+|||++|+++++             +.|+++|+++++||.
T Consensus       243 ~~~~l~~~~~~~~~~vyvCGp~~m~~~v~-------------~~l~~~G~~~~~i~~  286 (290)
T 2r6h_A          243 YDNYLKDHDAPEDIEYYMCGPGPMANAVK-------------GMLENLGVPRNMLFF  286 (290)
T ss_dssp             HHHTTTTCSCGGGEEEEEECCHHHHHHHH-------------HHHHHHTCCGGGEEE
T ss_pred             HHhHHhhccCcCCcEEEEECCHHHHHHHH-------------HHHHHcCCCHHHEEe
Confidence            66655431  2357899999999999998             999999999999984

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=100.00  E-value=4.9e-42  Score=303.18  Aligned_cols=222  Identities=17%  Similarity=0.285  Sum_probs=191.0

Q ss_pred             EEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCc
Q 020296           79 IGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK  158 (328)
Q Consensus        79 ~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~  158 (328)
                      ..++|++++.+++++.+|+|+.+.  ...+.||||+.++++..         ..|+|||++.+.+.+.++|+||.+++|.
T Consensus         3 ~~~~V~~~~~~~~~~~~l~l~~~~--~~~~~pGq~v~l~~~~~---------~~R~ySi~s~~~~~~~l~l~i~~~~~G~   71 (232)
T 1qfj_A            3 LSCKVTSVEAITDTVYRVRIVPDA--AFSFRAGQYLMVVMDER---------DKRPFSMASTPDEKGFIELHIGASEINL   71 (232)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEESS--CCCCCTTCEEEEESSSS---------CEEEEECCSCTTSTTCEEEEEC------
T ss_pred             eEEEEEEEEecCCCEEEEEEecCC--CCCcCCCCEEEEECCCC---------ceeeeecCCCCCCCCcEEEEEEEccCCc
Confidence            578999999999999999999874  45899999999998642         7899999999987789999999998888


Q ss_pred             cchh-hhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHH
Q 020296          159 MSQH-FASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQK  237 (328)
Q Consensus       159 ~S~~-L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~e  237 (328)
                      +|++ +.++++||+|.|.||+|+|.+.++..++++||||||||||+++|++++..+. +..+++|+|++|+.+|+++.+|
T Consensus        72 ~s~~~~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~e  150 (232)
T 1qfj_A           72 YAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYDLCE  150 (232)
T ss_dssp             CCHHHHHHHHHHSEEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTTHHH
T ss_pred             hhHHHHHhCCCCCEEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhhhHHH
Confidence            8886 4589999999999999999887666789999999999999999999998753 3478999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH-h
Q 020296          238 LDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL-K  316 (328)
Q Consensus       238 l~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L-~  316 (328)
                      |++++++++++++++++++++++|.+..|++++.+++.. .+. .+..||+|||++|+++++             +.| +
T Consensus       151 l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~~-~~~-~~~~vyvCGp~~m~~~v~-------------~~l~~  215 (232)
T 1qfj_A          151 LEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDH-GTL-AEHDIYIAGRFEMAKIAR-------------DLFCS  215 (232)
T ss_dssp             HHHHHHHCTTEEEEEEESSCCTTCCSEESCHHHHHHHHC-SCC-TTCEEEEESCHHHHHHHH-------------HHHHH
T ss_pred             HHHHHHHCCCeEEEEEEcCCCCCcCCceeeHHHHHHHhc-CCc-cccEEEEECCHHHHHHHH-------------HHHHH
Confidence            999999999999999999888889999999997666553 332 358899999999999998             888 9


Q ss_pred             hcCCCCCCeEe
Q 020296          317 DLGYTEQMVYK  327 (328)
Q Consensus       317 ~~G~~~~~I~~  327 (328)
                      ++|+++++||.
T Consensus       216 ~~g~~~~~i~~  226 (232)
T 1qfj_A          216 ERNAREDRLFG  226 (232)
T ss_dssp             HSCCCGGGEEC
T ss_pred             HcCCCHHHEEE
Confidence            99999999984

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=2.4e-41  Score=300.74  Aligned_cols=225  Identities=20%  Similarity=0.242  Sum_probs=195.3

Q ss_pred             CCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296           76 DKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY  154 (328)
Q Consensus        76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~  154 (328)
                      +.|++++|++++.+++++.+|+|+.++ .....+.||||+.++++...    ......|+|||++.+.+ +.++|+||.+
T Consensus         1 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~----~~~~~~R~ySi~s~~~~-~~~~i~vk~~   75 (243)
T 4eh1_A            1 RDGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEG----SDYREIRQYSLSHASNG-REYRISVKRE   75 (243)
T ss_dssp             CCCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSS----CSSCEEEEEEBCSCCCS-SCEEEEEECT
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCC----CccccceeeEeccCCCC-CeEEEEEEEe
Confidence            368999999999999999999999886 34578999999999998651    11225799999998864 8899999999


Q ss_pred             -----CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCC
Q 020296          155 -----PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNIS  228 (328)
Q Consensus       155 -----~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~  228 (328)
                           ++|.+|+||+ ++++||+|.|.||+|.|.++ +..++++||||||||||+++|++++..+... . ++|+|++|+
T Consensus        76 ~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~~-~-v~l~~~~r~  152 (243)
T 4eh1_A           76 GVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNKS-G-VTYLYACNS  152 (243)
T ss_dssp             TTTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTCC-S-EEEEEEESS
T ss_pred             ecCCCCCCeehhHHHhcCCCCCEEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCCC-e-EEEEEEeCC
Confidence                 8899999998 69999999999999999877 5679999999999999999999999986432 3 999999999


Q ss_pred             CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCc
Q 020296          229 PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQ  308 (328)
Q Consensus       229 ~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~q  308 (328)
                      .+|+++.+||++|.+++ +++++++++++...|. ..|+++.+.+  .++.  .+..||+|||++|+++++         
T Consensus       153 ~~~~~~~~el~~l~~~~-~~~~~~~~s~~~~~~~-~~g~~~~~~~--~~~~--~~~~vyvCGp~~m~~~v~---------  217 (243)
T 4eh1_A          153 AKEHTFAQETAQLIAQQ-GWMQQVWYRDESADDV-LQGEMQLAEL--ILPI--EDGDFYLCGPIGFMQYVV---------  217 (243)
T ss_dssp             GGGCTTHHHHHHHHHHH-TCEEEEEESSCCCTTC-EESSCCCTTS--CCCT--TTCEEEEEECHHHHHHHH---------
T ss_pred             hhhhhHHHHHHHHHHhC-CeEEEEEEccCCCccc-ccCCccHHHe--eccC--CCcEEEEECCHHHHHHHH---------
Confidence            99999999999999887 8999999988766554 7789987655  3332  468999999999999998         


Q ss_pred             chHHHHHhhcCCCCCCeEe
Q 020296          309 GELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       309 g~~~~~L~~~G~~~~~I~~  327 (328)
                          +.|+++|+++++||.
T Consensus       218 ----~~l~~~g~~~~~i~~  232 (243)
T 4eh1_A          218 ----KQLLALGVDKARIHY  232 (243)
T ss_dssp             ----HHHHHHTCCGGGEEE
T ss_pred             ----HHHHHcCCCHHHEEE
Confidence                999999999999984

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=100.00  E-value=6.9e-41  Score=318.55  Aligned_cols=233  Identities=18%  Similarity=0.246  Sum_probs=200.9

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      ++..|++++|++++.+++++..|+|+.++ .....+.||||+.++++..    +......|+|||++.|. ++.++|.||
T Consensus       148 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~----~~~~~~~R~YSi~s~p~-~~~~~i~Vk  222 (396)
T 1gvh_A          148 GWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPE----GFPHQEIRQYSLTRKPD-GKGYRIAVK  222 (396)
T ss_dssp             CCSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCT----TCSSCEEEEEECCSCCC-SSCEEEEEE
T ss_pred             CCCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCC----CCccceeecceeccCCC-CCeEEEEEE
Confidence            46789999999999999999999999876 3456899999999999743    11235789999999986 589999999


Q ss_pred             EeCCCccchhhhc-CCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCch
Q 020296          153 VYPEGKMSQHFAS-LKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDD  231 (328)
Q Consensus       153 ~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d  231 (328)
                      .+++|.+|+||++ +++||+|.++||+|.|.++.+..++++|||||||||||++|++++.... +.++++|+|++|+.++
T Consensus       223 ~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~-~~~~v~l~~~~r~~~~  301 (396)
T 1gvh_A          223 REEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG-HTAQVNWFHAAENGDV  301 (396)
T ss_dssp             CCTTCHHHHHHHHTCCTTCEEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCTTT
T ss_pred             EcCCCcchHHHHhcCCCCCEEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC-CCCcEEEEEEeCCHHH
Confidence            9999999999996 9999999999999999887556789999999999999999999998753 3478999999999999


Q ss_pred             hhhHHHHHHHHHhCCCeEEEEEEeCCCCCC-----CCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCC
Q 020296          232 ILLKQKLDILAASHPNLKVFYTVDNPTKNW-----KGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDY  306 (328)
Q Consensus       232 ~~~~~el~~l~~~~~~~~v~~~~~~~~~~~-----~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~  306 (328)
                      +++.+||++|++++++++++++++++...|     .+..|+++.+.+++....+  +..||+|||++||++++       
T Consensus       302 ~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~--~~~vyvCGp~~m~~~v~-------  372 (396)
T 1gvh_A          302 HAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDP--TMQFYLCGPVGFMQFTA-------  372 (396)
T ss_dssp             CCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSCCCCT--TCEEEEESCHHHHHHHH-------
T ss_pred             hhhHHHHHHHHHHCCCeEEEEEECCCCccccccCccCccCcCCHHHHhhccCCC--CCEEEEeCCHHHHHHHH-------
Confidence            999999999999999999999988865433     4567899876665532222  58899999999999998       


Q ss_pred             CcchHHHHHhhcCCCCCCeEe
Q 020296          307 SQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       307 ~qg~~~~~L~~~G~~~~~I~~  327 (328)
                            +.|+++|+++++||.
T Consensus       373 ------~~L~~~Gv~~~~i~~  387 (396)
T 1gvh_A          373 ------KQLVDLGVKQENIHY  387 (396)
T ss_dssp             ------HHHHHTTCCGGGEEE
T ss_pred             ------HHHHHcCCCHHHEEE
Confidence                  999999999999984

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=100.00  E-value=1.1e-40  Score=317.94  Aligned_cols=232  Identities=20%  Similarity=0.291  Sum_probs=200.2

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      ++..|++++|++++.+++++..|+|+.++ .....+.||||+.++++.++    ......|+|||++.|. .+.++|.||
T Consensus       150 ~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~~~R~YSi~s~p~-~~~~~i~Vk  224 (403)
T 1cqx_A          150 GWKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPA----LGLQQIRQYSLSDMPN-GRTYRISVK  224 (403)
T ss_dssp             CCSSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETT----TTEEEEEEEECCSCCC-SSCEEEEEE
T ss_pred             CCCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCC----CCcceeecceecCCCC-CCeEEEEEE
Confidence            46789999999999999999999999876 34568999999999998530    1225789999999986 589999999


Q ss_pred             EeC-----CCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEee
Q 020296          153 VYP-----EGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGN  226 (328)
Q Consensus       153 ~~~-----~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~  226 (328)
                      .++     +|.+|+||+ ++++||+|.|.||+|.|.++.+..++++|||||||||||++|++++..  .+.++++|+|++
T Consensus       225 ~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~--~~~~~v~l~~~~  302 (403)
T 1cqx_A          225 REGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--APPRQVVFVHGA  302 (403)
T ss_dssp             CCCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC--SSCCCEEEEEEE
T ss_pred             ECCCCCCCCCeehHHHhhCCCCCCEEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh--CCCCcEEEEEEe
Confidence            986     699999999 699999999999999998865567899999999999999999999987  234789999999


Q ss_pred             CCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCC-----CCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcc
Q 020296          227 ISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNW-----KGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGE  301 (328)
Q Consensus       227 r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~-----~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~  301 (328)
                      |+.+++++.+||++|++++++++++++++++...|     .+..|+++.+.+.+.+..+  +..||+|||++||++++  
T Consensus       303 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~--~~~vyvCGp~~m~~~v~--  378 (403)
T 1cqx_A          303 RNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLP--DADYYICGPIPFMRMQH--  378 (403)
T ss_dssp             SCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHHCCT--TCEEEEESSHHHHHHHH--
T ss_pred             CChhhCcHHHHHHHHHHhCCCcEEEEEECCCCcccccccccCcCCCcCHHHHhhccCCC--CCEEEEeCCHHHHHHHH--
Confidence            99999999999999999999999999988876554     3567899876666532122  58899999999999998  


Q ss_pred             cccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          302 KAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       302 ~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                                 +.|+++|+++++||.
T Consensus       379 -----------~~L~~~Gv~~~~i~~  393 (403)
T 1cqx_A          379 -----------DALKNLGIHEARIHY  393 (403)
T ss_dssp             -----------HHHHHTTCCGGGEEE
T ss_pred             -----------HHHHHcCCCHHHeEE
Confidence                       999999999999985

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=100.00  E-value=2.4e-40  Score=295.26  Aligned_cols=225  Identities=19%  Similarity=0.275  Sum_probs=189.5

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      .|.+++|++++.+++++.+|+|+ ++  ...+.||||+.++++..      +....|+|||++.+.+ +.++|+||.+++
T Consensus         3 ~~~~~~V~~~~~~~~~~~~l~l~-~~--~~~~~pGq~v~l~~~~~------g~~~~R~ySi~s~~~~-~~l~~~v~~~~~   72 (248)
T 1fdr_A            3 DWVTGKVTKVQNWTDALFSLTVH-AP--VLPFTAGQFTKLGLEID------GERVQRAYSYVNSPDN-PDLEFYLVTVPD   72 (248)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEE-CC--CCCCCTTCEEEEEECC---------CEEEEEECCSCTTC-SSEEEEEECCTT
T ss_pred             ceEEEEEEEEEEcCCCEEEEEEe-CC--CCCcCCCCcEEEEccCC------CCeeeeeecccCCCCC-CcEEEEEEEeCC
Confidence            58899999999999999999997 42  36899999999999864      4568999999999875 899999999999


Q ss_pred             CccchhhhcCCCCCEEEEE-ceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296          157 GKMSQHFASLKPGDVVEVK-GPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL  234 (328)
Q Consensus       157 G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~  234 (328)
                      |.+|+||+++++||+|.|. ||+|.|.++.+ ..++++||||||||||+++|++++.... +..+++|+|++|+.+|+++
T Consensus        73 G~~s~~l~~l~~Gd~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~  151 (248)
T 1fdr_A           73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD-RFKNLVLVHAARYAADLSY  151 (248)
T ss_dssp             CSSHHHHHTCCTTCEEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT-TCSEEEEEEEESSGGGCTT
T ss_pred             CchhhHHHhCCCcCEEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC-CCCcEEEEEEcCCHHHhhH
Confidence            9999999999999999999 99999887654 3689999999999999999999987542 3478999999999999999


Q ss_pred             HHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC------CCCCCCcEEEEECChhhHHhhhcccccCCC
Q 020296          235 KQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL------PSPSDDALILVCGPPGMMKHVSGEKAKDYS  307 (328)
Q Consensus       235 ~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~------~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~  307 (328)
                      .+||++++++++ ++++++++++++. +.+..|++++.+.+..+      .....+..||+|||++|+++++        
T Consensus       152 ~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~--------  222 (248)
T 1fdr_A          152 LPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQ--------  222 (248)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHH--------
T ss_pred             HHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHH--------
Confidence            999999998886 5999998887643 33467898865443221      1122468999999999999998        


Q ss_pred             cchHHHHH-hhcCCCCCCeE
Q 020296          308 QGELSGIL-KDLGYTEQMVY  326 (328)
Q Consensus       308 qg~~~~~L-~~~G~~~~~I~  326 (328)
                           +.| +++|+++++|+
T Consensus       223 -----~~l~~~~G~~~~~i~  237 (248)
T 1fdr_A          223 -----QLLKETRQMTKHLRR  237 (248)
T ss_dssp             -----HHHHHHHCCCBCBTT
T ss_pred             -----HHHHHHcCCChHHcC
Confidence                 899 99999999865

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=3.4e-40  Score=307.42  Aligned_cols=225  Identities=21%  Similarity=0.342  Sum_probs=197.1

Q ss_pred             CCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296           76 DKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY  154 (328)
Q Consensus        76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~  154 (328)
                      ..+..++|++++.+++++.+|+|+.+.. ....|.||||+.++++..        ...|+|||++.+. .+.++|+||.+
T Consensus       106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySi~s~~~-~~~l~~~vk~~  176 (338)
T 1krh_A          106 IHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGT--------TETRSYSFSSQPG-NRLTGFVVRNV  176 (338)
T ss_dssp             CEEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTS--------SCEEEEECCSCTT-CSEEEEEEECC
T ss_pred             ceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCC--------CccccccccCCCC-CCeEEEEEEEc
Confidence            4577899999999999999999998862 357899999999998642        3789999999987 79999999999


Q ss_pred             CCCccchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhh
Q 020296          155 PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDIL  233 (328)
Q Consensus       155 ~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~  233 (328)
                      ++|.+|+||+ ++++||+|.|.||+|+|.++++ .++++||||||||||+++|++++..++ ...+++|+|++|+.+|++
T Consensus       177 ~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~-~~~~v~l~~~~r~~~d~~  254 (338)
T 1krh_A          177 PQGKMSEYLSVQAKAGDKMSFTGPFGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG-SEHPVRLVFGVTQDCDLV  254 (338)
T ss_dssp             TTCHHHHHHHTTCCTTCEEEEEEEECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC-CSSCEEEEEEESSGGGCC
T ss_pred             CCCCchhhHhhccCCCCEEEEECCccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC-CCCeEEEEEEeCCHHHhh
Confidence            9999999996 8999999999999999987765 489999999999999999999998763 347899999999999999


Q ss_pred             hHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHH
Q 020296          234 LKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSG  313 (328)
Q Consensus       234 ~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~  313 (328)
                      +.+||++|+++++++++++++++++..|. ..|++++.+.++.++.  .+..||+|||++|+++++             +
T Consensus       255 ~~~el~~l~~~~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~~~~~--~~~~vy~CGp~~m~~~v~-------------~  318 (338)
T 1krh_A          255 ALEQLDALQQKLPWFEYRTVVAHAESQHE-RKGYVTGHIEYDWLNG--GEVDVYLCGPVPMVEAVR-------------S  318 (338)
T ss_dssp             CHHHHHHHHHHCTTEEEEEEETTCCSSSS-EESCSGGGCCGGGGGG--GCSEEEEEEEHHHHHHHH-------------H
T ss_pred             hHHHHHHHHHhCCCeEEEEEEecCCCCCC-ccCccCHHHHHhhccc--CCcEEEEECCHHHHHHHH-------------H
Confidence            99999999999999999999988776665 6789886544344443  357899999999999998             9


Q ss_pred             HHhhcCCCCCCeEe
Q 020296          314 ILKDLGYTEQMVYK  327 (328)
Q Consensus       314 ~L~~~G~~~~~I~~  327 (328)
                      .|+++|+++++||.
T Consensus       319 ~l~~~G~~~~~i~~  332 (338)
T 1krh_A          319 WLDTQGIQPANFLF  332 (338)
T ss_dssp             HHHHHTCCCSEEEE
T ss_pred             HHHHcCCCHHHEEE
Confidence            99999999999984

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=100.00  E-value=2.6e-39  Score=308.03  Aligned_cols=226  Identities=18%  Similarity=0.284  Sum_probs=197.4

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCC-----CcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEE
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKL-----GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDL  149 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~-----~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l  149 (328)
                      +..|++++|++++.+++++..|+|+.++....     .+.||||+.++++.++.  +......|+|||++.|.+ +.++|
T Consensus       146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~--~~~~~~~R~ySi~s~p~~-~~~~i  222 (399)
T 4g1v_A          146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQ--ENQYDALRHYSLCSASTK-NGLRF  222 (399)
T ss_dssp             SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCST--TCCSCEEEEEEBSCSCCT-TCEEE
T ss_pred             CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCC--CCccceeeeecccCCCCC-CeEEE
Confidence            78899999999999999999999998863333     89999999999854200  013357899999999864 88999


Q ss_pred             EEEEe------CCCccchhhh-cCCCCCEEEEEceeeccccCCC----CCceEEEEecCccHHHHHHHHHHHHhCCCCCC
Q 020296          150 LIKVY------PEGKMSQHFA-SLKPGDVVEVKGPIEKLRYSPN----MKKHIGMIAGGTGITPMLQVIEAILKNPDDNT  218 (328)
Q Consensus       150 ~Vk~~------~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~----~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~  218 (328)
                      .||.+      ++|.+|+||+ ++++||+|.|.||+|.|.++.+    ..++++||||||||||+++|++++..++ ..+
T Consensus       223 ~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~-~~~  301 (399)
T 4g1v_A          223 AVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN-PNR  301 (399)
T ss_dssp             EEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC-TTS
T ss_pred             EEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC-CCC
Confidence            99994      6899999997 8999999999999999988765    5789999999999999999999998764 347


Q ss_pred             eEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhh
Q 020296          219 QVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV  298 (328)
Q Consensus       219 ~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v  298 (328)
                      +|+++|++|+.+++++.+||+++.+++++++++++++++.       |+++.+.+.+.++.   +..||+|||++|++++
T Consensus       302 ~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~-------g~~~~~~l~~~~~~---~~~vyvCGp~~m~~~v  371 (399)
T 4g1v_A          302 PIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDTE-------PLINAAFLKEKSPA---HADVYTCGSLAFMQAM  371 (399)
T ss_dssp             CEEEEEEESSSTTSTTHHHHHHHHTTCSSEEEEEEETTTS-------CCCCHHHHHHHSCS---SCEEEEEECHHHHHHH
T ss_pred             CEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEeCCC-------CcccHHHHHhhCCC---CCEEEEECCHHHHHHH
Confidence            8999999999999999999999999999999999987653       78988888777654   5899999999999999


