Citrus Sinensis ID: 020298

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MERGGGGWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFRRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSGNDLSSDQLSRHSNIPLEELRHRRIERFG
cccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccEEEcEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHcc
cccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHccccccHHHHcccHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEHcHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccEEccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHcc
merggggwrvsrgmlPLLALHAfneyhrlpwkppvTAALLATNTLIYLrpafldslvpsihevwfnphlilkykdlkrfflspfyhasesHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNsrsedytnvhGLLVPARYAAWAELIIIQMFvpgvsflghLGGILAGILYLKlkggysgsdplttIIRGATGVLSWPLRFARYlfrrpriygrgtvggsdtrrtapiiwrcpactfdnsgwLSICEmcgtsrsgndlssdqlsrhsnipleeLRHRRIERFG
merggggwrvsrGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGatgvlswpLRFARylfrrpriygrgtvggsdtrrtapiiwrcpactfDNSGWLSICEMCGTSRsgndlssdqlsrhsnipleelrhrrierfg
MERGGGGWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFlghlggilagilylklkggysgsDPLTTIIRGATGVLSWPLRFARYLFRRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSGNDLSSDQLSRHSNIPLEELRHRRIERFG
******GWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFRRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCG*********************************
***************PLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFR*********************************************************************RRI*R**
********RVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFRRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSGNDLSSDQLSRHSNIPLEELRHRRIERFG
***********RGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFRRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGT********************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MERGGGGWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFRRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSRSGNDLSSDQLSRHSNIPLEELRHRRIERFG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
Q8RXW0334 Uncharacterized protein A yes no 0.996 0.979 0.687 1e-120
Q8TEB9315 Rhomboid-related protein yes no 0.588 0.612 0.402 4e-32
Q8BHC7315 Rhomboid-related protein yes no 0.588 0.612 0.382 3e-30
Q5RBS4318 Rhomboid-related protein yes no 0.582 0.600 0.382 7e-30
Q4V8F3316 Rhomboid-related protein yes no 0.588 0.610 0.368 9e-29
Q8LB17403 Uncharacterized protein A no no 0.548 0.446 0.359 2e-17
Q5UQ86171 Putative rhomboid protein N/A no 0.387 0.742 0.335 2e-05
Q6CR06271 Rhomboid protein 2 OS=Klu yes no 0.509 0.616 0.316 0.0001
>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1 Back     alignment and function desciption
 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/333 (68%), Positives = 272/333 (81%), Gaps = 6/333 (1%)

Query: 1   MERGGGGWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSI 60
           ME  G G R   GMLPLLAL A  EY+RLPWKPPVTA+LLA NTL+YLRPAF+D ++P I
Sbjct: 1   MENFGEGRRSGGGMLPLLALSAVAEYYRLPWKPPVTASLLAANTLVYLRPAFIDPVIPHI 60

Query: 61  HEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVV 120
            EVWFNPHLI K+KDLKR FLS FYH +E HL YNMMSLLWKGI+LETSMGS+EFA+MV 
Sbjct: 61  SEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVF 120

Query: 121 ALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLL 180
            L+GMSQG+TLLLAKSL+L FDY+RAYY+EYAVGFSGVLFAMKVVLNS++EDY++V+G+L
Sbjct: 121 TLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYSSVYGIL 180

Query: 181 VPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVL 240
           VP +YAAWAELI++QMFVP  SFLGHLGGILAGI+YLKLKG YSGSDP+T  +RG + ++
Sbjct: 181 VPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIYLKLKGSYSGSDPVTMAVRGVSRLV 240

Query: 241 SWPLRFARYLF--RRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSR 298
           +WPLRF   +   RR RI GRG VG   T    P IWRC +CT+DNSGWLS CEMCG+ R
Sbjct: 241 TWPLRFLNGMVRSRRRRITGRGRVGRGQTGIAGPGIWRCQSCTYDNSGWLSACEMCGSGR 300