Q ss_pred             hcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          299 SGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       299 ~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      +             +.|+++|+++++||.
T Consensus       372 ~-------------~~L~~~Gv~~~~i~~  387 (399)
T 4g1v_A          372 I-------------GHLKELEHRDDMIHY  387 (399)
T ss_dssp             H-------------HHHHHTTCCGGGEEE
T ss_pred             H-------------HHHHHcCCCHHHeee
Confidence            8             999999999999985

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=100.00  E-value=4.2e-39  Score=291.26  Aligned_cols=224  Identities=17%  Similarity=0.230  Sum_probs=188.7

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      +..++|++++.+++++.+|+|+.++  ...+.||||+.++++..     .+....|+|||++.+.+ +.++|+||.+++|
T Consensus        16 ~~~~~V~~~~~~~~~~~~l~l~~~~--~~~~~pGQ~v~l~~~~~-----~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G   87 (272)
T 2bgi_A           16 PDAQTVTSVRHWTDTLFSFRVTRPQ--TLRFRSGEFVMIGLLDD-----NGKPIMRAYSIASPAWD-EELEFYSIKVPDG   87 (272)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECCT--TCCCCTTCEEEEEEECT-----TSCEEEEEEECCSCTTC-SEEEEEEECCTTC
T ss_pred             eEEEEEEEEEEcCCCEEEEEEeCCC--CCccCCCCEEEEEeccC-----CCCeeeeeeeeccCCCC-CeEEEEEEEccCC
Confidence            4679999999999999999999874  35799999999999843     24568999999999875 8999999999999


Q ss_pred             ccchhhhcCCCCCEEEEE-ceeeccccCCCC-CceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhH
Q 020296          158 KMSQHFASLKPGDVVEVK-GPIEKLRYSPNM-KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLK  235 (328)
Q Consensus       158 ~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~~-~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~  235 (328)
                      .+|+||+++++||+|.+. ||+|.|.++... .++++||||||||||+++|++++.... ...+++|+|++|+.+|++|.
T Consensus        88 ~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~  166 (272)
T 2bgi_A           88 PLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE-KFDEVIMMHACRTVAELEYG  166 (272)
T ss_dssp             TTHHHHTTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT-SCSEEEEEEEESSSGGGHHH
T ss_pred             CchhHHHhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhHH
Confidence            999999999999999999 999998876543 689999999999999999999987642 34789999999999999999


Q ss_pred             HHHH-HHHH-----hC--CCeEEEEEEeCCCCCCCCcccccCHHHHhhc------CCCC-CCCcEEEEECChhhHHhhhc
Q 020296          236 QKLD-ILAA-----SH--PNLKVFYTVDNPTKNWKGGVGYISKDTALKG------LPSP-SDDALILVCGPPGMMKHVSG  300 (328)
Q Consensus       236 ~el~-~l~~-----~~--~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~------~~~~-~~~~~v~vCGP~~m~~~v~g  300 (328)
                      +||+ +|++     ++  ++++++++++++.   .+..|++++.+.+..      ++.. .++..||+|||++|+++++ 
T Consensus       167 ~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v~-  242 (272)
T 2bgi_A          167 RQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFNVDVM-  242 (272)
T ss_dssp             HHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHHHHHH-
T ss_pred             HHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHHHHHH-
Confidence            9999 9987     55  5799998888763   346788886544322      2211 2468999999999999998 


Q ss_pred             ccccCCCcchHHHHHhhcCCCCCCeE
Q 020296          301 EKAKDYSQGELSGILKDLGYTEQMVY  326 (328)
Q Consensus       301 ~~~~~~~qg~~~~~L~~~G~~~~~I~  326 (328)
                                  +.|+++|+++++|+
T Consensus       243 ------------~~l~~~G~~~~~i~  256 (272)
T 2bgi_A          243 ------------KVLESYGLREGANS  256 (272)
T ss_dssp             ------------HHHHTTTCCBCBTT
T ss_pred             ------------HHHHHcCCChHHcC
Confidence                        99999999998764

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=100.00  E-value=2e-39  Score=290.91  Aligned_cols=224  Identities=19%  Similarity=0.301  Sum_probs=188.8

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      .|++++|++++.+++++.+|+|+.++  ...+.||||+.++++..      +....|+|||++.+.+ +.++|+||.+++
T Consensus         2 ~~~~~~V~~~~~~~~~~~~l~l~~~~--~~~~~pGq~v~l~~~~~------g~~~~R~ySi~s~~~~-~~~~~~i~~~~~   72 (257)
T 2qdx_A            2 NLYTERVLSVHHWNDTLFSFKTTRNP--GLRFKTGQFVMIGLEVD------GRPLMRAYSIASPNYE-EHLEFFSIKVPD   72 (257)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEECCT--TCCCCTTCEEEEEEEET------TEEEEEEEECCSCTTS-SEEEEEEECCTT
T ss_pred             ceEEEEEEEEEEcCCCeEEEEEeCCC--CCccCCCCEEEEEecCC------CCceeeeeEeecCCCC-CeEEEEEEEeCC
Confidence            58899999999999999999999774  35789999999999864      5568999999999875 899999999999


Q ss_pred             CccchhhhcCCCCCEEEEE-ceeeccccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhh
Q 020296          157 GKMSQHFASLKPGDVVEVK-GPIEKLRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILL  234 (328)
Q Consensus       157 G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~  234 (328)
                      |.+|+||+++++||+|.|. ||+|.|.++.. ..++++||||||||||+++|++++.... ...+++|+|++|+.+|+++
T Consensus        73 G~~s~~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~  151 (257)
T 2qdx_A           73 GPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE-RYEKVILVHGVRWVSELAY  151 (257)
T ss_dssp             CTTHHHHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH-HCSEEEEEEEESSGGGCTT
T ss_pred             CcchhHHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC-CCCeEEEEEEcCCHHHhHh
Confidence            9999999999999999999 99999887653 3689999999999999999999887542 2368999999999999999


Q ss_pred             HHHHH-HHHH-----hC--CCeEEEEEEeCCCCCCCCcccccCHHHHhhc------CC-CCCCCcEEEEECChhhHHhhh
Q 020296          235 KQKLD-ILAA-----SH--PNLKVFYTVDNPTKNWKGGVGYISKDTALKG------LP-SPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       235 ~~el~-~l~~-----~~--~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~------~~-~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      .+||+ +|++     ++  +++++++++++++   .+..|++++.+.+..      ++ ....+..||+|||++|+++++
T Consensus       152 ~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v~  228 (257)
T 2qdx_A          152 ADFITKVLPEHEYFGDQVKEKLIYYPLVTREP---FRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETS  228 (257)
T ss_dssp             HHHHHTTGGGCTTTHHHHHHHEEEEEEESSSC---CSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhchhhhccCCCcEEEEEEecCCC---cccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHHHHH
Confidence            99999 8876     43  4699988888763   245788886544322      22 112468999999999999998


Q ss_pred             cccccCCCcchHHHHHhhcCCCCC-------CeE
Q 020296          300 GEKAKDYSQGELSGILKDLGYTEQ-------MVY  326 (328)
Q Consensus       300 g~~~~~~~qg~~~~~L~~~G~~~~-------~I~  326 (328)
                                   +.|+++|++++       +|+
T Consensus       229 -------------~~l~~~G~~~~~~~~~~~~i~  249 (257)
T 2qdx_A          229 -------------AVLDSFGLKISPRMGEPGDYL  249 (257)
T ss_dssp             -------------HHHHHTTCCBCSSTTSCBSEE
T ss_pred             -------------HHHHHcCCChHHhcCCCCcEE
Confidence                         99999999999       886

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=100.00  E-value=1.7e-38  Score=292.64  Aligned_cols=223  Identities=22%  Similarity=0.322  Sum_probs=184.8

Q ss_pred             ccCCCCCeEEEEEEEEEEecCC-----eeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCc-cccccccCCcCCC--
Q 020296           71 IALNPDKWIGFKLQDTARVSHN-----SHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTK-YVVRPYTPISDTE--  142 (328)
Q Consensus        71 ~~l~~~~~~~~~v~~~~~~s~~-----~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~-~~~RpYTi~s~~~--  142 (328)
                      ....+.....++|++++.++++     +.+|+|+.+.  .+.|.||||+.|+++...   ..+. ...|+|||+|.|.  
T Consensus        26 ~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~---~~g~~~~~R~ySias~p~~~  100 (310)
T 3vo2_A           26 NKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG--EIPYREGQSIGIIADGED---KNGKPHKLRLYSIASSALGD  100 (310)
T ss_dssp             CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT--CCCCCTTCEEEEECSSBC---TTSCBCCCEEEECCSCTTTT
T ss_pred             eeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC--CCcccCCCEEEEECCCcC---CCCCcCcceeeecCCCCccc
Confidence            3456777789999999999998     9999999663  467999999999986531   1132 3689999999986  


Q ss_pred             --CCCeEEEEEEEeC---------CCccchhhhcCCCCCEEEEEceeeccccCC-CCCceEEEEecCccHHHHHHHHHHH
Q 020296          143 --AKGHFDLLIKVYP---------EGKMSQHFASLKPGDVVEVKGPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAI  210 (328)
Q Consensus       143 --~~~~l~l~Vk~~~---------~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l  210 (328)
                        +.+.++|+||.++         +|.+|+||+++++||+|.|.||+|.+.+.+ +..++++|||||||||||++|++++
T Consensus       101 ~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~  180 (310)
T 3vo2_A          101 FGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKM  180 (310)
T ss_dssp             TTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHH
Confidence              5689999999873         699999999999999999999999876543 4568999999999999999999999


Q ss_pred             HhCCCC----CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcCCC-----C
Q 020296          211 LKNPDD----NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS-----P  280 (328)
Q Consensus       211 ~~~~~~----~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~-----~  280 (328)
                      +....+    ..+++|+|++|+.+|++|.+||++|++++| +|++++++++++.+|.+.+++++.. +.+....     .
T Consensus       181 ~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~-l~~~~~~l~~~l~  259 (310)
T 3vo2_A          181 FLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTR-MAEYREELWELLK  259 (310)
T ss_dssp             HSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHH-HHTTHHHHHHHHT
T ss_pred             HHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHH-HHHHHHHHHHhcc
Confidence            865322    268999999999999999999999999998 6999999999888898888888743 3322110     1


Q ss_pred             CCCcEEEEECChhhHHhhh
Q 020296          281 SDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       281 ~~~~~v~vCGP~~m~~~v~  299 (328)
                      .++..||+|||++|+++++
T Consensus       260 ~~~~~vyvCGp~~M~~~v~  278 (310)
T 3vo2_A          260 KDNTYVYMCGLKGMEKGID  278 (310)
T ss_dssp             STTEEEEEEESTTHHHHHH
T ss_pred             cCCcEEEEeCCHHHHHHHH
Confidence            2368999999999999997

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=100.00  E-value=1.3e-38  Score=293.43  Aligned_cols=228  Identities=19%  Similarity=0.240  Sum_probs=181.8

Q ss_pred             CCccCCCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC
Q 020296           69 PKIALNPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA  143 (328)
Q Consensus        69 ~~~~l~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~  143 (328)
                      +.....+..+..++|++++.++     +++.+|+|+.+.  .+.|.||||+.|+++.......+.....|+|||+|.|.+
T Consensus        19 ~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~--~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~   96 (311)
T 3lo8_A           19 PLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYG   96 (311)
T ss_dssp             CCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT--SSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTT
T ss_pred             CccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC--CCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcc
Confidence            3445567788899999999999     999999999874  478999999999987631000012347899999999864


Q ss_pred             ----CCeEEEEEEEe-------------CCCccchhhhcCCCCCEEEEEceeeccccCC--CCCceEEEEecCccHHHHH
Q 020296          144 ----KGHFDLLIKVY-------------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP--NMKKHIGMIAGGTGITPML  204 (328)
Q Consensus       144 ----~~~l~l~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~--~~~~~ivlIAgGtGItP~~  204 (328)
                          .+.++|+||.+             ++|.+|+||+++++||+|.|.||+|.|.+.+  +..++++||||||||||++
T Consensus        97 ~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~  176 (311)
T 3lo8_A           97 DNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFR  176 (311)
T ss_dssp             TTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHH
T ss_pred             cCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHH
Confidence                48999999987             7899999999999999999999999987655  3578999999999999999


Q ss_pred             HHHHHHHhCCCC----CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC--
Q 020296          205 QVIEAILKNPDD----NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL--  277 (328)
Q Consensus       205 ~ll~~l~~~~~~----~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~--  277 (328)
                      +|+++++.+..+    ..+++|+|++|+.+|++|.+||++|.++++ ++++++++++++..|.+..++++.. +.+..  
T Consensus       177 s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~-l~~~~~~  255 (311)
T 3lo8_A          177 GYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDK-IEEYSDE  255 (311)
T ss_dssp             HHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHH-HHHTHHH
T ss_pred             HHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHH-HHHHHHH
Confidence            999999865322    258999999999999999999999999998 6999999999888888888888743 33221  


Q ss_pred             --CCCCCCcEEEEECChhhHHhhh
Q 020296          278 --PSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       278 --~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                        .....+..||+|||++|+++++
T Consensus       256 ~~~~~~~~~~vyvCGp~~m~~~v~  279 (311)
T 3lo8_A          256 IFKLLDGGAHIYFCGLKGMMPGIQ  279 (311)
T ss_dssp             HHHHHHTTCEEEEEECGGGHHHHH
T ss_pred             HHHhhcCCcEEEEECCHHHHHHHH
Confidence              0011358999999999999997

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=100.00  E-value=1.1e-39  Score=294.71  Aligned_cols=226  Identities=19%  Similarity=0.246  Sum_probs=186.6

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY  154 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~  154 (328)
                      ...|++++|++++.+++++.+++|+.+.  ...++||||+.++++..      +....|||||++.+. ++.++|+||++
T Consensus        16 ~~~~~~~~V~~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~------~~~~~r~ySi~s~~~-~~~~~~~v~~~   86 (271)
T 4fk8_A           16 MSKFDTATVLSVHHWTDTLFSFTCTRDQ--ALRFNNGEFTMVGLEVD------GKPLTRAYSIVSPNY-EEHLEFFSIKV   86 (271)
T ss_dssp             --CEEEEEEEEEEEEETTEEEEEECCCT--TCCCCTTCEEEEEEEET------TEEEEEEEECCSCTT-SSSEEEEEECC
T ss_pred             cccceeEEEEEEEEcCCCEEEEEEEcCC--CCCcCCCCEEEEEccCC------CceeeeeEeccCCCC-CCcEEEEEEEE
Confidence            4579999999999999999999998774  46899999999999865      566899999999886 47899999999


Q ss_pred             CCCccchhhhcCCCCCEEEEE-ceeeccccCC-CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296          155 PEGKMSQHFASLKPGDVVEVK-GPIEKLRYSP-NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI  232 (328)
Q Consensus       155 ~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~-~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~  232 (328)
                      ++|.+|+||+++++||+|.+. ||+|.|.++. +..++++||||||||||++++++++.... +..+++|+|++|+.+|+
T Consensus        87 ~~G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~  165 (271)
T 4fk8_A           87 QNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE-RFDKVVLTHTCRLKGEL  165 (271)
T ss_dssp             TTCTTHHHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH-HCSEEEEEECCCSHHHH
T ss_pred             CCCchhhHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC-CCCCEEEEEecCCHHHH
Confidence            999999999999999999999 9999988765 35789999999999999999999987542 23699999999999999


Q ss_pred             hhHHHHHHHHHhCC--------CeEEEEEEeCCCCCCCCcccccCHHHHhh----cC--C-CCCCCcEEEEECChhhHHh
Q 020296          233 LLKQKLDILAASHP--------NLKVFYTVDNPTKNWKGGVGYISKDTALK----GL--P-SPSDDALILVCGPPGMMKH  297 (328)
Q Consensus       233 ~~~~el~~l~~~~~--------~~~v~~~~~~~~~~~~g~~g~i~~~~l~~----~~--~-~~~~~~~v~vCGP~~m~~~  297 (328)
                      ++.+||+++.++++        +++++++++++..   +..|++++.+++.    .+  + ...++..||+|||++|+++
T Consensus       166 ~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~~~  242 (271)
T 4fk8_A          166 AYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKD  242 (271)
T ss_dssp             HHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHHHH
T ss_pred             hHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHHHH
Confidence            99999999988877        4777777666543   4568888655442    11  1 1224689999999999999


Q ss_pred             hhcccccCCCcchHHHHHhhcCCCCCCeE
Q 020296          298 VSGEKAKDYSQGELSGILKDLGYTEQMVY  326 (328)
Q Consensus       298 v~g~~~~~~~qg~~~~~L~~~G~~~~~I~  326 (328)
                      ++             +.|+++|+++++++
T Consensus       243 v~-------------~~l~~~gv~~~~i~  258 (271)
T 4fk8_A          243 TT-------------ELLKKAGLVEGKNS  258 (271)
T ss_dssp             HH-------------HHHHHTTCCBCBTT
T ss_pred             HH-------------HHHHHcCCchhhcC
Confidence            98             99999999998764

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=100.00  E-value=1.6e-38  Score=293.32  Aligned_cols=237  Identities=16%  Similarity=0.224  Sum_probs=189.2

Q ss_pred             CCCCeEEEEEEEEEEec-----CCeeEEEEEcCCCCCCCcccceEEEEEecCCCC-------------------------
Q 020296           74 NPDKWIGFKLQDTARVS-----HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD-------------------------  123 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s-----~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~-------------------------  123 (328)
                      .++.-..++|+++++++     +++..++|..+.  .+.|.+||++.+..+....                         
T Consensus        11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~--~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~   88 (316)
T 3jqq_A           11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG--LFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNN   88 (316)
T ss_dssp             CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT--CCCCCTTCEEEECTTCC---------------------------
T ss_pred             cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC--CcceecCcEeEEECCCcccccccccccccccccccccccccccc
Confidence            45555679999999998     889999998763  5899999999998765310                         


Q ss_pred             ---CCCCCccccccccCCcCCCCCCeEEEEEEEe------------CCCccchhhhcCCCCCEEEEEceeeccccCCC--
Q 020296          124 ---AEGNTKYVVRPYTPISDTEAKGHFDLLIKVY------------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSPN--  186 (328)
Q Consensus       124 ---~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~------------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~--  186 (328)
                         ...++...+|+|||+|.|.+ +.++|+||..            ++|.+|+||+++++||+|.|+||+|.|.++.+  
T Consensus        89 ~~~~~~~g~~~~R~ySIaS~p~~-~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~l~~~~~  167 (316)
T 3jqq_A           89 IALSHIKKQRCARLYSISSSNNM-ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDAI  167 (316)
T ss_dssp             --------CCCCEEEEBCSCTTS-SSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCCCCTTHH
T ss_pred             cccccCCCcccceeeecccCCCC-CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceEcCCccc
Confidence               01124568999999999875 7999999975            67999999999999999999999999988765  


Q ss_pred             -CCceEEEEecCccHHHHHHHHHHHHhCCC---------CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEe
Q 020296          187 -MKKHIGMIAGGTGITPMLQVIEAILKNPD---------DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVD  255 (328)
Q Consensus       187 -~~~~ivlIAgGtGItP~~~ll~~l~~~~~---------~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~  255 (328)
                       ..++++|||||||||||++|++++.....         ...+++|+|++|+.++++|.+||++|.++++ +++++++++
T Consensus       168 ~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~~~~~~s  247 (316)
T 3jqq_A          168 QKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFS  247 (316)
T ss_dssp             HHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEEG
T ss_pred             CCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCCCcEEEEEEEC
Confidence             36899999999999999999999987531         2478999999999999999999999999998 599999998


Q ss_pred             CCCCCCCCcccccCHHHHhhc--CCC--CCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC----CCCCeEe
Q 020296          256 NPTKNWKGGVGYISKDTALKG--LPS--PSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY----TEQMVYK  327 (328)
Q Consensus       256 ~~~~~~~g~~g~i~~~~l~~~--~~~--~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~----~~~~I~~  327 (328)
                      ++ .+|.+..|+++..+.+..  +.+  ...+..||+|||++|+++++             +.|+++|+    ++++||.
T Consensus       248 ~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~-------------~~l~~~G~~~~v~~~rih~  313 (316)
T 3jqq_A          248 YK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVM-------------DILKSHDQFDEKKKKRVHV  313 (316)
T ss_dssp             GG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHH-------------HHHHC----CHHHHTTEEE
T ss_pred             CC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHH-------------HHHHHcCCCcccccccEEE
Confidence            87 568888999986544321  000  01358999999999999998             99999994    8888874

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=100.00  E-value=3.1e-37  Score=284.65  Aligned_cols=223  Identities=20%  Similarity=0.280  Sum_probs=182.6

Q ss_pred             ccCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC-ccccccccCCcCCC--
Q 020296           71 IALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT-KYVVRPYTPISDTE--  142 (328)
Q Consensus        71 ~~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~-~~~~RpYTi~s~~~--  142 (328)
                      ..+.+..+..++|++++.+++     ++.+++|+.+..  ..|.||||+.++++..   +..+ ....|+|||++.+.  
T Consensus        30 ~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~~~~---~~~g~~~~~R~ySi~s~p~~~  104 (314)
T 1fnb_A           30 NKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE--IPYREGQSVGVIPDGE---DKNGKPHKLRLYSIASSALGD  104 (314)
T ss_dssp             CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC--CCCCTTCEEEEECSSB---CTTSSBCCCEEEECCSCSSCT
T ss_pred             cccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC--CCcCCCCEEEEecCCC---CcCCCcCCceeEecCCCCccc
Confidence            445567778899999999998     899999998752  6799999999997652   0012 34789999999885  