Query: 299 S-GNDLSSDQ---LSRHSNIPLEELRHRRIERF 327
           + GN  S +Q   LS  +++PL+ELR RR+ERF
Sbjct: 301 ARGNGWSLNQGPALSSSNDLPLDELRRRRVERF 333

Arabidopsis thaliana (taxid: 3702)
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1 Back     alignment and function description
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2 Back     alignment and function description
>sp|Q5UQ86|RHBDL_MIMIV Putative rhomboid protein L523 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L523 PE=3 SV=1 Back     alignment and function description
>sp|Q6CR06|RBD2_KLULA Rhomboid protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RBD2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
224107010328 predicted protein [Populus trichocarpa] 0.990 0.990 0.725 1e-130
225432236328 PREDICTED: uncharacterized protein At3g1 0.972 0.972 0.770 1e-129
255556632325 conserved hypothetical protein [Ricinus 0.920 0.929 0.741 1e-121
356565565332 PREDICTED: uncharacterized protein At3g1 0.951 0.939 0.666 1e-121
9294149 506 unnamed protein product [Arabidopsis tha 0.996 0.646 0.687 1e-120
30684602334 rhomboid-like protein 14 [Arabidopsis th 0.996 0.979 0.687 1e-118
297830378335 hypothetical protein ARALYDRAFT_898103 [ 0.957 0.937 0.687 1e-115
358248954322 uncharacterized protein LOC100816495 [Gl 0.954 0.972 0.648 1e-114
388508086335 unknown [Medicago truncatula] 0.923 0.904 0.649 1e-111
449457305314 PREDICTED: uncharacterized protein At3g1 0.908 0.949 0.640 6e-99
>gi|224107010|ref|XP_002314342.1| predicted protein [Populus trichocarpa] gi|222863382|gb|EEF00513.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/331 (72%), Positives = 277/331 (83%), Gaps = 6/331 (1%)

Query: 1   MERGGGGWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSI 60
           M+R G    +++GMLPLLA+HA +EY+RLPWKPPVTAALL  NTLIYLRPAFL  ++PSI
Sbjct: 1   MDRRGS---LTKGMLPLLAIHAVSEYYRLPWKPPVTAALLGANTLIYLRPAFLRHILPSI 57

Query: 61  HEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVV 120
            +VWFNPHLILKY+DLKRF LSPFYH S+SHL YNMMSLLWKGIQLETS+GS EFA+M+ 
Sbjct: 58  DQVWFNPHLILKYRDLKRFLLSPFYHVSDSHLVYNMMSLLWKGIQLETSVGSVEFASMLA 117

Query: 121 ALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLL 180
           ALL MSQGITLLLA+SL+LFFDY++ +YSEY+ GFSGVLFAMKVVLNS+SE  TNV+GL+
Sbjct: 118 ALLAMSQGITLLLARSLLLFFDYDKPFYSEYSAGFSGVLFAMKVVLNSQSESLTNVYGLV 177

Query: 181 VPARYAAWAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVL 240
           +PAR+AAWAELI+IQMFVPGVSFLGHLGGILAGILY+KLK  YSG DPLT  IR  T V+
Sbjct: 178 IPARHAAWAELILIQMFVPGVSFLGHLGGILAGILYVKLKRAYSGPDPLTLTIRTLTNVI 237

Query: 241 SWPLRFARYL--FRRPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSR 298
           SWPLRF R L  FRR RI GRG+VGG  T R    +WRC ACT+DNS  LS+CEMCGTSR
Sbjct: 238 SWPLRFVRNLFQFRRGRISGRGSVGGRQTGRAMSGLWRCQACTYDNSSLLSVCEMCGTSR 297

Query: 299 SGNDLSSDQLSRHS-NIPLEELRHRRIERFG 328
               LSS + SRHS ++ LEE+R RRIERFG
Sbjct: 298 GARGLSSREFSRHSDDLTLEEIRLRRIERFG 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432236|ref|XP_002270713.1| PREDICTED: uncharacterized protein At3g17611 [Vitis vinifera] gi|147864086|emb|CAN81122.1| hypothetical protein VITISV_038478 [Vitis vinifera] gi|297736839|emb|CBI26040.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556632|ref|XP_002519350.1| conserved hypothetical protein [Ricinus communis] gi|223541665|gb|EEF43214.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356565565|ref|XP_003551010.1| PREDICTED: uncharacterized protein At3g17611-like [Glycine max] Back     alignment and taxonomy information
>gi|9294149|dbj|BAB02051.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30684602|ref|NP_850606.1| rhomboid-like protein 14 [Arabidopsis thaliana] gi|75247670|sp|Q8RXW0.1|Y3761_ARATH RecName: Full=Uncharacterized protein At3g17611 gi|19310562|gb|AAL85014.1| unknown protein [Arabidopsis thaliana] gi|21436261|gb|AAM51269.1| unknown protein [Arabidopsis thaliana] gi|332642458|gb|AEE75979.1| rhomboid-like protein 14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830378|ref|XP_002883071.1| hypothetical protein ARALYDRAFT_898103 [Arabidopsis lyrata subsp. lyrata] gi|297328911|gb|EFH59330.1| hypothetical protein ARALYDRAFT_898103 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|358248954|ref|NP_001240224.1| uncharacterized protein LOC100816495 [Glycine max] gi|255640981|gb|ACU20770.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388508086|gb|AFK42109.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449457305|ref|XP_004146389.1| PREDICTED: uncharacterized protein At3g17611-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
TAIR|locus:1005716534334 RBL14 "RHOMBOID-like protein 1 0.996 0.979 0.624 3.4e-109
UNIPROTKB|E2R6X6316 RHBDD1 "Uncharacterized protei 0.573 0.594 0.401 5.3e-30
UNIPROTKB|E2RD89316 RHBDD1 "Uncharacterized protei 0.573 0.594 0.401 5.3e-30
ZFIN|ZDB-GENE-050417-85335 rhbdd1 "rhomboid domain contai 0.493 0.483 0.385 4.7e-29
MGI|MGI:1924117315 Rhbdd1 "rhomboid domain contai 0.5 0.520 0.395 9.6e-29
UNIPROTKB|Q5RBS4318 RHBDD1 "Rhomboid-related prote 0.570 0.588 0.388 4.1e-28
UNIPROTKB|Q8TEB9315 RHBDD1 "Rhomboid-related prote 0.570 0.593 0.398 7.3e-27
RGD|1306477316 Rhbdd1 "rhomboid domain contai 0.5 0.518 0.377 7.4e-27
UNIPROTKB|Q4V8F3316 Rhbdd1 "Rhomboid-related prote 0.5 0.518 0.377 7.4e-27
UNIPROTKB|F1SNP2189 RHBDD1 "Uncharacterized protei 0.560 0.973 0.405 3.6e-25
TAIR|locus:1005716534 RBL14 "RHOMBOID-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
 Identities = 208/333 (62%), Positives = 250/333 (75%)

Query:     1 MERGGGGWRVSRGMLPLLALHAFNEYHRLPWKPPVTAALLATNTLIYLRPAFLDSLVPSI 60
             ME  G G R   GMLPLLAL A  EY+RLPWKPPVTA+LLA NTL+YLRPAF+D ++P I
Sbjct:     1 MENFGEGRRSGGGMLPLLALSAVAEYYRLPWKPPVTASLLAANTLVYLRPAFIDPVIPHI 60

Query:    61 HEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVV 120
              EVWFNPHLI K+KDLKR FLS FYH +E HL YNMMSLLWKGI+LETSMGS+EFA+MV 
Sbjct:    61 SEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVF 120

Query:   121 ALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYTNVHGLL 180
              L+GMSQG+TLLLAKSL+L FDY+RAYY+EYAVGFSGVLFAMKVVLNS++EDY++V+G+L
Sbjct:   121 TLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYSSVYGIL 180

Query:   181 VPARYAAWAELIIIQMFVPGVSFXXXXXXXXXXXXXXXXXXXXXXXDPLTTIIRGATGVL 240
             VP +YAAWAELI++QMFVP  SF                       DP+T  +RG + ++
Sbjct:   181 VPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIYLKLKGSYSGSDPVTMAVRGVSRLV 240