Q ss_pred             --CCCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeecccc-CCCCCceEEEEecCccHHHHHHHHHHH
Q 020296          143 --AKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRY-SPNMKKHIGMIAGGTGITPMLQVIEAI  210 (328)
Q Consensus       143 --~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~-~~~~~~~ivlIAgGtGItP~~~ll~~l  210 (328)
                        +.+.++|+||.+         ++|.+|+||+++++||+|.|.||+|.|.. +.+..++++||||||||||+++|++++
T Consensus       105 ~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~  184 (314)
T 1fnb_A          105 FGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKM  184 (314)
T ss_dssp             TSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHH
Confidence              358999999975         57999999999999999999999998754 333468999999999999999999999


Q ss_pred             HhCCC----CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhcC----CCC-
Q 020296          211 LKNPD----DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGL----PSP-  280 (328)
Q Consensus       211 ~~~~~----~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~----~~~-  280 (328)
                      +....    ...+++|+|++|+.+|++|.+||+++.++++ ++++++++++++++|.+..|+++. .+.+.+    ... 
T Consensus       185 ~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~-~l~~~~~~~~~~~~  263 (314)
T 1fnb_A          185 FFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQT-RMAQYAVELWEMLK  263 (314)
T ss_dssp             HTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHH-HHHTTHHHHHHHTT
T ss_pred             HHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechH-HHHHhHHHHHHHHh
Confidence            86532    1368999999999999999999999999988 599999999887888888888874 333211    001 


Q ss_pred             CCCcEEEEECChhhHHhhh
Q 020296          281 SDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       281 ~~~~~v~vCGP~~m~~~v~  299 (328)
                      .++..||+|||++|+++++
T Consensus       264 ~~~~~vyvCGp~~m~~~v~  282 (314)
T 1fnb_A          264 KDNTYVYMCGLKGMEKGID  282 (314)
T ss_dssp             STTEEEEEEECTTHHHHHH
T ss_pred             cCCeEEEEECCHHHHHHHH
Confidence            1358899999999999997

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=100.00  E-value=1.3e-37  Score=280.02  Aligned_cols=207  Identities=18%  Similarity=0.201  Sum_probs=177.4

Q ss_pred             EEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCCcc
Q 020296           80 GFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKM  159 (328)
Q Consensus        80 ~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G~~  159 (328)
                      +++|++++.+++++.+|+|+.+. ....+.||||+.++++..      +....|+|||++.+.+.+.++|+||.++.|.+
T Consensus         7 ~~~V~~~~~~t~~~~~l~l~~~~-~~~~~~pGQ~v~l~~~~~------~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~   79 (262)
T 1ep3_B            7 MMTVVSQREVAYNIFEMVLKGTL-VDEMDLPGQFLHLAVPNG------AMLLRRPISISSWDKRAKTCTILYRIGDETTG   79 (262)
T ss_dssp             EEEEEEEEEEETTEEEEEEESGG-GGGCCSTTCEEEECCSCT------TCCSCEEEECCEEETTTTEEEEEEECCCTTSH
T ss_pred             ceEEEEEEEecCCEEEEEEEcCc-ccccCCCCceEEEEcCCC------CceeeEEEEeeeecCCCCEEEEEEEEecCCch
Confidence            79999999999999999999874 245789999999998753      35689999999998777999999999888999


Q ss_pred             chhhhcCCCCCEEEEEceeec-cccCCC-CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHH
Q 020296          160 SQHFASLKPGDVVEVKGPIEK-LRYSPN-MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQK  237 (328)
Q Consensus       160 S~~L~~l~~Gd~v~v~GP~G~-~~~~~~-~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~e  237 (328)
                      |+||+++++||+|.+.||+|+ |.++.+ ..++++||||||||||+++|++++..+.   .+++|+|++|+.+|+++.+|
T Consensus        80 S~~l~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r~~~~~~~~~e  156 (262)
T 1ep3_B           80 TYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKILENE  156 (262)
T ss_dssp             HHHHHTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCCHHH
T ss_pred             HHHHhcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHH
Confidence            999999999999999999999 887654 4689999999999999999999998752   68999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhh
Q 020296          238 LDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKD  317 (328)
Q Consensus       238 l~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~  317 (328)
                      |++|+..    +++++.   ++.|.+..|++++ .+++.+++   ...||+|||++|+++++             + |++
T Consensus       157 l~~l~~~----~~~~~~---~~~~~~~~g~v~~-~l~~~~~~---~~~vyvCGp~~m~~~v~-------------~-l~~  211 (262)
T 1ep3_B          157 FSNLKNV----TLKIAT---DDGSYGTKGHVGM-LMNEIDFE---VDALYTCGAPAMLKAVA-------------K-KYD  211 (262)
T ss_dssp             HHTSTTE----EEEEEE---TTCSSSEESCHHH-HHHHCCSC---CSEEEEESCHHHHHHHH-------------H-HTT
T ss_pred             HhhhccC----cEEEEE---CCCCCcceeehHH-HHHhhccC---CCEEEEECCHHHHHHHH-------------H-HHh
Confidence            9987532    444432   2346677899985 67665543   47999999999999998             8 999


Q ss_pred             cCCC
Q 020296          318 LGYT  321 (328)
Q Consensus       318 ~G~~  321 (328)
                      +|++
T Consensus       212 ~gv~  215 (262)
T 1ep3_B          212 QLER  215 (262)
T ss_dssp             TCSS
T ss_pred             CCCC
Confidence            9998

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=100.00  E-value=5e-37  Score=292.15  Aligned_cols=222  Identities=21%  Similarity=0.319  Sum_probs=183.2

Q ss_pred             ccCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC-ccccccccCCcCCCC-
Q 020296           71 IALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT-KYVVRPYTPISDTEA-  143 (328)
Q Consensus        71 ~~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~-~~~~RpYTi~s~~~~-  143 (328)
                      ..+.+..+..++|++++.+++     ++..|+|+.+.. ...|.||||+.|+++..   +..+ ....|+|||++.+.+ 
T Consensus       115 ~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~~pGQ~v~l~~~~~---~~~g~~~~~R~ySIas~p~~~  190 (402)
T 2b5o_A          115 NIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG-DLRYLEGQSIGIIPPGE---DKNGKPHKLRLYSIASTRHGD  190 (402)
T ss_dssp             CSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS-CCCCCTTCEEEEECSSE---ETTTEECCCEEEEBCSCTTTT
T ss_pred             ccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC-CCCcCCCCEEEEEecCC---CcCCCccCceeeeccCCCccc
Confidence            345566677899999999999     999999998742 47899999999997642   0012 247899999998863 


Q ss_pred             ---CCeEEEEEEEe----------CCCccchhhhcCCCC-CEEEEEceeecccc-CCCCCceEEEEecCccHHHHHHHHH
Q 020296          144 ---KGHFDLLIKVY----------PEGKMSQHFASLKPG-DVVEVKGPIEKLRY-SPNMKKHIGMIAGGTGITPMLQVIE  208 (328)
Q Consensus       144 ---~~~l~l~Vk~~----------~~G~~S~~L~~l~~G-d~v~v~GP~G~~~~-~~~~~~~ivlIAgGtGItP~~~ll~  208 (328)
                         .+.++|+||..          +.|.+|+||+++++| |+|.|.||+|+|.. +.+..++++||||||||||+++|++
T Consensus       191 ~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~  270 (402)
T 2b5o_A          191 MEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLW  270 (402)
T ss_dssp             TTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHH
T ss_pred             cCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHH
Confidence               68999999983          469999999999999 99999999998754 4345689999999999999999999


Q ss_pred             HHHhCCCC----CCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHhhc-------
Q 020296          209 AILKNPDD----NTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKG-------  276 (328)
Q Consensus       209 ~l~~~~~~----~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~-------  276 (328)
                      +++....+    ..+++|+|++|+.+|++|.+||++|.++++ ++++++++++++++|.+..++++.. +.+.       
T Consensus       271 ~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~-l~~~~~~l~~~  349 (402)
T 2b5o_A          271 RMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSR-VSEYADELFEM  349 (402)
T ss_dssp             HHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHH-HHHTHHHHHHH
T ss_pred             HHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHH-HHHhHHHHHHH
Confidence            99876421    368999999999999999999999999998 6999999998877888888888743 3321       


Q ss_pred             CCCCCCCcEEEEECChhhHHhhh
Q 020296          277 LPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       277 ~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      +.  ..+..||+|||++|+++++
T Consensus       350 l~--~~~~~vyvCGP~~M~~~v~  370 (402)
T 2b5o_A          350 IQ--KPNTHVYMCGLKGMQPPID  370 (402)
T ss_dssp             HT--STTEEEEEEECGGGHHHHH
T ss_pred             hc--cCCcEEEEECCHHHHHHHH
Confidence            21  1358999999999999997

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=8.7e-37  Score=282.48  Aligned_cols=216  Identities=18%  Similarity=0.304  Sum_probs=179.4

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCCC-CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDPS-AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~-~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      .++.|+.++|++++.++++++.|+|+.++. ....|.||||+.++++.       +  ..|+|||++.+.+.+.++|.||
T Consensus         4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~-------g--~~R~ySi~s~~~~~~~l~i~Vk   74 (321)
T 2pia_A            4 QEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPN-------G--SRRTYSLCNDSQERNRYVIAVK   74 (321)
T ss_dssp             TTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTT-------S--CEEEEECCSCTTCCSEEEEEEE
T ss_pred             CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCC-------C--CcEEEEeCCCCCCCCeEEEEEE
Confidence            356789999999999999999999998863 34589999999999863       3  8899999999987789999999


Q ss_pred             EeCCCc-cchhhh-cCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCc
Q 020296          153 VYPEGK-MSQHFA-SLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPD  230 (328)
Q Consensus       153 ~~~~G~-~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~  230 (328)
                      .+++|. +|+||+ ++++||+|.|.||+|.|.++++ .++++||||||||||+++|++++...+ . .+++|+|++|+.+
T Consensus        75 ~~~~G~g~S~~L~~~l~~Gd~v~v~gP~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~-~-~~v~l~~~~r~~~  151 (321)
T 2pia_A           75 RDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG-L-RSFRLYYLTRDPE  151 (321)
T ss_dssp             CCTTSCSHHHHHHHSCCTTCEEEECCCBCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC-S-SEEEEEEEESCGG
T ss_pred             EecCCcchhHHHHhcCCCCCEEEEeCCccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC-C-CcEEEEEEECChh
Confidence            999998 999999 8999999999999999988764 689999999999999999999998764 2 6899999999999


Q ss_pred             hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcch
Q 020296          231 DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGE  310 (328)
Q Consensus       231 d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~  310 (328)
                      +++|.+||++|+ ..+++++++  +....     .|++..+.+.+.   ...+..||+|||++|+++++           
T Consensus       152 ~~~~~~el~~l~-~~~~~~~~~--~~~~~-----~g~~~~~~ll~~---~~~~~~vyvCGP~~m~~~v~-----------  209 (321)
T 2pia_A          152 GTAFFDELTSDE-WRSDVKIHH--DHGDP-----TKAFDFWSVFEK---SKPAQHVYCCGPQALMDTVR-----------  209 (321)
T ss_dssp             GCTTHHHHHSTT-TTTTEEEEE--CTTCT-----TSCCCHHHHHSS---CCTTEEEEEESCHHHHHHHH-----------
T ss_pred             hhHHHHHHhcCc-cCCeEEEEE--CCCcc-----cCccCHHHHhcc---cCCCCEEEEECCHHHHHHHH-----------
Confidence            999999999886 334577754  33221     234432222222   22468999999999999998           


Q ss_pred             HHHHHhhcCCCCCCeEe
Q 020296          311 LSGILKDLGYTEQMVYK  327 (328)
Q Consensus       311 ~~~~L~~~G~~~~~I~~  327 (328)
                        ..|++  +++++||.
T Consensus       210 --~~l~~--~~~~~i~~  222 (321)
T 2pia_A          210 --DMTGH--WPSGTVHF  222 (321)
T ss_dssp             --HHTTT--SCTTCEEE
T ss_pred             --HHHHh--CCHhhEEE
Confidence              88877  89999984

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=100.00  E-value=2.9e-36  Score=276.83  Aligned_cols=236  Identities=23%  Similarity=0.341  Sum_probs=185.4

Q ss_pred             cCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCC-ccccccccCCcCCC---
Q 020296           72 ALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNT-KYVVRPYTPISDTE---  142 (328)
Q Consensus        72 ~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~-~~~~RpYTi~s~~~---  142 (328)
                      ...+.....++|++++.+++     ++.+++|+++.. ...+.||||+.+.++..   +..+ ....|+|||+|.+.   
T Consensus        15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~-~~~~~pGQ~v~l~~~~~---~~~g~~~~~R~ySias~~~~~~   90 (304)
T 2bmw_A           15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG-NLKYIEGQSIGIIPPGV---DKNGKPEKLRLYSIASTRHGDD   90 (304)
T ss_dssp             SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS-CCCCCTTCEEEEECSSB---CTTSCBCCCEEEEBCSCTTTTT
T ss_pred             ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-ccccCCCCEEEEEcCCC---cccCCCCCCcceecCCCCcccC
Confidence            34456666899999999999     899999998752 36899999999997643   0012 24689999999875   


Q ss_pred             -CCCeEEEEEEEe----------CCCccchhhhcCCCCCEEEEEceeecccc-CCCCCceEEEEecCccHHHHHHHHHHH
Q 020296          143 -AKGHFDLLIKVY----------PEGKMSQHFASLKPGDVVEVKGPIEKLRY-SPNMKKHIGMIAGGTGITPMLQVIEAI  210 (328)
Q Consensus       143 -~~~~l~l~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~-~~~~~~~ivlIAgGtGItP~~~ll~~l  210 (328)
                       +.+.++|+||..          +.|.+|+||+++++||+|.|.||+|.+.. +.+..++++||||||||||++++++++
T Consensus        91 ~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~  170 (304)
T 2bmw_A           91 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRM  170 (304)
T ss_dssp             TSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHH
Confidence             368999999982          35899999999999999999999998653 434568999999999999999999998


Q ss_pred             HhCC------C--CCCeEEEEEeeCCCchhhhHHHHHHHHHhCC-CeEEEEEEeCCCCCCCCcccccCHHHHh------h
Q 020296          211 LKNP------D--DNTQVSLLYGNISPDDILLKQKLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTAL------K  275 (328)
Q Consensus       211 ~~~~------~--~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~-~~~v~~~~~~~~~~~~g~~g~i~~~~l~------~  275 (328)
                      +...      .  ...+++|+|++|+.+|++|.+||+++.++++ +++++++++++.+.|.+..++++..+.+      +
T Consensus       171 ~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~  250 (304)
T 2bmw_A          171 FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ  250 (304)
T ss_dssp             HCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHH
T ss_pred             HHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHH
Confidence            7542      0  1368999999999999999999999999988 6999999998877777777776532221      1


Q ss_pred             cCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCC
Q 020296          276 GLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE  322 (328)
Q Consensus       276 ~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~  322 (328)
                      .+..  .+..||+|||++|+++++..         +..++.+.|++.
T Consensus       251 ~~~~--~~~~vyvCGp~~m~~~v~~~---------l~~~~~~~g~~~  286 (304)
T 2bmw_A          251 LIKN--QKTHTYICGPPPMEEGIDAA---------LSAAAAKEGVTW  286 (304)
T ss_dssp             HHTS--TTEEEEEEECTTHHHHHHHH---------HHHHHHTTTCCH
T ss_pred             Hhhc--CCcEEEEECCHHHHHHHHHH---------HHHHHHHcCccH
Confidence            1222  35789999999999998622         234556667654

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=100.00  E-value=4e-36  Score=277.13  Aligned_cols=228  Identities=25%  Similarity=0.380  Sum_probs=183.1

Q ss_pred             CCCCCeEEEEEEEEEEecCC--------------eeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCc--------c
Q 020296           73 LNPDKWIGFKLQDTARVSHN--------------SHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTK--------Y  130 (328)
Q Consensus        73 l~~~~~~~~~v~~~~~~s~~--------------~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~--------~  130 (328)
                      ..+.....++|++++.++++              +.+++|+.+. ....+.||||+.|+++...   ..+.        .
T Consensus        16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~-~~~~~~pGQ~v~l~~~~~~---~~g~~~~~~~~~~   91 (314)
T 2rc5_A           16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDH-SAYPYVIGQSGGVIPPGED---PEKKAKGLADVGY   91 (314)
T ss_dssp             BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCT-TTCCCCTTCEEEEECSSBC---HHHHHTTCSCCBC
T ss_pred             CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCC-CcCcccCCCEEEEECCCCc---cccCccchhhcCC
Confidence            34455678999999999998              9999999874 3467999999999976430   0011        3


Q ss_pred             ccccccCCcCCC----CCCeEEEEEEEe----------CCCccchhhhcCCCCCEEEEEceeeccccCC--CCCceEEEE
Q 020296          131 VVRPYTPISDTE----AKGHFDLLIKVY----------PEGKMSQHFASLKPGDVVEVKGPIEKLRYSP--NMKKHIGMI  194 (328)
Q Consensus       131 ~~RpYTi~s~~~----~~~~l~l~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~--~~~~~ivlI  194 (328)
                      ..|+|||++.+.    +.+.++|+||.+          ++|.+|+||+++++||+|.|.||+|.|...+  +..++++||
T Consensus        92 ~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlI  171 (314)
T 2rc5_A           92 TVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFL  171 (314)
T ss_dssp             CCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSSCBCSCEEEE
T ss_pred             CceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCCCCCCCEEEE
Confidence            679999999985    468999999997          3688999999999999999999999976544  346899999


Q ss_pred             ecCccHHHHHHHHHHHHhCCC--CCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCC-CCCcccccCHH
Q 020296          195 AGGTGITPMLQVIEAILKNPD--DNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKN-WKGGVGYISKD  271 (328)
Q Consensus       195 AgGtGItP~~~ll~~l~~~~~--~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~-~~g~~g~i~~~  271 (328)
                      ||||||||+++|++++.....  ...+++|+|++|+.+|++|.+||+++.+++++++++++++++... |.+..|+++..
T Consensus       172 agGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~  251 (314)
T 2rc5_A          172 ATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHR  251 (314)
T ss_dssp             EEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHH
T ss_pred             ECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHH
Confidence            999999999999999986532  236899999999999999999999999888899999999887554 47777887743


Q ss_pred             HHh------hcCCCCCCCcEEEEE-CChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296          272 TAL------KGLPSPSDDALILVC-GPPGMMKHVSGEKAKDYSQGELSGILKDLGY  320 (328)
Q Consensus       272 ~l~------~~~~~~~~~~~v~vC-GP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~  320 (328)
                      +.+      +.++.  . ..+|+| ||++|+++++             ..|.++|+
T Consensus       252 l~~~~~~l~~~~~~--~-~~~yvCGGp~~m~~~v~-------------~~L~~~g~  291 (314)
T 2rc5_A          252 VREQAEAVKKILNG--G-GRFYICGGPKGMEKGVI-------------EEIQKISG  291 (314)
T ss_dssp             HHHTHHHHHHHHHH--T-CEEEEEESSTTTHHHHH-------------HHHHHHHT
T ss_pred             HHHhHHHHHHHhhc--C-CeEEEeCCcHHHHHHHH-------------HHHHHHHh
Confidence            322      11211  2 335999 9999999998             88888887

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=100.00  E-value=8.2e-34  Score=253.78  Aligned_cols=216  Identities=10%  Similarity=0.073  Sum_probs=171.1

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEE
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV  153 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~  153 (328)
                      +..|+.++|++++.+++++++|+|+.++ .....+.|||||.++++..     .+....|+||+++.+.  +.++|.|+.
T Consensus         5 ~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~-----~~~~~~R~YSi~~~~~--~~~~i~~~~   77 (252)
T 2gpj_A            5 KPAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQA-----GERPLMRTYTIRQQRD--DEIDVDFVL   77 (252)
T ss_dssp             -CCCEEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCT-----TSCCEEEEEECCEEET--TEEEEEEEC
T ss_pred             CCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccC-----CCCCCCCceeeeccCC--CEEEEEEEE
Confidence            4568899999999999999999999876 3334689999999999853     2456899999999765  789999988


Q ss_pred             eCC-CccchhhhcCCCCCEEEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchh
Q 020296          154 YPE-GKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDI  232 (328)
Q Consensus       154 ~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~  232 (328)
                      +++ |.+|+||+++++||+|.|.||.|.|.+++. .++++|||||||||||++|++++...    .++++++++++.+|+
T Consensus        78 ~~~~G~~S~~l~~l~~Gd~l~v~gP~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~~----~~~~~~~~~~~~~d~  152 (252)
T 2gpj_A           78 HDTDGPASSWAKTAQVGELIQIGGPGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPNN----AVGYAVIEVLSEADI  152 (252)
T ss_dssp             CSSCCHHHHHHHHCCTTCEEEEEEEECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCTT----CEEEEEEEESSGGGC
T ss_pred             eCCCCcHHHHHhhCCCCCEEEEecCCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCCC----CcEEEEEEECCHHHh
Confidence            876 999999999999999999999999988654 57899999999999999999998432    578899999998886