Query:   241 SWPLRFARYLFR--RPRIYGRGTVGGSDTRRTAPIIWRCPACTFDNSGWLSICEMCGTSR 298
             +WPLRF   + R  R RI GRG VG   T    P IWRC +CT+DNSGWLS CEMCG+ R
Sbjct:   241 TWPLRFLNGMVRSRRRRITGRGRVGRGQTGIAGPGIWRCQSCTYDNSGWLSACEMCGSGR 300

Query:   299 S-GNDLSSDQ---LSRHSNIPLEELRHRRIERF 327
             + GN  S +Q   LS  +++PL+ELR RR+ERF
Sbjct:   301 ARGNGWSLNQGPALSSSNDLPLDELRRRRVERF 333
GO:0004252 "serine-type endopeptidase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|E2R6X6 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RD89 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-85 rhbdd1 "rhomboid domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1924117 Rhbdd1 "rhomboid domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBS4 RHBDD1 "Rhomboid-related protein 4" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TEB9 RHBDD1 "Rhomboid-related protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306477 Rhbdd1 "rhomboid domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4V8F3 Rhbdd1 "Rhomboid-related protein 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNP2 RHBDD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXW0Y3761_ARATHNo assigned EC number0.68760.99690.9790yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.210.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0102004101
hypothetical protein (328 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
pfam01694146 pfam01694, Rhomboid, Rhomboid family 1e-16
COG0705228 COG0705, COG0705, Membrane associated serine prote 4e-10
smart0054725 smart00547, ZnF_RBZ, Zinc finger domain 3e-07
pfam0064129 pfam00641, zf-RanBP, Zn-finger in Ran binding prot 3e-06
>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family Back     alignment and domain information 
 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 70  ILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGI 129
           +L+   L R   S F HA   HL +NM++LL+ GI LE  +GS  F  + +        +
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 130 TLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAM-----KVVLNSRSEDYTNVHGLLVPAR 184
           + L +              S  +VG SG +F +      ++  +R   +     LL+   
Sbjct: 61  SYLFSP------------ASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLG 108

Query: 185 YAAWAELIIIQMFVPGVSFLGHLGGILAGILY 216
                 L+    F+PG+S   HLGG++AG+L 
Sbjct: 109 IILLNLLL---GFLPGISNFAHLGGLIAGLLL 137

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146
>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|197784 smart00547, ZnF_RBZ, Zinc finger domain Back     alignment and domain information
>gnl|CDD|201366 pfam00641, zf-RanBP, Zn-finger in Ran binding protein and others Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
KOG2632258 consensus Rhomboid family proteins [Function unkno 99.97
PTZ00101278 rhomboid-1 protease; Provisional 99.93
PRK10907276 intramembrane serine protease GlpG; Provisional 99.91
COG0705228 Membrane associated serine protease [Amino acid tr 99.84
PF01694145 Rhomboid: Rhomboid family; InterPro: IPR022764 In 99.75
KOG2289316 consensus Rhomboid family proteins [Signal transdu 99.73
KOG0858239 consensus Predicted membrane protein [Function unk 99.69
PF04511197 DER1: Der1-like family; InterPro: IPR007599 The en 99.62
KOG2290652 consensus Rhomboid family proteins [Signal transdu 99.4
COG5291313 Predicted membrane protein [Function unknown] 98.93
PF0855199 DUF1751: Eukaryotic integral membrane protein (DUF 98.83
KOG2890326 consensus Predicted membrane protein [Function unk 98.8
KOG2980310 consensus Integral membrane protease of the rhombo 98.39
PF0064130 zf-RanBP: Zn-finger in Ran binding protein and oth 98.13
smart0054726 ZnF_RBZ Zinc finger domain. Zinc finger domain in 97.81
KOG4463323 consensus Uncharacterized conserved protein [Funct 97.71
KOG4477 228 consensus RING1 interactor RYBP and related Zn-fin 93.95
KOG4198280 consensus RNA-binding Ran Zn-finger protein and re 92.22
cd0072934 rubredoxin_SM Rubredoxin, Small Modular nonheme ir 90.09
cd0035033 rubredoxin_like Rubredoxin_like; nonheme iron bind 89.3
COG1592166 Rubrerythrin [Energy production and conversion] 85.47
PF1324023 zinc_ribbon_2: zinc-ribbon domain 84.64
COG5100571 NPL4 Nuclear pore protein [Nuclear structure] 84.54
PF1324826 zf-ribbon_3: zinc-ribbon domain 82.69
COG209364 DNA-directed RNA polymerase, subunit E'' [Transcri 82.25
>KOG2632 consensus Rhomboid family proteins [Function unknown] Back     alignment and domain information 
Probab=99.97  E-value=5.3e-31  Score=233.75  Aligned_cols=243  Identities=36%  Similarity=0.463  Sum_probs=198.6

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhcCchhhhcccccchhhhcccCCcchhccccccCCChhHHHHHHHHHHHHHHHHHhhh
Q 020298           31 WKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSM  110 (328)
Q Consensus        31 ~~P~vt~~li~i~v~v~ll~~~~~~~~~~~~~~~l~p~~i~~~~q~wRL~T~~f~H~~~~Hll~Nm~~L~~~G~~lE~~~  110 (328)
                      +.|.+|..++.++.++|+...+.     ......+.|..++++.|+||++||+++|.+..|+++||++++..|.++|+.+
T Consensus        13 ~~p~~ts~~~~~~~~i~lv~~~~-----~i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~   87 (258)
T KOG2632|consen   13 KIPLLTSIVVVLAILIYLVSFFP-----GIVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTH   87 (258)
T ss_pred             cchHHHHHHHHHHHHHHHHhccc-----hhhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhc
Confidence            77889999999999999975432     2346677788888899999999999999999999999999999999999999


Q ss_pred             C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHhcCCCcc-eeeccc-hhhHHHH
Q 020298          111 G-SNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDYT-NVHGLL-VPARYAA  187 (328)
Q Consensus       111 G-~~~f~~~yl~~~~~~~~l~~ll~~~l~~~~~~~~~~~~~~~~GaSg~ifgl~~~~~~~~~~~~-~~~~i~-i~~~~~~  187 (328)
                      | +.+++.++ .+.++.+++.+++....   +......++..++|.||+.||+++....+.+.+. .+++.. ||+++.|
T Consensus        88 G~t~~~l~~~-~llalf~gIl~ll~~~~---~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~P  163 (258)
T KOG2632|consen   88 GTTVRILMFT-VLLALFSGILYLLAYHV---FLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAP  163 (258)
T ss_pred             cceehHHHHH-HHHHHHHHHHHHHHHHH---HhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHH
Confidence            9 66665554 56666666666665542   2233344567899999999999999888887665 567765 9999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHhhhhHhhhhhhhccccccCccccccCCC
Q 020298          188 WAELIIIQMFVPGVSFLGHLGGILAGILYLKLKGGYSGSDPLTTIIRGATGVLSWPLRFARYLFRRPRIYGRGTVGGSDT  267 (328)
Q Consensus       188 ~~~l~~~~~~~~~vs~~aHl~G~l~G~ly~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~g~v~~~~~  267 (328)
                      |+.++.+.++.|+.|+++|+||+++|++|.+.  .+ +..|..+....++......+++.....+..+..+++.+..+..
T Consensus       164 w~lLi~~~~lvp~aSFlghl~GllvG~ay~~~--~f-~lip~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  240 (258)
T KOG2632|consen  164 WALLIATQILVPQASFLGHLCGLLVGYAYAFS--SF-GLIPGIRNYRAVTEAAWSLLRLAPWIQDLGSNSGRGIVFPGLT  240 (258)
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHHHHHHH--hh-ccCCcchhHHHhhhhhhhhhhcCCcHHHhccccCCceeccCcC
Confidence            99999999999999999999999999999997  44 7888888888888887877777776665555556676666677