Q ss_pred             hhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHH
Q 020296          233 LLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS  312 (328)
Q Consensus       233 ~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~  312 (328)
                      ...+       ..++++++++.+.... +.   |....+.+.+.. .+..+..+|+|||++||++++             
T Consensus       153 ~~l~-------~~~~~~v~~~~~~~~~-~~---g~~~~~~l~~~~-~~~~~~~vy~CGP~~m~~av~-------------  207 (252)
T 2gpj_A          153 QPLV-------HPEHVELHWVINPEAD-PE---GRPLVERIAQLP-WLAGEPAVWIACEFNSMRALR-------------  207 (252)
T ss_dssp             CCCC-------CCTEEEEEEEECSSCC-TT---CHHHHHHHTTSC-CCSSCEEEEEEEEHHHHHHHH-------------
T ss_pred             hccc-------CCCCcEEEEEeCCCCC-cc---cHHHHHHHHhcc-CCCCCcEEEEEcCHHHHHHHH-------------
Confidence            5321       2345888887755422 11   222234454431 122357899999999999998             


Q ss_pred             HHHh-hcCCCCCCeEe
Q 020296          313 GILK-DLGYTEQMVYK  327 (328)
Q Consensus       313 ~~L~-~~G~~~~~I~~  327 (328)
                      ..|. ++|+++++||.
T Consensus       208 ~~l~~~~G~~~~~i~~  223 (252)
T 2gpj_A          208 RHFKQAHALPKSHFYT  223 (252)
T ss_dssp             HHHHHHCCCCGGGEEE
T ss_pred             HHHHHhcCCCHHHeEE
Confidence            8887 89999999984

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.96  E-value=3.6e-30  Score=242.33  Aligned_cols=175  Identities=22%  Similarity=0.267  Sum_probs=144.4

Q ss_pred             CcccceEEEEEecCCCCCCCCCccccccccCCcCCCC-CCeEEEEEEEe--------CCCccchhhhc-CCCCCEEEEEc
Q 020296          107 GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA-KGHFDLLIKVY--------PEGKMSQHFAS-LKPGDVVEVKG  176 (328)
Q Consensus       107 ~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~~-l~~Gd~v~v~G  176 (328)
                      .+.+|||+.+..+          ...|+|||+|+|.+ .+.++|+||.+        ++|.+|+||++ +++||+|.+.|
T Consensus       145 ~~~~Gq~v~l~~~----------~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~  214 (374)
T 1ddg_A          145 QLDAEALINLLRP----------LTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFI  214 (374)
T ss_dssp             CCCHHHHHHHSCB----------CCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEE
T ss_pred             CCCHHHHHhhccC----------CCCccceecCCCCCCCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEE
Confidence            7899999987643          27899999999875 78999999987        67999999997 99999999999


Q ss_pred             -eeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEE
Q 020296          177 -PIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTV  254 (328)
Q Consensus       177 -P~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~  254 (328)
                       |.|.|.++.+...+++|||||||||||+++++++.... ...+++|+|++|+. +|++|.+||+++.+.++.++++++.
T Consensus       215 ~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~  293 (374)
T 1ddg_A          215 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADE-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAW  293 (374)
T ss_dssp             ECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEE
T ss_pred             eeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEEEEE
Confidence             55689887766789999999999999999999988653 34789999999998 7999999999999888778998888


Q ss_pred             eCCCCCCCCcccccCHHHHh------hcCCCCCCCcEEEEEC-ChhhHHhhh
Q 020296          255 DNPTKNWKGGVGYISKDTAL------KGLPSPSDDALILVCG-PPGMMKHVS  299 (328)
Q Consensus       255 ~~~~~~~~g~~g~i~~~~l~------~~~~~~~~~~~v~vCG-P~~m~~~v~  299 (328)
                      +++..    .+++++..+.+      +.+.   ++..||||| |++|++++.
T Consensus       294 Srd~~----~k~yVq~~l~~~~~~l~~~l~---~~~~vYvCG~p~~M~~~V~  338 (374)
T 1ddg_A          294 SRDQK----EKVYVQDKLREQGAELWRWIN---DGAHIYVCGDANRMAKDVE  338 (374)
T ss_dssp             TTSSS----SCCCHHHHHHHTHHHHHHHHH---TTCEEEEEECTTTHHHHHH
T ss_pred             ecCCC----CCccHHHHHHHhHHHHHHHHh---CCcEEEEECCCHHHHHHHH
Confidence            87653    23555432221      1221   258999999 999999997

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.95  E-value=1.2e-27  Score=229.25  Aligned_cols=165  Identities=16%  Similarity=0.187  Sum_probs=132.4

Q ss_pred             ccccccCCcCCCC-CCeEEEEEEEe----C-------CCccchhhhcCCCCCEEEEEc-eeeccccCCCCCceEEEEecC
Q 020296          131 VVRPYTPISDTEA-KGHFDLLIKVY----P-------EGKMSQHFASLKPGDVVEVKG-PIEKLRYSPNMKKHIGMIAGG  197 (328)
Q Consensus       131 ~~RpYTi~s~~~~-~~~l~l~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~G-P~G~~~~~~~~~~~ivlIAgG  197 (328)
                      ..|+|||+|+|.+ .+.++|+|+.+    +       .|.+|+||+++++||+|.|.| |.|.|.++.+...+++|||||
T Consensus       209 ~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~~~~~piilIagG  288 (435)
T 1f20_A          209 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG  288 (435)
T ss_dssp             CCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCSCTTSCEEEECCG
T ss_pred             CCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCCCCCCCEEEEECC
Confidence            5699999999875 68999999864    2       388999999999999999999 667998887667899999999


Q ss_pred             ccHHHHHHHHHHHHhC----CCCCCeEEEEEeeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH
Q 020296          198 TGITPMLQVIEAILKN----PDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT  272 (328)
Q Consensus       198 tGItP~~~ll~~l~~~----~~~~~~i~L~~~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~  272 (328)
                      ||||||++|++++...    .....+++|+|++|+.+ |++|.+||++|.+.++.++++.++++++..+   +++++.. 
T Consensus       289 tGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr~~~~~---k~yVq~~-  364 (435)
T 1f20_A          289 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---KKYVQDV-  364 (435)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---CCCHHHH-
T ss_pred             cCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCccEEEEEECCCCCCC---CcchhhH-
Confidence            9999999999998753    12347899999999997 7899999999998877788988888875433   4566532 


Q ss_pred             HhhcCC-----CC-CCCcEEEEECChhhHHhhh
Q 020296          273 ALKGLP-----SP-SDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       273 l~~~~~-----~~-~~~~~v~vCGP~~m~~~v~  299 (328)
                      +.+.+.     .. .++..||||||++|++++.
T Consensus       365 l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~  397 (435)
T 1f20_A          365 LQEQLAESVYRALKEQGGHIYVCGDVTMAADVL  397 (435)
T ss_dssp             HHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHH
T ss_pred             HHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHH
Confidence            222110     00 1357899999999999997

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.94  E-value=4.6e-27  Score=222.30  Aligned_cols=163  Identities=18%  Similarity=0.300  Sum_probs=129.7

Q ss_pred             cccccccCCcCCCC-CCeEEEEEEEeCC----------CccchhhhcCCCCCEEE--EEceeeccccCCCCCceEEEEec
Q 020296          130 YVVRPYTPISDTEA-KGHFDLLIKVYPE----------GKMSQHFASLKPGDVVE--VKGPIEKLRYSPNMKKHIGMIAG  196 (328)
Q Consensus       130 ~~~RpYTi~s~~~~-~~~l~l~Vk~~~~----------G~~S~~L~~l~~Gd~v~--v~GP~G~~~~~~~~~~~ivlIAg  196 (328)
                      ...|+|||+|+|.. .+.++|+|+.++.          |.+|+||+++++||+|.  |+||+|.|.++.+...+++||||
T Consensus       169 l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp~~~~~piImIg~  248 (393)
T 4dql_A          169 IRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGP  248 (393)
T ss_dssp             CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSSCCCCCSSTTSCEEEECC
T ss_pred             CcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCCCcccCccCCCCeEEEcc
Confidence            47899999999875 5899999997743          88999999999999998  78999999998776789999999


Q ss_pred             CccHHHHHHHHHHH---HhCCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH
Q 020296          197 GTGITPMLQVIEAI---LKNPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT  272 (328)
Q Consensus       197 GtGItP~~~ll~~l---~~~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~  272 (328)
                      |||||||++++++.   ...+.+..+++|+|++|+ .+|++|.+||+++.+. ++++++.+.++++..   .+++++..+
T Consensus       249 GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~l~l~~a~Sr~~~~---~k~yVq~~l  324 (393)
T 4dql_A          249 GTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GIITLHTAFSRMPNQ---PKTYVQHVM  324 (393)
T ss_dssp             GGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSCEEEEEESSCTTS---CCCCHHHHH
T ss_pred             CceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CCeEEEEEEeCCCCC---CCcchhhHH
Confidence            99999999999984   334334468999999999 5899999999999875 668999998885432   245554322


Q ss_pred             ------HhhcCCCCCCCcEEEEECCh-hhHHhhh
Q 020296          273 ------ALKGLPSPSDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       273 ------l~~~~~~~~~~~~v~vCGP~-~m~~~v~  299 (328)
                            +.+.+   .++..||||||. .|.++++
T Consensus       325 ~~~~~~l~~~l---~~~~~vYvCGp~~~M~~~V~  355 (393)
T 4dql_A          325 EQDGKKLIELL---DQGAHFYICGDGSQMAPAVE  355 (393)
T ss_dssp             HHTHHHHHHHH---HTTCEEEEEEETTTHHHHHH
T ss_pred             HhCHHHHHHHH---hCCcEEEEECCchhhHHHHH
Confidence                  11122   135899999995 5666776

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.94  E-value=2.2e-27  Score=232.45  Aligned_cols=168  Identities=18%  Similarity=0.258  Sum_probs=131.7

Q ss_pred             ccccccCCcCCC-CCCeEEEEEEEe-----------CCCccchhhhcC-----------CCCC-------EEEEEceee-
Q 020296          131 VVRPYTPISDTE-AKGHFDLLIKVY-----------PEGKMSQHFASL-----------KPGD-------VVEVKGPIE-  179 (328)
Q Consensus       131 ~~RpYTi~s~~~-~~~~l~l~Vk~~-----------~~G~~S~~L~~l-----------~~Gd-------~v~v~GP~G-  179 (328)
                      ..|+|||+|++. +.+.++|+||.+           ++|.+|+||+++           ++||       .|.|.||.| 
T Consensus       290 ~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~  369 (539)
T 2qtl_A          290 QPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTN  369 (539)
T ss_dssp             CCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSCC
T ss_pred             cceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCC
Confidence            569999999986 478999999987           458999999976           8999       999999986 


Q ss_pred             ccccCCCCCceEEEEecCccHHHHHHHHHHHHhC---C--CCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEE
Q 020296          180 KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKN---P--DDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYT  253 (328)
Q Consensus       180 ~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~---~--~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~  253 (328)
                      .|.++.+...+++|||||||||||+++++++...   .  ....+++|||++|+. +|++|.+||++|.+.++.++++++
T Consensus       370 ~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~~~l~~a  449 (539)
T 2qtl_A          370 SFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVS  449 (539)
T ss_dssp             CCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSCEEEEE
T ss_pred             CccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCCcEEEEE
Confidence            8988876678999999999999999999985321   1  134789999999999 799999999999998877899999


Q ss_pred             EeCCCC--CCCCcccccCHHHHhhcCCCC-----CCCcEEEEECCh-hhHHhhh
Q 020296          254 VDNPTK--NWKGGVGYISKDTALKGLPSP-----SDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       254 ~~~~~~--~~~g~~g~i~~~~l~~~~~~~-----~~~~~v~vCGP~-~m~~~v~  299 (328)
                      ++++..  .|.+.++|++. .|.+.....     ..+..||||||+ +|++++.
T Consensus       450 fSRd~~~~~~~g~k~yVqd-~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~  502 (539)
T 2qtl_A          450 FSRDAPVGEEEAPAKYVQD-NIQLHGQQVARILLQENGHIYVCGDAKNMAKDVH  502 (539)
T ss_dssp             ESSSCC------CCCSHHH-HHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHH
T ss_pred             EccCCCccccCCCccchhH-HHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHH
Confidence            888654  36778899984 443322110     125789999997 9999997

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.94  E-value=8.8e-27  Score=234.65  Aligned_cols=165  Identities=16%  Similarity=0.190  Sum_probs=133.1

Q ss_pred             ccccccCCcCCCC-CCeEEEEEEEe----C-------CCccchhhhcCCCCCEEEEEc-eeeccccCCCCCceEEEEecC
Q 020296          131 VVRPYTPISDTEA-KGHFDLLIKVY----P-------EGKMSQHFASLKPGDVVEVKG-PIEKLRYSPNMKKHIGMIAGG  197 (328)
Q Consensus       131 ~~RpYTi~s~~~~-~~~l~l~Vk~~----~-------~G~~S~~L~~l~~Gd~v~v~G-P~G~~~~~~~~~~~ivlIAgG  197 (328)
                      ..|+|||+|+|.+ .+.++|+|+.+    +       .|.+|+||+++++||+|.|.+ |.|.|.++.+...+++|||||
T Consensus       430 ~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~~~~~piIlIagG  509 (688)
T 1tll_A          430 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG  509 (688)
T ss_dssp             CCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCSCTTSCEEEEEEG
T ss_pred             ceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCcCCCCCEEEEEcC
Confidence            5799999999875 68899999864    2       288999999999999999999 667999887667899999999


Q ss_pred             ccHHHHHHHHHHHHhC----CCCCCeEEEEEeeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccCHHH
Q 020296          198 TGITPMLQVIEAILKN----PDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDT  272 (328)
Q Consensus       198 tGItP~~~ll~~l~~~----~~~~~~i~L~~~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~~~~  272 (328)
                      ||||||++|++++...    .....+++|+|++|+.+ |++|.+||++|.+.+++++++++++++...|   +++++. .
T Consensus       510 tGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~---k~yVq~-~  585 (688)
T 1tll_A          510 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---KKYVQD-V  585 (688)
T ss_dssp             GGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---CCCHHH-H
T ss_pred             cchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCC---ccchhh-h
Confidence            9999999999998753    22347899999999998 7899999999998887789999988876543   355553 2


Q ss_pred             HhhcC-----CCC-CCCcEEEEECChhhHHhhh
Q 020296          273 ALKGL-----PSP-SDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       273 l~~~~-----~~~-~~~~~v~vCGP~~m~~~v~  299 (328)
                      |.+.+     ... ..+..||||||++|++++.
T Consensus       586 l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~  618 (688)
T 1tll_A          586 LQEQLAESVYRALKEQGGHIYVCGDVTMAADVL  618 (688)
T ss_dssp             HHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHH
T ss_pred             hHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence            22211     000 1358999999999999997

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.93  E-value=1.2e-25  Score=215.68  Aligned_cols=164  Identities=18%  Similarity=0.267  Sum_probs=131.1

Q ss_pred             ccccccccCCcCCCC-CCeEEEEEEEe---------CCCccchhhhcCCCCC------EEEEEceeeccccCCCCCceEE
Q 020296          129 KYVVRPYTPISDTEA-KGHFDLLIKVY---------PEGKMSQHFASLKPGD------VVEVKGPIEKLRYSPNMKKHIG  192 (328)
Q Consensus       129 ~~~~RpYTi~s~~~~-~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~GP~G~~~~~~~~~~~iv  192 (328)
                      ....|+|||+|++.. .+.++|+|+.+         +.|.+|+||+++.+|+      .|.+.+|.|.|.++.+...+++
T Consensus       231 ~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piI  310 (458)
T 3qfs_A          231 RLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVI  310 (458)
T ss_dssp             BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEE
T ss_pred             CCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceE
Confidence            347899999999864 68899988642         3589999999887765      6999999999999877678999


Q ss_pred             EEecCccHHHHHHHHHHHH---hCCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccccc
Q 020296          193 MIAGGTGITPMLQVIEAIL---KNPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYI  268 (328)
Q Consensus       193 lIAgGtGItP~~~ll~~l~---~~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i  268 (328)
                      |||||||||||++|+++..   +.+.+..+++|||++|+. +|++|.+||++|.+.++.++++.+++++..    .++++
T Consensus       311 mIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~----~k~yV  386 (458)
T 3qfs_A          311 MVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS----HKVYV  386 (458)
T ss_dssp             EECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----SCCCH
T ss_pred             EEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCC----CcccH
Confidence            9999999999999999853   232234689999999996 799999999999998766688888887642    45777


Q ss_pred             CHHHHh------hcCCCCCCCcEEEEECCh-hhHHhhh
Q 020296          269 SKDTAL------KGLPSPSDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       269 ~~~~l~------~~~~~~~~~~~v~vCGP~-~m~~~v~  299 (328)
                      +..+.+      +.+   .++..||||||+ .|+++++
T Consensus       387 qd~l~~~~~~l~~~l---~~~~~vYvCGp~~~M~~~V~  421 (458)
T 3qfs_A          387 QHLLKQDREHLWKLI---EGGAHIYVCGDARNMARDVQ  421 (458)
T ss_dssp             HHHHHHTHHHHHHHH---HTTCEEEEEEETTTHHHHHH
T ss_pred             hHHHHHhHHHHHHHh---cCCCEEEEECCCHHHHHHHH
Confidence            643322      112   135899999996 7999997

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.91  E-value=7.9e-26  Score=187.76  Aligned_cols=133  Identities=25%  Similarity=0.251  Sum_probs=97.0

Q ss_pred             CCCCCE-EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHh
Q 020296          166 LKPGDV-VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS  244 (328)
Q Consensus       166 l~~Gd~-v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~  244 (328)
                      |++||+ +.|+||+|+|...+ ..++++||||||||||+++|++++.+.+   .+++|+ ++|+.+|+++.+||++|+.+
T Consensus         1 L~~Gd~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r~~~d~~~~~el~~l~~~   75 (158)
T 3lrx_A            1 MKEGDSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR   75 (158)
T ss_dssp             -----------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EECBGGGCCSHHHHHHHSSE
T ss_pred             CcCCCEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhc
Confidence            579999 69999999965433 4689999999999999999999998653   489999 99999999999999998642


Q ss_pred             CCCeEEEEEEeCC----CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296          245 HPNLKVFYTVDNP----TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY  320 (328)
Q Consensus       245 ~~~~~v~~~~~~~----~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~  320 (328)
                         +.+.++++.+    +++|.+..|++++ .+++.++.. +...||+|||++||++++             +.|+++|+
T Consensus        76 ---~~~~~v~~~~~~~~~~~~~g~~G~v~~-~l~~~l~~~-~~~~vy~CGP~~mm~~v~-------------~~l~~~Gv  137 (158)
T 3lrx_A           76 ---HIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELLESE-DWDLVFMVGPVGDQKQVF-------------EVVKEYGV  137 (158)
T ss_dssp             ---EEECCBCCCTTSCHHHHHHHHHHHHHH-HHHHHHHHS-CCSEEEEESCHHHHHHHH-------------HHHGGGTC
T ss_pred             ---eEEEEeeccccccCCCCCCCCcccccH-HHHHhhccC-CCCEEEEECCHHHHHHHH-------------HHHHHcCC
Confidence               4443333332    2346778899985 555544433 346899999999999998             99999999


Q ss_pred             C
Q 020296          321 T  321 (328)
Q Consensus       321 ~  321 (328)
                      +
T Consensus       138 ~  138 (158)
T 3lrx_A          138 P  138 (158)
T ss_dssp             C
T ss_pred             C
Confidence            8

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.91  E-value=1.1e-24  Score=217.17  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=129.3

Q ss_pred             cccccccCCcCCCC-CCeEEEEEEE---------eCCCccchhhhcCCC-CC-----EEEEEceeeccccCCCCCceEEE
Q 020296          130 YVVRPYTPISDTEA-KGHFDLLIKV---------YPEGKMSQHFASLKP-GD-----VVEVKGPIEKLRYSPNMKKHIGM  193 (328)
Q Consensus       130 ~~~RpYTi~s~~~~-~~~l~l~Vk~---------~~~G~~S~~L~~l~~-Gd-----~v~v~GP~G~~~~~~~~~~~ivl  193 (328)
                      ...|+|||+|+|.. .+.++|+|+.         .+.|.+|+||+++.+ ||     +|.|.+|.|.|.++.+...+++|
T Consensus       392 l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~~~~~piim  471 (618)
T 3qe2_A          392 LQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIM  471 (618)
T ss_dssp             CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCSSTTSCEEE
T ss_pred             cccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCCCCCCCeEE
Confidence            36799999999864 5788888753         235999999998888 88     99999999999998776789999


Q ss_pred             EecCccHHHHHHHHHHHHh---CCCCCCeEEEEEeeCCC-chhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccccC
Q 020296          194 IAGGTGITPMLQVIEAILK---NPDDNTQVSLLYGNISP-DDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGYIS  269 (328)
Q Consensus       194 IAgGtGItP~~~ll~~l~~---~~~~~~~i~L~~~~r~~-~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~i~  269 (328)
                      ||||||||||+++++++..   .+.+..+++|+|++|+. +|++|.+||++|.+....++++.+.+++..    .+++++
T Consensus       472 Ig~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~----~k~yVq  547 (618)
T 3qe2_A          472 VGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS----HKVYVQ  547 (618)
T ss_dssp             ECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----SCCCHH
T ss_pred             EcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCC----CCCcHH
Confidence            9999999999999999763   32234789999999999 599999999999988554689998888653    356776


Q ss_pred             HHHHhh------cCCCCCCCcEEEEECCh-hhHHhhh
Q 020296          270 KDTALK------GLPSPSDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       270 ~~~l~~------~~~~~~~~~~v~vCGP~-~m~~~v~  299 (328)
                      ..+.+.      .+   .++..||||||+ .|+++++
T Consensus       548 d~l~~~~~~l~~~l---~~~a~vYvCGp~~~M~~~V~  581 (618)
T 3qe2_A          548 HLLKQDREHLWKLI---EGGAHIYVCGDARNMARDVQ  581 (618)
T ss_dssp             HHHHHTHHHHHHHH---HHTCEEEEEEETTTHHHHHH
T ss_pred             HHHHHhHHHHHHHH---hCCcEEEEECCchHHHHHHH
Confidence            433221      12   235799999996 9999997

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.91  E-value=1.1e-25  Score=226.54  Aligned_cols=164  Identities=21%  Similarity=0.272  Sum_probs=129.5

Q ss_pred             cccccccCCcCCCC-CCeEEEEEEE------------eCCCccchhhhcCCC------------CCEEEEEceeecc---
Q 020296          130 YVVRPYTPISDTEA-KGHFDLLIKV------------YPEGKMSQHFASLKP------------GDVVEVKGPIEKL---  181 (328)
Q Consensus       130 ~~~RpYTi~s~~~~-~~~l~l~Vk~------------~~~G~~S~~L~~l~~------------Gd~v~v~GP~G~~---  181 (328)
                      ...|+|||+|+|.. .+.++|+|+.            .+.|.+|+||+++++            |++|.|.||+|.|   
T Consensus       427 l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~  506 (682)
T 2bpo_A          427 MTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANY  506 (682)
T ss_dssp             CCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCGGGTTTTT
T ss_pred             cccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceeeccCcCcccCc
Confidence            37899999999874 5889998753            235899999998877            9999999999996   


Q ss_pred             -----------ccCCCCCceEEEEecCccHHHHHHHHHHHHhCC---------CCCCeEEEEEeeCCCchhhhHHHHHHH
Q 020296          182 -----------RYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP---------DDNTQVSLLYGNISPDDILLKQKLDIL  241 (328)
Q Consensus       182 -----------~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~---------~~~~~i~L~~~~r~~~d~~~~~el~~l  241 (328)
                                 .++.+...+++|||+|||||||+++++++....         ....+++|||++|+.+|++|.+||++|
T Consensus       507 ~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly~dEl~~~  586 (682)
T 2bpo_A          507 KLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEY  586 (682)
T ss_dssp             EECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCTTTTTHHHH
T ss_pred             eEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhhhHHHHHHH
Confidence                       334444689999999999999999999987432         124689999999999999999999999


Q ss_pred             HHh-CCCeEEEEEEeCCCCCCCCcccccCHHHHh------hcCCCCCCCcEEEEECC-hhhHHhhh
Q 020296          242 AAS-HPNLKVFYTVDNPTKNWKGGVGYISKDTAL------KGLPSPSDDALILVCGP-PGMMKHVS  299 (328)
Q Consensus       242 ~~~-~~~~~v~~~~~~~~~~~~g~~g~i~~~~l~------~~~~~~~~~~~v~vCGP-~~m~~~v~  299 (328)
                      +.+ ..++++++++++++.   +.++||+..+.+      +.+.   ++..|||||| ++|++++.
T Consensus       587 ~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l~---~~~~vYvCGpa~~M~~~V~  646 (682)
T 2bpo_A          587 AKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMIN---NGAFIYVCGDAKGMAKGVS  646 (682)
T ss_dssp             HHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHHT---TTCEEEEEECSTTHHHHHH
T ss_pred             HHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHHh---CCcEEEEeCCchHhHHHHH
Confidence            654 345899999888432   356788743332      1231   3589999999 79999997

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.89  E-value=1.8e-24  Score=176.28  Aligned_cols=128  Identities=23%  Similarity=0.218  Sum_probs=99.3

Q ss_pred             EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEE
Q 020296          172 VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVF  251 (328)
Q Consensus       172 v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~  251 (328)
                      +.|.||+|++...+ ..++++|||||+||||+++|++++.+.+   .+++++ ++|+.+|+++.+||++|..+   +.+.
T Consensus         3 ~~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R~~~~~~~~~el~~l~~~---~~~~   74 (142)
T 3lyu_A            3 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR---HIVE   74 (142)
T ss_dssp             ----CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEEEGGGCCSHHHHHTTSSE---EEEE
T ss_pred             eeeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhh---eEEE
Confidence            57899999976554 3689999999999999999999998763   589999 99999999999999987643   4444


Q ss_pred             EEEeCC----CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCC
Q 020296          252 YTVDNP----TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTE  322 (328)
Q Consensus       252 ~~~~~~----~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~  322 (328)
                      ++++.+    +++|.+.+|+++ +.+++.++.. +...||+|||++||+++.             +.+++.|++-
T Consensus        75 ~~~~~~~~~~~d~~~g~~G~v~-~~l~~~~~~~-~~~~vy~CGP~~Mm~av~-------------~~l~~~~~~~  134 (142)
T 3lyu_A           75 PVPLNPNQDFLANMKNVSQRLK-EKVRELLESE-DWDLVFMVGPVGDQKQVF-------------EVVKEYGVPM  134 (142)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHH-HHHHHHHHSS-CCSEEEEESCHHHHHHHH-------------HHHHHHTCCB
T ss_pred             EeecccccCCCCCCCCCccchh-HHHHHhcccC-CCCEEEEECCHHHHHHHH-------------HHHHHcCCch
Confidence            444432    234677889998 4566655443 346899999999999998             9999999975

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.89  E-value=7.7e-24  Score=179.66  Aligned_cols=137  Identities=13%  Similarity=0.180  Sum_probs=104.8

Q ss_pred             EEEEceeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCC------CCCCeEEEEEeeCCCchhh-hHHHHHHHHHh
Q 020296          172 VEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNP------DDNTQVSLLYGNISPDDIL-LKQKLDILAAS  244 (328)
Q Consensus       172 v~v~GP~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~------~~~~~i~L~~~~r~~~d~~-~~~el~~l~~~  244 (328)
                      |.|.||+|.|.++....++++||||||||||+++|+++++...      ....+|+|+|++|+.++++ +.+||++|.++
T Consensus         1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~   80 (186)
T 3a1f_A            1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ   80 (186)
T ss_dssp             CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred             CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence            3578999998765456789999999999999999999998641      2357899999999999998 99999999887


Q ss_pred             C-----C-CeEEEEEEeCCCCC---------------CCC-----cccccCHHH-HhhcCCC-CCCCcEEEEECChhhHH
Q 020296          245 H-----P-NLKVFYTVDNPTKN---------------WKG-----GVGYISKDT-ALKGLPS-PSDDALILVCGPPGMMK  296 (328)
Q Consensus       245 ~-----~-~~~v~~~~~~~~~~---------------~~g-----~~g~i~~~~-l~~~~~~-~~~~~~v~vCGP~~m~~  296 (328)
                      +     + +++++++++++...               +.+     ..||++.+. ++..... ...+..||+|||++|++
T Consensus        81 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~  160 (186)
T 3a1f_A           81 MQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAE  160 (186)
T ss_dssp             HHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHH
T ss_pred             HhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHH
Confidence            5     5 59999998875321               111     127777554 3332211 11357899999999999


Q ss_pred             hhhcccccCCCcchHHHHHhhcCCC
Q 020296          297 HVSGEKAKDYSQGELSGILKDLGYT  321 (328)
Q Consensus       297 ~v~g~~~~~~~qg~~~~~L~~~G~~  321 (328)
                      +++             ..|.++|+.
T Consensus       161 ~v~-------------~~l~~~g~~  172 (186)
T 3a1f_A          161 TLS-------------KQSISNSES  172 (186)
T ss_dssp             HHH-------------HHHHHTCCC
T ss_pred             HHH-------------HHHHHhhcc
Confidence            998             999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	5e-30
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	2e-23
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	4e-17
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	1e-16
d2cnda1	114	b.43.4.2 (A:11-124) Nitrate reductase core domain	2e-16
d1umka1	124	b.43.4.2 (A:30-153) cytochrome b5 reductase {Human	3e-16
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	4e-16
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	5e-16
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	7e-16
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	1e-14
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	6e-14
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	1e-13
d2piaa2	120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	7e-13
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	2e-12
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	2e-12
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	5e-12
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	6e-12
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	4e-11
d1cqxa2	111	b.43.4.2 (A:151-261) Flavohemoglobin, central doma	3e-10
d1tvca1	109	b.43.4.2 (A:2-110) Methane monooxygenase component	3e-09
d1gvha2	107	b.43.4.2 (A:147-253) Flavohemoglobin, central doma	6e-08
d1ja1a3	160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	1e-07
d1a8pa1	99	b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxi	2e-06
d2piaa1	103	b.43.4.2 (A:1-103) Phthalate dioxygenase reductase	2e-06
d1fdra1	99	b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxi	8e-06
d1qfja1	97	b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {E	8e-06
d1ep3b1	101	b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B,	3e-05
d1fnda1	136	b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox	1e-04
d1krha1	100	b.43.4.2 (A:106-205) Benzoate dioxygenase reductas	5e-04
d2bmwa1	133	b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi	0.003

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 5e-30
 Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 13/153 (8%)

Query: 177 PIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQ 236
           P +K        K +GMIAGGTGITPMLQVI AI+K+PDD+T   LL+ N +  DILL+ 
Sbjct: 7   PDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRP 66

Query: 237 KLDILAASHP-NLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295
           +L+ L   H    K++YT+D   + W  G G+++++     LP P ++ L+L+CGPP M+
Sbjct: 67  ELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMI 126

Query: 296 KHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
           ++                 L  +G+  +  + F
Sbjct: 127 QYACLP------------NLDHVGHPTERCFVF 147

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 91.9 bits (227), Expect = 2e-23
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 17/153 (11%)

Query: 181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILK-NPDDNTQVSLLYGNISPDDILLKQKLD 239
           +       + + MI GG+GITPM Q+I+A+L+  P+D+T++ L+Y N + DDILL+ +LD
Sbjct: 5   INGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELD 64

Query: 240 ILAASHPNLKVFY----TVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295
             AA +P+    +     V  P + WK  VG++++    + +P   DD L L CGPP M+
Sbjct: 65  RWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMI 124

Query: 296 KHVSGEKAKDYSQGELSGILKDLGYTEQMVYKF 328
           +              +S  L+ + Y     +  
Sbjct: 125 QFA------------ISPNLEKMKYDMANSFVV 145

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 75.4 bits (184), Expect = 4e-17
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 13/124 (10%)

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQ--------VSLLYGNISPDDILLKQ-KL 238
           + ++ M+AGGTGITPM   +  + K+ +              L++G  +  +IL K+   
Sbjct: 6   EANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELE 65

Query: 239 DILAASHPNLKVFYTVDNPTKNWKGGVGYIS----KDTALKGLPSPSDDALILVCGPPGM 294
           +I      N ++ Y +    KN +GG  YI     +          +      +CGPP M
Sbjct: 66  EIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPM 125

Query: 295 MKHV 298
            + +
Sbjct: 126 EEGI 129

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 73.8 bits (180), Expect = 1e-16
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 19/141 (13%)

Query: 185 PNMKKHIGMIAGGTGITPMLQVIEAILKNP----DDNTQVSLLYGNISPDDILLK-QKLD 239
            +    I M+  GTGI P    +  +          N    L  G  +   +L K +   
Sbjct: 5   KDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEK 64

Query: 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKG----LPSPSDDALILVCGPPGMM 295
           +   +  N ++ + V     N KG   YI    A            D+  + +CG  GM 
Sbjct: 65  MKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGME 124

Query: 296 KHV----------SGEKAKDY 306
           K +           G    +Y
Sbjct: 125 KGIDDIMVSLAAAEGIDWIEY 145

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} Length = 114

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 16/118 (13%)

Query: 78  WIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYT 136
            I  +L     +S +  LFRFS   P   LGL +   I   A          K  +R YT
Sbjct: 2   RIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCAT------IEGKLCMRAYT 55

Query: 137 PISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRYSP 185
           P S  +  GHFDLL+KVY +         G M+Q+  SL  G  ++VKGP+  + Y+ 
Sbjct: 56  PTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTG 113

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 3e-16
 Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 17/126 (13%)

Query: 69  PKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEG 126
           P I L +PD     +L D   +SH++  FRF+   P   LGL V   I   A        
Sbjct: 2   PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR------I 55

Query: 127 NTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGP 177
           +   VVRPYTPIS  + KG  DL+IKVY +         GKMSQ+  S++ GD +E +GP
Sbjct: 56  DGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGP 115

Query: 178 IEKLRY 183
              L Y
Sbjct: 116 SGLLVY 121

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 72.6 bits (177), Expect = 4e-16
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 8/119 (6%)

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKN----PDDNTQVSLLYGNISPDDILLKQKLDILAA 243
                MIA GTG+ P    +  +               L  G  + D +L  ++      
Sbjct: 3   NATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLK 62

Query: 244 SHPNLKVFYTV----DNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
            +P+   +              K  V    ++ + +        A I  CG  GMM  +
Sbjct: 63  QYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGI 121

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 72.3 bits (176), Expect = 5e-16
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 26/146 (17%)

Query: 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHP-- 246
           KH+ M++ GTG+ P + +I+          +V L++G    +++  +Q +          
Sbjct: 8   KHLYMLSTGTGLAPFMSLIQDPEVYERF-EKVVLIHGVRQVNELAYQQFITEHLPQSEYF 66

Query: 247 ------NLKVFYTVDNPTKNWKGGVGYISKD----TALKGLPSPSDDALILVCGPPGMMK 296
                  L  + TV   + + +G +  + +       +   P    D   ++CG P M+ 
Sbjct: 67  GEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSPSMLD 126

Query: 297 HVSGEKAKDYSQGELSGILKDLGYTE 322
                            +L   G   
Sbjct: 127 ES-------------CEVLDGFGLKI 139

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 71.5 bits (174), Expect = 7e-16
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 18/142 (12%)

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
           K  I +I+GG G+TPM+ +++  L+ P    QV  ++G  +     ++ +L   A ++ N
Sbjct: 5   KTPIVLISGGVGLTPMVSMLKVALQAPPR--QVVFVHGARNSAVHAMRDRLREAAKTYEN 62

Query: 248 LKVFYTVDNPTKNWKGGVGYIS---KDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAK 304
           L +F   D P      G  Y      D           DA   +CGP   M+        
Sbjct: 63  LDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQ------ 116

Query: 305 DYSQGELSGILKDLGYTEQMVY 326
                     LK+LG  E  ++
Sbjct: 117 -------HDALKNLGIHEARIH 131

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL 248
             + +I+ G G TPML +++ + K      QV+  +   + D      ++  L  S P  
Sbjct: 7   TPVTLISAGVGQTPMLAMLDTLAKA-GHTAQVNWFHAAENGDVHAFADEVKELGQSLPRF 65

Query: 249 KVFYTVDNPTKNWKGGVGYISK---DTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKD 305
                   P++  +    + S+   D +              +CGP G M+         
Sbjct: 66  TAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFT------- 118

Query: 306 YSQGELSGILKDLGYTEQMVY 326
                 +  L DLG  ++ ++
Sbjct: 119 ------AKQLVDLGVKQENIH 133

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 66.2 bits (160), Expect = 6e-14
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL 248
           + + M+A GT I P L ++       D    + L++      D+     +  L   +   
Sbjct: 7   ETLWMLATGTAIGPYLSILRLGKDL-DRFKNLVLVHAARYAADLSYLPLMQELEKRYEGK 65

Query: 249 KVFYTVDNPTKNWKGGVGYISKDT------ALKGLPSPSDDALILVCGPPGMMKHV 298
               TV +         G I          +  GLP   + + +++CG P M++  
Sbjct: 66  LRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDT 121

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
           ++ + +IAGGTG +    ++   L    +       +G      +    +L+ L+  HP 
Sbjct: 5   ERPMILIAGGTGFSYARSILLTALARNPNRDITI-YWGGREEQHLYDLCELEALSLKHPG 63

Query: 248 LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           L+V   V+ P   W+G  G +    A+        +  I + G   M K  
Sbjct: 64  LQVVPVVEQPEAGWRGRTGTVLT--AVLQDHGTLAEHDIYIAGRFEMAKIA 112

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 62.6 bits (151), Expect = 7e-13
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 189 KHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNL 248
           K   ++AGG GITPML +   +           L Y    P+      +L        ++
Sbjct: 9   KSFILVAGGIGITPMLSMARQLRAEGLR--SFRLYYLTRDPEGTAFFDELTSDEW-RSDV 65

Query: 249 KVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHV 298
           K+ +   +PTK +                        +  CGP  +M  V
Sbjct: 66  KIHHDHGDPTKAFDF----------WSVFEKSKPAQHVYCCGPQALMDTV 105

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 1/111 (0%)

Query: 185 PNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAAS 244
            N +  + MI  GTGI P    ++    +                +D L + +       
Sbjct: 3   ANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKE 62

Query: 245 HPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295
               ++     +  +  K  V    ++   +     +D A I VCG    M
Sbjct: 63  GVLTRIDLAW-SRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRM 112

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
           K+ + M+AGGTGI P L +++ + +   ++  V L++G     D++  ++LD L    P 
Sbjct: 5   KRPVLMLAGGTGIAPFLSMLQVLEQKGSEH-PVRLVFGVTQDCDLVALEQLDALQQKLPW 63

Query: 248 LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS 307
            +    V +     +           ++       +  + +CGP  M++ V         
Sbjct: 64  FEYRTVVAHAESQHE---RKGYVTGHIEYDWLNGGEVDVYLCGPVPMVEAV--------- 111

Query: 308 QGELSGILKDLGYTEQMVY 326
                  L   G       
Sbjct: 112 ----RSWLDTQGIQPANFL 126

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 60.9 bits (147), Expect = 5e-12
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN 247
              I +I GG G+ P+ ++ + + K      Q+++L G  S +  +L+ +   L     N
Sbjct: 8   TDKILIIGGGIGVPPLYELAKQLEKT---GCQMTILLGFASENVKILENEFSNLK----N 60

Query: 248 LKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYS 307
           + +    D+ +   KG VG +  +          +   +  CG P M+K V+ +K     
Sbjct: 61  VTLKIATDDGSYGTKGHVGMLMNE-------IDFEVDALYTCGAPAMLKAVA-KKYDQLE 112

Query: 308 QGELS 312
           +  +S
Sbjct: 113 RLYIS 117

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.9 bits (147), Expect = 6e-12
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 7/121 (5%)

Query: 185 PNMKKHIGMIAGGTGITPMLQVIEAIL-----KNPDDNTQVSLLYGNISPDDILLKQKLD 239
            N +    ++  GTGI P     +        K  +    V +     S  D + +++  
Sbjct: 6   RNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETL 65

Query: 240 ILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPS--PSDDALILVCGPPGMMKH 297
                    +++          K  V  + ++   + +          I VCG   M   
Sbjct: 66  QAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAAD 125

Query: 298 V 298
           V
Sbjct: 126 V 126

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 58.1 bits (139), Expect = 4e-11
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 193 MIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFY 252
            +AGGTG+ P++ ++  + +      +  + +G  +  ++    +L  L  S  NL V  
Sbjct: 13  FVAGGTGLAPVVSMVRQMQEW-TAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVKA 71

Query: 253 TVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELS 312
            V +P+ +W+G  G    D   + L S   +  I +CGPPGM+                 
Sbjct: 72  CVWHPSGDWEGEQGSPI-DALREDLESSDANPDIYLCGPPGMIDAA-------------C 117

Query: 313 GILKDLGYTEQMVY 326
            +++  G   + V+
Sbjct: 118 ELVRSRGIPGEQVF 131

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 111

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 54.8 bits (131), Expect = 3e-10
 Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 10/106 (9%)

Query: 78  WIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYT 136
           W  F +++    S     F     D    +  +          +           +R Y+
Sbjct: 4   WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDV----PALGLQQIRQYS 59

Query: 137 PISDTEAKGHFDLLIKV----YPEGKMSQH-FASLKPGDVVEVKGP 177
                  + +   + +      P G +S      +  GD V++  P
Sbjct: 60  LSDMPNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAP 105

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 109

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 70  KIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQ--DAEGN 127
           +I+         ++     VS N+  F     P       V      +   GQ  D    
Sbjct: 2   RISFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGV------KFEPGQFMDLTIP 55

Query: 128 TKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGP 177
              V R Y+P +    +G  + LI+V PEG+ S +     + G V+ VKGP
Sbjct: 56  GTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGP 106

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} Length = 107

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

 Score = 48.2 bits (114), Expect = 6e-08
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 7/102 (6%)

Query: 78  WIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYT 136
              F++      S     F     D  A         +               +      
Sbjct: 6   TRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGF-----PHQEIRQY 60

Query: 137 PISDTEAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGP 177
            ++       + + +K    G++S         GDVV++  P
Sbjct: 61  SLTRKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAP 102

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 182 RYSPNMKKHIGMIAGGTGITP---MLQVIEAILKNPDDNTQVSLLYGNIS-PDDILLKQK 237
           R        + M+  GTGI P    +Q    + +   +  +  L YG     +D L +++
Sbjct: 1   RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREE 60

Query: 238 LDILAASHPNLKVFYTVDNPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMM 295
           L          ++         +       + +D            A I V G    M
Sbjct: 61  LARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNM 118

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]} Length = 99

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 81  FKLQDTARVSHNSH-LFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS 139
             ++    V H +  LF F    +    L   +       L    E + + ++R Y+  S
Sbjct: 3   LNVERVLSVHHWNDTLFSFKTTRNP--SLRFENGQFVMIGL----EVDGRPLMRAYSIAS 56

Query: 140 DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEV-KGP 177
                 H +        G ++     LK GD + V + P
Sbjct: 57  PNYE-EHLEFFSIKVQNGPLTSRLQHLKEGDELMVSRKP 94

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 103

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 76  DKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRP 134
           D ++  K+    +++ +   F  +    +     +  + +    P G           R 
Sbjct: 6   DGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---------SRRT 56

Query: 135 YTPISDTEAKGHFDLLIKVYPEGK-MSQH-FASLKPGDVVEVKGP 177
           Y+  +D++ +  + + +K    G+  S         GD VEV  P
Sbjct: 57  YSLCNDSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLP 101

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} Length = 99

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (97), Expect = 8e-06
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 18/105 (17%)

Query: 77  KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQ----DAEGNTKYVV 132
            W+  K+  T   +    LF  +                     GQ      E + + V 
Sbjct: 2   DWVTGKV--TKVQNWTDALFSLTVHAPV-----------LPFTAGQFTKLGLEIDGERVQ 48

Query: 133 RPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGP 177
           R Y+ ++  +     +  +   P+GK+S   A+LKPGD V+V   
Sbjct: 49  RAYSYVNSPD-NPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSE 92

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (97), Expect = 8e-06
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 14/97 (14%)

Query: 86  TARVSHNSHL----FRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDT 141
           + +V+    +    +R    P A         ++                 RP++  S  
Sbjct: 4   SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDK---------RPFSMASTP 54

Query: 142 EAKGHFDLLIKVYPEGKMSQH-FASLKPGDVVEVKGP 177
           + KG  +L I        ++     +     + V  P
Sbjct: 55  DEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIP 91

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 101

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 17/104 (16%)

Query: 82  KLQDTARVSHNSHL----FRFSFDPSAKLGLDVASCILTRAPLGQDA----EGNTKYVVR 133
           +LQ+   V     +    F               + +      GQ            + R
Sbjct: 2   QLQEMMTVVSQREVAYNIFEMVLK---------GTLVDEMDLPGQFLHLAVPNGAMLLRR 52

Query: 134 PYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGP 177
           P +  S  +      +L ++  E   +   + L+ G  V+V GP
Sbjct: 53  PISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGP 96

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 15/103 (14%)

Query: 91  HNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPY----TPISDTEAKGH 146
                +   F    ++       +        + +    + +R Y    + + D      
Sbjct: 35  APGETWHMVFSHEGEIPYREGQSVGVIPDG--EDKNGKPHKLRLYSIASSALGDFGDAKS 92

Query: 147 FDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEK 180
             L +K            +G  S     LKPG  V++ GP+ K
Sbjct: 93  VSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK 135

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 100

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 11/98 (11%)

Query: 82  KLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQ--DAEGNTKYVVRPYTPIS 139
            L     +S ++  F    D                   GQ  +         R Y+  S
Sbjct: 7   TLARVENLSDSTITFDIQLDDGQPD---------IHFLAGQYVNVTLPGTTETRSYSFSS 57

Query: 140 DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGP 177
               +    ++  V             K GD +   GP
Sbjct: 58  QPGNRLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGP 95

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 14/66 (21%)

Query: 126 GNTKYVVRPYTPISDTEAKGHFDLLIKVY--------------PEGKMSQHFASLKPGDV 171
                 +R Y+  S        D  I +                 G  S +   ++PG  
Sbjct: 62  NGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121

Query: 172 VEVKGP 177
           V++ GP
Sbjct: 122 VKITGP 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.97
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.96
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.94
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.93
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.93
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.9
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.9
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.86
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.85
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.84
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.84
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.84
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.83
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.83
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	99.82
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.82
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	99.82
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.8
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	99.8
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.79
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.78
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.77
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.77
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.77
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.77
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	99.77
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.75
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.7
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.65
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.59
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.43
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	96.12
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	95.51
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	90.31

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=211.80  Aligned_cols=139  Identities=40%  Similarity=0.745  Sum_probs=122.8

Q ss_pred             eeeccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEe
Q 020296          177 PIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVD  255 (328)
Q Consensus       177 P~G~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~  255 (328)
                      |.+++.......++++|||||||||||++|++++++++.+.++++|+|++|+.+|+++.+||++|+++++. +++++.++
T Consensus         7 p~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~~~~~i~L~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~   86 (147)
T d1umka2           7 PDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD   86 (147)
T ss_dssp             SSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEES
T ss_pred             CCCCCCcccccCCeEEEEECCeecchHHHHHHHHHhcCCCCceEEEEEEeCccccchhHHHHhhhhhhcCcceEEEEEec
Confidence            44443333345689999999999999999999999877777899999999999999999999999998865 99999999


Q ss_pred             CCCCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHh-hhcccccCCCcchHHHHHhhcCCCCCCeEeC
Q 020296          256 NPTKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKH-VSGEKAKDYSQGELSGILKDLGYTEQMVYKF  328 (328)
Q Consensus       256 ~~~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~-v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~f  328 (328)
                      ++...|.+..|+++++++++.++....+..+|+|||++|++. ++             ++|+++|++++|||+|
T Consensus        87 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGP~~m~~~~~~-------------~~L~~~G~~~e~i~~F  147 (147)
T d1umka2          87 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACL-------------PNLDHVGHPTERCFVF  147 (147)
T ss_dssp             SCCSSCSSEESSCCHHHHHHHSCCGGGCCEEEEESCHHHHHHTTH-------------HHHHHHTCCGGGEEEC
T ss_pred             ccccCcccceeehHHHHHHHhcCCCcCCcEEEEeCCHHHHHHHHH-------------HHHHHcCCCHHHEEEC
Confidence            999999999999999999988877666789999999999985 55             8999999999999998

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.96  E-value=6.1e-29  Score=200.83  Aligned_cols=132  Identities=21%  Similarity=0.388  Sum_probs=117.1

Q ss_pred             cccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCC
Q 020296          181 LRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKN  260 (328)
Q Consensus       181 ~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~  260 (328)
                      |.++++..++++||||||||||+++|++++.+.. ...+|+|+|++|+.+|+++.+||++|++++++++++.+++++..+
T Consensus         1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~~~~~~   79 (141)
T d1tvca2           1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGVNTEPELFYIDELKSLERSMRNLTVKACVWHPSGD   79 (141)
T ss_dssp             CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEECSSSTTCCCHHHHHHHHHHSSSCEEEECCSSCSSC
T ss_pred             CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcC-CCCceEEEeecccchhhhhHHHHHHHHhhccccccceeecccccC
Confidence            5678888899999999999999999999998774 457899999999999999999999999999999999999999999


Q ss_pred             CCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          261 WKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       261 ~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      |.+..|++++.+.+..... ..+..||+|||++|+++++             +.|.++|+++++||.
T Consensus        80 ~~~~~g~~~~~~~~~~~~~-~~~~~vyiCGp~~m~~~v~-------------~~l~~~Gv~~~~i~~  132 (141)
T d1tvca2          80 WEGEQGSPIDALREDLESS-DANPDIYLCGPPGMIDAAC-------------ELVRSRGIPGEQVFF  132 (141)
T ss_dssp             CSSSSSSSSHHHHHHHHHS-SSSSEEEEESSHHHHHHHH-------------HHHHHHCCCCSEEEE
T ss_pred             cCCccchhHHHHHHhcccc-cccceeeccCCHHHHHHHH-------------HHHHHcCCCHHHEEE
Confidence            9999999996655543332 3457899999999999998             999999999999985

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.94  E-value=8.7e-27  Score=186.12  Aligned_cols=123  Identities=24%  Similarity=0.414  Sum_probs=106.3

Q ss_pred             CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccc
Q 020296          187 MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVG  266 (328)
Q Consensus       187 ~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g  266 (328)
                      ..+++|||||||||||+++|++++...+. ..+|+|+|++|+.+|+++.+||++|++++|+|+++.+++++. .|.+..|
T Consensus         4 ~~rplv~IAgG~GItP~~s~l~~~~~~~~-~~~i~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~-~~~~~~g   81 (133)
T d1krha2           4 VKRPVLMLAGGTGIAPFLSMLQVLEQKGS-EHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAE-SQHERKG   81 (133)
T ss_dssp             CSSCEEEEEEGGGHHHHHHHHHHHHHHCC-SSCEEEEEEESSGGGCCCHHHHHHHHHHCTTEEEEEEETTCC-SSSSEES
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHcCC-CCceEEEEeecchhHHHHHHHHHHHHHhCCceeeeeeeeccc-ccccccc
Confidence            45789999999999999999999987643 478999999999999999999999999999999988887754 4667888


Q ss_pred             ccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeE
Q 020296          267 YISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVY  326 (328)
Q Consensus       267 ~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~  326 (328)
                      +++..+.++.+. . .+..||+|||++|+++++             +.|.++|+++++||
T Consensus        82 ~v~~~i~~~~~~-~-~~~~vyiCGp~~m~~~v~-------------~~L~~~Gv~~~~i~  126 (133)
T d1krha2          82 YVTGHIEYDWLN-G-GEVDVYLCGPVPMVEAVR-------------SWLDTQGIQPANFL  126 (133)
T ss_dssp             CSGGGCCGGGGG-G-GCSEEEEEEEHHHHHHHH-------------HHHHHHTCCCSEEE
T ss_pred             hhHHHHHHhhcc-c-ccceEEEECCHHHHHHHH-------------HHHHHcCCCHHHEE
Confidence            988655444433 2 357899999999999998             99999999999998

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.93  E-value=6e-26  Score=183.47  Aligned_cols=136  Identities=37%  Similarity=0.716  Sum_probs=114.3

Q ss_pred             eccccCC--CCCceEEEEecCccHHHHHHHHHHHHhCC-CCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEE
Q 020296          179 EKLRYSP--NMKKHIGMIAGGTGITPMLQVIEAILKNP-DDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTV  254 (328)
Q Consensus       179 G~~~~~~--~~~~~ivlIAgGtGItP~~~ll~~l~~~~-~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~  254 (328)
                      |+|.+++  ...++++||||||||||+++|++++++.. .+.++++|+|++|+.+++++.+++.++...+++ +.+++..
T Consensus         1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (146)
T d2cnda2           1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVI   80 (146)
T ss_dssp             SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred             CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCCccCceEEEEEeecccccchhHHHHhhHHHhCCCceeEEEee
Confidence            5677753  34579999999999999999999988653 456799999999999999999999999999988 5554444


Q ss_pred             eCC---CCCCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHh-hhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          255 DNP---TKNWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKH-VSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       255 ~~~---~~~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~-v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      ...   ...|.+..|+++.+.+++.++...++..||+|||++|++. ++             +.|+++|+++++||.
T Consensus        81 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~~m~~~av~-------------~~L~~~G~~~~~i~~  144 (146)
T d2cnda2          81 DQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQFAIS-------------PNLEKMKYDMANSFV  144 (146)
T ss_dssp             SCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHHHHTTTH-------------HHHHTTTCCHHHHEE
T ss_pred             ccccCcccccccccCccchHHHHHhcccCCCCcEEEEECCHHHHHHHHH-------------HHHHHcCCCHHHEEE
Confidence            332   3457888999999999988887767789999999999995 66             899999999999985

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.3e-25  Score=177.19  Aligned_cols=126  Identities=20%  Similarity=0.373  Sum_probs=110.4

Q ss_pred             CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcc
Q 020296          186 NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGV  265 (328)
Q Consensus       186 ~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~  265 (328)
                      +..+++|||||||||||+++|+++++..+ ...+|+|+|++|+.+++++.+++.+|..+++++.+++..+.+...|.+..
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRT   81 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTTHHHHHHHHHHCTTEEEEEEESSCCTTCCSEE
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHcc-cccceeEEEecccHhHHHHHHHHHHHHHhcCccceeeeecccCccccccc
Confidence            55689999999999999999999998764 34789999999999999999999999999999988888888888899999


Q ss_pred             cccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHH-hhcCCCCCCeEe
Q 020296          266 GYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGIL-KDLGYTEQMVYK  327 (328)
Q Consensus       266 g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L-~~~G~~~~~I~~  327 (328)
                      |+++.++++.. .++ ++..+|+|||++|++++.             +.| +++|+++++||.
T Consensus        82 g~~~~~~~~~~-~~~-~~~~~yvCGp~~m~~~~~-------------~~L~~~~G~~~~~i~~  129 (135)
T d1qfja2          82 GTVLTAVLQDH-GTL-AEHDIYIAGRFEMAKIAR-------------DLFCSERNAREDRLFG  129 (135)
T ss_dssp             SCHHHHHHHHC-SCC-TTCEEEEESCHHHHHHHH-------------HHHHHHSCCCGGGEEC
T ss_pred             CchHHHHHHhc-cCc-ccCceEeeCCHHHHHHHH-------------HHHHHHcCCCHHHEEE
Confidence            99997766654 443 357899999999999987             665 789999999984

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.90  E-value=1.5e-23  Score=168.71  Aligned_cols=125  Identities=27%  Similarity=0.409  Sum_probs=102.6

Q ss_pred             CCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCC---
Q 020296          186 NMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWK---  262 (328)
Q Consensus       186 ~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~---  262 (328)
                      +..++++||||||||||+++|+++++.++  .++++|+|++|+++++++.+++.++.+++++++++.+++++...+.   
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~--~~~i~li~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP--PRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGR   80 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS--CCCEEEEEEESCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTT
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC--CCcEEEEeeccChhhhhhHHHHHHHHHhCCCeEEEEEEcccCCcccccc
Confidence            44678999999999999999999988764  4789999999999999999999999999999999999988654322   


Q ss_pred             --CcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          263 --GGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       263 --g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                        ...++...+.+.+....  .+..||+|||++|+++++             +.|.++|+++++||.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~--~~~~vyiCGp~~m~~~v~-------------~~L~~~G~~~~~i~~  132 (142)
T d1cqxa3          81 DYDYPGLVDVKQIEKSILL--PDADYYICGPIPFMRMQH-------------DALKNLGIHEARIHY  132 (142)
T ss_dssp             TBSEESSCCGGGSHHHHCC--TTCEEEEESSHHHHHHHH-------------HHHHHTTCCGGGEEE
T ss_pred             cccchhhhHHHHHHhhccc--CCceEEEECChhHHHHHH-------------HHHHHcCCCHHHEEE
Confidence              22334444444433322  357899999999999998             999999999999984

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.1e-23  Score=169.76  Aligned_cols=124  Identities=20%  Similarity=0.340  Sum_probs=103.5

Q ss_pred             CceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCC-----CC
Q 020296          188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKN-----WK  262 (328)
Q Consensus       188 ~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~-----~~  262 (328)
                      .++++||||||||||+++|++++++.+. ..+++|+|++|+.+|+++.+++.++.+++|+++++++++++...     +.
T Consensus         6 d~plv~IagGtGiaP~~s~l~~l~~~~~-~~~i~l~~~~r~~~d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
T d1gvha3           6 DTPVTLISAGVGQTPMLAMLDTLAKAGH-TAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQF   84 (143)
T ss_dssp             TCCEEEEEEGGGGHHHHHHHHHHHHHTC-CSCEEEEEEESCTTTCCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCC
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHcCC-CceEEEEeecCCHHHHHHHHHHHHHHHhCCceEEEEEEeccCcccccccce
Confidence            4789999999999999999999987754 47899999999999999999999999999999999998876532     23


Q ss_pred             CcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          263 GGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       263 g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                      ...++++.+.+......  ++..+|+|||++|++++.             ..|+++|+++++||.
T Consensus        85 ~~~~~~~~~~l~~~~~~--~~~~~~iCGp~~m~~~v~-------------~~L~~~G~~~~~i~~  134 (143)
T d1gvha3          85 DSEGLMDLSKLEGAFSD--PTMQFYLCGPVGFMQFTA-------------KQLVDLGVKQENIHY  134 (143)
T ss_dssp             SEESSCCGGGSSSCCCC--TTCEEEEESCHHHHHHHH-------------HHHHHTTCCGGGEEE
T ss_pred             eeeccccHHHHHhcccc--cCcEEEEeCcHHHHHHHH-------------HHHHHcCCCHHHEEE
Confidence            34456665444433322  368999999999999998             999999999999984

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=9.6e-22  Score=159.12  Aligned_cols=122  Identities=18%  Similarity=0.209  Sum_probs=92.8

Q ss_pred             CceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCcccc
Q 020296          188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVGY  267 (328)
Q Consensus       188 ~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g~  267 (328)
                      .++++||||||||||+++|++++.... ...+|.|+|++|+.+|++|.++++++.++++++.++.++......+.+..++
T Consensus         6 ~k~lvlIa~GtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (148)
T d1fdra2           6 CETLWMLATGTAIGPYLSILRLGKDLD-RFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLTGR   84 (148)
T ss_dssp             CSEEEEEEEGGGGHHHHHHHHHCCSCT-TCSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSCCTTEEESC
T ss_pred             CCEEEEEEcCeEHHHHHHHHHHHHHhC-CCCcEEEEEecCcHHHHHHHHHhhhHHHhccccccccccccCcccccccccc
Confidence            479999999999999999999987663 5689999999999999999999999999999966655555555555544454


Q ss_pred             cCHHH----HhhcC--CCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhh-cCCCCC
Q 020296          268 ISKDT----ALKGL--PSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKD-LGYTEQ  323 (328)
Q Consensus       268 i~~~~----l~~~~--~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~-~G~~~~  323 (328)
                      ++...    +.+.+  ....++..||+|||++|++++.             +.|.+ .|+++.
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~v~-------------~~L~e~~g~~e~  134 (148)
T d1fdra2          85 IPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQ-------------QLLKETRQMTKH  134 (148)
T ss_dssp             HHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHH-------------HHHHHHHCCCBC
T ss_pred             ccchHHHHHHHHhhccccccccceEEEECCHHHHHHHH-------------HHHHHhcCCCcc
Confidence            43222    12111  1122457899999999999998             77864 677764

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.85  E-value=1.1e-21  Score=160.72  Aligned_cols=115  Identities=23%  Similarity=0.389  Sum_probs=92.7

Q ss_pred             cCCCCCceEEEEecCccHHHHHHHHHHHHhCCC----CCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCC
Q 020296          183 YSPNMKKHIGMIAGGTGITPMLQVIEAILKNPD----DNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNP  257 (328)
Q Consensus       183 ~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~----~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~  257 (328)
                      ++.+..++++||||||||||+++|+++++....    ...+++|+|++|+.+|++|.+|+.++.+++++ +.+.++.+++
T Consensus         3 LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~s~~   82 (160)
T d1fnda2           3 MPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSRE   82 (160)
T ss_dssp             CBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTT
T ss_pred             CCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHHHHHHHHHHHHHHHhcCCceeEEEEEccc
Confidence            556677899999999999999999999975332    34689999999999999999999999999888 7888888887


Q ss_pred             CCCCCCcccccCHHHHh------hcCCCCCCCcEEEEECChhhHHhhh
Q 020296          258 TKNWKGGVGYISKDTAL------KGLPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       258 ~~~~~g~~g~i~~~~l~------~~~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      ...+.+..++++.....      +.+  ..++..||+|||++|+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vyiCGp~~m~~~v~  128 (160)
T d1fnda2          83 QTNEKGEKMYIQTRMAQYAVELWEML--KKDNTYVYMCGLKGMEKGID  128 (160)
T ss_dssp             CBCTTCCBCCHHHHHHTTHHHHHHHH--TSTTEEEEEEECHHHHHHHH
T ss_pred             hhccCCCcceehhhHHHHHHHHHHhh--ccCCCEEEEeCCHHHHHHHH
Confidence            77777776666543322      111  12468999999999999997

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.84  E-value=1.7e-21  Score=152.04  Aligned_cols=119  Identities=19%  Similarity=0.296  Sum_probs=88.8

Q ss_pred             ccccCCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCC
Q 020296          180 KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTK  259 (328)
Q Consensus       180 ~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~  259 (328)
                      +|.++. ..+++||||||||||||++|++++.++.  ..+++++|++|+.+++++.++++++... +++.++...+.+. 
T Consensus         1 dF~l~~-~~~~~v~IagGtGiaP~~s~~~~l~~~~--~~~~~l~~~~r~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~-   75 (120)
T d2piaa2           1 EFPLDK-RAKSFILVAGGIGITPMLSMARQLRAEG--LRSFRLYYLTRDPEGTAFFDELTSDEWR-SDVKIHHDHGDPT-   75 (120)
T ss_dssp             CSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC--SSEEEEEEEESCGGGCTTHHHHHSTTTT-TTEEEEECTTCTT-
T ss_pred             CCCCCC-CCCCEEEEEecccHHHHHHHHHHHHHhc--CCCeEEEEeeCCHHHhhhhHHHHHHhhC-CCeEEeeecCCCc-
Confidence            366765 5689999999999999999999998764  3689999999999999999999998754 4565544322221 


Q ss_pred             CCCCcccccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCeEe
Q 020296          260 NWKGGVGYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMVYK  327 (328)
Q Consensus       260 ~~~g~~g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I~~  327 (328)
                            ++.....+   +....++..+|+|||++|+++++             +.|+  |++.++||.
T Consensus        76 ------~~~~~~~~---~~~~~~~~~~y~CGp~~mi~~v~-------------~~~~--~~~~~~ih~  119 (120)
T d2piaa2          76 ------KAFDFWSV---FEKSKPAQHVYCCGPQALMDTVR-------------DMTG--HWPSGTVHF  119 (120)
T ss_dssp             ------SCCCHHHH---HSSCCTTEEEEEESCHHHHHHHH-------------HHTT--TSCTTCEEE
T ss_pred             ------ccccHHHH---hccCCCcCEEEEeCCHHHHHHHH-------------HHHc--CCCHHHeec
Confidence                  22222222   12223468999999999999997             6664  889999984

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.84  E-value=9.5e-21  Score=146.55  Aligned_cols=101  Identities=39%  Similarity=0.655  Sum_probs=92.3