Q ss_pred             CCCCCCcccCCCCccCCC
Q 020298          268 RRTAPIIWRCPACTFDNS  285 (328)
Q Consensus       268 ~~~~~g~W~c~~C~~~n~  285 (328)
                      ..+.++.|.|++||++|+
T Consensus       241 ~~~~P~~~~~~~~t~~~~  258 (258)
T KOG2632|consen  241 GSPFPGPLHCQSGTLDNS  258 (258)
T ss_pred             CCCCCCccccCCcccCCC
Confidence            777889999999988874

>PTZ00101 rhomboid-1 protease; Provisional Back     alignment and domain information
>PRK10907 intramembrane serine protease GlpG; Provisional Back     alignment and domain information
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0858 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins Back     alignment and domain information
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5291 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins Back     alignment and domain information
>KOG2890 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms] Back     alignment and domain information
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00547 ZnF_RBZ Zinc finger domain Back     alignment and domain information
>KOG4463 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription] Back     alignment and domain information
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only] Back     alignment and domain information
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase Back     alignment and domain information
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center Back     alignment and domain information
>COG1592 Rubrerythrin [Energy production and conversion] Back     alignment and domain information
>PF13240 zinc_ribbon_2: zinc-ribbon domain Back     alignment and domain information
>COG5100 NPL4 Nuclear pore protein [Nuclear structure] Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 1e-12
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 2e-12
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 2e-08
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 2e-05
3b08_B64 Ranbp-type and C3HC4-type zinc finger-containing; 5e-08
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 6e-08
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 2e-06
2crc_A52 Ubiquitin conjugating enzyme 7 interacting protein 8e-07
1nj3_A31 NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, 2e-05
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 3e-05
3a9j_C34 Mitogen-activated protein kinase kinase kinase 7- 3e-04
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181 Back     alignment and structure
 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 23/188 (12%)

Query: 33  PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHL 92
            PVT  ++    ++++    L      +      P       +  R+F     H S  H+
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGD--QEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHI 61

Query: 93  FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
            +N++   + G  +E  +GS +   + +        I+ LL+  +   F         + 
Sbjct: 62  LFNLLWWWYLGGAVEKRLGSGKLIVITL--------ISALLSGYVQQKFS------GPWF 107

Query: 153 VGFSGVLFA-----MKVVLNSRSEDYTNVHGLLVPARYAAWAELIIIQMFVPGVSFLGHL 207
            G SGV++A                     GL++ A    W       +F   ++   H+
Sbjct: 108 GGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFA--LIWIVAGWFDLFGMSMANGAHI 165

Query: 208 GGILAGIL 215
            G+  G+ 
Sbjct: 166 AGLAVGLA 173
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196 Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92 Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92 Back     alignment and structure
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Length = 64 Back     alignment and structure
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98 Back     alignment and structure
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98 Back     alignment and structure
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Length = 52 Back     alignment and structure
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A Length = 31 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Length = 34 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 99.94
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 99.93
2d9g_A53 YY1-associated factor 2; ZF-ranbp domain, structur 98.79
1nj3_A31 NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, 98.62
3a9j_C34 Mitogen-activated protein kinase kinase kinase 7- 98.54
3b08_B64 Ranbp-type and C3HC4-type zinc finger-containing; 98.53
2crc_A52 Ubiquitin conjugating enzyme 7 interacting protein 98.46
3gj3_B33 Nuclear pore complex protein NUP153; G protein, GD 97.99
2ebr_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.89
2ebq_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.75
2ebv_A57 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.43
3gj5_B34 Nuclear pore complex protein NUP153; G protein, GD 97.35
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 97.1
2lk0_A32 RNA-binding protein 5; zinc finger; NMR {Homo sapi 96.75
2k1p_A33 Zinc finger RAN-binding domain-containing protein 96.69
1n0z_A45 ZNF265; zinc finger, RNA splicing, transcription; 96.09
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 96.05
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 96.02
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 95.77
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 94.98
2cr8_A53 MDM4 protein; ZF-ranbp domain, P53-binding protein 93.56
2c6a_A46 Ubiquitin-protein ligase E3 MDM2; zinc finger, hum 89.87
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 86.49
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Back     alignment and structure
Probab=99.94  E-value=1.5e-26  Score=199.98  Aligned_cols=171  Identities=17%  Similarity=0.218  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhcCchhhhcccccchhhhcccCCcchhccccccCCChhHHHHHHHHHHHHHHHHHhhh
Q 020298           31 WKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSM  110 (328)
Q Consensus        31 ~~P~vt~~li~i~v~v~ll~~~~~~~~~~~~~~~l~p~~i~~~~q~wRL~T~~f~H~~~~Hll~Nm~~L~~~G~~lE~~~  110 (328)
                      |.||+|+.++++|+++|+++...+. .+..+++.++|..+ +++|+||++|++|+|.|+.|+++||+.++.+|+.+|+.+
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~-~~~~~~~~~~p~~~-~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~   79 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGD-QEVMLWLAWPFDPT-LKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL   79 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHSSCCSGG-GTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCc-HHHHHhhcCChhhc-cCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999998765432 12245667888754 579999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHh---cCCCcceeeccchhhHHHH
Q 020298          111 GSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNS---RSEDYTNVHGLLVPARYAA  187 (328)
Q Consensus       111 G~~~f~~~yl~~~~~~~~l~~ll~~~l~~~~~~~~~~~~~~~~GaSg~ifgl~~~~~~---~~~~~~~~~~i~i~~~~~~  187 (328)
                      |+.||+.+|+ .+++.+++...       .+.+      ...+|+||++||++++...   ..|+..  ..++.+.....
T Consensus        80 G~~~fl~~yl-~~~i~~~l~~~-------~~~~------~~~vGaSGai~gl~g~~~~~~~~~p~~~--~~l~~~~~~~~  143 (181)
T 2xov_A           80 GSGKLIVITL-ISALLSGYVQQ-------KFSG------PWFGGLSGVVYALMGYVWLRGERDPQSG--IYLQRGLIIFA  143 (181)
T ss_dssp             CHHHHHHHHH-HHHHHHHHHHH-------HHHC------SCCCCSHHHHHHHHHHHHHHHHHCGGGS--CCCCHHHHHHH
T ss_pred             ChHHHHHHHH-HHHHHHHHHHH-------HhcC------CCceeHHHHHHHHHHHHHHHHhhCcCce--eeeHHHHHHHH
Confidence            9999999995 45565554321       2332      2389999999999987542   223221  11223322211


Q ss_pred             HHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHh
Q 020298          188 WAELIIIQMF---VPGVSFLGHLGGILAGILYLKLK  220 (328)
Q Consensus       188 ~~~l~~~~~~---~~~vs~~aHl~G~l~G~ly~~~~  220 (328)
                      .+. ++..+.   .+++|+.+|++|+++|+++++..
T Consensus       144 ~~~-~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  178 (181)
T 2xov_A          144 LIW-IVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (181)
T ss_dssp             HHH-HHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            111 122222   36899999999999999998763
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Back     alignment and structure
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A Back     alignment and structure
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Back     alignment and structure
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Back     alignment and structure
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Back     alignment and structure
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A Back     alignment and structure
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 Back     alignment and structure
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Back     alignment and structure
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A* Back     alignment and structure
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A Back     alignment and structure
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Back     alignment and structure
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Back     alignment and structure
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1 Back     alignment and structure
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d3b45a1180 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 1e-10
d2nr9a1189 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu 5e-09
d1q5wa_31 g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxI 0.004
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 19/187 (10%)

Query: 33  PPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHL 92
            PVT  ++    ++++    L      +      P       +  R+F     H S  H+
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGD--QEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHI 61

Query: 93  FYNMMSLLWKGIQLETSMGSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYA 152
            +N++   + G  +E  +GS +   + +    +S  +                 +   + 
Sbjct: 62  LFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQK--------------FSGPWF 107

Query: 153 VGFSGVLFAMKVVLNSRSEDYTNVHGLLVPARY---AAWAELIIIQMFVPGVSFLGHLGG 209
            G SGV++A+   +  R E        L          W       +F   ++   H+ G
Sbjct: 108 GGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAG 167