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe--
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--  154 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~--  154 (328)
                      +.+++|++++.+++|++.|+|++|+ .....+.+|||+.++.+..      +....|+||+++.+.+.+.++|.||.+  
T Consensus         2 k~~~klv~~~~it~d~~~~~f~~p~~~~~~~~~~Gq~v~v~~~~~------~~~~~R~Ys~~s~~~~~~~~~~~ik~~~~   75 (114)
T d2cnda1           2 RIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIE------GKLCMRAYTPTSMVDEIGHFDLLVKVYFK   75 (114)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEET------TEEEEEEECCCSCTTCCSEEEEEEECCCS
T ss_pred             cEEEEEEEEEEcCCCeEEEEEECCCcccccCccceEEEEEEeecc------cceEEeeeccCCCCCCCCEEEEEEEeccC
Confidence            4689999999999999999999987 5668899999999999876      667899999999999999999999976  


Q ss_pred             -------CCCccchhhhcCCCCCEEEEEceeeccccC
Q 020296          155 -------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS  184 (328)
Q Consensus       155 -------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~  184 (328)
                             ++|.+|.||++|++||+|.|+||+|+|.|.
T Consensus        76 ~~~~~~~~gG~~s~~l~~l~~Gd~v~i~gP~G~F~y~  112 (114)
T d2cnda1          76 NEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYT  112 (114)
T ss_dssp             SCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECC
T ss_pred             CCccccccCchhHHHHhhCCCCCEEEEECCceeeEEC
Confidence                   458999999999999999999999999885

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.1e-21  Score=148.90  Aligned_cols=107  Identities=42%  Similarity=0.664  Sum_probs=95.5

Q ss_pred             cCCCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEE
Q 020296           72 ALNPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLL  150 (328)
Q Consensus        72 ~l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~  150 (328)
                      ..+|..|.+++|++++.+++|++.|+|++++ .....+.+|||+.++.+..      +....|+||++|.+.+.+.++|.
T Consensus         6 ~~~P~~~~~~~v~~~~~it~d~~~f~f~~p~~~~~~~~~~Gq~v~v~~~~~------~~~~~R~Ys~~s~~~~~g~~~~~   79 (124)
T d1umka1           6 LESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARID------GNLVVRPYTPISSDDDKGFVDLV   79 (124)
T ss_dssp             CCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEET------TEEEEEEECCSSCTTCCSEEEEE
T ss_pred             ccCCCcCEEEEEEEEEEeCCCeEEEEEEcCCcccccccceeeEEEEEeccc------ceeEEEeeccCCcccCCceEEEE
Confidence            4478889999999999999999999999987 5567899999999998876      66789999999999999999999


Q ss_pred             EEEe---------CCCccchhhhcCCCCCEEEEEceeeccccC
Q 020296          151 IKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS  184 (328)
Q Consensus       151 Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~  184 (328)
                      ||.+         ++|.+|.+|++|++||+|+|+||+|+|.|.
T Consensus        80 vk~~~~~~~~~~~~Gg~~s~~l~~l~~GD~v~v~gP~G~F~y~  122 (124)
T d1umka1          80 IKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQ  122 (124)
T ss_dssp             EECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEE
T ss_pred             EEecccccccccCCCcchHHHHhcCCCCCEEEEECCeeeeEEC
Confidence            9953         456788888999999999999999999874

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.83  E-value=4.7e-21  Score=157.01  Aligned_cols=127  Identities=25%  Similarity=0.450  Sum_probs=99.2

Q ss_pred             CCCCCceEEEEecCccHHHHHHHHHHHHhCC--------CCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEE
Q 020296          184 SPNMKKHIGMIAGGTGITPMLQVIEAILKNP--------DDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTV  254 (328)
Q Consensus       184 ~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~--------~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~  254 (328)
                      +.+..++++|||||||||||++++++++.+.        ....+++|+|++|+.+|+++.+|+.++..+++. +.+++..
T Consensus         2 P~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~~~~~~~~~~~~~~~~   81 (162)
T d2bmwa2           2 PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAI   81 (162)
T ss_dssp             CSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred             CcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            4455689999999999999999999987421        123689999999999999999999999999887 7787877


Q ss_pred             eCCCCCCCCcccccCHHH------HhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCe
Q 020296          255 DNPTKNWKGGVGYISKDT------ALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMV  325 (328)
Q Consensus       255 ~~~~~~~~g~~g~i~~~~------l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I  325 (328)
                      +.....|.+..++.....      +.....  ..+..||+|||++|++++.             ..|++.|++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vyvCGp~~m~~~v~-------------~~L~~~g~~~~~~  143 (162)
T d2bmwa2          82 SREQKNPQGGRMYIQDRVAEHADQLWQLIK--NQKTHTYICGPPPMEEGID-------------AALSAAAAKEGVT  143 (162)
T ss_dssp             TTTCBCTTSSBCCHHHHHHHTHHHHHHHHT--STTEEEEEEECTTHHHHHH-------------HHHHHHHHTTTCC
T ss_pred             ecccccccCCcchhhhhHHHHHHHHhhhcc--cCCCEEEEECCHHHHHHHH-------------HHHHHhhcccCcc
Confidence            777777766655544221      222221  2468999999999999998             8888888877654

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.5e-20  Score=141.53  Aligned_cols=95  Identities=19%  Similarity=0.336  Sum_probs=84.1

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      .|.+++|+++++++++++.|+|+.|   .+.+.||||+.++++..      +....|+|||+|.|.+ +.++|+||++++
T Consensus         2 ~w~~a~V~~v~~~t~~v~~l~~~~p---~~~f~pGQ~v~l~~~~~------g~~~~R~YSi~s~p~~-~~~~~~vk~~~~   71 (99)
T d1fdra1           2 DWVTGKVTKVQNWTDALFSLTVHAP---VLPFTAGQFTKLGLEID------GERVQRAYSYVNSPDN-PDLEFYLVTVPD   71 (99)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEECC---CCCCCTTCEEEEEECC---------CEEEEEECCSCTTC-SSEEEEEECCTT
T ss_pred             CcEEEEEEEEEEcCCCEEEEEEcCC---CCCCCCCcEEEeccCCC------CCcEEEEEccCCCCCC-ceeEEEEEEecC
Confidence            6999999999999999999999866   36899999999999875      6678999999999875 889999999999


Q ss_pred             CccchhhhcCCCCCEEEEEceeecc
Q 020296          157 GKMSQHFASLKPGDVVEVKGPIEKL  181 (328)
Q Consensus       157 G~~S~~L~~l~~Gd~v~v~GP~G~~  181 (328)
                      |.+|+||+++++||+|.|+||.|++
T Consensus        72 G~~S~~l~~lk~GD~v~v~gP~~g~   96 (99)
T d1fdra1          72 GKLSPRLAALKPGDEVQVVSEAAGF   96 (99)
T ss_dssp             CSSHHHHHTCCTTCEEEEESSCBCC
T ss_pred             cHHHHHHhhCCCCCEEEECcCCCCE
Confidence            9999999999999999999966553

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=5.4e-20  Score=140.59  Aligned_cols=104  Identities=14%  Similarity=0.136  Sum_probs=90.6

Q ss_pred             CCCCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEE
Q 020296           74 NPDKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIK  152 (328)
Q Consensus        74 ~~~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk  152 (328)
                      .++.|++++|++++++++|++.|+|+.++ .....+.||||+.++++..    +......|+||+++.++ ++.++|.||
T Consensus         2 ~w~g~~~~~v~~~~~~t~~~~~~~l~~~d~~~~~~~~pGQ~v~l~~~~~----~~~~~~~r~~s~ss~~~-~~~~~i~vk   76 (107)
T d1gvha2           2 GWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPE----GFPHQEIRQYSLTRKPD-GKGYRIAVK   76 (107)
T ss_dssp             CCSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCT----TCSSCEEEEEECCSCCC-SSCEEEEEE
T ss_pred             CcCCCEEEEEEEEEEeCCCeEEEEEEcCCcCcccCCCCCCEEEEEeecc----ccCceEEeeccccCCCC-CCceEEEEE
Confidence            36789999999999999999999999876 4557899999999999765    12334679999988875 588999999


Q ss_pred             EeCCCccchhhh-cCCCCCEEEEEceeeccc
Q 020296          153 VYPEGKMSQHFA-SLKPGDVVEVKGPIEKLR  182 (328)
Q Consensus       153 ~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~  182 (328)
                      ++++|.+|+||+ +|++||+|.++||+|.|.
T Consensus        77 ~~~~G~~S~~l~~~l~~Gd~v~v~gP~G~Ff  107 (107)
T d1gvha2          77 REEGGQVSNWLHNHANVGDVVKLVAPAGDFF  107 (107)
T ss_dssp             CCTTCHHHHHHHHTCCTTCEEEEEEEECSCC
T ss_pred             EcCCcchhHHHHhcCCCCCEEEEeCccccCC
Confidence            999999999998 799999999999999973

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.82  E-value=1.3e-20  Score=153.25  Aligned_cols=112  Identities=21%  Similarity=0.306  Sum_probs=83.2

Q ss_pred             CceEEEEecCccHHHHHHHHHHHHhC----CCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC-eEEEEEEeCCCCCCC
Q 020296          188 KKHIGMIAGGTGITPMLQVIEAILKN----PDDNTQVSLLYGNISPDDILLKQKLDILAASHPN-LKVFYTVDNPTKNWK  262 (328)
Q Consensus       188 ~~~ivlIAgGtGItP~~~ll~~l~~~----~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~-~~v~~~~~~~~~~~~  262 (328)
                      ..++||||||||||||++|+++++.+    .....+++|+|++|+..|++|.+|+.++.+++++ +.+..+.+.+...|.
T Consensus         3 ~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (154)
T d1jb9a2           3 NATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRS   82 (154)
T ss_dssp             TCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTCC---
T ss_pred             CCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccchhHHHHHHHHHHHhCCCCEEEEEEeccCCcCcC
Confidence            47999999999999999999998842    2344689999999999999999999999999887 666667676666666


Q ss_pred             CcccccCHHHHhh---cCCCCCCCcEEEEECChhhHHhhh
Q 020296          263 GGVGYISKDTALK---GLPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       263 g~~g~i~~~~l~~---~~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      ...+++.......   .......+..||+|||++||++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~mm~~v~  122 (154)
T d1jb9a2          83 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQ  122 (154)
T ss_dssp             -CCCCHHHHHHHTHHHHHHHHHTTCEEEEEECGGGHHHHH
T ss_pred             CcccccchHHHHhHHHhhhcccCCCEEEEECCHHHHHHHH
Confidence            6556554322110   000011357999999999999987

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.82  E-value=4.1e-20  Score=142.22  Aligned_cols=103  Identities=14%  Similarity=0.216  Sum_probs=89.5

Q ss_pred             CCeEEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEe
Q 020296           76 DKWIGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY  154 (328)
Q Consensus        76 ~~~~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~  154 (328)
                      ..|++++|++++++++|+++|+|+.++ ...+.+.||||+.++++.+    +.+....|+|||+|.|.+ +.++|.||+.
T Consensus         2 ~g~r~~~V~~~~~~t~dv~~~~l~~~~~~~~~~~~~GQ~v~l~~~~~----~~~~~~~R~ySi~s~p~~-~~~~~~v~~~   76 (111)
T d1cqxa2           2 KGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVP----ALGLQQIRQYSLSDMPNG-RTYRISVKRE   76 (111)
T ss_dssp             SSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEET----TTTEEEEEEEECCSCCCS-SCEEEEEECC
T ss_pred             CCceEEEEEEEEEeCCCcEEEEEEeCCcCcccCCCCCCEEEEEeecC----CCcceeeeeccccCCccC-CCeEEEEEEe
Confidence            579999999999999999999999886 4557899999999998764    125568999999999864 7899999975


Q ss_pred             -----CCCccchhhh-cCCCCCEEEEEceeecccc
Q 020296          155 -----PEGKMSQHFA-SLKPGDVVEVKGPIEKLRY  183 (328)
Q Consensus       155 -----~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~  183 (328)
                           ++|.+|+||+ +|++||+|.++||+|+|.+
T Consensus        77 ~~~~~~~G~~S~~l~~~l~~Gd~v~v~gP~G~F~L  111 (111)
T d1cqxa2          77 GGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHI  111 (111)
T ss_dssp             CBTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCSC
T ss_pred             cCCCcccchhHHHHHhcCCCCCEEEEEccCeEeEC
Confidence                 4688999998 7999999999999999864

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.80  E-value=2.8e-19  Score=134.40  Aligned_cols=96  Identities=16%  Similarity=0.262  Sum_probs=85.9

Q ss_pred             CeEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCC
Q 020296           77 KWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE  156 (328)
Q Consensus        77 ~~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~  156 (328)
                      ++..-+|++++++++++..|+++.++  .+.|+||||+.+.++..      ++.+.|+|||+|+|.+ +.++++||++++
T Consensus         2 ~~~~~kV~~v~~~t~~~~~~~l~~~~--~~~f~aGQ~~~l~~~~~------g~~~~R~ySi~S~p~~-~~~~~~i~~~~~   72 (99)
T d1a8pa1           2 NLNVERVLSVHHWNDTLFSFKTTRNP--SLRFENGQFVMIGLEVD------GRPLMRAYSIASPNYE-EHLEFFSIKVQN   72 (99)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEECCT--TCCCCTTCEEEEEEEET------TEEEEEEEECCSCTTS-SEEEEEEECCSS
T ss_pred             CcceEEEEEEEecCCCEEEEEecCCC--CCccCCCcEEEEeccCC------CceeEeeccccCCCCC-CcEEEEEEEeCC
Confidence            45667899999999999999998775  47799999999999876      6778999999999865 789999999999


Q ss_pred             CccchhhhcCCCCCEEEEE-ceeecc
Q 020296          157 GKMSQHFASLKPGDVVEVK-GPIEKL  181 (328)
Q Consensus       157 G~~S~~L~~l~~Gd~v~v~-GP~G~~  181 (328)
                      |.+|+||++|++||+|.|. ||+|.|
T Consensus        73 G~~S~~L~~l~~Gd~v~v~~gP~G~l   98 (99)
T d1a8pa1          73 GPLTSRLQHLKEGDELMVSRKPTGTL   98 (99)
T ss_dssp             CSSHHHHTTCCTTCEEEEESCCBCSC
T ss_pred             CChhHHHHhCCCCCEEEECCCCceeE
Confidence            9999999999999999996 999986

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.1e-20  Score=151.95  Aligned_cols=125  Identities=18%  Similarity=0.175  Sum_probs=91.0

Q ss_pred             CCCCCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeC-CCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCC
Q 020296          184 SPNMKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNI-SPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWK  262 (328)
Q Consensus       184 ~~~~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r-~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~  262 (328)
                      +.+..+++|||||||||||+++||+++..+... .+++++|+++ +.+++++.+|+.++.+.+++++++.+.+++...+.
T Consensus         2 P~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~   80 (153)
T d1ddga2           2 PANPETPVIMIGPGTGIAPFRAFMQQRAADEAP-GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKV   80 (153)
T ss_dssp             CSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC-SCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSSSSCC
T ss_pred             CcCCCCCEEEEECchhHHHHHHHHHHHHHhcCC-CceEEeecccCcHHHHHhHHHHHHHHHcCCCceEEEEEEecccCcc
Confidence            445678999999999999999999998876544 5566666665 56678899999999999999999999888766554


Q ss_pred             CcccccC--HHHHhhcCCCCCCCcEEEEECChhh-HHhhhcccccCCCcchHHHHHhhcCCCCCCe
Q 020296          263 GGVGYIS--KDTALKGLPSPSDDALILVCGPPGM-MKHVSGEKAKDYSQGELSGILKDLGYTEQMV  325 (328)
Q Consensus       263 g~~g~i~--~~~l~~~~~~~~~~~~v~vCGP~~m-~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I  325 (328)
                      ...+.+.  ...+.....   .+..+|+|||+.| +++++             ..|.+.|.+..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~---~~~~~yiCG~p~~~~~~v~-------------~~L~~~~~~~~~~  130 (153)
T d1ddga2          81 YVQDKLREQGAELWRWIN---DGAHIYVCGDANRMAKDVE-------------QALLEVIAEFGGM  130 (153)
T ss_dssp             CHHHHHHHTHHHHHHHHH---TTCEEEEEECTTTHHHHHH-------------HHHHHHHHHTTTC
T ss_pred             cccchHHHHHHHHHhhhc---cCCEEEEECCCcchHHHHH-------------HHHHHHHHHhcCC
Confidence            4333322  222222222   2578999998765 58887             7777777665554

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=3.4e-20  Score=151.28  Aligned_cols=122  Identities=20%  Similarity=0.311  Sum_probs=91.4

Q ss_pred             CceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCC--------eEEEEEEeCCCC
Q 020296          188 KKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPN--------LKVFYTVDNPTK  259 (328)
Q Consensus       188 ~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~--------~~v~~~~~~~~~  259 (328)
                      .+++||||||||||||++|+++++... ...+++++|++|+.++.++.+++..+...+++        +.+....+....
T Consensus         7 ~~~lvlIagGtGIaP~~sil~~~~~~~-~~~~~~l~~g~r~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (158)
T d1a8pa2           7 GKHLYMLSTGTGLAPFMSLIQDPEVYE-RFEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTRESF   85 (158)
T ss_dssp             CSEEEEEEEGGGGHHHHHHTTCHHHHH-HCSEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHhC-CCCceeeeeccccHHHHhhHHHHHHHHhhhhhhhhccccceEEEEecccccc
Confidence            379999999999999999999987653 34799999999999999999999998877663        345555555444


Q ss_pred             CCCCcc------cccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCCCCCCe
Q 020296          260 NWKGGV------GYISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGYTEQMV  325 (328)
Q Consensus       260 ~~~g~~------g~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~~~~~I  325 (328)
                      .+.+..      +++.+. +...... .++..||+|||++|++.+.             +.|.++|++++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~yiCGp~~m~~~v~-------------~~L~~~G~~~~~~  142 (158)
T d1a8pa2          86 HNQGRLTDLMRSGKLFED-IGLPPIN-PQDDRAMICGSPSMLDESC-------------EVLDGFGLKISPR  142 (158)
T ss_dssp             SSBSCHHHHHHSSHHHHH-HTCCCCC-TTTEEEEEEECHHHHHHHH-------------HHHHHTTCCBCSS
T ss_pred             cccccccchhccchhhhh-hhccccC-cccceEEEECCHHHHHHHH-------------HHHHHcCCCccCC
Confidence            444422      233222 2111122 2468999999999999998             9999999988754

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.7e-19  Score=145.64  Aligned_cols=115  Identities=19%  Similarity=0.238  Sum_probs=85.3

Q ss_pred             cCCCCCceEEEEecCccHHHHHHHHHHHH---hCCCCCCeEEEEEeeCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeCCC
Q 020296          183 YSPNMKKHIGMIAGGTGITPMLQVIEAIL---KNPDDNTQVSLLYGNISPD-DILLKQKLDILAASHPNLKVFYTVDNPT  258 (328)
Q Consensus       183 ~~~~~~~~ivlIAgGtGItP~~~ll~~l~---~~~~~~~~i~L~~~~r~~~-d~~~~~el~~l~~~~~~~~v~~~~~~~~  258 (328)
                      ++.+...++||||+||||||+++++++..   .+.....+++|||++|+.+ |++|.+||+++.+.+++++++.+.+++.
T Consensus         2 lP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~   81 (160)
T d1ja1a3           2 LPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQ   81 (160)
T ss_dssp             CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSSEEEEEETTSS
T ss_pred             cCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCCceeEEEeeccc
Confidence            44566789999999999999999998743   3444456899999999865 7999999999999988888988888875


Q ss_pred             CCCCCcccccC--HHHHhhcCCCCCCCcEEEEECCh-hhHHhhh
Q 020296          259 KNWKGGVGYIS--KDTALKGLPSPSDDALILVCGPP-GMMKHVS  299 (328)
Q Consensus       259 ~~~~g~~g~i~--~~~l~~~~~~~~~~~~v~vCGP~-~m~~~v~  299 (328)
                      +........+.  .+.+.+.+.+  .+..||||||+ .|.++|+
T Consensus        82 ~~~~yvq~~~~~~~~~~~~~l~~--~~~~vYvCG~~~~M~~~V~  123 (160)
T d1ja1a3          82 AHKVYVQHLLKRDREHLWKLIHE--GGAHIYVAGDARNMAKDVQ  123 (160)
T ss_dssp             SSCCCHHHHHHHTHHHHHHHHHT--SCCEEEEEEETTTHHHHHH
T ss_pred             cCccccchHHHHHHHHHHHHHhc--CCcEEEEeCCCccchHHHH
Confidence            54322222222  2333343333  35899999975 6888886

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2e-19  Score=134.81  Aligned_cols=95  Identities=13%  Similarity=0.155  Sum_probs=79.7

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      ...++|.+++.+++++..|+|+.+.  .+.|.||||+.|.++..         ..|+||++|.|++++.++|.||..++|
T Consensus         2 tl~~~V~~i~~lt~~v~~~~l~~~~--~~~f~~GQ~v~l~~~~~---------~~r~ySias~p~~~~~l~l~ir~~~~g   70 (97)
T d1qfja1           2 TLSCKVTSVEAITDTVYRVRIVPDA--AFSFRAGQYLMVVMDER---------DKRPFSMASTPDEKGFIELHIGASEIN   70 (97)
T ss_dssp             EEEEEEEEEEESSSSCEEEEEEESS--CCCCCTTCEEEEESSSS---------CEEEEECCSCTTSTTCEEEEEC-----
T ss_pred             cEEEEEEEEEEcCCCEEEEEEeCCc--cCccCCCCEEEEEEcCC---------CcEEEEEEEcCCCCcEEEEEEeEccCC
Confidence            3579999999999999999999874  47799999999987643         579999999998889999999999999


Q ss_pred             ccchhhh-cCCCCCEEEEEceeecccc
Q 020296          158 KMSQHFA-SLKPGDVVEVKGPIEKLRY  183 (328)
Q Consensus       158 ~~S~~L~-~l~~Gd~v~v~GP~G~~~~  183 (328)
                      .+|+||+ ++++||+|.|.||+|++.+
T Consensus        71 ~~s~~l~~~l~~G~~v~v~gP~G~~~l   97 (97)
T d1qfja1          71 LYAKAVMDRILKDHQIVVDIPHGEAWL   97 (97)
T ss_dssp             -CCHHHHHHHHHHSEEEEEEEECSCCC
T ss_pred             chhHhHhhcCCCCCEEEEeccCCceEC
Confidence            9999997 6999999999999998753

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.77  E-value=9.7e-19  Score=131.83  Aligned_cols=95  Identities=19%  Similarity=0.293  Sum_probs=84.7

Q ss_pred             EEEEEEEEEEecCCeeEEEEEcCC-CCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           79 IGFKLQDTARVSHNSHLFRFSFDP-SAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        79 ~~~~v~~~~~~s~~~~~~~~~~p~-~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      .+++|+++++++++++.|+|+.++ .....|+||||+.++++..        ...|+||+++.+.+ +.+++.||++++|
T Consensus         4 ~~~~v~~v~~lt~~v~~~~l~~~~~~~~~~f~pGQ~v~l~i~g~--------~~~r~ys~~~~~~~-~~~~~~i~~~~~G   74 (100)
T d1krha1           4 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGT--------TETRSYSFSSQPGN-RLTGFVVRNVPQG   74 (100)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTS--------SCEEEEECCSCTTC-SEEEEEEECCTTC
T ss_pred             EEEEEEEEEEcCCCeEEEEEEcCCCCcCCCCCCCEEEEEEECCc--------ceeEEeeccCCCcc-CceEEEEEEeeCC
Confidence            368999999999999999999997 4567899999999998643        36899999998864 8899999999999


Q ss_pred             ccchhhh-cCCCCCEEEEEceeeccc
Q 020296          158 KMSQHFA-SLKPGDVVEVKGPIEKLR  182 (328)
Q Consensus       158 ~~S~~L~-~l~~Gd~v~v~GP~G~~~  182 (328)
                      .+|+||+ ++++||+|.++||+|+|.
T Consensus        75 ~~s~~l~~~l~~Gd~v~v~gP~G~Ff  100 (100)
T d1krha1          75 KMSEYLSVQAKAGDKMSFTGPFGSFY  100 (100)
T ss_dssp             HHHHHHHTTCCTTCEEEEEEEECSCS
T ss_pred             chhhhhhccCCCCCEEEEeccccccC
Confidence            9999997 699999999999999973

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.5e-19  Score=146.55  Aligned_cols=118  Identities=14%  Similarity=0.175  Sum_probs=84.7

Q ss_pred             ccccCCCCCceEEEEecCccHHHHHHHHHHHHh----CCCCCCeEEEEEeeCC-CchhhhHHHHHHHHHhCCCeEEEEEE
Q 020296          180 KLRYSPNMKKHIGMIAGGTGITPMLQVIEAILK----NPDDNTQVSLLYGNIS-PDDILLKQKLDILAASHPNLKVFYTV  254 (328)
Q Consensus       180 ~~~~~~~~~~~ivlIAgGtGItP~~~ll~~l~~----~~~~~~~i~L~~~~r~-~~d~~~~~el~~l~~~~~~~~v~~~~  254 (328)
                      .|.++.+...++||||||||||||++||+++..    ......++.++|++++ .+++++.+|+.++...++++++++.+
T Consensus         1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~   80 (165)
T d1f20a2           1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAY   80 (165)
T ss_dssp             TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence            367777777899999999999999999987542    2223356677776665 45678999999999988889999998


Q ss_pred             eCCCCCCCC-cccccCH---HHHhhcCCCCCCCcEEEEECChhhHHhhh
Q 020296          255 DNPTKNWKG-GVGYISK---DTALKGLPSPSDDALILVCGPPGMMKHVS  299 (328)
Q Consensus       255 ~~~~~~~~g-~~g~i~~---~~l~~~~~~~~~~~~v~vCGP~~m~~~v~  299 (328)
                      +++...+.+ ..+++..   +.+...+..  +++.+|+|||++|+++++
T Consensus        81 sr~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~yiCGp~~M~~~v~  127 (165)
T d1f20a2          81 SREPDRPKKYVQDVLQEQLAESVYRALKE--QGGHIYVCGDVTMAADVL  127 (165)
T ss_dssp             SSCTTSCCCCHHHHHHHHSHHHHHHHHHT--SCCEEEEEECHHHHHHHH
T ss_pred             eccccCCCCcccchHHHHHHHHHHhhccC--CCcEEEEECCcchHHHHH
Confidence            887655432 2222221   112222222  368999999999999997

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.77  E-value=1.3e-18  Score=131.54  Aligned_cols=95  Identities=20%  Similarity=0.362  Sum_probs=85.0

Q ss_pred             CCCeEEEEEEEEEEecCCeeEEEEEcCCCCC-CCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEE
Q 020296           75 PDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV  153 (328)
Q Consensus        75 ~~~~~~~~v~~~~~~s~~~~~~~~~~p~~~~-~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~  153 (328)
                      .+.|.+++|++++.+++|++.|+|+.+++.. ..|.||||+.+.++..         ..|+||++|.|.+.+.++|+||+
T Consensus         5 ~~~~~~~~V~~~~~~t~di~~~~l~~~~g~~lp~f~pGQ~v~v~~~~~---------~~R~YSl~s~p~~~~~~~i~Vk~   75 (103)
T d2piaa1           5 EDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---------SRRTYSLCNDSQERNRYVIAVKR   75 (103)
T ss_dssp             TTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---------CEEEEECCSCTTCCSEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEcCCCeEEEEEECCCCCcCCCCCCCceEEEEEecc---------eeEEEEEecCCCCCCEEEEEEEE
Confidence            4578899999999999999999999987444 4799999999998643         56999999999888999999999


Q ss_pred             eCCCcc-chhhh-cCCCCCEEEEEcee
Q 020296          154 YPEGKM-SQHFA-SLKPGDVVEVKGPI  178 (328)
Q Consensus       154 ~~~G~~-S~~L~-~l~~Gd~v~v~GP~  178 (328)
                      +++|.+ |+||+ ++++||+|.++||.
T Consensus        76 ~~~g~~~S~~l~~~l~~Gd~v~v~~Pr  102 (103)
T d2piaa1          76 DSNGRGGSISFIDDTSEGDAVEVSLPR  102 (103)
T ss_dssp             CTTSCSHHHHHHHSCCTTCEEEECCCB
T ss_pred             ECCCccchHHHHhcCCCCCEEEEeCCc
Confidence            999985 99998 89999999999995

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.77  E-value=5.3e-19  Score=135.39  Aligned_cols=99  Identities=24%  Similarity=0.399  Sum_probs=86.9

Q ss_pred             CCCCCeEEEEEEEEEEecCCeeEEEEEcCCC----CCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEE
Q 020296           73 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPS----AKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFD  148 (328)
Q Consensus        73 l~~~~~~~~~v~~~~~~s~~~~~~~~~~p~~----~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~  148 (328)
                      +.......++|++++.+++|++.|+|+.|++    ....|.||||+.+.++..        ...|+||++|.|.+++.++
T Consensus         5 ~~~~~~~~a~V~~~~~lt~di~~l~l~~p~~~~~~~~~~f~pGQ~v~l~~~g~--------~~~R~ySias~p~~~~~~~   76 (109)
T d1tvca1           5 FGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGT--------DVSRSYSPANLPNPEGRLE   76 (109)
T ss_dssp             SCCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSC--------SSSEEECCBCCSSSSCCEE
T ss_pred             cccceeEEEEEEEEEEeCCCeEEEEEECCCcccccccccCCCCcEEEEEECCc--------cccccceeccCCcCCceeE
Confidence            3445566899999999999999999999862    346799999999987542        3789999999998889999


Q ss_pred             EEEEEeCCCccchhhh-cCCCCCEEEEEceee
Q 020296          149 LLIKVYPEGKMSQHFA-SLKPGDVVEVKGPIE  179 (328)
Q Consensus       149 l~Vk~~~~G~~S~~L~-~l~~Gd~v~v~GP~G  179 (328)
                      |+||.+++|.+|+||+ ++++||+|.+.||+|
T Consensus        77 ~~i~~~~~G~~S~~l~~~l~~Gd~v~i~gP~G  108 (109)
T d1tvca1          77 FLIRVLPEGRFSDYLRNDARVGQVLSVKGPLG  108 (109)
T ss_dssp             EEECCCTTSSSHHHHHHHSSSSSEEEEEEEEC
T ss_pred             EEEEEeCCchHHHHHHhhCCCCCEEEEeCCcc
Confidence            9999999999999997 699999999999998

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.75  E-value=2.6e-18  Score=129.67  Aligned_cols=97  Identities=15%  Similarity=0.096  Sum_probs=86.7

Q ss_pred             eEEEEEEEEEEecCCeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCCCCeEEEEEEEeCCC
Q 020296           78 WIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEG  157 (328)
Q Consensus        78 ~~~~~v~~~~~~s~~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~~~~l~l~Vk~~~~G  157 (328)
                      ...++|++++.+++|+.+++|+.+. ....++||||+.++++..      +....|+||+++.+.+++.++|.||..++|
T Consensus         4 ~~~~~V~~~~~~~~~i~~l~l~~~~-~~~~~~pGQfv~l~~~~~------~~~~~R~~Si~~~~~~~~~i~~~i~~~~~g   76 (101)
T d1ep3b1           4 QEMMTVVSQREVAYNIFEMVLKGTL-VDEMDLPGQFLHLAVPNG------AMLLRRPISISSWDKRAKTCTILYRIGDET   76 (101)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEESGG-GGGCCSTTCEEEECCSCT------TCCSCEEEECCEEETTTTEEEEEEECCCTT
T ss_pred             CeeEEEEEEEEecCCEEEEEEECCC-hhhccCCCceEEEEccCC------ccEeeccceeeeCCCCCcEEEEEEeecCcc
Confidence            4569999999999999999999875 223589999999998875      556789999999988899999999999899


Q ss_pred             ccchhhhcCCCCCEEEEEceeecc
Q 020296          158 KMSQHFASLKPGDVVEVKGPIEKL  181 (328)
Q Consensus       158 ~~S~~L~~l~~Gd~v~v~GP~G~~  181 (328)
                      .+|.+|+++++||.|.|.||+|++
T Consensus        77 ~~t~~l~~l~~Gd~v~v~GP~G~~  100 (101)
T d1ep3b1          77 TGTYKLSKLESGAKVDVMGPLGNG  100 (101)
T ss_dssp             SHHHHHHTCCTTCEEEEEEEESBC
T ss_pred             hhhHHHHhCCCCCEEEEecccCCC
Confidence            999999999999999999999974

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.70  E-value=1.9e-17  Score=135.42  Aligned_cols=107  Identities=21%  Similarity=0.337  Sum_probs=83.2

Q ss_pred             CCceEEEEecCccHHHHHHHHHHHHhCCCCCCeEEEEEeeCCCchhhhHHHHHHHHHhCCCeEEEEEEeCCCCCCCCccc
Q 020296          187 MKKHIGMIAGGTGITPMLQVIEAILKNPDDNTQVSLLYGNISPDDILLKQKLDILAASHPNLKVFYTVDNPTKNWKGGVG  266 (328)
Q Consensus       187 ~~~~ivlIAgGtGItP~~~ll~~l~~~~~~~~~i~L~~~~r~~~d~~~~~el~~l~~~~~~~~v~~~~~~~~~~~~g~~g  266 (328)
                      ..++++|||||||||||++|++++.+++   .+++++|++|+.++++|.+||+++..    ..++...++   .+.+..|
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~~---~~v~l~~g~r~~~~~~~~~el~~~~~----~~~~~~~~~---~~~~~~g   76 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKILENEFSNLKN----VTLKIATDD---GSYGTKG   76 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCCHHHHHTSTT----EEEEEEETT---CSSSEES
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhcc---CceEEEEecCCHHHHHHHHHHHHhhC----CCccccccC---ccccccc
Confidence            4578999999999999999999988653   58999999999999999999988753    344444333   3455667


Q ss_pred             ccCHHHHhhcCCCCCCCcEEEEECChhhHHhhhcccccCCCcchHHHHHhhcCC
Q 020296          267 YISKDTALKGLPSPSDDALILVCGPPGMMKHVSGEKAKDYSQGELSGILKDLGY  320 (328)
Q Consensus       267 ~i~~~~l~~~~~~~~~~~~v~vCGP~~m~~~v~g~~~~~~~qg~~~~~L~~~G~  320 (328)
                      ++. +.+....+   ....+|+|||++|++++.             +.++++|.
T Consensus        77 ~v~-~~~~~~~~---~~~~vy~CGP~~m~~~v~-------------~~~~~~g~  113 (160)
T d1ep3b2          77 HVG-MLMNEIDF---EVDALYTCGAPAMLKAVA-------------KKYDQLER  113 (160)
T ss_dssp             CHH-HHHHHCCS---CCSEEEEESCHHHHHHHH-------------HHTTTCSS
T ss_pred             cHH-HHHHhhcc---ccceeeeeccchHHHHHH-------------HHHHhcCC
Confidence            776 44444332   247899999999999997             88888873

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.65  E-value=5.8e-16  Score=122.37  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=86.4

Q ss_pred             CCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC----
Q 020296           73 LNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA----  143 (328)
Q Consensus        73 l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~----  143 (328)
                      .+++.-..++|++++.+++     ++++++|.++ +..+.|.||||+.+..+....  .......|.|||+|.+.+    
T Consensus         7 ~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~-~~~~~y~pGQ~v~v~~p~~~~--~~~~~~~R~YSias~p~~~~~~   83 (133)
T d2bmwa1           7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLT-GGNLKYIEGQSIGIIPPGVDK--NGKPEKLRLYSIASTRHGDDVD   83 (133)
T ss_dssp             BBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECT-TSCCCCCTTCEEEEECSSBCT--TSCBCCCEEEEBCSCTTTTTTS
T ss_pred             cCCCCCeEEEEEEEEEccCCCCCceEEEEEEccC-CccCCccCCCEEEEEeccccc--cccccceeeeeecCCCcCCCCC
Confidence            4455545799999999974     4888888876 445789999999999876411  123457899999998763    


Q ss_pred             CCeEEEEEEEe----------CCCccchhhhcCCCCCEEEEEceeecccc
Q 020296          144 KGHFDLLIKVY----------PEGKMSQHFASLKPGDVVEVKGPIEKLRY  183 (328)
Q Consensus       144 ~~~l~l~Vk~~----------~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~  183 (328)
                      ...++++||+.          ++|.+|+||++|++||+|.+.||+|+|.+
T Consensus        84 ~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD~v~v~GP~G~~fL  133 (133)
T d2bmwa1          84 DKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEML  133 (133)
T ss_dssp             SSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSC
T ss_pred             ccEEEEEEEeccccccccCCCCCcEehhhHhhCCCCCEEEEeCCccceeC
Confidence            35799999975          46999999999999999999999999754

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.59  E-value=4.6e-15  Score=117.22  Aligned_cols=105  Identities=17%  Similarity=0.222  Sum_probs=83.4

Q ss_pred             cCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCCcCCCC---
Q 020296           72 ALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEA---  143 (328)
Q Consensus        72 ~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~s~~~~---  143 (328)
                      ..++..-..++|++++.++.     +++.|.|..+.  .+.|.||||+.|..+...  ........|.|||+|+|.+   
T Consensus        13 ~y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~--~~~y~pGQ~v~v~~p~~~--~~~~~~~~R~YSIaSsP~~~~~   88 (136)
T d1fnda1          13 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG--EIPYREGQSVGVIPDGED--KNGKPHKLRLYSIASSALGDFG   88 (136)
T ss_dssp             SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT--CCCCCTTCEEEEECSSBC--TTSSBCCCEEEECCSCTTCTTS
T ss_pred             eecCCCCeEEEEEeEEEccCCCCCceEEEEecccCC--CCcccCCCEEEEECCCcc--cccccceeEEeecccCCcCCCC
Confidence            34455545799999999974     57777777653  588999999999986531  1123457899999999863   


Q ss_pred             -CCeEEEEEEEe---------CCCccchhhhcCCCCCEEEEEceeec
Q 020296          144 -KGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEK  180 (328)
Q Consensus       144 -~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~GP~G~  180 (328)
                       .+.++|+||++         ++|.+|+||++|++||+|.|+||+|+
T Consensus        89 ~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD~V~v~GP~Gk  135 (136)
T d1fnda1          89 DAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK  135 (136)
T ss_dssp             SSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECS
T ss_pred             CCcEEEEEEEEeecccCCCcCCCceEehhhccCCCcCEEEEeCCCCC
Confidence             46899999976         37999999999999999999999996

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.43  E-value=1.4e-12  Score=104.97  Aligned_cols=119  Identities=14%  Similarity=0.147  Sum_probs=90.9

Q ss_pred             cccCCCCccCCCCCeEEEEEEEEEEecC-----CeeEEEEEcCCCCCCCcccceEEEEEecCCCCCCCCCccccccccCC
Q 020296           64 NEETDPKIALNPDKWIGFKLQDTARVSH-----NSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPI  138 (328)
Q Consensus        64 ~~~~~~~~~l~~~~~~~~~v~~~~~~s~-----~~~~~~~~~p~~~~~~~~~Gq~v~l~~~~~~~~~~~~~~~~RpYTi~  138 (328)
                      .+.+.+....++..-..++|++++.++.     +++++.|.++.  .+.|.+||++.+..+.........+...|.|||+
T Consensus        14 ~~~e~p~~~y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~--~~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIa   91 (157)
T d1jb9a1          14 SAKEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIA   91 (157)
T ss_dssp             CCSSCCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT--SSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBC
T ss_pred             cccCCCcccCCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCC--CccEecCceEEEEcCCccccccCccCCcCEEEec
Confidence            3444455556666544689999999985     68888888864  5889999999999875422222355688999999


Q ss_pred             cCCCC----CCeEEEEEEEe-------------CCCccchhhhcCCCCCEEEEEceeec-cccC
Q 020296          139 SDTEA----KGHFDLLIKVY-------------PEGKMSQHFASLKPGDVVEVKGPIEK-LRYS  184 (328)
Q Consensus       139 s~~~~----~~~l~l~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~  184 (328)
                      |++..    ...+.++||..             ..|.+|.||+++++||+|.|.||+|+ |.++
T Consensus        92 SSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd~V~i~gp~g~~F~lP  155 (157)
T d1jb9a1          92 STRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLP  155 (157)
T ss_dssp             SCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTCEEEEEEEECSTTCCC
T ss_pred             CCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCCcCEEEEEecCCCcccCC
Confidence            99853    34688999863             36899999999999999999999998 4444

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.12  E-value=0.0016  Score=55.68  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             ccccccccCCcCCC-CCCeEEEEEEEeC-----------CCccchhhhcCCCCCEEEEE
Q 020296          129 KYVVRPYTPISDTE-AKGHFDLLIKVYP-----------EGKMSQHFASLKPGDVVEVK  175 (328)
Q Consensus       129 ~~~~RpYTi~s~~~-~~~~l~l~Vk~~~-----------~G~~S~~L~~l~~Gd~v~v~  175 (328)
                      ....|.|||+|+|. ..+.++|+|..+.           .|-.|.||.+|++||+|.+.
T Consensus       207 ~L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd~v~v~  265 (270)
T d1f20a1         207 LLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCF  265 (270)
T ss_dssp             BCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEE
T ss_pred             ccccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCCEEEEE
Confidence            35789999999985 4688999886431           38899999999999998764

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0048  Score=50.91  Aligned_cols=47  Identities=19%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             ccccccccCCcCCC-CCCeEEEEEEEeC--------CCccchhhh-cCCCCCEEEEE
Q 020296          129 KYVVRPYTPISDTE-AKGHFDLLIKVYP--------EGKMSQHFA-SLKPGDVVEVK  175 (328)
Q Consensus       129 ~~~~RpYTi~s~~~-~~~~l~l~Vk~~~--------~G~~S~~L~-~l~~Gd~v~v~  175 (328)
                      ....|.|||+|+|. ..+.++|+|..+.        .|-.|+||. .+++|++|.+.
T Consensus       157 ~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~r~GvcS~~L~~~l~~g~~V~v~  213 (221)
T d1ddga1         157 PLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVF  213 (221)
T ss_dssp             BCCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEE
T ss_pred             ccCceeeeeccccccCCCeeeEEEEEEEeeCCCCccceecHHHHHhhCCCCCEEEEE
Confidence            34679999999985 4678999886532        489999998 59999998775

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.31  E-value=0.092  Score=44.43  Aligned_cols=47  Identities=4%  Similarity=0.087  Sum_probs=34.2

Q ss_pred             CccCCCCCeEEEEEEEEEEecCC----eeEEEEEcCCCCCCCcccceEEEEE
Q 020296           70 KIALNPDKWIGFKLQDTARVSHN----SHLFRFSFDPSAKLGLDVASCILTR  117 (328)
Q Consensus        70 ~~~l~~~~~~~~~v~~~~~~s~~----~~~~~~~~p~~~~~~~~~Gq~v~l~  117 (328)
                      +...+.+.-..++|++.+.++++    +..+.|.+++ ....|.||.++.+.
T Consensus        34 ~~~y~~~nP~~A~v~~n~~L~~~s~k~~~Hie~dl~~-s~l~Y~~GD~l~V~   84 (279)
T d1ja1a1          34 KPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISD-SKIRYESGDHVAVY   84 (279)
T ss_dssp             CSSCBTTBCEEEEEEEEEECCSSSSSCEEEEEEECTT-SCCCCCTTCEEEEC
T ss_pred             CCCCCCCCCEEeEEEEEEEeCCCCCccEEEEEEEcCC-CCceecCCCEEEEE
Confidence            34455555456899999998654    7788888874 45789999988764