Query: 210 ILAGILY 216
           +  G+  
Sbjct: 168 LAVGLAM 174
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189 Back     information, alignment and structure
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 31 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d3b45a1180 GlpG {Escherichia coli [TaxId: 562]} 99.92
d2nr9a1189 GlpG homolog HI0618 {Haemophilus influenzae [TaxId 99.92
d1q5wa_31 Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.25
d2gqea129 Nuclear pore complex protein nup153 {Human (Homo s 96.81
d1n0za_45 Znf265, first zinc-finger domain {Human (Homo sapi 96.04
d2cr8a141 MDM4 {Human (Homo sapiens) [TaxId: 9606]} 92.54
d1yuza236 Nigerythrin, C-terminal domain {Desulfovibrio vulg 92.23
d2c6aa146 MDM2 {Human (Homo sapiens) [TaxId: 9606]} 91.37
d1nnqa237 Rubrerythrin, C-terminal domain {Archaeon Pyrococc 91.19
d1pfva335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch 86.93
d1lkoa244 Rubrerythrin, C-terminal domain {Desulfovibrio vul 86.8
d2j9ub147 Vacuolar protein-sorting-associated protein 36, VP 84.72
d1rqga335 Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro 83.19
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.7e-25  Score=187.72  Aligned_cols=173  Identities=17%  Similarity=0.229  Sum_probs=120.9

Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhcCchhhhcccccchhhhcccCCcchhccccccCCChhHHHHHHHHHHHHHHHHHhhh
Q 020298           31 WKPPVTAALLATNTLIYLRPAFLDSLVPSIHEVWFNPHLILKYKDLKRFFLSPFYHASESHLFYNMMSLLWKGIQLETSM  110 (328)
Q Consensus        31 ~~P~vt~~li~i~v~v~ll~~~~~~~~~~~~~~~l~p~~i~~~~q~wRL~T~~f~H~~~~Hll~Nm~~L~~~G~~lE~~~  110 (328)
                      |.+|+|..++++|+++|++....+. .+..+...++++.+ .++|+||++|++|+|.|+.|+++||+.++.+|+.+|+.+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~-~~~~~~~~~~~~~~-~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~   79 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGD-QEVMLWLAWPFDPT-LKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL   79 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHSSCCSGG-GTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCc-HHHHHHHcCCCccc-ccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            6789999999999999997654432 22233444444444 689999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHhcCCCc-ceeeccchhhHHH--H
Q 020298          111 GSNEFAAMVVALLGMSQGITLLLAKSLVLFFDYERAYYSEYAVGFSGVLFAMKVVLNSRSEDY-TNVHGLLVPARYA--A  187 (328)
Q Consensus       111 G~~~f~~~yl~~~~~~~~l~~ll~~~l~~~~~~~~~~~~~~~~GaSg~ifgl~~~~~~~~~~~-~~~~~i~i~~~~~--~  187 (328)
                      |++|++.+|+ .+++.+++..+       .+.+      ....|+||+++|++++.....+.. ......+......  .
T Consensus        80 G~~~~~~~~~-~~~~~g~l~~~-------~~~~------~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
T d3b45a1          80 GSGKLIVITL-ISALLSGYVQQ-------KFSG------PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALI  145 (180)
T ss_dssp             CHHHHHHHHH-HHHHHHHHHHH-------HHHC------SCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHH
T ss_pred             cchhheeeee-HHHHHHHHHHH-------HHhc------cccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHH
Confidence            9999999995 45555554321       2222      457899999999987754432111 1111211111111  1


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 020298          188 WAELIIIQMFVPGVSFLGHLGGILAGILYLKL  219 (328)
Q Consensus       188 ~~~l~~~~~~~~~vs~~aHl~G~l~G~ly~~~  219 (328)
                      ++.........+++++.||++|+++|+++++.
T Consensus       146 ~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~  177 (180)
T d3b45a1         146 WIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV  177 (180)
T ss_dssp             HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence            11112223346789999999999999999986
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure